BLASTX nr result
ID: Ephedra25_contig00013706
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra25_contig00013706
(1138 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006828851.1| hypothetical protein AMTR_s00001p00157430 [A... 374 e-101
ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chl... 365 2e-98
ref|XP_004238386.1| PREDICTED: RNA pseudourine synthase 2, chlor... 365 2e-98
ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chlor... 361 3e-97
ref|XP_002519370.1| ribosomal pseudouridine synthase, putative [... 356 1e-95
ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chlor... 353 5e-95
ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chl... 353 9e-95
ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour... 352 1e-94
gb|EEC81320.1| hypothetical protein OsI_24484 [Oryza sativa Indi... 352 1e-94
ref|NP_001058594.1| Os06g0717400 [Oryza sativa Japonica Group] g... 352 2e-94
ref|XP_002439034.1| hypothetical protein SORBIDRAFT_10g030300 [S... 351 4e-94
ref|XP_006390244.1| hypothetical protein EUTSA_v10018588mg [Eutr... 349 1e-93
ref|XP_004966473.1| PREDICTED: RNA pseudouridine synthase 2, chl... 348 3e-93
gb|EOY15125.1| Pseudouridine synthase family protein isoform 1 [... 347 7e-93
ref|XP_002301949.1| pseudouridine synthase family protein [Popul... 347 7e-93
ref|XP_003563280.1| PREDICTED: RNA pseudourine synthase 2, chlor... 346 9e-93
ref|XP_006656497.1| PREDICTED: RNA pseudouridine synthase 2, chl... 345 1e-92
gb|ACG41877.1| RNA binding protein [Zea mays] 343 6e-92
ref|NP_001140404.1| RNA binding protein [Zea mays] gi|194699356|... 343 6e-92
ref|XP_006302277.1| hypothetical protein CARUB_v10020321mg [Caps... 339 1e-90
>ref|XP_006828851.1| hypothetical protein AMTR_s00001p00157430 [Amborella trichopoda]
gi|548833830|gb|ERM96267.1| hypothetical protein
AMTR_s00001p00157430 [Amborella trichopoda]
Length = 452
Score = 374 bits (961), Expect = e-101
Identities = 183/326 (56%), Positives = 235/326 (72%), Gaps = 3/326 (0%)
Frame = -2
Query: 969 FNDKVGEGTPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIIS 790
F V G+ K+R+D+WLS+R+ +SRARIQSS+RQG V VNG I K SHI++ GD++
Sbjct: 72 FESSVAVGSKKERIDSWLSARIGDVSRARIQSSIRQGFVKVNGLPITKVSHIVKVGDMVD 131
Query: 789 CNIAPLVPLRAEPEEMQLXXXXXXXXXXXVNKPAHMVVHPAPGNPNGTLVNGILHHCGLP 610
C ++ L PL+AEPE+M L VNKPAHMVVHPAPGN NGTLVNGILHHC LP
Sbjct: 132 CTVSHLQPLKAEPEDMPLDIIYEDDHVLVVNKPAHMVVHPAPGNANGTLVNGILHHCTLP 191
Query: 609 SIGCXXXXXXXXXXXXXXDEVNM---PLLDCSLESAVRPGIVHRIDKGTSGLLVIAKNEN 439
+ G + + M + S++RPGIVHR+DKGTSGLLV+AKNE+
Sbjct: 192 AFGLPDGELTSESDDECDNGLTMFNPDPISTQCRSSIRPGIVHRLDKGTSGLLVVAKNEH 251
Query: 438 AHACLAEQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQAR 259
+HA L+EQF+ HT+ R+Y+SLTCGVP+ +G IE+ IARD NNR+RM AV N +AR
Sbjct: 252 SHAHLSEQFKLHTIHRQYISLTCGVPSPSNGCIEIPIARDMNNRIRMAAVSGQNNTRKAR 311
Query: 258 FAASRYAVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRL 79
A SRY V + L GG +VEWRL+TGRTHQIRVHA++IG PLLGDE+YGGTK +ALSRL
Sbjct: 312 LATSRYHVMEVLAGGGSALVEWRLQTGRTHQIRVHAKYIGNPLLGDEVYGGTKSMALSRL 371
Query: 78 KCKLPSKYHGEISKVISSIERPCLHA 1
+ + PS YHG +S+++S+++RPCLHA
Sbjct: 372 RPRTPSHYHGPLSQLVSNLQRPCLHA 397
>ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Solanum
tuberosum]
Length = 431
Score = 365 bits (937), Expect = 2e-98
Identities = 183/324 (56%), Positives = 234/324 (72%), Gaps = 9/324 (2%)
Frame = -2
Query: 945 TPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPLVP 766
T K RLD+W+SSR++G+SRAR+QSS+R GLV VNG +K SH+++ GD + C IA L P
Sbjct: 68 TGKLRLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDKVDCTIADLKP 127
Query: 765 LRAEPEEMQLXXXXXXXXXXXVNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSIGCXXXX 586
LRAEPE++ L VNKPAHMVVHPAPGN GTLV+GILHHC LP+I
Sbjct: 128 LRAEPEDIPLDIVFEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTISFLGEE 187
Query: 585 XXXXXXXXXXDEVNM------PLLDCS---LESAVRPGIVHRIDKGTSGLLVIAKNENAH 433
