BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00012140
         (628 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI29879.3| unnamed protein product [Vitis vinifera]               90   5e-16
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...    89   8e-16
gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Th...    85   2e-14
gb|EOY09355.1| Nuclear RNA polymerase A1, putative isoform 1 [Th...    85   2e-14
ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I sub...    84   4e-14
ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I sub...    83   7e-14
gb|ESW17626.1| hypothetical protein PHAVU_007G255400g [Phaseolus...    82   1e-13
ref|XP_004967186.1| PREDICTED: DNA-directed RNA polymerase I sub...    82   1e-13
ref|XP_002308049.1| predicted protein [Populus trichocarpa]            81   3e-13
ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Me...    80   4e-13
ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I sub...    80   6e-13
ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I sub...    79   1e-12
ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citr...    78   2e-12
ref|XP_002440173.1| hypothetical protein SORBIDRAFT_09g027223 [S...    78   2e-12
ref|XP_003559192.1| PREDICTED: DNA-directed RNA polymerase I sub...    77   4e-12
ref|XP_002981487.1| hypothetical protein SELMODRAFT_233747 [Sela...    77   5e-12
tpg|DAA45226.1| TPA: putative DNA-directed RNA polymerase family...    76   9e-12
ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I sub...    75   1e-11
ref|XP_006656244.1| PREDICTED: DNA-directed RNA polymerase I sub...    75   2e-11
ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...    75   2e-11

>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score = 90.1 bits (222), Expect = 5e-16
 Identities = 66/238 (27%), Positives = 102/238 (42%), Gaps = 35/238 (14%)
 Frame = +1

Query: 7   CTHCHHFKLTAEKLNDYADKLDEIRKNNSVDSK--------------------------F 108
           C  CHHFK ++  +  Y  +L+ I K + V +K                           
Sbjct: 104 CFFCHHFKTSSSLVQKYVSQLELISKGDVVGAKNLDSISPSESSYPEDSDGSHVSCSSTV 163

Query: 109 KSSSNE------EQYSWTSFQLSEAREILSSMISELKLQKNKCANCGLNTPKVTSPVFGR 270
            SS+ +      +Q  WTS Q  EA  ++ +    LKL+   C NC   +P+VT P FG 
Sbjct: 164 NSSARDNCSVHLKQQEWTSLQCIEAMSVMDNF---LKLKHRDCKNCKAKSPQVTKPTFGW 220

Query: 271 LHMSELSKKEVNANILKGLKSHR---GTRRKDHSSEVSANQTMGDNVTDLXXXXXXXXXX 441
            HM+ LS  +  AN+++G K  R   G    +  S ++    + D VT            
Sbjct: 221 FHMAGLSDAQTRANVIRGSKLERPLNGVDTDETHSSIAPTDGIQDTVT-----------K 269

Query: 442 XXXLNGADMMVKNLMEKTESKFVKDRLLTPIEIKDHLRLLWENETRICCLMWDIQQEK 615
                GA   ++ + +K+   F    LL P E++D +  LWENE  +C  + DI QE+
Sbjct: 270 RLERKGAQAPIEFIKQKS---FFSGPLL-PSEVRDIMERLWENEAELCSFISDILQER 323


>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
           vinifera]
          Length = 1740

 Score = 89.4 bits (220), Expect = 8e-16
 Identities = 71/252 (28%), Positives = 106/252 (42%), Gaps = 49/252 (19%)
 Frame = +1

Query: 7   CTHCHHFKLTAEKLNDYADKLDEIRKNNSVDSK--------------------------F 108
           C  CHHFK ++  +  Y  +L+ I K + V +K                           
Sbjct: 153 CFFCHHFKTSSSLVQKYVSQLELISKGDVVGAKNLDSISPSESSYPEDSDGSHVSCSSTV 212

Query: 109 KSSSNE------EQYSWTSFQLSEAREILSSMISELKLQKNKCANCGLNTPKVTSPVFGR 270
            SS+ +      +Q  WTS Q  EA  ++ +    LKL+   C NC   +P+VT P FG 
Sbjct: 213 NSSARDNCSVHLKQQEWTSLQCIEAMSVMDNF---LKLKHRDCKNCKAKSPQVTKPTFGW 269

