BLASTX nr result

ID: Ephedra25_contig00014027 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00014027
         (1328 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002519964.1| photosystem I assembly protein Ycf4 (chlorop...   324   6e-86
ref|YP_001876587.1| photosystem I assembly protein ycf4 [Welwits...   265   3e-68
ref|YP_002519965.1| putative heme-binding protein (chloroplast) ...   258   5e-66
ref|YP_008082205.1| photosystem I assembly protein Ycf4 (chlorop...   249   2e-63
dbj|BAN16921.1| photosystem I assembly protein Ycf4 (chloroplast...   249   2e-63
ref|YP_002905092.1| photosystem I assembly protein ycf4 [Picea s...   221   7e-55
gb|ACP50778.1| photosystem I assembly protein ycf4 [Pinus ponder...   219   2e-54
ref|YP_004891736.1| photosystem I assembly protein Ycf4 (chlorop...   218   5e-54
ref|YP_003934196.1| photosystem I assembly protein Ycf4 [Cedrus ...   218   5e-54
ref|YP_008965225.1| photosystem I assembly protein Ycf4 (chlorop...   217   1e-53
gb|AET48471.1| photosystem I assembly protein ycf4 (chloroplast)...   216   1e-53
ref|YP_004276385.1| photosystem I assembly protein ycf4 [Pinus n...   216   1e-53
ref|YP_001806632.1| photosystem I assembly protein Ycf4 [Cryptom...   216   1e-53
ref|YP_008965041.1| photosystem I assembly protein Ycf4 (chlorop...   215   3e-53
ref|YP_008082143.1| photosystem I assembly protein ycf4 (chlorop...   215   4e-53
ref|YP_004891527.1| photosystem I assembly protein Ycf4 (chlorop...   215   4e-53
ref|YP_002905154.1| photosystem I assembly protein ycf4 [Pinus c...   215   4e-53
gb|AET46032.1| photosystem I assembly protein ycf4 (chloroplast)...   214   5e-53
ref|YP_004276315.1| photosystem I assembly protein ycf4 [Pinus m...   214   7e-53
ref|NP_042405.1| photosystem I assembly protein Ycf4 [Pinus thun...   214   8e-53

>ref|YP_002519964.1| photosystem I assembly protein Ycf4 (chloroplast) [Ephedra
            equisetina] gi|220983565|dbj|BAH11332.1| photosystem I
            assembly protein Ycf4 (chloroplast) [Ephedra equisetina]
          Length = 185

 Score =  324 bits (830), Expect = 6e-86
 Identities = 165/187 (88%), Positives = 165/187 (88%)
 Frame = -2

Query: 1075 MNHQSKRLWIESIQGSRRKSNXXXXXXXXXXXXXXXXXXXXSYLGRNLIPLLFFEIEKIL 896
            MNHQSKRLWIESIQGSRRKSN                    SYLGRNLIPLLFFE  KIL
Sbjct: 1    MNHQSKRLWIESIQGSRRKSNFLFASVLFAGALGFFLVGFSSYLGRNLIPLLFFE--KIL 58

Query: 895  FIPQGIIMCFYGIAGLFFSFYFWCTIFFDVGSGYNQIDEKKGIICLFRWGFPGRTRRVYL 716
            FIPQGIIMCFYGIAGLFFSFYFWCTIFFDVGSGYNQIDEKKGIICLFRWGFPGRTRRVYL
Sbjct: 59   FIPQGIIMCFYGIAGLFFSFYFWCTIFFDVGSGYNQIDEKKGIICLFRWGFPGRTRRVYL 118

Query: 715  RFSIENVQMITMQVQKSLFSSHHVLYMKVRGLPDIPLARTGEKIHQKEMEQKAVELARFL 536
            RFSIENVQMITMQVQKSLFSSHHVLYMKVRGLPDIPLARTGEKIHQKEMEQKAVELARFL
Sbjct: 119  RFSIENVQMITMQVQKSLFSSHHVLYMKVRGLPDIPLARTGEKIHQKEMEQKAVELARFL 178

Query: 535  RVSIEGV 515
            RVSIEGV
Sbjct: 179  RVSIEGV 185


>ref|YP_001876587.1| photosystem I assembly protein ycf4 [Welwitschia mirabilis]
            gi|254814033|sp|B2Y1X0.1|YCF4_WELMI RecName:
            Full=Photosystem I assembly protein Ycf4
            gi|163311642|gb|ABY26800.1| photosystem I assembly
            protein ycf4 [Welwitschia mirabilis]
            gi|220983449|dbj|BAH11218.1| photosystem I assembly
            protein Ycf4 (chloroplast) [Welwitschia mirabilis]
          Length = 185

 Score =  265 bits (677), Expect = 3e-68
 Identities = 129/186 (69%), Positives = 149/186 (80%)
 Frame = -2

Query: 1075 MNHQSKRLWIESIQGSRRKSNXXXXXXXXXXXXXXXXXXXXSYLGRNLIPLLFFEIEKIL 896
            MN+QSKRLWIE IQGSRRKSN                    SYLGRNL+PLL    ++I+
Sbjct: 1    MNNQSKRLWIEPIQGSRRKSNFFFASILFGGALGFFLVGFSSYLGRNLLPLL--SSQQII 58

Query: 895  FIPQGIIMCFYGIAGLFFSFYFWCTIFFDVGSGYNQIDEKKGIICLFRWGFPGRTRRVYL 716
            F+PQGI+MCFYGIAGLFFS Y WCTIFF+VGSGYNQIDEK GI+CLFRWGFPGR RR++L
Sbjct: 59   FVPQGIVMCFYGIAGLFFSSYLWCTIFFNVGSGYNQIDEKTGIVCLFRWGFPGRNRRIFL 118