DE+N+ P D S ES+VRPGIVHR+DKGTSGLLV+AKNEN+
Sbjct: 188 VLSDAEDASDDELNVFSGNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAKNENSL 247
Query: 432 ACLAEQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQARFA 253
A LAEQF+KHT+ R YVS+TCGVPA GR+++ I RD NNR+RM A+P + ++R A
Sbjct: 248 ASLAEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKSGKSRHA 307
Query: 252 ASRYAVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRLKC 73
SRY V ++L +GG +VEWRLETGRTHQIR HA+++G PL+GDE+YGGTK +ALS L+
Sbjct: 308 VSRYKVIEKLARGGSALVEWRLETGRTHQIRAHAKYLGIPLMGDEVYGGTKNMALSLLQP 367
Query: 72 KLPSKYHGEISKVISSIERPCLHA 1
K P +HG++S+++S I+RPCLHA
Sbjct: 368 KTPPMFHGKLSQLVSQIDRPCLHA 391
>ref|XP_004238386.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Solanum
lycopersicum]
Length = 436
Score = 365 bits (937), Expect = 2e-98
Identities = 184/330 (55%), Positives = 235/330 (71%), Gaps = 9/330 (2%)
Frame = -2
Query: 963 DKVGEGTPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCN 784
+ V T K RLD+W+SSR++G+SRAR+QSS+R GLV VNG +K SH+++ GD + C
Sbjct: 62 ETVDSKTGKLRLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDKVDCT 121
Query: 783 IAPLVPLRAEPEEMQLXXXXXXXXXXXVNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSI 604
IA L PLRAEPE++ L VNKPAHMVVHPAPGN GTLV+GILHHC LP++
Sbjct: 122 IADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTV 181
Query: 603 GCXXXXXXXXXXXXXXDEVNM------PLLDCS---LESAVRPGIVHRIDKGTSGLLVIA 451
DE+N+ P D S ES+VRPGIVHR+DKGTSGLLV+A
Sbjct: 182 SFPGEEVLSDGEDASDDELNIFSPNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVA 241
Query: 450 KNENAHACLAEQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTR 271
KNE++ A LAEQF+KHT+ R YVS+TCGVPA GR+++ I RD NNR+RM A+P +
Sbjct: 242 KNEHSLADLAEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKS 301
Query: 270 YQARFAASRYAVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLA 91
++R A SRY V ++L GG +VEWRLETGRTHQIR HA+H+G PL+GDE+YGGTK +A
Sbjct: 302 GKSRHAVSRYKVIEKLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLMGDEVYGGTKNMA 361
Query: 90 LSRLKCKLPSKYHGEISKVISSIERPCLHA 1
LS L+ K P +HGE+S+++S I+RPCLHA
Sbjct: 362 LSLLQPKTPPMFHGELSQLVSQIDRPCLHA 391
>ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Vitis
vinifera] gi|302141717|emb|CBI18920.3| unnamed protein
product [Vitis vinifera]
Length = 433
Score = 361 bits (927), Expect = 3e-97
Identities = 176/320 (55%), Positives = 231/320 (72%), Gaps = 1/320 (0%)
Frame = -2
Query: 957 VGEGTPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIA 778
V + K RLD+W+SSR+ GISRAR+QSS+R GLV VN ++K SH+IRAGD ++C I+
Sbjct: 70 VNSDSGKLRLDSWISSRIIGISRARVQSSIRSGLVSVNDRIVDKVSHVIRAGDKVNCTIS 129
Query: 777 PLVPLRAEPEEMQLXXXXXXXXXXXVNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSIGC 598
L PLRAEPE++ L VNKPAHMVVHPAPGN +GTLVNGILHHC LP++
Sbjct: 130 ELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILHHCSLPTVAL 189
Query: 597 XXXXXXXXXXXXXXDEVNMPLLDC-SLESAVRPGIVHRIDKGTSGLLVIAKNENAHACLA 421
+C + E+ +RPGIVHR+DKGTSGLLV+AK+E++HA L+
Sbjct: 190 PNRDSEEDDISDDEFNSFAAGQNCGTCETNIRPGIVHRLDKGTSGLLVVAKDEHSHAHLS 249
Query: 420 EQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQARFAASRY 241
EQF+ H++ R Y+SLT GVP GR+E+ + RDPNNR+RM AVP + QAR AASRY
Sbjct: 250 EQFKLHSIHRVYISLTSGVPTPLSGRVEIPVGRDPNNRIRMTAVPGPSNSGQARHAASRY 309
Query: 240 AVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRLKCKLPS 61
V + L GG +VEWRLETGRTHQIR HA+++G PLLGDE+YGGTK +ALS L+ ++PS
Sbjct: 310 KVIEILAAGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSLLRPRIPS 369
Query: 60 KYHGEISKVISSIERPCLHA 1
+HG++++++S ++RPCLHA
Sbjct: 370 SHHGQLAQLVSRLDRPCLHA 389
>ref|XP_002519370.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
gi|223541437|gb|EEF42987.1| ribosomal pseudouridine
synthase, putative [Ricinus communis]
Length = 399
Score = 356 bits (913), Expect = 1e-95
Identities = 176/313 (56%), Positives = 226/313 (72%)
Frame = -2
Query: 939 KQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPLVPLR 760