Query: 271 LHMSELSKKEVNANILKGLKSHRGTRR---KDHSSEVSANQTMGDNVTDLXXXXXXXXXX 441
            HM+ LS  +  AN+++G K  R   R   +  SSEV       +NV D+          
Sbjct: 270 FHMAGLSDAQTRANVIRGSKLERPLSRVAEEKSSSEV-------ENVNDMFPWGDGVDTD 322

Query: 442 XXXLNGA------DMMVKNLMEK---TESKFVKDRL-----LTPIEIKDHLRLLWENETR 579
               + A      D + K L  K      +F+K +      L P E++D +  LWENE  
Sbjct: 323 ETHSSIAPTDGIQDTVTKRLERKGAQAPIEFIKQKSFFSGPLLPSEVRDIMERLWENEAE 382

Query: 580 ICCLMWDIQQEK 615
           +C  + DI QE+
Sbjct: 383 LCSFISDILQER 394


>gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
          Length = 1689

 Score = 84.7 bits (208), Expect = 2e-14
 Identities = 64/237 (27%), Positives = 102/237 (43%), Gaps = 33/237 (13%)
 Frame = +1

Query: 1   QMCTHCHHFKLTAEKLNDYADKLDEIRKNNSVDSKFKSSSNEEQYS-------------- 138
           ++C  C+HF+    ++     +L  I   + V +K   S + +  S              
Sbjct: 102 RICFFCYHFRAEKTEVERCVSQLKLIGNGDIVGAKRLDSDSADASSYSDYNEGSQESGSI 161

Query: 139 -----------WTSFQLSEAREILSSMISELKLQKNKCANCGLNTPKVTSPVFGRLHMSE 285
                      WTS QL EA  +L++    LKL+ NKC NC    P +T PVFG LHM+ 
Sbjct: 162 VHNSEAVKPKEWTSLQLMEAMSVLNNF---LKLKYNKCKNCDAKNPNITKPVFGWLHMNG 218

Query: 286 LSKKEVNANILKGLK-----SHRGTRRKDHSSEVSANQTMGDNVTDLXXXXXXXXXXXXX 450
           +   ++  N+++G K     S       + + +VS++   G+ V                
Sbjct: 219 MLGAQMRENVIRGCKMVDTFSDEAGSGLEDADDVSSS---GNGVDIAEMDTSEIGFTGSE 275

Query: 451 LNGADMMVKNL---MEKTESKFVKDRLLTPIEIKDHLRLLWENETRICCLMWDIQQE 612
            NGA    K     +E  + K +    L P E+K   +LLWENE  +C ++ DIQQ+
Sbjct: 276 GNGAKARKKKAQVPLEFMKQKNLFSGPLLPSEVKKITKLLWENEVELCSIISDIQQQ 332


>gb|EOY09355.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
          Length = 1665

 Score = 84.7 bits (208), Expect = 2e-14
 Identities = 64/237 (27%), Positives = 102/237 (43%), Gaps = 33/237 (13%)
 Frame = +1

Query: 1   QMCTHCHHFKLTAEKLNDYADKLDEIRKNNSVDSKFKSSSNEEQYS-------------- 138
           ++C  C+HF+    ++     +L  I   + V +K   S + +  S              
Sbjct: 102 RICFFCYHFRAEKTEVERCVSQLKLIGNGDIVGAKRLDSDSADASSYSDYNEGSQESGSI 161

Query: 139 -----------WTSFQLSEAREILSSMISELKLQKNKCANCGLNTPKVTSPVFGRLHMSE 285
                      WTS QL EA  +L++    LKL+ NKC NC    P +T PVFG LHM+ 
Sbjct: 162 VHNSEAVKPKEWTSLQLMEAMSVLNNF---LKLKYNKCKNCDAKNPNITKPVFGWLHMNG 218

Query: 286 LSKKEVNANILKGLK-----SHRGTRRKDHSSEVSANQTMGDNVTDLXXXXXXXXXXXXX 450
           +   ++  N+++G K     S       + + +VS++   G+ V                
Sbjct: 219 MLGAQMRENVIRGCKMVDTFSDEAGSGLEDADDVSSS---GNGVDIAEMDTSEIGFTGSE 275