Query: 715  RFSIENVQMITMQVQKSLFSSHHVLYMKVRGLPDIPLARTGEKIHQKEMEQKAVELARFL 536
            RF ++NV MI M+VQ++LFSS H+LYMKV+GLPDIPLARTGE ++ KEMEQKA ELARFL
Sbjct: 119  RFPLKNVHMIKMEVQENLFSSRHILYMKVKGLPDIPLARTGENLNLKEMEQKAAELARFL 178

Query: 535  RVSIEG 518
             VSIEG
Sbjct: 179  HVSIEG 184


>ref|YP_002519965.1| putative heme-binding protein (chloroplast) [Ephedra equisetina]
           gi|220983566|dbj|BAH11333.1| putative heme-binding
           protein (chloroplast) [Ephedra equisetina]
          Length = 251

 Score =  258 bits (658), Expect = 5e-66
 Identities = 128/129 (99%), Positives = 128/129 (99%)
 Frame = -2

Query: 388 MNKSSSLVIHHIEVTQNRAAVSLRYVACFIVLPCLISISLEKCVESWVTFWWNTSSSKIL 209
           MNKSSSLVIHHIEVTQNRAAVSLRYVACFIVLPCLISISLEKCVESWVTFWWNTSSSKIL
Sbjct: 20  MNKSSSLVIHHIEVTQNRAAVSLRYVACFIVLPCLISISLEKCVESWVTFWWNTSSSKIL 79

Query: 208 DYLQEENNLVRVSQIEELLLFETTVEDFSETHLKKNFLFELYKKDCIQIVTHLGTNLLEF 29
           DYLQEENNLVRVSQIEELLLFETTVEDFSETHLKKNFLFELYKKDCIQIVTHLGTNLLEF
Sbjct: 80  DYLQEENNLVRVSQIEELLLFETTVEDFSETHLKKNFLFELYKKDCIQIVTHLGTNLLEF 139

Query: 28  IILSTFFFM 2
           IILSTF FM
Sbjct: 140 IILSTFLFM 148


>ref|YP_008082205.1| photosystem I assembly protein Ycf4 (chloroplast) [Gnetum montanum]
            gi|490345030|gb|AGL11050.1| photosystem I assembly
            protein Ycf4 (chloroplast) [Gnetum montanum]
          Length = 188

 Score =  249 bits (635), Expect = 2e-63
 Identities = 123/189 (65%), Positives = 142/189 (75%)
 Frame = -2

Query: 1084 MTYMNHQSKRLWIESIQGSRRKSNXXXXXXXXXXXXXXXXXXXXSYLGRNLIPLLFFEIE 905
            M  MNHQ+KRLWIE I+GSRRKSN                    SY+GRNL+P L     
Sbjct: 1    MISMNHQAKRLWIEPIKGSRRKSNFFFASIILGGALGFLLVGFSSYIGRNLVPPLLSH-- 58

Query: 904  KILFIPQGIIMCFYGIAGLFFSFYFWCTIFFDVGSGYNQIDEKKGIICLFRWGFPGRTRR 725
            +ILF+PQGI+MCFYGIAGLFFS Y WCTI F+VG GYN+IDEKKGI+C FRWGFPG+ RR
Sbjct: 59   QILFVPQGIVMCFYGIAGLFFSSYLWCTILFNVGGGYNKIDEKKGILCFFRWGFPGKNRR 118

Query: 724  VYLRFSIENVQMITMQVQKSLFSSHHVLYMKVRGLPDIPLARTGEKIHQKEMEQKAVELA 545
            V+LR  ++NVQ I M+VQ+SLF S HVLYMKV+GLPDIPLARTG+  +  EMEQKA ELA
Sbjct: 119  VFLRVPLKNVQTIKMEVQESLFYSRHVLYMKVKGLPDIPLARTGDHFNLSEMEQKAAELA 178

Query: 544  RFLRVSIEG 518
             FLRVSIEG
Sbjct: 179  HFLRVSIEG 187


>dbj|BAN16921.1| photosystem I assembly protein Ycf4 (chloroplast) [Gnetum ula]
          Length = 188

 Score =  249 bits (635), Expect = 2e-63
 Identities = 123/189 (65%), Positives = 142/189 (75%)
 Frame = -2

Query: 1084 MTYMNHQSKRLWIESIQGSRRKSNXXXXXXXXXXXXXXXXXXXXSYLGRNLIPLLFFEIE 905
            M  MNHQ+KRLWIE I+GSRRKSN                    SY+GRNL+P L     
Sbjct: 1    MISMNHQAKRLWIEPIKGSRRKSNLFFASIILGGALGFLLVGFSSYIGRNLVPPLLSH-- 58

Query: 904  KILFIPQGIIMCFYGIAGLFFSFYFWCTIFFDVGSGYNQIDEKKGIICLFRWGFPGRTRR 725
            +ILF+PQGI+MCFYGIAGLFFS Y WCTI F+VG GYN+IDEKKGI+C FRWGFPG+ RR
Sbjct: 59   QILFVPQGIVMCFYGIAGLFFSSYLWCTILFNVGGGYNKIDEKKGILCFFRWGFPGKNRR 118

Query: 724  VYLRFSIENVQMITMQVQKSLFSSHHVLYMKVRGLPDIPLARTGEKIHQKEMEQKAVELA 545
            V+LR  ++NVQ I M+VQ+SLF S HVLYMKV+GLPDIPLARTG+  +  EMEQKA ELA
Sbjct: 119  VFLRVPLKNVQTIKMEVQESLFYSRHVLYMKVKGLPDIPLARTGDHFNLSEMEQKAAELA 178