K RLD+W+SSR+ GISRAR+QSS++ GLV VNG ++K SH ++ GD ++C I+ L PLR
Sbjct: 71 KLRLDSWISSRISGISRARVQSSIKSGLVSVNGRVVDKVSHNVKFGDKVTCTISELQPLR 130
Query: 759 AEPEEMQLXXXXXXXXXXXVNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSIGCXXXXXX 580
AEPE+M L VNKP HMVVHPAPGNP GTLVNGILHHC LP++
Sbjct: 131 AEPEDMPLDIVYEDEHLLVVNKPPHMVVHPAPGNPTGTLVNGILHHCNLPTVAISSQEVL 190
Query: 579 XXXXXXXXDEVNMPLLDCSLESAVRPGIVHRIDKGTSGLLVIAKNENAHACLAEQFEKHT 400
D+ C ES++RPGIVHR+DKGTSGLLV+AK+E+AHA L+EQF++HT
Sbjct: 191 SDAEDRSDDDERSYSSSC--ESSIRPGIVHRLDKGTSGLLVVAKDEHAHAHLSEQFKQHT 248
Query: 399 VFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQARFAASRYAVTKELC 220
+ R Y+SLT GVP+ GRI++ I RD NNR+RM A+P + +AR AASR+ V + L
Sbjct: 249 IQRVYISLTSGVPSALTGRIDIPIGRDVNNRIRMTAIPGPIKQGRARHAASRFKVVETLA 308
Query: 219 KGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRLKCKLPSKYHGEIS 40
GG +VEWRLETGRTHQIR HA++IG PLLGDE+YGGT+ +ALS L+ ++PS H E+S
Sbjct: 309 GGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDEVYGGTRSMALSLLRPRIPSTCHSELS 368
Query: 39 KVISSIERPCLHA 1
++S +ERPCLHA
Sbjct: 369 LLLSKLERPCLHA 381
>ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cucumis
sativus]
Length = 453
Score = 353 bits (907), Expect = 5e-95
Identities = 171/313 (54%), Positives = 225/313 (71%)
Frame = -2
Query: 939 KQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPLVPLR 760
K RLD+W+S R+ GISRAR+QSS+R GLV VNG I+K SH ++AGD+I+C I+ L PLR
Sbjct: 76 KVRLDSWISCRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAGDVINCTISELQPLR 135
Query: 759 AEPEEMQLXXXXXXXXXXXVNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSIGCXXXXXX 580
AEPE++ L VNKPAHMVVHPAPGN GTLVN IL+HC LP +
Sbjct: 136 AEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVATSTGENE 195
Query: 579 XXXXXXXXDEVNMPLLDCSLESAVRPGIVHRIDKGTSGLLVIAKNENAHACLAEQFEKHT 400
+ ++ + E+ +RPGIVHR+DKGTSGLLV+AK+E++HA L+ QF++H+
Sbjct: 196 SDSDVSDDEFSSIGVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQHS 255
Query: 399 VFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQARFAASRYAVTKELC 220
+ R Y+SLTCGVP GRIEM I RDPNNR+RM A+ + A++AASRY V + L
Sbjct: 256 IERVYISLTCGVPPSTAGRIEMPICRDPNNRIRMTAIDGTKNNPHAKYAASRYNVMEILA 315
Query: 219 KGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRLKCKLPSKYHGEIS 40
+GG +VEWRLETGRTHQIR HA+++G PLLGDE+YGGTK +A+S L+ + S HG++
Sbjct: 316 QGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSLLRTRASSNCHGQLM 375
Query: 39 KVISSIERPCLHA 1
+++SS+ERPCLHA
Sbjct: 376 QLVSSLERPCLHA 388
>ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Citrus
sinensis]
Length = 421
Score = 353 bits (905), Expect = 9e-95
Identities = 176/314 (56%), Positives = 226/314 (71%), Gaps = 1/314 (0%)
Frame = -2
Query: 939 KQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPLVPLR 760
K RLDAW+SSR++GISRAR+QSS+R GLV +NG ++K SH ++ GD+++C I+ L PLR
Sbjct: 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLR 129
Query: 759 AEPEEMQLXXXXXXXXXXXVNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSIGCXXXXXX 580
AE E++ L VNKPAHMVVHPAPGN GTLVNGILHHC LP++
Sbjct: 130 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAF 189
Query: 579 XXXXXXXXDEVNMPLLDCSLESA-VRPGIVHRIDKGTSGLLVIAKNENAHACLAEQFEKH 403
DE S+ A +RPGIVHR+DKGTSGLLV+AK+E++HA L+EQF+ H
Sbjct: 190 SDAEDISDDEE----FSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLH 245
Query: 402 TVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQARFAASRYAVTKEL 223
T+ R Y+SLT GVP++ GRIE+ I+RDPNNR+RM A+P SN QAR AASRY V + L
Sbjct: 246 TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEIL 305
Query: 222 CKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRLKCKLPSKYHGEI 43
GG +VEWRLETGRTHQIR HA+++G PLLGDE+YGGTK +A S L+ + HG++
Sbjct: 306 AGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMAKSLLQPRTAPGSHGKV 365
Query: 42 SKVISSIERPCLHA 1
K++S ++RPCLHA
Sbjct: 366 LKLVSGLQRPCLHA 379
>ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 2,