Query: 451 LNGADMMVKNL---MEKTESKFVKDRLLTPIEIKDHLRLLWENETRICCLMWDIQQE 612
            NGA    K     +E  + K +    L P E+K   +LLWENE  +C ++ DIQQ+
Sbjct: 276 GNGAKARKKKAQVPLEFMKQKNLFSGPLLPSEVKKITKLLWENEVELCSIISDIQQQ 332


>ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
           arietinum]
          Length = 1650

 Score = 83.6 bits (205), Expect = 4e-14
 Identities = 64/224 (28%), Positives = 99/224 (44%), Gaps = 24/224 (10%)
 Frame = +1

Query: 7   CTHCHHFKLTAEKLNDYADKLDEIRKNNSVDSKFK-----------SSSNEEQYS----- 138
           C  CHHF+ +  ++   A++L+ I K N   +K             S  N+ Q S     
Sbjct: 104 CFSCHHFQASRNEVELRANQLELIMKGNIAKAKNLDAINLDESADLSDGNDSQCSSDEQL 163

Query: 139 ---WTSFQLSEAREILSSMISELKLQKNKCANCGLNTPKVTSPVFGRLHMSELSKKEVNA 309
              WTS Q SEA  +L      LK +  KC NCG   PK+T P FG  H+  LS  +  A
Sbjct: 164 GENWTSLQFSEAMSVLRKF---LKKEFRKCQNCGNINPKITKPTFGWFHVKALSAAQARA 220

Query: 310 NILKGLKSHRGTRRKDHSSEVSANQTMGD-NVTDLXXXXXXXXXXXXXLNGADMMVKNLM 486
           N++ G+ +         S  +  + ++G+ + TD+             +   D    N  
Sbjct: 221 NVISGIDASLA------SEIIHDDISLGNGDTTDV-----------EDITSGD--TANSN 261

Query: 487 EKTESKFVKDRLLT----PIEIKDHLRLLWENETRICCLMWDIQ 606
            K ++K  +   L+    P +++  L LLWENE R+C  + DIQ
Sbjct: 262 AKRQNKLARHNKLSGSLLPSQVQGILELLWENEARLCLYISDIQ 305


>ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
           arietinum]
          Length = 1660

 Score = 82.8 bits (203), Expect = 7e-14
 Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 24/224 (10%)
 Frame = +1

Query: 7   CTHCHHFKLTAEKLNDYADKLDEIRKNNSVDSKFK-------------------SSSNEE 129
           C  CHHF+ + +++   A++L+ I K N   +K                     SS+ + 
Sbjct: 104 CFSCHHFQASRKEVELRANQLELIMKGNIAKAKNLDEINLDESADLCDGDDSQCSSAEQL 163

Query: 130 QYSWTSFQLSEAREILSSMISELKLQKNKCANCGLNTPKVTSPVFGRLHMSELSKKEVNA 309
             +WTS Q SEA  +L      LK +  KC NCG   PK+T P FG  H+  LS  +  A
Sbjct: 164 GENWTSLQFSEAMSVLRKF---LKKEYRKCQNCGYINPKITIPTFGWFHVKALSAAQARA 220

Query: 310 NILKGLKSHRGTRRKDHSSEVS-ANQTMGDNVTDLXXXXXXXXXXXXXLNGADMMVKNLM 486
           N++ G             ++VS A++ + D+++               +   D+   N  
Sbjct: 221 NVISG-------------NDVSLASEIIHDDIS----LGNGDTTDVEDITSGDIANSNAK 263

Query: 487 EKTESKFVKDRLLT----PIEIKDHLRLLWENETRICCLMWDIQ 606
              + K +    L     P +++  L LLWEN+ R+C  + DIQ
Sbjct: 264 RHNKEKQISSHTLAGSLLPSQVQRILELLWENDARLCLYISDIQ 307


>gb|ESW17626.1| hypothetical protein PHAVU_007G255400g [Phaseolus vulgaris]
          Length = 1637