Query: 544  RFLRVSIEG 518
             FLRVSIEG
Sbjct: 179  HFLRVSIEG 187


>ref|YP_002905092.1| photosystem I assembly protein ycf4 [Picea sitchensis]
            gi|523420642|ref|YP_008082816.1| photosystem I assembly
            protein Ycf4 (chloroplast) [Picea abies]
            gi|226875302|gb|ACO89041.1| photosystem I assembly
            protein ycf4 [Picea sitchensis]
            gi|502524850|emb|CCW23100.1| photosystem I assembly
            protein Ycf4 (chloroplast) [Picea abies]
          Length = 184

 Score =  221 bits (562), Expect = 7e-55
 Identities = 107/186 (57%), Positives = 138/186 (74%)
 Frame = -2

Query: 1075 MNHQSKRLWIESIQGSRRKSNXXXXXXXXXXXXXXXXXXXXSYLGRNLIPLLFFEIEKIL 896
            MN++SK LWIE I GSR++SN                    SY G NLIPLL    ++IL
Sbjct: 1    MNNRSKWLWIEPITGSRKRSNFFWACILFLGSLGFFLVGISSYFGENLIPLL--SSQEIL 58

Query: 895  FIPQGIIMCFYGIAGLFFSFYFWCTIFFDVGSGYNQIDEKKGIICLFRWGFPGRTRRVYL 716
            F+PQGI+MCFYGIAGLF S Y WCTI FDVGSGYN+ D++KGI+CLFRWGFPG+ RR++L
Sbjct: 59   FVPQGIVMCFYGIAGLFISSYLWCTILFDVGSGYNKFDKRKGIVCLFRWGFPGKNRRIFL 118

Query: 715  RFSIENVQMITMQVQKSLFSSHHVLYMKVRGLPDIPLARTGEKIHQKEMEQKAVELARFL 536
            RF ++++QMI M++Q+ + S   VLYM+++G  DIPLARTG+ ++ +E+EQKA E ARFL
Sbjct: 119  RFLMKDIQMIKMEIQEGI-SPRRVLYMEIKGRQDIPLARTGDNLNLREIEQKAAESARFL 177

Query: 535  RVSIEG 518
            RVSIEG
Sbjct: 178  RVSIEG 183


>gb|ACP50778.1| photosystem I assembly protein ycf4 [Pinus ponderosa]
          Length = 184

 Score =  219 bits (559), Expect = 2e-54
 Identities = 107/186 (57%), Positives = 136/186 (73%)
 Frame = -2

Query: 1075 MNHQSKRLWIESIQGSRRKSNXXXXXXXXXXXXXXXXXXXXSYLGRNLIPLLFFEIEKIL 896
            MN +SK LWIE I GSR++SN                    SY G NLIPLL    ++IL
Sbjct: 1    MNRRSKWLWIEPITGSRKRSNFFWACILFLGSLGFFLVGISSYFGENLIPLL--SSQQIL 58

Query: 895  FIPQGIIMCFYGIAGLFFSFYFWCTIFFDVGSGYNQIDEKKGIICLFRWGFPGRTRRVYL 716
            F+PQGI+MCFYGIAGLF S Y WCTI F+VGSGYN+ D+KKGI+CLFRWGFPGR RR++L
Sbjct: 59   FVPQGIVMCFYGIAGLFISSYLWCTILFNVGSGYNKFDKKKGIVCLFRWGFPGRNRRIFL 118

Query: 715  RFSIENVQMITMQVQKSLFSSHHVLYMKVRGLPDIPLARTGEKIHQKEMEQKAVELARFL 536
            RF ++++QMI M++Q+ + S   VLYM+++G  DIPL RTG+ ++ +E+EQKA E ARFL
Sbjct: 119  RFLMKDIQMIKMEIQEGI-SPRRVLYMEIKGRQDIPLTRTGDNVNLREIEQKAAESARFL 177

Query: 535  RVSIEG 518
            RVSIEG
Sbjct: 178  RVSIEG 183


>ref|YP_004891736.1| photosystem I assembly protein Ycf4 (chloroplast) [Picea
            morrisonicola] gi|347977517|dbj|BAK86474.1| photosystem I
            assembly protein Ycf4 (chloroplast) [Picea morrisonicola]
          Length = 184

 Score =  218 bits (555), Expect = 5e-54
 Identities = 106/186 (56%), Positives = 137/186 (73%)
 Frame = -2

Query: 1075 MNHQSKRLWIESIQGSRRKSNXXXXXXXXXXXXXXXXXXXXSYLGRNLIPLLFFEIEKIL 896
            MN++SK LWIE I GSR++SN                    SY G NLIPLL    ++IL
Sbjct: 1    MNNRSKWLWIEPITGSRKRSNFFWACILFLGSLGFFLVGISSYFGENLIPLL--SSQEIL 58

Query: 895  FIPQGIIMCFYGIAGLFFSFYFWCTIFFDVGSGYNQIDEKKGIICLFRWGFPGRTRRVYL 716
            F+PQGI+MCFYGIAGLF S Y WCTI FDVGSGYN+ D++KGI+CLFRWGFPG+ RR++ 
Sbjct: 59   FVPQGIVMCFYGIAGLFISSYLWCTILFDVGSGYNKFDKRKGIVCLFRWGFPGKNRRIFP 118

Query: 715  RFSIENVQMITMQVQKSLFSSHHVLYMKVRGLPDIPLARTGEKIHQKEMEQKAVELARFL 536
            RF ++++QMI M++Q+ + S   VLYM+++G  DIPLARTG+ ++ +E+EQKA E ARFL
Sbjct: 119  RFLMKDIQMIKMEIQEGI-SPRRVLYMEIKGRQDIPLARTGDNLNLREIEQKAAESARFL 177

