BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00013841
         (1091 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADE75749.1| unknown [Picea sitchensis]                             276   1e-71
ref|XP_001783243.1| predicted protein [Physcomitrella patens] gi...   218   4e-54
ref|XP_002967805.1| hypothetical protein SELMODRAFT_440021 [Sela...   217   6e-54
ref|XP_002981721.1| hypothetical protein SELMODRAFT_421246 [Sela...   217   6e-54
ref|XP_006843762.1| hypothetical protein AMTR_s00007p00238780 [A...   208   3e-51
ref|XP_002268721.2| PREDICTED: replication protein A 32 kDa subu...   198   3e-48
emb|CBI17841.3| unnamed protein product [Vitis vinifera]              197   5e-48
gb|EOY29191.1| Replicon protein A2, putative isoform 1 [Theobrom...   190   1e-45
ref|XP_006361577.1| PREDICTED: replication protein A 32 kDa subu...   185   2e-44
ref|XP_006408362.1| hypothetical protein EUTSA_v10021296mg [Eutr...   182   3e-43
gb|EOY29192.1| Replicon protein A2, putative isoform 2 [Theobrom...   181   6e-43
ref|NP_566188.1| replication protein RPA32B [Arabidopsis thalian...   179   2e-42
ref|NP_001189796.1| replication protein RPA32B [Arabidopsis thal...   179   2e-42
ref|XP_002884345.1| hypothetical protein ARALYDRAFT_477538 [Arab...   178   4e-42
ref|XP_006298263.1| hypothetical protein CARUB_v10014327mg [Caps...   177   5e-42
ref|XP_004242927.1| PREDICTED: replication protein A 32 kDa subu...   177   9e-42
ref|XP_002880588.1| ATRPA2/ROR1/RPA2 [Arabidopsis lyrata subsp. ...   177   9e-42
gb|AAF26967.1|AC018363_12 putative replication factor A [Arabido...   177   9e-42
ref|XP_006294695.1| hypothetical protein CARUB_v10023731mg, part...   174   4e-41
ref|XP_006404980.1| hypothetical protein EUTSA_v10000282mg [Eutr...   174   6e-41

>gb|ADE75749.1| unknown [Picea sitchensis]
          Length = 281

 Score =  276 bits (706), Expect = 1e-71
 Identities = 139/219 (63%), Positives = 167/219 (76%)
 Frame = +3

Query: 39  FTVKTLNPKMVTLVGRVTNKEERVTDVSFQLDDGTGRMEVKRWVNDNAEVSEMAAVQDGT 218
           FT+  ++   VTLVG V NKEERVTDVSF LDDGTGRMEVKRWVND  E +EMA VQ+G+
Sbjct: 66  FTIDGVDVNNVTLVGMVFNKEERVTDVSFYLDDGTGRMEVKRWVNDAMESAEMADVQNGS 125

Query: 219 YVRVHGHLRSFQGKKNINAFSVKPVTDFNEITFHFLECIYIHLHNVKAQGGSVVPNISSP 398
           YVRVHGHLRSFQ KK +NAFSV+PVTDFNE+TFH LECI++HL+N+K QGG+  PN +SP
Sbjct: 126 YVRVHGHLRSFQNKKLVNAFSVRPVTDFNEVTFHSLECIFVHLYNMKVQGGATQPNSASP 185

Query: 399 AVKVAPTTPSAGLAQANQNSFASPVINRGGGAKAFYDRVRDIFEEPQHLALEQGVHIDEI 578
             K  P TP +     NQ  F SP     GGAK     V+ IFEEP +LA+E GVH+D++
Sbjct: 186 VAK-GPPTPFSNTPSHNQ--FMSPGPVSVGGAKDLNRMVQSIFEEPANLAIEHGVHVDDV 242

Query: 579 ARRLPGYTKQQISDAIVFLSNDGAIYSTIDDDHYKSTNG 695
            RRL G+TK+QI ++I FL N+G IYSTID+DHYKSTNG
Sbjct: 243 VRRLHGFTKKQIMESIAFLINEGYIYSTIDEDHYKSTNG 281


>ref|XP_001783243.1| predicted protein [Physcomitrella patens]
           gi|162665247|gb|EDQ51938.1| predicted protein
           [Physcomitrella patens]
          Length = 285

 Score =  218 bits (554), Expect = 4e-54
 Identities = 113/221 (51%), Positives = 149/221 (67%), Gaps = 2/221 (0%)
 Frame = +3

Query: 39  FTVKTLNPKMVTLVGRVTNKEERVTDVSFQLDDGTGRMEVKRWVN--DNAEVSEMAAVQD 212
           F V  L    VTLVG V +K+ER  D SF LDD TGR+EVKRW++  D+ E  EM +VQ+
Sbjct: 68  FYVDGLEINNVTLVGMVHDKDERNIDTSFMLDDTTGRIEVKRWIDGQDSYEYFEMQSVQN 127

Query: 213 GTYVRVHGHLRSFQGKKNINAFSVKPVTDFNEITFHFLECIYIHLHNVKAQGGSVVPNIS 392
             YVRVHGHLR+FQ K N+ AFSV+P+TDFNE+TFHFLE I++HL   +  G S V   +
Sbjct: 128 FMYVRVHGHLRTFQNKLNVVAFSVRPITDFNEVTFHFLEVIHVHLSRTRKGGVSAV---A 184