 Score = 82.0 bits (201), Expect = 1e-13
 Identities = 61/223 (27%), Positives = 93/223 (41%), Gaps = 21/223 (9%)
 Frame = +1

Query: 7   CTHCHHFKLTAEKLNDYADKLDEIRKNNSVDSKFKSS--SNEEQYS-------------- 138
           C  CHHF  + +++     + + I K + + +K   S  S+E  +S              
Sbjct: 104 CFSCHHFHASRKEVEMRTSQFELIMKGDIIRAKSLDSIISDESNHSGDGDESQGVEQLGE 163

Query: 139 -WTSFQLSEAREILSSMISELKLQKNKCANCGLNTPKVTSPVFGRLHMSELSKKEVNANI 315
            W+S Q SEA  +L   +     +  KC NCG+  P+++ P FG  HM+ LS  E  AN 
Sbjct: 164 NWSSLQFSEAMSVLRKFLLR---KYKKCQNCGVVNPRISKPTFGWFHMNVLSDDEARANT 220

Query: 316 LKGLKSHRGTRRKDHSSEVSANQTMGDNVTDLXXXXXXXXXXXXXLNGADMMVKNLMEKT 495
           ++ L+S       D  S      T  +++T                 G     K    K 
Sbjct: 221 MRALESE---TINDDMSLGGGETTEEEDITS---------------TGTAKRDKRKKGKL 262

Query: 496 ESKFVKDRLLT----PIEIKDHLRLLWENETRICCLMWDIQQE 612
            SK      L+    P ++K  L LLWENE R+C  + DIQ +
Sbjct: 263 SSKLAAQNKLSGSLLPSQVKGILELLWENEARLCSYISDIQDQ 305


>ref|XP_004967186.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Setaria
           italica]
          Length = 1682

 Score = 82.0 bits (201), Expect = 1e-13
 Identities = 67/231 (29%), Positives = 103/231 (44%), Gaps = 29/231 (12%)
 Frame = +1

Query: 7   CTHCHHFKLTAEKLNDYADKL------DEIRKNNSVDSKFKSSSNEE------------- 129
           C HCH F+L  E+++ Y ++L      D  R  N  DS  ++S +EE             
Sbjct: 124 CFHCHKFRLNKEQVDRYVNELELLVKGDVARAKNLEDSGKRASPSEEDEDITEATSCDKP 183

Query: 130 -----QYSWTSFQLSEAREILSSMISELKLQKNKCANCGLNTPKVTSPVFGRLHMSELSK 294
                + +WTS QL E   I S +   +K ++ KCA C + +P  +SP+FG L + + S 
Sbjct: 184 SPEKDKKTWTSVQLKEVLSIFSKI---MKKRQKKCAKCDMKSPTFSSPIFGWL-VKDTSA 239

Query: 295 KEVNANILKG--LKSHRGTRRKDHSSEVSANQTMGDNVTDLXXXXXXXXXXXXXLNGADM 468
             V AN +    LK   G     HSS  +      +  T                 G+  
Sbjct: 240 SAVRANAIADFKLKGDGGA----HSSGETGVSGFDEERTS------------PQSKGSIN 283

Query: 469 MVKNLMEKTESKFVKD---RLLTPIEIKDHLRLLWENETRICCLMWDIQQE 612
            V++L + T  +FV     + L P E++  L+ LW+NE R C L+ D QQ+
Sbjct: 284 EVRHLSDDTIKEFVASSGKKHLLPTEVESILKGLWKNEARFCMLLCDFQQD 334


>ref|XP_002308049.1| predicted protein [Populus trichocarpa]
          Length = 1168

 Score = 80.9 bits (198), Expect = 3e-13
 Identities = 65/238 (27%), Positives = 99/238 (41%), Gaps = 36/238 (15%)
 Frame = +1

Query: 7   CTHCHHFKLTAEKLNDYADKLDEIRKNNSVDSKFKSS----------------------- 117
           C  C HF+  + ++  +  +L+ I K + V +K   S                       
Sbjct: 102 CFFCFHFRADSNQVEKFVSQLELIIKGDVVGAKRLDSFSPIEASLPEDSDGSSESCSTIH 161