Query: 535  RVSIEG 518
            RVSIEG
Sbjct: 178  RVSIEG 183


>ref|YP_003934196.1| photosystem I assembly protein Ycf4 [Cedrus deodara]
            gi|228017083|gb|ACP51905.1| photosystem I assembly
            protein ycf4 [Cedrus deodara]
            gi|307683271|dbj|BAJ19579.1| photosystem I assembly
            protein Ycf4 (chloroplast) [Cedrus deodara]
          Length = 184

 Score =  218 bits (555), Expect = 5e-54
 Identities = 108/186 (58%), Positives = 135/186 (72%)
 Frame = -2

Query: 1075 MNHQSKRLWIESIQGSRRKSNXXXXXXXXXXXXXXXXXXXXSYLGRNLIPLLFFEIEKIL 896
            MN QSK LWIE I GSR++SN                    SY G +LIPLL    ++IL
Sbjct: 1    MNRQSKWLWIEPITGSRKRSNFFWACILFLGSLGFFLVGISSYFGEDLIPLL--SSQQIL 58

Query: 895  FIPQGIIMCFYGIAGLFFSFYFWCTIFFDVGSGYNQIDEKKGIICLFRWGFPGRTRRVYL 716
            FIPQGI+MCFYGIAGLF S Y WCTI FDVGSGYN+ D++KGI+CLFRWGFPGR RR++L
Sbjct: 59   FIPQGIVMCFYGIAGLFISSYLWCTILFDVGSGYNKFDKRKGIVCLFRWGFPGRNRRIFL 118

Query: 715  RFSIENVQMITMQVQKSLFSSHHVLYMKVRGLPDIPLARTGEKIHQKEMEQKAVELARFL 536
            RF ++++QMI  +VQ+ + S   VLYM+++G  DIPL RTG+ ++ +E+EQKA E ARFL
Sbjct: 119  RFLMKDIQMIKTEVQEGI-SPRRVLYMEIKGRQDIPLTRTGDNLNLREIEQKAAESARFL 177

Query: 535  RVSIEG 518
            RVSIEG
Sbjct: 178  RVSIEG 183


>ref|YP_008965225.1| photosystem I assembly protein Ycf4 (chloroplast) [Calocedrus
            formosana] gi|482841053|dbj|BAN16987.1| photosystem I
            assembly protein Ycf4 (chloroplast) [Calocedrus
            formosana] gi|563317811|dbj|BAO19909.1| photosystem I
            assembly protein Ycf4 (chloroplast) [Calocedrus
            formosana]
          Length = 184

 Score =  217 bits (552), Expect = 1e-53
 Identities = 108/186 (58%), Positives = 135/186 (72%)
 Frame = -2

Query: 1075 MNHQSKRLWIESIQGSRRKSNXXXXXXXXXXXXXXXXXXXXSYLGRNLIPLLFFEIEKIL 896
            MN +SK LWIE I+GSR+ SN                    SYLGRNLIPLL    ++IL
Sbjct: 1    MNRRSKWLWIEPIKGSRKISNFFFACLLFLGSLGFFVVGISSYLGRNLIPLL--SSQQIL 58

Query: 895  FIPQGIIMCFYGIAGLFFSFYFWCTIFFDVGSGYNQIDEKKGIICLFRWGFPGRTRRVYL 716
            F+PQGI+MCFYGIAGLF S Y WCTI  +VGSGYN+ DEK+G++CLFRWGFPGR RR++L
Sbjct: 59   FVPQGIVMCFYGIAGLFISSYLWCTILCNVGSGYNKFDEKEGVVCLFRWGFPGRNRRIFL 118

Query: 715  RFSIENVQMITMQVQKSLFSSHHVLYMKVRGLPDIPLARTGEKIHQKEMEQKAVELARFL 536
            RF ++++Q I M+VQ+ +F    V+YM+++G  DIPL RT E +  +EMEQKA ELARFL
Sbjct: 119  RFLMKDIQAIKMEVQEGIF-PRRVIYMEIKGQQDIPLTRTEENLTLREMEQKAAELARFL 177

Query: 535  RVSIEG 518
            RVSIEG
Sbjct: 178  RVSIEG 183


>gb|AET48471.1| photosystem I assembly protein ycf4 (chloroplast) [Pinus glabra]
          Length = 184

 Score =  216 bits (551), Expect = 1e-53
 Identities = 107/186 (57%), Positives = 136/186 (73%)
 Frame = -2

Query: 1075 MNHQSKRLWIESIQGSRRKSNXXXXXXXXXXXXXXXXXXXXSYLGRNLIPLLFFEIEKIL 896
            MN +SK LWIE I GSR++SN                    SY G NLIPLL    ++IL
Sbjct: 1    MNRRSKWLWIEPITGSRKRSNFFWACILFLGXLGFFLVGISSYFGENLIPLL--SSQQIL 58

Query: 895  FIPQGIIMCFYGIAGLFFSFYFWCTIFFDVGSGYNQIDEKKGIICLFRWGFPGRTRRVYL 716
            F+PQGI+MCFYGIAGLF S Y WCTI F+VGSGYN+ D+KKGI+CLFRWGFPG  RR++L
Sbjct: 59   FVPQGIVMCFYGIAGLFISSYLWCTILFNVGSGYNKFDKKKGIVCLFRWGFPGINRRIFL 118

Query: 715  RFSIENVQMITMQVQKSLFSSHHVLYMKVRGLPDIPLARTGEKIHQKEMEQKAVELARFL 536
            RF ++++QMI M++Q+ + S   VLYM+++G  DIPL RTG+ ++ +E+EQKA E ARFL
Sbjct: 119  RFLMKDIQMIKMEIQEGI-SPRRVLYMEIKGRQDIPLTRTGDNVNLREIEQKAAESARFL 177