Query: 393 SPAVKVAPTTPSAGLAQANQNSFASPVINRGGGAKAFYDRVRDIFEEPQHLALEQGVHID 572
           +PA+     TP  G+    +   AS  I  GG  +    RV  I+EEP  L +EQG+H+D
Sbjct: 185 TPALGNTMATPQNGMYTPVKTPIASSAIPAGGAKEECQRRVHSIYEEPASLQVEQGLHVD 244

Query: 573 EIARRLPGYTKQQISDAIVFLSNDGAIYSTIDDDHYKSTNG 695
           ++ +R+ G+T+ Q+ +AI FL N+G IYSTIDDDH+KSTNG
Sbjct: 245 QVVQRMVGFTRAQVREAIDFLVNEGYIYSTIDDDHHKSTNG 285


>ref|XP_002967805.1| hypothetical protein SELMODRAFT_440021 [Selaginella moellendorffii]
           gi|300164543|gb|EFJ31152.1| hypothetical protein
           SELMODRAFT_440021 [Selaginella moellendorffii]
          Length = 279

 Score =  217 bits (553), Expect = 6e-54
 Identities = 105/211 (49%), Positives = 144/211 (68%), Gaps = 3/211 (1%)
 Frame = +3

Query: 69  VTLVGRVTNKEERVTDVSFQLDDGTGRMEVKRWVN--DNAEVSEMAAVQDGTYVRVHGHL 242
           VT+VG +  KEER TD+SF LDDGTGR+EVKRW+   D  E  ++ ++Q G YVR+HGHL
Sbjct: 72  VTMVGMLLGKEERATDISFMLDDGTGRVEVKRWIESPDAPEALQLHSIQHGQYVRIHGHL 131

Query: 243 RSFQGKKNINAFSVKPVTDFNEITFHFLECIYIHLHNVKAQGGSVVPNISSPAVKVAPTT 422
           R+FQ K+ + AF+VKP+TDFNEITFHFL+CI+ H +N K+QG +     +SP     PT 
Sbjct: 132 RTFQNKRTVVAFAVKPITDFNEITFHFLDCIFAHTYNTKSQGAARPDGPASP-----PTF 186

Query: 423 PSAGLAQANQNSFASPVI-NRGGGAKAFYDRVRDIFEEPQHLALEQGVHIDEIARRLPGY 599
                +    N +A+P       G      RV+ +FEEP     EQG+H+DEIARR+ G+
Sbjct: 187 NHTNYSNPVSNPYATPAAPANSNGMSECQRRVQAVFEEPSVKESEQGLHVDEIARRITGF 246

Query: 600 TKQQISDAIVFLSNDGAIYSTIDDDHYKSTN 692
           +K+Q+ DA+ FL N+G +YST+DD+H+KSTN
Sbjct: 247 SKKQVRDAVEFLVNEGYVYSTVDDEHFKSTN 277


>ref|XP_002981721.1| hypothetical protein SELMODRAFT_421246 [Selaginella moellendorffii]
           gi|300150553|gb|EFJ17203.1| hypothetical protein
           SELMODRAFT_421246 [Selaginella moellendorffii]
          Length = 279

 Score =  217 bits (553), Expect = 6e-54
 Identities = 105/211 (49%), Positives = 144/211 (68%), Gaps = 3/211 (1%)
 Frame = +3

Query: 69  VTLVGRVTNKEERVTDVSFQLDDGTGRMEVKRWVN--DNAEVSEMAAVQDGTYVRVHGHL 242
           VT+VG +  KEER TD+SF LDDGTGR+EVKRW+   D  E  ++ ++Q G YVR+HGHL
Sbjct: 72  VTMVGMLLGKEERATDISFMLDDGTGRVEVKRWIESPDAPEALQLHSIQHGQYVRIHGHL 131

Query: 243 RSFQGKKNINAFSVKPVTDFNEITFHFLECIYIHLHNVKAQGGSVVPNISSPAVKVAPTT 422
           R+FQ K+ + AF+VKP+TDFNEITFHFL+CI+ H +N K+QG +     +SP     PT 
Sbjct: 132 RTFQNKRTVVAFAVKPITDFNEITFHFLDCIFAHTYNTKSQGAARPDGPASP-----PTF 186

Query: 423 PSAGLAQANQNSFASPVI-NRGGGAKAFYDRVRDIFEEPQHLALEQGVHIDEIARRLPGY 599
                +    N +A+P       G      RV+ +FEEP     EQG+H+DEIARR+ G+
Sbjct: 187 NHTNYSNPVSNPYATPAAPANSNGMSECQRRVQAVFEEPSVKESEQGLHVDEIARRITGF 246

Query: 600 TKQQISDAIVFLSNDGAIYSTIDDDHYKSTN 692
           +K+Q+ DA+ FL N+G +YST+DD+H+KSTN
Sbjct: 247 SKKQVRDAVEFLVNEGYVYSTVDDEHFKSTN 277


>ref|XP_006843762.1| hypothetical protein AMTR_s00007p00238780 [Amborella trichopoda]
           gi|548846130|gb|ERN05437.1| hypothetical protein
           AMTR_s00007p00238780 [Amborella trichopoda]
          Length = 278

 Score =  208 bits (530), Expect = 3e-51
 Identities = 112/215 (52%), Positives = 140/215 (65%), Gaps = 1/215 (0%)
 Frame = +3

Query: 45  VKTLNPKMVTLVGRVTNKEERVTDVSFQLDDGTGRMEVKRWVNDNAEVSEMAAVQDGTYV 224
           V+ L    V LVG V NK ERVTDV F LDDGTGR++V RWVND  + +EMA V++G YV
Sbjct: 63  VEALESNNVRLVGMVANKVERVTDVQFILDDGTGRIDVHRWVNDATDSNEMAIVKNGIYV 122