Query: 118 ------SNEE--QYSWTSFQLSEAREILSSMISELKLQKNKCANCGLNTPKVTSPVFGRL 273
                 +NE+  Q  WTS QLSEA  IL++    LKL+  KC NC  + P +  P FG  
Sbjct: 162 SGARHPNNEQSKQSEWTSLQLSEAMSILNNF---LKLESKKCKNCSASNPNIRKPTFGWF 218

Query: 274 HMSELSKKEVNANILKGLKSHRGTRRKDHSSEVSANQTMGDNVTDLXXXXXXXXXXXXXL 453
           H + LS   + +N++K               + +     G    +L              
Sbjct: 219 HWAGLSNAAIRSNLIK---------------QQTIEGPFGGAFEELIDAEDATKSPSNKE 263

Query: 454 NGADMMVKNLMEKTESKFV--KDRL---LTPIEIKDHLRLLWENETRICCLMWDIQQE 612
           +  +  +K   +K + +F   KD L   L P E  D L+LLW+NE R+C LM DIQQ+
Sbjct: 264 SATNRNLKE-HQKLQHQFTSQKDALSSQLLPSEAMDILKLLWKNEARLCSLMSDIQQQ 320


>ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
           gi|355509045|gb|AES90187.1| DNA-directed RNA polymerase
           subunit beta [Medicago truncatula]
          Length = 1628

 Score = 80.5 bits (197), Expect = 4e-13
 Identities = 58/223 (26%), Positives = 100/223 (44%), Gaps = 21/223 (9%)
 Frame = +1

Query: 7   CTHCHHFKLTAEKLNDYADKLDEIRKNN-----------------SVDSKFKSS--SNEE 129
           C  CH+F+ + +++   A +L+ I K N                 SVD     S  S  E
Sbjct: 105 CFSCHYFRASRDEVKRRASQLELILKGNISKAKSLGEIKLNETIDSVDDDDDDSQWSGAE 164

Query: 130 QY--SWTSFQLSEAREILSSMISELKLQKNKCANCGLNTPKVTSPVFGRLHMSELSKKEV 303
           Q   SWTS Q SEA  ++   +++      KC NCG  +PK+T P FGR ++  LS  + 
Sbjct: 165 QLGESWTSLQFSEAMSVIYEFLAK---DYKKCLNCGCISPKITKPTFGRFNVKALSSVQA 221

Query: 304 NANILKGLKSHRGTRRKDHSSEVSANQTMGDNVTDLXXXXXXXXXXXXXLNGADMMVKNL 483
            AN++   K+      ++  +   A  + G+N                      ++   L
Sbjct: 222 RANVISSAKAADVQADEEDITSGGAGNSNGNN---------------------QILSIKL 260

Query: 484 MEKTESKFVKDRLLTPIEIKDHLRLLWENETRICCLMWDIQQE 612
           +E++         L P ++++ ++LLW+NE+R+C  + DIQ +
Sbjct: 261 VEQSSLS----GSLLPSQVQEMIKLLWKNESRLCSHISDIQDQ 299


>ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Citrus
           sinensis]
          Length = 1715

 Score = 79.7 bits (195), Expect = 6e-13
 Identities = 64/242 (26%), Positives = 104/242 (42%), Gaps = 38/242 (15%)
 Frame = +1

Query: 1   QMCTHCHHFKLTAEKLNDYADKLDEIRKNNSVDSKF------KSSSNEEQ---------- 132
           ++C  CHHFK +  ++     KL+ I K + + +K         SSN E           
Sbjct: 102 RICFFCHHFKASRREVEKCVRKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCS 161

Query: 133 ----------------YSWTSFQLSEAREILSSMISELKLQKNKCANCGLNTPKVTSPVF 264
                             WTS Q +EA+    +++  LK++  KC NC    P+++ P F
Sbjct: 162 MVTPRGNYDNVRNLKPQEWTSLQFAEAK---LALLQFLKIETTKCGNCKAKNPRISKPTF 218

Query: 265 GRLHMSELSKKEVNANILKGLKSHR----GTRRKD--HSSEVSANQTMGDNVTDLXXXXX 426
           G +HM+ +   ++ AN+++G         G   KD   SS+V A +T   N T       
Sbjct: 219 GWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGT-FPGTQD 277