Query: 535  RVSIEG 518
            RVSIEG
Sbjct: 178  RVSIEG 183


>ref|YP_004276385.1| photosystem I assembly protein ycf4 [Pinus nelsonii]
            gi|228016832|gb|ACP51658.1| photosystem I assembly
            protein ycf4 [Pinus attenuata]
            gi|323522703|gb|ADX94951.1| photosystem I assembly
            protein ycf4 [Pinus nelsonii] gi|356999226|gb|AET47107.1|
            photosystem I assembly protein ycf4 (chloroplast) [Pinus
            muricata] gi|357000536|gb|AET48399.1| photosystem I
            assembly protein ycf4 (chloroplast) [Pinus greggii]
            gi|357001123|gb|AET48978.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus hartwegii]
          Length = 184

 Score =  216 bits (551), Expect = 1e-53
 Identities = 106/186 (56%), Positives = 135/186 (72%)
 Frame = -2

Query: 1075 MNHQSKRLWIESIQGSRRKSNXXXXXXXXXXXXXXXXXXXXSYLGRNLIPLLFFEIEKIL 896
            MN +SK LWIE I GSR++SN                    SY G NLIPLL    ++IL
Sbjct: 1    MNRRSKWLWIEPITGSRKRSNFFWACILFLGSLGFFLVGISSYFGENLIPLL--SSQQIL 58

Query: 895  FIPQGIIMCFYGIAGLFFSFYFWCTIFFDVGSGYNQIDEKKGIICLFRWGFPGRTRRVYL 716
            F+PQGI+MCFYGIAGLF S Y WCTI F+VGSGYN+ D+KKGI+CLFRWGFPG  RR++L
Sbjct: 59   FVPQGIVMCFYGIAGLFISSYLWCTILFNVGSGYNKFDKKKGIVCLFRWGFPGINRRIFL 118

Query: 715  RFSIENVQMITMQVQKSLFSSHHVLYMKVRGLPDIPLARTGEKIHQKEMEQKAVELARFL 536
            RF ++++QMI M++Q+ + S   VLYM+++G  DIPL RTG+ ++ +E+EQKA E ARFL
Sbjct: 119  RFLMKDIQMIKMEIQEGI-SPRRVLYMEIKGRQDIPLTRTGDNVNLREIEQKAAESARFL 177

Query: 535  RVSIEG 518
            RVSIEG
Sbjct: 178  RVSIEG 183


>ref|YP_001806632.1| photosystem I assembly protein Ycf4 [Cryptomeria japonica]
            gi|171854890|dbj|BAG16630.1| photosystem I assembly
            protein ycf4 [Cryptomeria japonica]
            gi|239794259|dbj|BAH73256.1| photosystem I assembly
            protein ycf4 [Cryptomeria japonica]
            gi|239794341|dbj|BAH73337.1| photosystem I assembly
            protein ycf4 [Cryptomeria japonica]
          Length = 184

 Score =  216 bits (551), Expect = 1e-53
 Identities = 109/186 (58%), Positives = 134/186 (72%)
 Frame = -2

Query: 1075 MNHQSKRLWIESIQGSRRKSNXXXXXXXXXXXXXXXXXXXXSYLGRNLIPLLFFEIEKIL 896
            MN +SK LWIE I GSR+ SN                    SYLGRNLIPLL    ++IL
Sbjct: 1    MNRRSKWLWIEPITGSRKISNFFFACLLFLGSLGFFVVGISSYLGRNLIPLL--SSQQIL 58

Query: 895  FIPQGIIMCFYGIAGLFFSFYFWCTIFFDVGSGYNQIDEKKGIICLFRWGFPGRTRRVYL 716
            F+PQGI+MCFYGIAGLF S Y WCTI  +VGSGYN+ DEK+G++CLFRWGFPGR RR++L
Sbjct: 59   FVPQGIVMCFYGIAGLFISSYLWCTILCNVGSGYNKFDEKEGVVCLFRWGFPGRNRRIFL 118

Query: 715  RFSIENVQMITMQVQKSLFSSHHVLYMKVRGLPDIPLARTGEKIHQKEMEQKAVELARFL 536
            +F ++++Q I M+VQ+ LF    VLYM+++G  DIPL RT E +  +EMEQKA ELARFL
Sbjct: 119  QFRMKDIQAIKMEVQEGLF-PRRVLYMEIKGQQDIPLTRTEENLTLREMEQKAAELARFL 177

Query: 535  RVSIEG 518
            RVSIEG
Sbjct: 178  RVSIEG 183


>ref|YP_008965041.1| photosystem I assembly protein Ycf4 (chloroplast) [Agathis dammara]
            gi|347977310|dbj|BAK86772.1| photosystem I assembly
            protein Ycf4 (chloroplast) [Agathis dammara]
            gi|354991255|gb|AER45501.1| ycf4 (chloroplast) [Agathis
            australis] gi|563317625|dbj|BAO19725.1| photosystem I
            assembly protein Ycf4 (chloroplast) [Agathis dammara]
          Length = 184

 Score =  215 bits (548), Expect = 3e-53
 Identities = 110/186 (59%), Positives = 133/186 (71%)
 Frame = -2

Query: 1075 MNHQSKRLWIESIQGSRRKSNXXXXXXXXXXXXXXXXXXXXSYLGRNLIPLLFFEIEKIL 896
            MN +SK LWIE I GSR+ SN                    SYLGRNLIPLL    ++IL
Sbjct: 1    MNRRSKWLWIEPITGSRKMSNFFWACILFLGSLGFFLVGISSYLGRNLIPLL--SSQQIL 58