chloroplastic-like [Cucumis sativus]
Length = 452
Score = 352 bits (904), Expect = 1e-94
Identities = 172/313 (54%), Positives = 227/313 (72%)
Frame = -2
Query: 939 KQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPLVPLR 760
K RLD+W+S R+ GISRAR+QSS+R GLV VNG I+K SH ++AGD+I+C I+ L PLR
Sbjct: 76 KVRLDSWISCRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAGDVINCTISELQPLR 135
Query: 759 AEPEEMQLXXXXXXXXXXXVNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSIGCXXXXXX 580
AEPE++ L VNKPAHMVVHPAPGN GTLVN IL+HC LP +
Sbjct: 136 AEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVATSTGENE 195
Query: 579 XXXXXXXXDEVNMPLLDCSLESAVRPGIVHRIDKGTSGLLVIAKNENAHACLAEQFEKHT 400
+ ++ + E+ +RPGIVHR+DKGTSGLLV+AK+E++HA L+ QF++H+
Sbjct: 196 SDSDVSDDEFSSIGVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQHS 255
Query: 399 VFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQARFAASRYAVTKELC 220
+ R Y+SLTCGVP GRIEM I RDPNNR+RM A+ +N + A++AASRY V + L
Sbjct: 256 IERVYISLTCGVPPSTAGRIEMPICRDPNNRIRMTAIDGTNNPH-AKYAASRYNVMEILA 314
Query: 219 KGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRLKCKLPSKYHGEIS 40
+GG +VEWRLETGRTHQIR HA+++G PLLGDE+YGGTK +A+S L+ + S HG++
Sbjct: 315 QGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSLLRTRASSNCHGQLM 374
Query: 39 KVISSIERPCLHA 1
+++SS+ERPCLHA
Sbjct: 375 QLVSSLERPCLHA 387
>gb|EEC81320.1| hypothetical protein OsI_24484 [Oryza sativa Indica Group]
Length = 445
Score = 352 bits (904), Expect = 1e-94
Identities = 182/334 (54%), Positives = 231/334 (69%), Gaps = 13/334 (3%)
Frame = -2
Query: 963 DKVGEGTPKQRLDAWLSSRMEG--ISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIIS 790
+ V G + R+DAW+S+R+ G +SRARIQ+S+R GLV VNG ++K SH+++ GDI+S
Sbjct: 63 EAVPAGEGRSRIDAWISARLGGGGVSRARIQASIRAGLVVVNGRPVSKVSHMVKGGDIVS 122
Query: 789 CNIAPLVPLRAEPEEMQLXXXXXXXXXXXVNKPAHMVVHPAPGNPNGTLVNGILHHCGLP 610
C ++ L PLRAEPE++ L VNKPAHMVVHPAPGN NGTLVN ILHHC +
Sbjct: 123 CTVSELQPLRAEPEDIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKIS 182
Query: 609 SIGCXXXXXXXXXXXXXXDEVNMPLLDCS-----------LESAVRPGIVHRIDKGTSGL 463
+ C D+ ++ + D E+ VRPGIVHR+DKGTSGL
Sbjct: 183 TFTCLARNSIDDECPDSSDD-DIDVFDIDQFTTGEVSSEVREALVRPGIVHRLDKGTSGL 241
Query: 462 LVIAKNENAHACLAEQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPS 283
LV+AK+E++HA LAEQF+ HT+ R Y+SLTCG P GRIE+ IARDPNNR+RM A P
Sbjct: 242 LVVAKDEHSHAQLAEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDPNNRIRMIATPG 301
Query: 282 SNTRYQARFAASRYAVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGT 103
S RY AR AASRY V + GG +VEWRLETGRTHQIR HA+++G PLLGDE YGGT
Sbjct: 302 SGHRY-ARHAASRYKVREVFAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDETYGGT 360
Query: 102 KGLALSRLKCKLPSKYHGEISKVISSIERPCLHA 1
K +ALS L+ + PS+YH ++S +IS I+RPCLHA
Sbjct: 361 KSMALSLLRPRTPSRYHCDLSNMISKIDRPCLHA 394
>ref|NP_001058594.1| Os06g0717400 [Oryza sativa Japonica Group]
gi|75252835|sp|Q5Z8P2.1|PUS2_ORYSJ RecName: Full=RNA
pseudouridine synthase 2, chloroplastic; AltName:
Full=RNA pseudouridylate synthase 2; AltName:
Full=RNA-uridine isomerase 2; Flags: Precursor
gi|53791796|dbj|BAD53590.1| ribosomal large subunit
pseudouridine synthase-like [Oryza sativa Japonica Group]
gi|54291043|dbj|BAD61720.1| ribosomal large subunit
pseudouridine synthase-like [Oryza sativa Japonica Group]
gi|113596634|dbj|BAF20508.1| Os06g0717400 [Oryza sativa
Japonica Group] gi|215706335|dbj|BAG93191.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|222636236|gb|EEE66368.1| hypothetical protein
OsJ_22675 [Oryza sativa Japonica Group]
Length = 445
Score = 352 bits (902), Expect = 2e-94
Identities = 182/334 (54%), Positives = 230/334 (68%), Gaps = 13/334 (3%)
Frame = -2
Query: 963 DKVGEGTPKQRLDAWLSSRMEG--ISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIIS 790
+ V G + R+DAW+S+R+ G +SRARIQ+S+R GLV VNG ++K SH+++ GDI+S
Sbjct: 63 EAVPAGEGRSRIDAWISARLGGGGVSRARIQASIRAGLVVVNGRPVSKVSHMVKGGDIVS 122