Query: 225 RVHGHLRSFQGKKNINAFSVKPVTDFNEITFHFLECIYIHLHNVKAQGGSVVPNISSPAV 404
           RV GHL+SFQGKK+  AFSV+P+TDFNEIT HFLECIY+HL N K  GGS  P  SS   
Sbjct: 123 RVIGHLKSFQGKKHATAFSVRPITDFNEITCHFLECIYVHLSNTKQMGGSPQPQKSSVTT 182

Query: 405 KVAPTTPSAGLAQANQNSFAS-PVINRGGGAKAFYDRVRDIFEEPQHLALEQGVHIDEIA 581
            +    P      A    F   P +   G       RV+ +F EP  L  ++G+H+DE+A
Sbjct: 183 ALG-NGPMGNSTPAKHIQFTGHPAL--VGSEDDINTRVKKVFMEPDALKNDEGLHVDEVA 239

Query: 582 RRLPGYTKQQISDAIVFLSNDGAIYSTIDDDHYKS 686
           +RLPG +KQ+I  AI FL  +G IYSTI+D +YK+
Sbjct: 240 QRLPGISKQRIMKAIDFLVGEGEIYSTINDYYYKA 274


>ref|XP_002268721.2| PREDICTED: replication protein A 32 kDa subunit [Vitis vinifera]
          Length = 275

 Score =  198 bits (504), Expect = 3e-48
 Identities = 103/218 (47%), Positives = 140/218 (64%), Gaps = 1/218 (0%)
 Frame = +3

Query: 39  FTVKTLNPKMVTLVGRVTNKEERVTDVSFQLDDGTGRMEVKRWVNDNAEVSEMAAVQDGT 218
           F +  +    VTLVG V NK ERVTDV F LDDGTGR++  RWVN+  +  EM  + DG 
Sbjct: 63  FLIDGVEVNNVTLVGMVFNKAERVTDVGFMLDDGTGRIDCNRWVNEAVDTKEMEGILDGM 122

Query: 219 YVRVHGHLRSFQGKKNINAFSVKPVTDFNEITFHFLECIYIHLHNVKAQ-GGSVVPNISS 395
           YVRVHGHL+ FQGK+++N FS++PVTDFNEI  HF+ECIY+H++N K++ GG    ++++
Sbjct: 123 YVRVHGHLKGFQGKRHLNVFSIRPVTDFNEIASHFIECIYVHIYNTKSRAGGPTQSHVTN 182

Query: 396 PAVKVAPTTPSAGLAQANQNSFASPVINRGGGAKAFYDRVRDIFEEPQHLALEQGVHIDE 575
           PA+     TP  G   +  N F+      G G K     V D  ++PQ LA +QGV  DE
Sbjct: 183 PAI----GTPLKGYQASQPNQFSG---QYGAGLKGVDQLVIDYLQQPQSLARDQGVGRDE 235

Query: 576 IARRLPGYTKQQISDAIVFLSNDGAIYSTIDDDHYKST 689
           +A++L      +I ++I  L  +G IYSTID+ HYKST
Sbjct: 236 LAQQL-NVPVDKIMESIRSLEEEGLIYSTIDEWHYKST 272


>emb|CBI17841.3| unnamed protein product [Vitis vinifera]
          Length = 277

 Score =  197 bits (502), Expect = 5e-48
 Identities = 103/220 (46%), Positives = 140/220 (63%), Gaps = 3/220 (1%)
 Frame = +3

Query: 39  FTVKTLNPKMVTLVGRVTNKEERVTDVSFQLDDGTGRMEVKRWVNDNAEVSEMAAVQDGT 218
           F +  +    VTLVG V NK ERVTDV F LDDGTGR++  RWVN+  +  EM  + DG 
Sbjct: 63  FLIDGVEVNNVTLVGMVFNKAERVTDVGFMLDDGTGRIDCNRWVNEAVDTKEMEGILDGM 122

Query: 219 YVRVHGHLRSFQGKKNINAFSVKPVTDFNEITFHFLECIYIHLHNVKAQ---GGSVVPNI 389
           YVRVHGHL+ FQGK+++N FS++PVTDFNEI  HF+ECIY+H++N K++   GG    ++
Sbjct: 123 YVRVHGHLKGFQGKRHLNVFSIRPVTDFNEIASHFIECIYVHIYNTKSRVQAGGPTQSHV 182

Query: 390 SSPAVKVAPTTPSAGLAQANQNSFASPVINRGGGAKAFYDRVRDIFEEPQHLALEQGVHI 569
           ++PA+     TP  G   +  N F+      G G K     V D  ++PQ LA +QGV  
Sbjct: 183 TNPAI----GTPLKGYQASQPNQFSG---QYGAGLKGVDQLVIDYLQQPQSLARDQGVGR 235

Query: 570 DEIARRLPGYTKQQISDAIVFLSNDGAIYSTIDDDHYKST 689
           DE+A++L      +I ++I  L  +G IYSTID+ HYKST
Sbjct: 236 DELAQQL-NVPVDKIMESIRSLEEEGLIYSTIDEWHYKST 274


>gb|EOY29191.1| Replicon protein A2, putative isoform 1 [Theobroma cacao]
          Length = 280

 Score =  190 bits (482), Expect = 1e-45
 Identities = 100/224 (44%), Positives = 150/224 (66%), Gaps = 5/224 (2%)
 Frame = +3