Query: 895  FIPQGIIMCFYGIAGLFFSFYFWCTIFFDVGSGYNQIDEKKGIICLFRWGFPGRTRRVYL 716
            FIPQGI+MCFYGIAGLF S Y WCTI  +VGSGYN+ DEK+GI+CLFRWGFPGR RR++L
Sbjct: 59   FIPQGIVMCFYGIAGLFISSYLWCTILCNVGSGYNKFDEKEGIVCLFRWGFPGRNRRIFL 118

Query: 715  RFSIENVQMITMQVQKSLFSSHHVLYMKVRGLPDIPLARTGEKIHQKEMEQKAVELARFL 536
            +F I+++Q I M+VQ+ LF    VLYM+++G  +IPL RT +    +EMEQKA ELARFL
Sbjct: 119  QFLIKDIQAIKMEVQEGLF-PRRVLYMEIKGQQEIPLTRTEDNFTLREMEQKAAELARFL 177

Query: 535  RVSIEG 518
            RVSIEG
Sbjct: 178  RVSIEG 183


>ref|YP_008082143.1| photosystem I assembly protein ycf4 (chloroplast) [Cunninghamia
            lanceolata] gi|490344960|gb|AGL10989.1| photosystem I
            assembly protein ycf4 (chloroplast) [Cunninghamia
            lanceolata]
          Length = 184

 Score =  215 bits (547), Expect = 4e-53
 Identities = 107/186 (57%), Positives = 133/186 (71%)
 Frame = -2

Query: 1075 MNHQSKRLWIESIQGSRRKSNXXXXXXXXXXXXXXXXXXXXSYLGRNLIPLLFFEIEKIL 896
            MN +SK LWIE I GSR+ SN                    SYLGRNLIP  F   ++IL
Sbjct: 1    MNRRSKWLWIEPITGSRKMSNFFFACLLFFGSLGFFVVGISSYLGRNLIP--FLSSQQIL 58

Query: 895  FIPQGIIMCFYGIAGLFFSFYFWCTIFFDVGSGYNQIDEKKGIICLFRWGFPGRTRRVYL 716
            F+PQGI+MCFYGI+GLF S Y WCTI  +VGSGYN+ DEK+G++CLFRWGFPGR RR++L
Sbjct: 59   FVPQGIVMCFYGISGLFISSYLWCTILCNVGSGYNKFDEKEGVVCLFRWGFPGRNRRIFL 118

Query: 715  RFSIENVQMITMQVQKSLFSSHHVLYMKVRGLPDIPLARTGEKIHQKEMEQKAVELARFL 536
            +F ++++Q I M+VQ+ LF    VLYM+++G  DIPL RT E +  +EMEQKA ELARFL
Sbjct: 119  QFLMKDIQAIKMEVQEGLF-PRRVLYMEIKGQQDIPLTRTEENLTLREMEQKAAELARFL 177

Query: 535  RVSIEG 518
            RVSIEG
Sbjct: 178  RVSIEG 183


>ref|YP_004891527.1| photosystem I assembly protein Ycf4 (chloroplast) [Taiwania
            cryptomerioides] gi|512721829|ref|YP_008082444.1|
            photosystem I assembly protein Ycf4 (chloroplast)
            [Taiwania flousiana] gi|347977429|dbj|BAK86860.1|
            photosystem I assembly protein Ycf4 (chloroplast)
            [Taiwania cryptomerioides] gi|490345302|gb|AGL11290.1|
            photosystem I assembly protein Ycf4 (chloroplast)
            [Taiwania flousiana]
          Length = 184

 Score =  215 bits (547), Expect = 4e-53
 Identities = 107/186 (57%), Positives = 135/186 (72%)
 Frame = -2

Query: 1075 MNHQSKRLWIESIQGSRRKSNXXXXXXXXXXXXXXXXXXXXSYLGRNLIPLLFFEIEKIL 896
            MN +SK LWIE I GSR+ SN                    SYLGRNLIPLL    ++IL
Sbjct: 1    MNRRSKWLWIEPITGSRKISNFFFACLLFLGSLGFFVVGISSYLGRNLIPLL--SSQQIL 58

Query: 895  FIPQGIIMCFYGIAGLFFSFYFWCTIFFDVGSGYNQIDEKKGIICLFRWGFPGRTRRVYL 716
            F+PQGI+MCFYGIAGLF S Y WCTIF +VGSGYN+ DEK+G++CLFRWGFPGR RR++L
Sbjct: 59   FVPQGIVMCFYGIAGLFISSYLWCTIFCNVGSGYNKFDEKEGVVCLFRWGFPGRNRRIFL 118

Query: 715  RFSIENVQMITMQVQKSLFSSHHVLYMKVRGLPDIPLARTGEKIHQKEMEQKAVELARFL 536
            +F ++++Q I M+VQ+ +F    VLY++++G  DIPL RT + +  +EMEQKA ELARFL
Sbjct: 119  QFLMKDIQAIKMEVQEGIF-PRRVLYIEIKGQQDIPLTRTEQNLTLREMEQKAAELARFL 177

Query: 535  RVSIEG 518
            RVSIEG
Sbjct: 178  RVSIEG 183


>ref|YP_002905154.1| photosystem I assembly protein ycf4 [Pinus contorta]
            gi|226875365|gb|ACO89103.1| photosystem I assembly
            protein ycf4 [Pinus contorta]
          Length = 184

 Score =  215 bits (547), Expect = 4e-53
 Identities = 105/186 (56%), Positives = 135/186 (72%)
 Frame = -2

Query: 1075 MNHQSKRLWIESIQGSRRKSNXXXXXXXXXXXXXXXXXXXXSYLGRNLIPLLFFEIEKIL 896
            MN +SK LWIE I GSR++SN                    SY G NLIPLL    ++IL
Sbjct: 1    MNRRSKWLWIEPITGSRKRSNFFWACILFLGSLGFFLVGISSYFGENLIPLL--SSQQIL 58