Query: 789 CNIAPLVPLRAEPEEMQLXXXXXXXXXXXVNKPAHMVVHPAPGNPNGTLVNGILHHCGLP 610
C + L PLRAEPE++ L VNKPAHMVVHPAPGN NGTLVN ILHHC +
Sbjct: 123 CTVLELQPLRAEPEDIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKIS 182
Query: 609 SIGCXXXXXXXXXXXXXXDEVNMPLLDCS-----------LESAVRPGIVHRIDKGTSGL 463
+ C D+ ++ + D E+ VRPGIVHR+DKGTSGL
Sbjct: 183 TFTCLARNSIDDECPDSSDD-DIDVFDIDQFTTGEVSSEVREALVRPGIVHRLDKGTSGL 241
Query: 462 LVIAKNENAHACLAEQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPS 283
LV+AK+E++HA LAEQF+ HT+ R Y+SLTCG P GRIE+ IARDPNNR+RM A P
Sbjct: 242 LVVAKDEHSHAQLAEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDPNNRIRMIATPG 301
Query: 282 SNTRYQARFAASRYAVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGT 103
S RY AR AASRY V + GG +VEWRLETGRTHQIR HA+++G PLLGDE YGGT
Sbjct: 302 SGHRY-ARHAASRYKVREVFAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDETYGGT 360
Query: 102 KGLALSRLKCKLPSKYHGEISKVISSIERPCLHA 1
K +ALS L+ + PS+YH ++S +IS I+RPCLHA
Sbjct: 361 KSMALSLLRPRTPSRYHCDLSNMISKIDRPCLHA 394
>ref|XP_002439034.1| hypothetical protein SORBIDRAFT_10g030300 [Sorghum bicolor]
gi|241917257|gb|EER90401.1| hypothetical protein
SORBIDRAFT_10g030300 [Sorghum bicolor]
Length = 441
Score = 351 bits (900), Expect = 4e-94
Identities = 184/331 (55%), Positives = 229/331 (69%), Gaps = 12/331 (3%)
Frame = -2
Query: 957 VGEGTPKQRLDAWLSSRMEG--ISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCN 784
VGEG + R+DAW+S+R+ G +SRAR+Q+S+R GLV VNG ++K SH ++ GD++SC
Sbjct: 68 VGEG--RSRIDAWISARLGGGGVSRARVQASIRAGLVAVNGRPVSKVSHTVKGGDLVSCT 125
Query: 783 IAPLVPLRAEPEEMQLXXXXXXXXXXXVNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSI 604
++ L PLRAE E++ L VNKPAHMVVHPAPGN NGTLVN ILHHC + +
Sbjct: 126 VSELQPLRAEAEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTF 185
Query: 603 GCXXXXXXXXXXXXXXDEV-------NMPLLDCSLE---SAVRPGIVHRIDKGTSGLLVI 454
C D+ D S E + VRPGIVHR+DKGTSGLLV+
Sbjct: 186 TCLARSSTGDECLDSSDDDIDVFNVDQFATEDASSEVRNALVRPGIVHRLDKGTSGLLVV 245
Query: 453 AKNENAHACLAEQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNT 274
AK+E++HA LAEQF+ HT+ R Y+SLTCGVP GRIE SIARDPNNR+RM A+ S
Sbjct: 246 AKDEHSHAQLAEQFKLHTIRRVYISLTCGVPNPNSGRIEASIARDPNNRIRMIAIAGSGH 305
Query: 273 RYQARFAASRYAVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGL 94
RY AR AASRY V + GG +VEWRLETGRTHQIR HA++IG PLLGDE YGGTK +
Sbjct: 306 RY-ARHAASRYKVREVFVGGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDETYGGTKSM 364
Query: 93 ALSRLKCKLPSKYHGEISKVISSIERPCLHA 1
ALS L+ + PSKYH ++S +IS ++RPCLHA
Sbjct: 365 ALSLLRPRTPSKYHSDLSNLISKVDRPCLHA 395
>ref|XP_006390244.1| hypothetical protein EUTSA_v10018588mg [Eutrema salsugineum]
gi|557086678|gb|ESQ27530.1| hypothetical protein
EUTSA_v10018588mg [Eutrema salsugineum]
Length = 432
Score = 349 bits (896), Expect = 1e-93
Identities = 175/313 (55%), Positives = 226/313 (72%)
Frame = -2
Query: 939 KQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPLVPLR 760
K RLD+W+SSR+ G+SRAR+QSS+R GLV VNG ++K SH ++AGD ++C I+ L PL+
Sbjct: 82 KIRLDSWISSRVHGVSRARVQSSIRLGLVSVNGRVVDKVSHNVKAGDEVNCTISELQPLK 141
Query: 759 AEPEEMQLXXXXXXXXXXXVNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSIGCXXXXXX 580
AEPE++ L VNKPAHMVVHPAPGNP GTLVNGILHHC LP +
Sbjct: 142 AEPEDIPLDIVYEDKHLLVVNKPAHMVVHPAPGNPTGTLVNGILHHCSLPCVAYSNPEDD 201
Query: 579 XXXXXXXXDEVNMPLLDCSLESAVRPGIVHRIDKGTSGLLVIAKNENAHACLAEQFEKHT 400
DE SL ++VRPGIVHR+DKGTSGLLV+AK+E++HA LAEQF+ HT
Sbjct: 202 SDEETLSDDEEMTS--SSSLAASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLAEQFKLHT 259
Query: 399 VFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQARFAASRYAVTKELC 220
+ R Y+SLT GVP+ GR+++ I RDPNNR+RM A+P S +R +AR AASRY V + L
Sbjct: 260 IERVYISLTSGVPSPSQGRVDIPIGRDPNNRIRMAAIPGSLSRGKARHAASRYKVIETLA 319
Query: 219 KGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRLKCKLPSKYHGEIS 40
GG +VEWRLETGRTHQIR HA+++G PLLGDE+YGGTK +ALS L+ ++ +I
Sbjct: 320 GGGSALVEWRLETGRTHQIRAHAKYMGVPLLGDEVYGGTKSVALSLLQRRVSRSDQEQIL 379