Query: 39  FTVKTLNPKMVTLVGRVTNKEERVTDVSFQLDDGTGRMEVKRWVNDNAEVSEMAAVQDGT 218
           F ++ ++   VT+VG V NK  R +DV F LDDGTGR+E  RWV +N +  EM A++DGT
Sbjct: 63  FVIEGVDVTNVTVVGMVFNKNVRTSDVRFHLDDGTGRVECIRWVTENLDTREMDALEDGT 122

Query: 219 YVRVHGHLRSFQGKKNINAFSVKPVTDFNEITFHFLECIYIHLHN-VKAQGGSVVPNISS 395
           YVRV+GHL+SFQGKK ++AFSV+PVT+F+E+T HF+ECI+ HLH+ +++QGG+    +S 
Sbjct: 123 YVRVNGHLQSFQGKKQLSAFSVRPVTNFDEVTCHFIECIHFHLHSKLQSQGGA----LSQ 178

Query: 396 PAVKVAPTTP----SAGLAQANQNSFASPVINRGGGAKAFYDRVRDIFEEPQHLALEQGV 563
           P +  + +TP    S G+  A  N F+  V +   G K F   V +  ++P ++  E GV
Sbjct: 179 PQMDSSLSTPVRGASTGIQPALVNDFS--VQHSADGLKGFDKMVLNYLQQPSNIDREMGV 236

Query: 564 HIDEIARRLPGYTKQQISDAIVFLSNDGAIYSTIDDDHYKSTNG 695
           H++E++++L     ++I DAI  L  +G +YS+IDD HYK+  G
Sbjct: 237 HVEELSQQLKA-PIEKIKDAIDVLEKEGLVYSSIDDYHYKAVEG 279


>ref|XP_006361577.1| PREDICTED: replication protein A 32 kDa subunit A-like [Solanum
           tuberosum]
          Length = 272

 Score =  185 bits (470), Expect = 2e-44
 Identities = 98/218 (44%), Positives = 135/218 (61%)
 Frame = +3

Query: 39  FTVKTLNPKMVTLVGRVTNKEERVTDVSFQLDDGTGRMEVKRWVNDNAEVSEMAAVQDGT 218
           F +  ++   V LVG    K ERVTDVSF +DDGTGR+E  RWVND  +  E+  + DG 
Sbjct: 60  FVIDGVDVNNVRLVGMAYKKSERVTDVSFTIDDGTGRIECTRWVNDAVDTKEVEQISDGM 119

Query: 219 YVRVHGHLRSFQGKKNINAFSVKPVTDFNEITFHFLECIYIHLHNVKAQGGSVVPNISSP 398
           YVRVHGHL+ FQGK  +  F+++P+TD+NE+  HFLECIY+H  N K+Q G  V   S  
Sbjct: 120 YVRVHGHLKGFQGKTQLVVFAIRPITDYNEVATHFLECIYVHHCNRKSQSGLSVSTPSKS 179

Query: 399 AVKVAPTTPSAGLAQANQNSFASPVINRGGGAKAFYDRVRDIFEEPQHLALEQGVHIDEI 578
            V  A + PS+G    N N F++ +     G K     V D  E+P  LA E+G+H +EI
Sbjct: 180 DVPAAVSAPSSGY---NSNQFSANL--SIDGLKGIEKIVIDYLEQPSSLAQEKGIHRNEI 234

Query: 579 ARRLPGYTKQQISDAIVFLSNDGAIYSTIDDDHYKSTN 692
           A+ L     ++I +AI  L ++G +YSTID+ H+KST+
Sbjct: 235 AQHL-RVPLEKIKEAIESLESEGLVYSTIDECHFKSTS 271


>ref|XP_006408362.1| hypothetical protein EUTSA_v10021296mg [Eutrema salsugineum]
           gi|567203845|ref|XP_006408363.1| hypothetical protein
           EUTSA_v10021296mg [Eutrema salsugineum]
           gi|557109508|gb|ESQ49815.1| hypothetical protein
           EUTSA_v10021296mg [Eutrema salsugineum]
           gi|557109509|gb|ESQ49816.1| hypothetical protein
           EUTSA_v10021296mg [Eutrema salsugineum]
          Length = 278

 Score =  182 bits (461), Expect = 3e-43
 Identities = 93/227 (40%), Positives = 136/227 (59%), Gaps = 7/227 (3%)
 Frame = +3

Query: 30  QCGFTVKTLNPKMVTLVGRVTNKEERVTDVSFQLDDGTGRMEVKRWVNDNAEVSEMAAVQ 209
           +  F++  ++   V +VGRV+  E R+T V F +DDGTG +E  RW ++  E  E+ A++
Sbjct: 57  ESNFSIDGVDINTVAIVGRVSRMENRITQVDFVVDDGTGCVECVRWCHERQETEEIEAIK 116

Query: 210 DGTYVRVHGHLRSFQGKKNINAFSVKPVTDFNEITFHFLECIYIHLHNVKAQGGSVVPNI 389
            G YVR+HGHL+SFQGK+++N FS++PVTDFNEI  HF ECIY+H++N K++GGS+    
Sbjct: 117 LGMYVRLHGHLKSFQGKRSVNVFSIRPVTDFNEIVHHFAECIYVHMYNTKSRGGSISQAT 176