Query: 895  FIPQGIIMCFYGIAGLFFSFYFWCTIFFDVGSGYNQIDEKKGIICLFRWGFPGRTRRVYL 716
            F+PQGI+MCFYGIAGLF S Y WCTI F+VGSGYN+ D+KKGI+CLFRWGFPG  RR++L
Sbjct: 59   FVPQGIVMCFYGIAGLFISSYLWCTILFNVGSGYNKFDKKKGIVCLFRWGFPGINRRIFL 118

Query: 715  RFSIENVQMITMQVQKSLFSSHHVLYMKVRGLPDIPLARTGEKIHQKEMEQKAVELARFL 536
            RF +++++MI M++Q+ + S   VLYM+++G  DIPL RTG+ ++ +E+EQKA E ARFL
Sbjct: 119  RFLMKDIRMIKMEIQEGI-SPRRVLYMEIKGRQDIPLTRTGDNVNLREIEQKAAESARFL 177

Query: 535  RVSIEG 518
            RVSIEG
Sbjct: 178  RVSIEG 183


>gb|AET46032.1| photosystem I assembly protein ycf4 (chloroplast) [Pinus radiata]
          Length = 184

 Score =  214 bits (546), Expect = 5e-53
 Identities = 105/186 (56%), Positives = 134/186 (72%)
 Frame = -2

Query: 1075 MNHQSKRLWIESIQGSRRKSNXXXXXXXXXXXXXXXXXXXXSYLGRNLIPLLFFEIEKIL 896
            MN +SK LWIE I GSR++SN                    SY G NLIPLL    ++IL
Sbjct: 1    MNRRSKWLWIEPITGSRKRSNFFWACILFLGSLGFFLVGISSYFGENLIPLL--SSQQIL 58

Query: 895  FIPQGIIMCFYGIAGLFFSFYFWCTIFFDVGSGYNQIDEKKGIICLFRWGFPGRTRRVYL 716
            F+PQGI+MCFYGIAGLF S Y WCTI F+VGSGYN+ D+KKGI+CLFRWGFPG  RR++ 
Sbjct: 59   FVPQGIVMCFYGIAGLFISSYLWCTILFNVGSGYNKFDKKKGIVCLFRWGFPGINRRIFX 118

Query: 715  RFSIENVQMITMQVQKSLFSSHHVLYMKVRGLPDIPLARTGEKIHQKEMEQKAVELARFL 536
            RF ++++QMI M++Q+ + S   VLYM+++G  DIPL RTG+ ++ +E+EQKA E ARFL
Sbjct: 119  RFLMKDIQMIKMEIQEGI-SPRRVLYMEIKGRQDIPLTRTGDNVNLREIEQKAAESARFL 177

Query: 535  RVSIEG 518
            RVSIEG
Sbjct: 178  RVSIEG 183


>ref|YP_004276315.1| photosystem I assembly protein ycf4 [Pinus monophylla]
            gi|228016704|gb|ACP51532.1| photosystem I assembly
            protein ycf4 [Pinus aristata] gi|323522539|gb|ADX94881.1|
            photosystem I assembly protein ycf4 [Pinus monophylla]
            gi|356998209|gb|AET46104.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus quadrifolia]
            gi|356998788|gb|AET46675.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus pinceana]
            gi|356999516|gb|AET47393.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus maximartinezii]
            gi|357000100|gb|AET47969.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus johannis]
            gi|357000901|gb|AET48759.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus edulis]
          Length = 184

 Score =  214 bits (545), Expect = 7e-53
 Identities = 105/186 (56%), Positives = 134/186 (72%)
 Frame = -2

Query: 1075 MNHQSKRLWIESIQGSRRKSNXXXXXXXXXXXXXXXXXXXXSYLGRNLIPLLFFEIEKIL 896
            MN +SK LWIE I GSR++SN                    SY G NLIPLL    ++IL
Sbjct: 1    MNRRSKWLWIEPITGSRKRSNFFWACILFLGSLGFFLVGISSYFGENLIPLL--SSQQIL 58

Query: 895  FIPQGIIMCFYGIAGLFFSFYFWCTIFFDVGSGYNQIDEKKGIICLFRWGFPGRTRRVYL 716
            F+PQGI+MCFYGIAGLF S Y WCTI F+VGSGYN+ D+KKGI+CLFRWGFPG  RR++ 
Sbjct: 59   FVPQGIVMCFYGIAGLFISSYLWCTILFNVGSGYNKFDKKKGIVCLFRWGFPGINRRIFS 118

Query: 715  RFSIENVQMITMQVQKSLFSSHHVLYMKVRGLPDIPLARTGEKIHQKEMEQKAVELARFL 536
            RF ++++QMI M++Q+ + S   VLYM+++G  DIPL RTG+ ++ +E+EQKA E ARFL
Sbjct: 119  RFLMKDIQMIKMEIQEGI-SPRRVLYMEIKGRQDIPLTRTGDNVNLREIEQKAAESARFL 177