Query: 39 KVISSIERPCLHA 1
+++S ++RPCLHA
Sbjct: 380 ELVSRMDRPCLHA 392
>ref|XP_004966473.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Setaria
italica]
Length = 437
Score = 348 bits (892), Expect = 3e-93
Identities = 181/333 (54%), Positives = 228/333 (68%), Gaps = 12/333 (3%)
Frame = -2
Query: 963 DKVGEGTPKQRLDAWLSSRMEG--ISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIIS 790
+ V G + R+DAW+S+R+ G +SRAR+Q+S+R GLV VNG ++K SH+++ GD++S
Sbjct: 59 EAVPAGEGRSRVDAWISARLGGGGVSRARVQASIRAGLVAVNGRPVSKVSHMVKGGDLVS 118
Query: 789 CNIAPLVPLRAEPEEMQLXXXXXXXXXXXVNKPAHMVVHPAPGNPNGTLVNGILHHCGLP 610
C ++ L PLRAE E++ L VNKPAHMVVHPAPGN NGTLVN ILHHC +
Sbjct: 119 CTVSELQPLRAEAEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCRIS 178
Query: 609 SIGCXXXXXXXXXXXXXXDE-------VNMPLLDCSLE---SAVRPGIVHRIDKGTSGLL 460
+ C D+ D S E + VRPGIVHR+DKGTSGLL
Sbjct: 179 TFTCLARNSTGDECPDSSDDDVDVFDVDQFTTEDVSSEVRNALVRPGIVHRLDKGTSGLL 238
Query: 459 VIAKNENAHACLAEQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSS 280
V+AK+E++HA LAEQF+ HT+ R Y+SLTCGVP GRIE SIARDPNNR+RM A+ S
Sbjct: 239 VVAKDEHSHAQLAEQFKLHTIRRVYISLTCGVPHPNSGRIEASIARDPNNRIRMIAIAGS 298
Query: 279 NTRYQARFAASRYAVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTK 100
RY AR AASRY V + GG +VEWRLETGRTHQIR HA+++G PLLGDE YGGTK
Sbjct: 299 GQRY-ARHAASRYKVREVFAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDETYGGTK 357
Query: 99 GLALSRLKCKLPSKYHGEISKVISSIERPCLHA 1
+ALS L+ + PSKYH +S +IS ++RPCLHA
Sbjct: 358 SMALSLLRPRTPSKYHSGLSDLISKVDRPCLHA 390
>gb|EOY15125.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
Length = 433
Score = 347 bits (889), Expect = 7e-93
Identities = 172/313 (54%), Positives = 226/313 (72%)
Frame = -2
Query: 939 KQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPLVPLR 760
K RLD+W+SSR++GISRAR+QSS++ GLV VNG ++K SH +R GD ++C I+ L PLR
Sbjct: 79 KLRLDSWISSRIQGISRARVQSSIKSGLVTVNGRVVDKVSHGLRHGDKVNCVISELQPLR 138
Query: 759 AEPEEMQLXXXXXXXXXXXVNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSIGCXXXXXX 580
AEPE++ L VNKP HMVVHPAPGN GTLVNGILHHC LP++
Sbjct: 139 AEPEDIPLDIVYEDDHVLVVNKPPHMVVHPAPGNATGTLVNGILHHCSLPTVALSEKEVL 198
Query: 579 XXXXXXXXDEVNMPLLDCSLESAVRPGIVHRIDKGTSGLLVIAKNENAHACLAEQFEKHT 400
D+ S ++VRPGIVHR+DKGTSGLLV+AK+E++H+ L+EQF++HT
Sbjct: 199 SDTEDVSDDDEGF-CYGASAAASVRPGIVHRLDKGTSGLLVVAKDEHSHSHLSEQFKQHT 257
Query: 399 VFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQARFAASRYAVTKELC 220
+ R Y+SLTCGVP+ GR+++SI RD NNRVRM AVP N +AR AASRY V + L
Sbjct: 258 IQRVYISLTCGVPSPSAGRVDISIGRDSNNRVRMIAVPGLNHHGRARHAASRYKVIEVLA 317
Query: 219 KGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRLKCKLPSKYHGEIS 40
GG +++WRLETGRTHQIR HA+++G PLLGDE+YGGTK +ALS L+ + P Y+ ++S
Sbjct: 318 GGGSALIQWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMALSLLRPRTPPNYNDQLS 377
Query: 39 KVISSIERPCLHA 1
+++S +ERP LHA
Sbjct: 378 RLVSRLERPYLHA 390
>ref|XP_002301949.1| pseudouridine synthase family protein [Populus trichocarpa]
gi|222843675|gb|EEE81222.1| pseudouridine synthase family
protein [Populus trichocarpa]
Length = 444
Score = 347 bits (889), Expect = 7e-93
Identities = 180/321 (56%), Positives = 225/321 (70%)
Frame = -2
Query: 963 DKVGEGTPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCN 784
+ V + K RLD+W+SSR+ GISRAR+QSS++ GLV VNG I+K SH ++AGD ++C
Sbjct: 85 ESVDSKSGKSRLDSWISSRISGISRARVQSSIKSGLVSVNGKVIDKVSHNVKAGDKVNCV 144
Query: 783 IAPLVPLRAEPEEMQLXXXXXXXXXXXVNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSI 604
I+ L PLRAEPE + L VNKPAHMVVHPAPGN GTLVNGILHHC LP++
Sbjct: 145 ISELQPLRAEPENIPLDIVYEDENVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTV 204
Query: 603 GCXXXXXXXXXXXXXXDEVNMPLLDCSLESAVRPGIVHRIDKGTSGLLVIAKNENAHACL 424
DE L S ++VRPGIVHR+DKGTSGLLV+AK+E++HA L
Sbjct: 205 SSQEVLSGAEDVSDDDDE---GLCSSSYAASVRPGIVHRLDKGTSGLLVVAKDEHSHAHL 261
Query: 423 AEQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQARFAASR 244