Query: 390 SSPAVKV------APTTP-SAGLAQANQNSFASPVINRGGGAKAFYDRVRDIFEEPQHLA 548
            +P  ++       P  P   G +    N F  P+         F   + +   +P HL 
Sbjct: 177 VTPRPQMPYSTMPTPAKPYQTGPSNQFPNQFNDPL-------HGFKQMILNYLNQPMHLT 229

Query: 549 LEQGVHIDEIARRLPGYTKQQISDAIVFLSNDGAIYSTIDDDHYKST 689
            E GVH D IAR L G    ++ DA+  LSNDG +YST+D+  +KST
Sbjct: 230 SEAGVHCDVIARNL-GIPPLKVKDALEQLSNDGCVYSTMDETCFKST 275


>gb|EOY29192.1| Replicon protein A2, putative isoform 2 [Theobroma cacao]
          Length = 203

 Score =  181 bits (458), Expect = 6e-43
 Identities = 95/208 (45%), Positives = 140/208 (67%), Gaps = 5/208 (2%)
 Frame = +3

Query: 87  VTNKEERVTDVSFQLDDGTGRMEVKRWVNDNAEVSEMAAVQDGTYVRVHGHLRSFQGKKN 266
           V NK  R +DV F LDDGTGR+E  RWV +N +  EM A++DGTYVRV+GHL+SFQGKK 
Sbjct: 2   VFNKNVRTSDVRFHLDDGTGRVECIRWVTENLDTREMDALEDGTYVRVNGHLQSFQGKKQ 61

Query: 267 INAFSVKPVTDFNEITFHFLECIYIHLHN-VKAQGGSVVPNISSPAVKVAPTTP----SA 431
           ++AFSV+PVT+F+E+T HF+ECI+ HLH+ +++QGG+    +S P +  + +TP    S 
Sbjct: 62  LSAFSVRPVTNFDEVTCHFIECIHFHLHSKLQSQGGA----LSQPQMDSSLSTPVRGAST 117

Query: 432 GLAQANQNSFASPVINRGGGAKAFYDRVRDIFEEPQHLALEQGVHIDEIARRLPGYTKQQ 611
           G+  A  N F+  V +   G K F   V +  ++P ++  E GVH++E++++L     ++
Sbjct: 118 GIQPALVNDFS--VQHSADGLKGFDKMVLNYLQQPSNIDREMGVHVEELSQQLKA-PIEK 174

Query: 612 ISDAIVFLSNDGAIYSTIDDDHYKSTNG 695
           I DAI  L  +G +YS+IDD HYK+  G
Sbjct: 175 IKDAIDVLEKEGLVYSSIDDYHYKAVEG 202


>ref|NP_566188.1| replication protein RPA32B [Arabidopsis thaliana]
           gi|75330048|sp|Q8LFJ8.1|RFA2B_ARATH RecName:
           Full=Replication protein A 32 kDa subunit B;
           Short=AtRPA32B; Short=RP-A p32 B; AltName: Full=DNA
           replication protein A2 subunit B; AltName:
           Full=Replication factor A protein 2 B; Short=AtRPA2 B;
           Short=RF-A protein 2 B; AltName: Full=Replicon protein
           A2 B gi|21537031|gb|AAM61372.1| putative replication
           factor A [Arabidopsis thaliana]
           gi|26450657|dbj|BAC42439.1| putative replication factor
           A [Arabidopsis thaliana] gi|90186248|gb|ABD91500.1|
           At3g02920 [Arabidopsis thaliana]
           gi|332640358|gb|AEE73879.1| replication protein RPA32B
           [Arabidopsis thaliana]
          Length = 278

 Score =  179 bits (453), Expect = 2e-42
 Identities = 92/223 (41%), Positives = 135/223 (60%), Gaps = 3/223 (1%)
 Frame = +3

Query: 30  QCGFTVKTLNPKMVTLVGRVTNKEERVTDVSFQLDDGTGRMEVKRWVNDNAEVSEMAAVQ 209
           +  F++  ++ K V +VGR++  E R+T V F +DDGTG ++  RW +   E  EM AV+
Sbjct: 57  ESNFSIDGVDIKTVVIVGRISRMENRITQVDFVVDDGTGWVDCVRWCHARQETEEMEAVK 116

Query: 210 DGTYVRVHGHLRSFQGKKNINAFSVKPVTDFNEITFHFLECIYIHLHNVKAQGGSVVPNI 389
            G YVR+HGHL+ FQGK+++N FSV+PVTDFNEI  HF EC+Y+H++N K +GGS+  + 
Sbjct: 117 LGMYVRLHGHLKIFQGKRSVNVFSVRPVTDFNEIVHHFTECMYVHMYNTKLRGGSITQDT 176

Query: 390 SSPAVKV---APTTPSAGLAQANQNSFASPVINRGGGAKAFYDRVRDIFEEPQHLALEQG 560
           ++P  ++      TP+        N F +   +   G K     V +   +P H+  E G
Sbjct: 177 ATPRPQMPYSTMPTPAKPYQTGPSNQFPNQFNDSMHGVK---QTVLNYLNQPMHIVSEAG 233

Query: 561 VHIDEIARRLPGYTKQQISDAIVFLSNDGAIYSTIDDDHYKST 689
           VH D IAR L      Q+ +A+  LSNDG IYST+D+  +KST
Sbjct: 234 VHCDIIAREL-RIPLLQVKEALEQLSNDGCIYSTLDETCFKST 275


>ref|NP_001189796.1| replication protein RPA32B [Arabidopsis thaliana]
           gi|332640359|gb|AEE73880.1| replication protein RPA32B
           [Arabidopsis thaliana]
          Length = 298