Query: 535  RVSIEG 518
            RVSIEG
Sbjct: 178  RVSIEG 183


>ref|NP_042405.1| photosystem I assembly protein Ycf4 [Pinus thunbergii]
            gi|512721654|ref|YP_008082272.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus massoniana]
            gi|512721728|ref|YP_008082345.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus taeda]
            gi|1175646|sp|P41620.1|YCF4_PINTH RecName:
            Full=Photosystem I assembly protein Ycf4
            gi|1262645|dbj|BAA04362.1| ORF184 [Pinus thunbergii]
            gi|228016007|gb|ACP50846.1| photosystem I assembly
            protein ycf4 [Pinus resinosa] gi|228016320|gb|ACP51154.1|
            photosystem I assembly protein ycf4 [Pinus taeda]
            gi|228016391|gb|ACP51224.1| photosystem I assembly
            protein ycf4 [Pinus thunbergii]
            gi|228016458|gb|ACP51290.1| photosystem I assembly
            protein ycf4 [Pinus torreyana subsp. insularis]
            gi|228016522|gb|ACP51353.1| photosystem I assembly
            protein ycf4 [Pinus torreyana subsp. torreyana]
            gi|228017021|gb|ACP51844.1| photosystem I assembly
            protein ycf4 [Pinus canariensis]
            gi|228017196|gb|ACP52016.1| photosystem I assembly
            protein ycf4 [Pinus leiophylla var. chihuahuana]
            gi|228017459|gb|ACP52275.1| photosystem I assembly
            protein ycf4 [Pinus merkusii] gi|228017713|gb|ACP52525.1|
            photosystem I assembly protein ycf4 [Pinus pinaster]
            gi|356996541|gb|AET44459.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus leiophylla var.
            chihuahuana] gi|356996760|gb|AET44675.1| photosystem I
            assembly protein ycf4 (chloroplast) [Pinus caribaea]
            gi|356996905|gb|AET44818.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus brutia]
            gi|356996977|gb|AET44889.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus arizonica]
            gi|356997122|gb|AET45032.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus yunnanensis]
            gi|356997192|gb|AET45101.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus yecorensis]
            gi|356997481|gb|AET45386.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus tropicalis]
            gi|356997627|gb|AET45530.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus sylvestris]
            gi|356997917|gb|AET45816.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus roxburghii]
            gi|356997990|gb|AET45888.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus rigida]
            gi|356998282|gb|AET46176.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus pungens]
            gi|356998569|gb|AET46459.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus ponderosa var.
            scopulorum] gi|356998642|gb|AET46531.1| photosystem I
            assembly protein ycf4 (chloroplast) [Pinus ponderosa var.
            benthamiana] gi|356998715|gb|AET46603.1| photosystem I
            assembly protein ycf4 (chloroplast) [Pinus pinea]
            gi|356998934|gb|AET46819.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus palustris]
            gi|356999007|gb|AET46891.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus occidentalis]
            gi|356999080|gb|AET46963.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus pseudostrobus var.
            apulcensis] gi|356999153|gb|AET47035.1| photosystem I
            assembly protein ycf4 (chloroplast) [Pinus nigra]
            gi|356999298|gb|AET47178.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus mugo]
            gi|356999443|gb|AET47321.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus montezumae]
            gi|356999589|gb|AET47465.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus massoniana]
            gi|356999662|gb|AET47537.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus lumholtzii]
            gi|356999735|gb|AET47609.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus leiophylla]
            gi|356999808|gb|AET47681.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus lawsonii]
            gi|356999881|gb|AET47753.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus pringlei]
            gi|356999954|gb|AET47825.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus latteri]
            gi|357000027|gb|AET47897.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus kesiya]
            gi|357000173|gb|AET48041.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus jeffreyi]
            gi|357000246|gb|AET48113.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus hwangshanensis]
            gi|357000319|gb|AET48185.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus heldreichii]
            gi|357000391|gb|AET48256.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus hartwegii]
            gi|357000464|gb|AET48328.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus halepensis]
            gi|357000682|gb|AET48543.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus fragilissima]
            gi|357000755|gb|AET48615.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus engelmannii]
            gi|357000828|gb|AET48687.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus elliottii]
            gi|357000974|gb|AET48831.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus echinata]
            gi|357001048|gb|AET48904.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus douglasiana]
            gi|357001269|gb|AET49122.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus devoniana]
            gi|357001342|gb|AET49194.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus densata]
            gi|357001702|gb|AET49549.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus cubensis]
            gi|357001848|gb|AET49693.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus arizonica var. cooperi]
            gi|490345116|gb|AGL11118.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus massoniana]
            gi|490345198|gb|AGL11191.1| photosystem I assembly
            protein ycf4 (chloroplast) [Pinus taeda]
          Length = 184

 Score =  214 bits (544), Expect = 8e-53
 Identities = 105/186 (56%), Positives = 134/186 (72%)
 Frame = -2

Query: 1075 MNHQSKRLWIESIQGSRRKSNXXXXXXXXXXXXXXXXXXXXSYLGRNLIPLLFFEIEKIL 896
            MN +SK LWIE I GSR++SN                    SY G NLIPLL    ++IL
Sbjct: 1    MNRRSKWLWIEPITGSRKRSNFFWACILFLGSLGFFLVGISSYFGENLIPLL--SSQQIL 58

Query: 895  FIPQGIIMCFYGIAGLFFSFYFWCTIFFDVGSGYNQIDEKKGIICLFRWGFPGRTRRVYL 716
            F+PQGI+MCFYGIAGLF S Y WCTI F+VGSGYN+ D+KKGI+CLFRWGFPG  RR++ 
Sbjct: 59   FVPQGIVMCFYGIAGLFISSYLWCTILFNVGSGYNKFDKKKGIVCLFRWGFPGINRRIFP 118

Query: 715  RFSIENVQMITMQVQKSLFSSHHVLYMKVRGLPDIPLARTGEKIHQKEMEQKAVELARFL 536
            RF ++++QMI M++Q+ + S   VLYM+++G  DIPL RTG+ ++ +E+EQKA E ARFL
Sbjct: 119  RFLMKDIQMIKMEIQEGI-SPRRVLYMEIKGRQDIPLTRTGDNVNLREIEQKAAESARFL 177

Query: 535  RVSIEG 518
            RVSIEG
Sbjct: 178  RVSIEG 183


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