+EQF+ HT+ R YVSLTCGVPA GRI++ I RD +NR+RM A+ N R QAR AASR
Sbjct: 262 SEQFKLHTIKRVYVSLTCGVPAPMAGRIDVPIGRDVSNRIRMAAIVEPN-RGQARHAASR 320
Query: 243 YAVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRLKCKLP 64
Y V + L GG +VEWRLETGRTHQIR HA++IG PLLGDE+YGGT+ +ALS L+ +
Sbjct: 321 YKVIEILAGGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDEVYGGTQNMALSLLRSRTQ 380
Query: 63 SKYHGEISKVISSIERPCLHA 1
H ++S +S +ERPCLHA
Sbjct: 381 PSCHRQLSLSLSGLERPCLHA 401
>ref|XP_003563280.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like
[Brachypodium distachyon]
Length = 439
Score = 346 bits (888), Expect = 9e-93
Identities = 176/332 (53%), Positives = 228/332 (68%), Gaps = 11/332 (3%)
Frame = -2
Query: 963 DKVGEGTPKQRLDAWLSSRMEG--ISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIIS 790
+ V G + R+DAW+S+R+ G +SRAR+Q+S+R GLV VNG ++K S ++ GD +S
Sbjct: 59 EAVPAGEGRSRVDAWISARLGGGGVSRARVQASIRAGLVAVNGRPVSKVSQTVKGGDTVS 118
Query: 789 CNIAPLVPLRAEPEEMQLXXXXXXXXXXXVNKPAHMVVHPAPGNPNGTLVNGILHHCGLP 610
C ++ L PLRAE E++ L VNKPAHMVVHPAPGN NGTLVN ILHHC +
Sbjct: 119 CTVSELQPLRAEAEDIPLDIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKIS 178
Query: 609 SIGC---------XXXXXXXXXXXXXXDEVNMPLLDCSLESAVRPGIVHRIDKGTSGLLV 457
+ C D+ N + ++ VRPGIVHR+DKGTSGLLV
Sbjct: 179 TFTCLARNSIDDECPESSDDDIDVFDVDQFNGEVSSEVRDAIVRPGIVHRLDKGTSGLLV 238
Query: 456 IAKNENAHACLAEQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSN 277
+AK+E++HA LAEQF+ HT+ R Y+SLTCGVP RIE+ I+RDPNNR+RM A P S
Sbjct: 239 VAKDEHSHAQLAEQFKLHTIRRIYISLTCGVPNPNSARIEVPISRDPNNRIRMIAAPGSG 298
Query: 276 TRYQARFAASRYAVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKG 97
RY AR AASRY V + C GG +VEW+LETGRTHQIR HA+++G+PLLGDE YGG+K
Sbjct: 299 HRY-ARHAASRYKVREVFCSGGSALVEWKLETGRTHQIRAHAKYLGYPLLGDETYGGSKS 357
Query: 96 LALSRLKCKLPSKYHGEISKVISSIERPCLHA 1
+ALS L+ + PS+YHG++S +IS I+RPCLHA
Sbjct: 358 MALSLLRPRTPSRYHGDLSNLISKIDRPCLHA 389
>ref|XP_006656497.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Oryza
brachyantha]
Length = 442
Score = 345 bits (886), Expect = 1e-92
Identities = 178/333 (53%), Positives = 231/333 (69%), Gaps = 12/333 (3%)
Frame = -2
Query: 963 DKVGEGTPKQRLDAWLSSRMEG--ISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIIS 790
+ V G + R+DAW+SSR+ G +SRAR+Q+S+R GLV VNG ++K SH+++ GD++S
Sbjct: 61 EAVPAGEGRSRIDAWISSRLGGGGVSRARVQASIRAGLVAVNGRPVSKVSHMVKGGDMVS 120
Query: 789 CNIAPLVPLRAEPEEMQLXXXXXXXXXXXVNKPAHMVVHPAPGNPNGTLVNGILHHCGLP 610
C ++ L PLRAEPE++ L VNKPAHMVVHPAPGN NGTLVN ILHHC +
Sbjct: 121 CTVSELQPLRAEPEDIPLDIVYEDQHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKIS 180
Query: 609 SIGC-XXXXXXXXXXXXXXDEVNMPLLDCSL---------ESAVRPGIVHRIDKGTSGLL 460
+ C D++++ +D E+ VRPGIVHR+DKGTSGLL
Sbjct: 181 TFTCLARNSTDDECPDSSDDDIDVFHVDQFTTGEVSSEVREALVRPGIVHRLDKGTSGLL 240
Query: 459 VIAKNENAHACLAEQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSS 280
V+AK+E++HA LAEQF+ HT+ R Y+SLTCG P GRIE+ IARDPNNR+RM A P S
Sbjct: 241 VVAKDEHSHAQLAEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDPNNRIRMIATPGS 300
Query: 279 NTRYQARFAASRYAVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTK 100
RY AR AASRY V + GG +VEW+LETGRTHQIR HA+++G PLLGDE YGGTK
Sbjct: 301 GHRY-ARHAASRYKVREVFAGGGSALVEWKLETGRTHQIRAHAKYLGIPLLGDETYGGTK 359
Query: 99 GLALSRLKCKLPSKYHGEISKVISSIERPCLHA 1
+ALS L+ + S+YH ++S +I+ I+RPCLHA
Sbjct: 360 SMALSLLRPRTSSRYHCDLSNLIAKIDRPCLHA 392
>gb|ACG41877.1| RNA binding protein [Zea mays]
Length = 439
Score = 343 bits (881), Expect = 6e-92
Identities = 181/331 (54%), Positives = 226/331 (68%), Gaps = 12/331 (3%)
Frame = -2
Query: 957 VGEGTPKQRLDAWLSSRMEG--ISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCN 784
VGEG + R+DAW+S+R+ G +SRAR+Q+S+R GLV VNG ++K SH ++ GD++SC
Sbjct: 65 VGEG--RSRVDAWISARLGGGGVSRARVQASIRAGLVAVNGRPVSKVSHTVKGGDLVSCT 122
Query: 783 IAPLVPLRAEPEEMQLXXXXXXXXXXXVNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSI 604