 Score =  179 bits (453), Expect = 2e-42
 Identities = 92/223 (41%), Positives = 135/223 (60%), Gaps = 3/223 (1%)
 Frame = +3

Query: 30  QCGFTVKTLNPKMVTLVGRVTNKEERVTDVSFQLDDGTGRMEVKRWVNDNAEVSEMAAVQ 209
           +  F++  ++ K V +VGR++  E R+T V F +DDGTG ++  RW +   E  EM AV+
Sbjct: 77  ESNFSIDGVDIKTVVIVGRISRMENRITQVDFVVDDGTGWVDCVRWCHARQETEEMEAVK 136

Query: 210 DGTYVRVHGHLRSFQGKKNINAFSVKPVTDFNEITFHFLECIYIHLHNVKAQGGSVVPNI 389
            G YVR+HGHL+ FQGK+++N FSV+PVTDFNEI  HF EC+Y+H++N K +GGS+  + 
Sbjct: 137 LGMYVRLHGHLKIFQGKRSVNVFSVRPVTDFNEIVHHFTECMYVHMYNTKLRGGSITQDT 196

Query: 390 SSPAVKV---APTTPSAGLAQANQNSFASPVINRGGGAKAFYDRVRDIFEEPQHLALEQG 560
           ++P  ++      TP+        N F +   +   G K     V +   +P H+  E G
Sbjct: 197 ATPRPQMPYSTMPTPAKPYQTGPSNQFPNQFNDSMHGVK---QTVLNYLNQPMHIVSEAG 253

Query: 561 VHIDEIARRLPGYTKQQISDAIVFLSNDGAIYSTIDDDHYKST 689
           VH D IAR L      Q+ +A+  LSNDG IYST+D+  +KST
Sbjct: 254 VHCDIIAREL-RIPLLQVKEALEQLSNDGCIYSTLDETCFKST 295


>ref|XP_002884345.1| hypothetical protein ARALYDRAFT_477538 [Arabidopsis lyrata subsp.
           lyrata] gi|297330185|gb|EFH60604.1| hypothetical protein
           ARALYDRAFT_477538 [Arabidopsis lyrata subsp. lyrata]
          Length = 278

 Score =  178 bits (451), Expect = 4e-42
 Identities = 93/225 (41%), Positives = 135/225 (60%), Gaps = 5/225 (2%)
 Frame = +3

Query: 30  QCGFTVKTLNPKMVTLVGRVTNKEERVTDVSFQLDDGTGRMEVKRWVNDNAEVSEMAAVQ 209
           +  F++  ++   V +VGR++  E R+T V F +DDGTG ++  RW  +  E  EM AV+
Sbjct: 57  ESNFSIDGVDINTVAIVGRISRMENRITQVEFVVDDGTGWVDCVRWCQERQETEEMEAVK 116

Query: 210 DGTYVRVHGHLRSFQGKKNINAFSVKPVTDFNEITFHFLECIYIHLHNVKAQGGSVVPNI 389
            G YVR+HGHL+ FQGK+++N FS++PVTDFNEI  HF EC+Y+H++N K +GGS+    
Sbjct: 117 LGMYVRLHGHLKIFQGKRSVNVFSIRPVTDFNEIVHHFTECMYVHMYNTKLRGGSITQAT 176

Query: 390 SSPAVKV---APTTPSAGLAQANQNSFASPVINRGGGAKAFYDRVRDIFEEPQHLALEQG 560
           ++P  ++      TP+        N F +   +   G K     V +   +P HL  E G
Sbjct: 177 TTPRPQMPYSTMPTPAKPYQTGPSNQFPNQFNDPMHGVK---QTVLNYLNQPMHLVSEAG 233

Query: 561 VHIDEIAR--RLPGYTKQQISDAIVFLSNDGAIYSTIDDDHYKST 689
           VH D IAR  R+P     Q+ DA+  LSNDG IYST+D+  +KST
Sbjct: 234 VHCDIIARDLRIP---LPQVKDALEQLSNDGCIYSTMDETCFKST 275


>ref|XP_006298263.1| hypothetical protein CARUB_v10014327mg [Capsella rubella]
           gi|482566972|gb|EOA31161.1| hypothetical protein
           CARUB_v10014327mg [Capsella rubella]
          Length = 284

 Score =  177 bits (450), Expect = 5e-42
 Identities = 97/231 (41%), Positives = 138/231 (59%), Gaps = 11/231 (4%)
 Frame = +3

Query: 30  QCGFTVKTLNPKMVTLVGRVTNKEERVTDVSFQLDDGTGRMEVKRWVNDNAEVSEMAAVQ 209
           +  F+V  ++   V +VGR++  E R+T V F +DDGTG ++  RW  +  E  EM AV+
Sbjct: 57  ESNFSVDGVDINTVAIVGRISRMENRITQVDFVVDDGTGWVDCVRWCQERQETEEMEAVK 116

Query: 210 DGTYVRVHGHLRSFQGKKNINAFSVKPVTDFNEITFHFLECIYIHLHNVKAQGGSVVPNI 389
            G YVR+HGHL+SFQGK+++N FS++PVTDFNEI  HF EC+Y+H++N K +GGS+    
Sbjct: 117 LGMYVRLHGHLKSFQGKRSVNVFSIRPVTDFNEIVHHFTECMYVHMYNTKLRGGSITHGG 176

Query: 390 SS--------PAVKVAPTTPSAGLAQAN-QNSFASPVINRGGGAKAFYDRVRDIFEEPQH 542
           S+        P +  +    SA   Q    N F++ + +   G K     V +   +P H
Sbjct: 177 SNTQATATARPQMPYSTMPTSAKPYQTGPSNQFSNQINDPMHGVK---QTVLNYLNQPMH 233

Query: 543 LALEQGVHIDEIAR--RLPGYTKQQISDAIVFLSNDGAIYSTIDDDHYKST 689
           L  E GVH D IAR  R+P     Q+ +AI  LSNDG +YST+DD  +KST
Sbjct: 234 LVSEAGVHCDIIARDLRIP---PLQVREAIEQLSNDGCVYSTVDDTCFKST 281


>ref|XP_004242927.1| PREDICTED: replication protein A 32 kDa subunit A-like [Solanum
           lycopersicum]
          Length = 272

 Score =  177 bits (448), Expect = 9e-42
 Identities = 96/218 (44%), Positives = 131/218 (60%)
 Frame = +3

Query: 39  FTVKTLNPKMVTLVGRVTNKEERVTDVSFQLDDGTGRMEVKRWVNDNAEVSEMAAVQDGT 218
           F +  ++   V LVG      ERVTDVSF +DDGTGR+E  RWVND  +  E+  V D  
Sbjct: 60  FVIDGVDVNNVRLVGMAYKNSERVTDVSFTIDDGTGRIECTRWVNDAVDTKEVEQVSDRM 119

Query: 219 YVRVHGHLRSFQGKKNINAFSVKPVTDFNEITFHFLECIYIHLHNVKAQGGSVVPNISSP 398
           YVRVHGHL+ FQGK  +  FS++P+T++NE+  HFLECIY+H  N K Q G  V   S  
Sbjct: 120 YVRVHGHLKGFQGKTQLVIFSIRPITEYNEVATHFLECIYVHHCNRKPQSGLSVSTPSKT 179

Query: 399 AVKVAPTTPSAGLAQANQNSFASPVINRGGGAKAFYDRVRDIFEEPQHLALEQGVHIDEI 578
            V  A + PS+G    N + F+  +     G K     V D  E+P  LA E+G+H +EI
Sbjct: 180 DVPAAVSAPSSGY---NSSQFSGNL--SIDGLKGIEKIVIDYLEQPSSLAQEKGIHWNEI 234

Query: 579 ARRLPGYTKQQISDAIVFLSNDGAIYSTIDDDHYKSTN 692
           A+ L     ++I +AI  L ++G +YSTID+ H+KST+
Sbjct: 235 AQHL-RVPLEKIKEAIESLESEGLVYSTIDECHFKSTS 271


>ref|XP_002880588.1| ATRPA2/ROR1/RPA2 [Arabidopsis lyrata subsp. lyrata]
           gi|297326427|gb|EFH56847.1| ATRPA2/ROR1/RPA2
           [Arabidopsis lyrata subsp. lyrata]
          Length = 279

 Score =  177 bits (448), Expect = 9e-42
 Identities = 95/225 (42%), Positives = 140/225 (62%), Gaps = 5/225 (2%)
 Frame = +3

Query: 24  G*QCGFTVKTLNPKMVTLVGRVTNKE-ERVTDVSFQLDDGTGRMEVKRWVNDNAEVSEMA 200
           G + G  +  ++   V+LVG V +K+  +VT+V F LDDGTGR++ KRWVN+  +  EM 
Sbjct: 58  GEKSGLVINGISLTNVSLVGLVCDKDVSKVTEVRFTLDDGTGRIDCKRWVNETFDAREME 117

Query: 201 AVQDGTYVRVHGHLRSFQGKKNINAFSVKPVTDFNEITFHFLECIYIHLHNVKAQGGSVV 380
           +V+DGTYVRV+GHL++FQGK  +  FSV+P+ DFNE+TFH++ECI+ +  N ++QG  V 
Sbjct: 118 SVRDGTYVRVNGHLKTFQGKTQLLVFSVRPIMDFNEVTFHYIECIHFYSQNSESQGQQV- 176

Query: 381 PNISSPAVKVAPTTPSAGLAQANQNSFASPVI----NRGGGAKAFYDRVRDIFEEPQHLA 548
                  V  +  T   G +  NQ +  +PV+    N G G K   D + D  ++P   A
Sbjct: 177 -----GDVTQSVNTTFQGGSNTNQATPLNPVVSSQNNDGNGRKNLDDMILDYLKQPACTA 231

Query: 549 LEQGVHIDEIARRLPGYTKQQISDAIVFLSNDGAIYSTIDDDHYK 683
            +QG+HIDEIA++L    K ++   +  L  DG IYSTID+ H+K
Sbjct: 232 RQQGIHIDEIAQQLK-VPKNKLEGVVQSLEGDGLIYSTIDEYHFK 275


>gb|AAF26967.1|AC018363_12 putative replication factor A [Arabidopsis thaliana]
          Length = 282

 Score =  177 bits (448), Expect = 9e-42
 Identities = 93/225 (41%), Positives = 135/225 (60%), Gaps = 5/225 (2%)
 Frame = +3

Query: 30  QCGFTVKTLNPKMVTLVGRVTNKEERVTDVSFQLDDGTGRMEVKRWVNDNAEVSEMAAVQ 209
           +  F++  ++ K V +VGR++  E R+T V F +DDGTG ++  RW +   E  EM AV+
Sbjct: 57  ESNFSIDGVDIKTVVIVGRISRMENRITQVDFVVDDGTGWVDCVRWCHARQETEEMEAVK 116