++ L PLRAE E++ L VNKPAHMVVHPAPGN GTLVN ILHHC + +
Sbjct: 123 VSELQPLRAEAEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNAKGTLVNAILHHCKISTF 182
Query: 603 GCXXXXXXXXXXXXXXDE-------VNMPLLDCSLE---SAVRPGIVHRIDKGTSGLLVI 454
C DE D S E + VRPGIVHR+DKGTSGLLV+
Sbjct: 183 TCLARSSAGDECPDSSDEDTDVFHVDQFAAEDVSSEVRNALVRPGIVHRLDKGTSGLLVV 242
Query: 453 AKNENAHACLAEQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNT 274
AK+E++HA LAEQF+ HT+ R Y+SLTCG P GRIE SIARDPNNR+RM A+ S
Sbjct: 243 AKDEHSHARLAEQFKLHTIRRVYISLTCGAPNPNSGRIEASIARDPNNRIRMTAIAGSGH 302
Query: 273 RYQARFAASRYAVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGL 94
RY AR AASRY V + GG +VEWRLETGRTHQIR HA++IG PLLGDE YGGT+ +
Sbjct: 303 RY-ARNAASRYKVREVFAGGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDETYGGTQSM 361
Query: 93 ALSRLKCKLPSKYHGEISKVISSIERPCLHA 1
ALS L+ + PSKYH +S ++S ++RPCLHA
Sbjct: 362 ALSLLRPRSPSKYHSGLSNLLSKVDRPCLHA 392
>ref|NP_001140404.1| RNA binding protein [Zea mays] gi|194699356|gb|ACF83762.1| unknown
[Zea mays] gi|413943105|gb|AFW75754.1| RNA binding
protein [Zea mays]
Length = 419
Score = 343 bits (881), Expect = 6e-92
Identities = 181/331 (54%), Positives = 226/331 (68%), Gaps = 12/331 (3%)
Frame = -2
Query: 957 VGEGTPKQRLDAWLSSRMEG--ISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCN 784
VGEG + R+DAW+S+R+ G +SRAR+Q+S+R GLV VNG ++K SH ++ GD++SC
Sbjct: 65 VGEG--RSRVDAWISARLGGGGVSRARVQASIRAGLVAVNGRPVSKVSHTVKGGDLVSCT 122
Query: 783 IAPLVPLRAEPEEMQLXXXXXXXXXXXVNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSI 604
++ L PLRAE E++ L VNKPAHMVVHPAPGN GTLVN ILHHC + +
Sbjct: 123 VSELQPLRAEAEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNAKGTLVNAILHHCKISTF 182
Query: 603 GCXXXXXXXXXXXXXXDE-------VNMPLLDCSLE---SAVRPGIVHRIDKGTSGLLVI 454
C DE D S E + VRPGIVHR+DKGTSGLLV+
Sbjct: 183 TCLARSSAGDECPDSTDEDTDVFHVDQFAAEDVSSEVRNALVRPGIVHRLDKGTSGLLVV 242
Query: 453 AKNENAHACLAEQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNT 274
AK+E++HA LAEQF+ HT+ R Y+SLTCG P GRIE SIARDPNNR+RM A+ S
Sbjct: 243 AKDEHSHARLAEQFKLHTIRRVYISLTCGAPNPNSGRIEASIARDPNNRIRMTAIAGSGH 302
Query: 273 RYQARFAASRYAVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGL 94
RY AR AASRY V + GG +VEWRLETGRTHQIR HA++IG PLLGDE YGGT+ +
Sbjct: 303 RY-ARNAASRYKVREVFAGGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDETYGGTQSM 361
Query: 93 ALSRLKCKLPSKYHGEISKVISSIERPCLHA 1
ALS L+ + PSKYH +S ++S ++RPCLHA
Sbjct: 362 ALSLLRPRSPSKYHSGLSNLLSKVDRPCLHA 392
>ref|XP_006302277.1| hypothetical protein CARUB_v10020321mg [Capsella rubella]
gi|482570987|gb|EOA35175.1| hypothetical protein
CARUB_v10020321mg [Capsella rubella]
Length = 432
Score = 339 bits (870), Expect = 1e-90
Identities = 174/313 (55%), Positives = 222/313 (70%)
Frame = -2
Query: 939 KQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPLVPLR 760
K RLD+W+SSR+ G+SRAR+QSS+R GLV VNG ++K SH ++AGD ++C I+ L PL+
Sbjct: 81 KIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKVSHNVKAGDEVNCTISELQPLK 140
Query: 759 AEPEEMQLXXXXXXXXXXXVNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSIGCXXXXXX 580
AE E++ L VNKPAHMVVHPAPGNP GTLVNGILHHC LPS+
Sbjct: 141 AEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLVNGILHHCSLPSVAYSSPEDD 200
Query: 579 XXXXXXXXDEVNMPLLDCSLESAVRPGIVHRIDKGTSGLLVIAKNENAHACLAEQFEKHT 400
D M S ++VRPGIVHR+DKGT+GLLV+AK+E++HA LAEQF+ HT
Sbjct: 201 DSDDESFSDGEEMTS-SSSYAASVRPGIVHRLDKGTTGLLVVAKDEHSHAHLAEQFKLHT 259
Query: 399 VFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQARFAASRYAVTKELC 220
+ R YVSLT GVP+ GRIE+ I RD +NR+RM A+P + +AR AASRY V + L
Sbjct: 260 IERVYVSLTTGVPSPPQGRIEIPIGRDSSNRIRMAAIPGGLSSGRARHAASRYKVIETLA 319
Query: 219 KGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRLKCKLPSKYHGEIS 40
GG +VEWRLETGRTHQIR HA+++G PLLGDE+YGGTK +ALS L+ ++ EI
Sbjct: 320 GGGSALVEWRLETGRTHQIRAHAKYMGVPLLGDEVYGGTKSMALSLLQKRVCRSDQDEII 379
Query: 39 KVISSIERPCLHA 1
++IS ++RPCLHA
Sbjct: 380 ELISRLDRPCLHA 392