Query: 210 DGTYVRVHGHLRSFQGKKNINAFSVKPVTDFNEITFHFLECIYIHLHNVKAQGGSVVPNI 389
            G YVR+HGHL+ FQGK+++N FSV+PVTDFNEI  HF EC+Y+H++N K +GGS+  + 
Sbjct: 117 LGMYVRLHGHLKIFQGKRSVNVFSVRPVTDFNEIVHHFTECMYVHMYNTKLRGGSITQDT 176

Query: 390 SSPAVKVA-PTTPSAG----LAQANQNSFASPVINRGGGAKAFYDRVRDIFEEPQHLALE 554
           ++P  ++   T P+         +NQN F  P              V +   +P H+  E
Sbjct: 177 ATPRPQMPYSTMPTPAKPYQTGPSNQNLFQFP-NQFNDSMHGVKQTVLNYLNQPMHIVSE 235

Query: 555 QGVHIDEIARRLPGYTKQQISDAIVFLSNDGAIYSTIDDDHYKST 689
            GVH D IAR L      Q+ +A+  LSNDG IYST+D+  +KST
Sbjct: 236 AGVHCDIIAREL-RIPLLQVKEALEQLSNDGCIYSTLDETCFKST 279


>ref|XP_006294695.1| hypothetical protein CARUB_v10023731mg, partial [Capsella rubella]
           gi|482563403|gb|EOA27593.1| hypothetical protein
           CARUB_v10023731mg, partial [Capsella rubella]
          Length = 300

 Score =  174 bits (442), Expect = 4e-41
 Identities = 94/227 (41%), Positives = 141/227 (62%), Gaps = 7/227 (3%)
 Frame = +3

Query: 24  G*QCGFTVKTLNPKMVTLVGRVTNKE-ERVTDVSFQLDDGTGRMEVKRWVNDNAEVSEMA 200
           G + G  +  ++   V+LVG V +K+  +VT+V F LDDGTGR++ KRWVN+  +  EM 
Sbjct: 80  GEKSGLVINGISLTNVSLVGLVCDKDVSKVTEVRFTLDDGTGRIDCKRWVNETFDAREME 139

Query: 201 AVQDGTYVRVHGHLRSFQGKKNINAFSVKPVTDFNEITFHFLECIYIHLHNVKAQG---G 371
           +V DGTYVR++GHL++FQGK  +  FSV+P+ DFN++TFH++ECI+ +  N +++G   G
Sbjct: 140 SVSDGTYVRLNGHLKTFQGKTQLLVFSVRPIMDFNQVTFHYIECIHFYSQNSESKGQQVG 199

Query: 372 SVVPNISSPAVKVAPTTPSAGLAQANQNSFASPVI---NRGGGAKAFYDRVRDIFEEPQH 542
            V  ++S         T   G +  NQ +  +PV+   N G G K   D + D  ++P  
Sbjct: 200 DVTQSVS---------TTFQGGSNTNQAAPLNPVVSSQNDGNGRKNIDDMILDYLKQPAC 250

Query: 543 LALEQGVHIDEIARRLPGYTKQQISDAIVFLSNDGAIYSTIDDDHYK 683
            A +QG+HIDEIA++L    K ++   I  L  DG IYSTID+ H+K
Sbjct: 251 TARQQGIHIDEIAQQLK-IPKNKLESVIQSLEGDGLIYSTIDEYHFK 296


>ref|XP_006404980.1| hypothetical protein EUTSA_v10000282mg [Eutrema salsugineum]
           gi|557106108|gb|ESQ46433.1| hypothetical protein
           EUTSA_v10000282mg [Eutrema salsugineum]
          Length = 278

 Score =  174 bits (441), Expect = 6e-41
 Identities = 95/226 (42%), Positives = 142/226 (62%), Gaps = 6/226 (2%)
 Frame = +3

Query: 24  G*QCGFTVKTLNPKMVTLVGRVTNKE-ERVTDVSFQLDDGTGRMEVKRWVNDNAEVSEMA 200
           G + G  +  +    V+LVG V +K+  +VT+V F LDDGTGR++ KRWVN++ +  EM 
Sbjct: 58  GEKSGIVINGIELTNVSLVGLVCDKDVSKVTEVRFTLDDGTGRIDCKRWVNESFDAREME 117

Query: 201 AVQDGTYVRVHGHLRSFQGKKNINAFSVKPVTDFNEITFHFLECIYIHLHNVKAQGGSVV 380
           +V DG YVR++GHL++FQGKK +  FSV+P+TDFNE+TFH++ECI+ +  N ++Q G  V
Sbjct: 118 SVLDGAYVRLNGHLKTFQGKKQLLVFSVRPITDFNEVTFHYIECIHFYSKNSESQLGQQV 177

Query: 381 PNIS-SPAVKVAPTTPSAGLAQANQNSFASPVI----NRGGGAKAFYDRVRDIFEEPQHL 545
            +++ S  V  + TT        NQ +  +PV+    N G G K   D + D  ++P   
Sbjct: 178 GDVTQSHMVNSSVTT--------NQTTTLNPVMSSQNNDGNGRKNLDDMILDYLKQPACT 229

Query: 546 ALEQGVHIDEIARRLPGYTKQQISDAIVFLSNDGAIYSTIDDDHYK 683
             +QG+H+DEIA++L    K ++   I  L  DG IYSTID+ H+K
Sbjct: 230 ERQQGIHLDEIAQQLK-IPKNKLEGVIQSLEGDGLIYSTIDEYHFK 274