Query: 427 XXXXXXXXLNGADMMVKNLMEKTESKFVKDRLLTPIEIKDHLRLLWENETRICCLMWDIQ 606
                    +GA   V +  +K +  F     L P ++KD +  LWENE  +C  + D+Q
Sbjct: 278 TAARRHQKGSGA---VPSGFKKQKDLF--SGPLLPSDVKDIIEKLWENEFELCSFISDMQ 332

Query: 607 QE 612
           Q+
Sbjct: 333 QQ 334


>ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
           max]
          Length = 1651

 Score = 79.0 bits (193), Expect = 1e-12
 Identities = 62/234 (26%), Positives = 99/234 (42%), Gaps = 32/234 (13%)
 Frame = +1

Query: 7   CTHCHHFKLTAEKLNDYADKLDEIRKNNSVDSKFKSS--------------------SNE 126
           C  CHHF+  +++++    +L+ I K + + +K   S                     +E
Sbjct: 104 CFTCHHFRAPSKEVDIRTSQLELIMKGDIIRAKRLESIIPGKSVDSFNPDESIHPGDGDE 163

Query: 127 EQ-YS-------WTSFQLSEAREILSSMISELKLQKNKCANCGLNTPKVTSPVFGRLHMS 282
            Q YS       WTS Q SEA  +L  ++++   +  KC  CG   PK++ P FG  HM+
Sbjct: 164 SQCYSAEQLGENWTSLQFSEAMSVLRKLLTK---KHKKCQKCGAKNPKISKPTFGWFHMN 220

Query: 283 ELSKKEVNANILKGLKSHRGTRRKDHSSEVSANQTMGDNVTDLXXXXXXXXXXXXXLNGA 462
            LS  E  A+ ++ ++S       D  S    + T  +++T                 G 
Sbjct: 221 VLSADETRADTIRSVESE---TTNDDISLGGGDTTDVEDITSA---------------GT 262

Query: 463 DMMVKNLMEKTESKFVKDRLLT----PIEIKDHLRLLWENETRICCLMWDIQQE 612
               K   EK   K  +   L+    P ++K  L LLWENE R+C  + DIQ +
Sbjct: 263 AKRDKRKKEKLSYKLAEQNKLSGSLLPSQVKGILELLWENEARLCSYINDIQDQ 316


>ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citrus clementina]
           gi|557523327|gb|ESR34694.1| hypothetical protein
           CICLE_v10004132mg [Citrus clementina]
          Length = 1715

 Score = 77.8 bits (190), Expect = 2e-12
 Identities = 63/242 (26%), Positives = 103/242 (42%), Gaps = 38/242 (15%)
 Frame = +1

Query: 1   QMCTHCHHFKLTAEKLNDYADKLDEIRKNNSVDSKF------KSSSNEEQ---------- 132
           ++C  CHHFK +  ++     KL+ I K + + +K         SSN E           
Sbjct: 102 RICFFCHHFKASRREVEKCVRKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCS 161

Query: 133 ----------------YSWTSFQLSEAREILSSMISELKLQKNKCANCGLNTPKVTSPVF 264
                             WTS Q +EA+    +++  LK++  KC NC    P+++ P F
Sbjct: 162 MVTPRGNYDNVRNLKPQEWTSLQFAEAK---LALLQFLKIETTKCGNCKAKNPRISKPTF 218

Query: 265 GRLHMSELSKKEVNANILKGLKSHR----GTRRKD--HSSEVSANQTMGDNVTDLXXXXX 426
           G +HM+ +   ++ AN+++G         G   KD   SS+V A +T   N         
Sbjct: 219 GWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGTSSDVDAPETHSFNGA-FPGTQD 277

Query: 427 XXXXXXXXLNGADMMVKNLMEKTESKFVKDRLLTPIEIKDHLRLLWENETRICCLMWDIQ 606
                    +GA   V +  +K +  F     L P ++KD +  LWENE  +C  + D+Q
Sbjct: 278 TAARRHQKGSGA---VPSGFKKQKDLF--SGPLLPSDVKDIIEKLWENEFELCSFISDMQ 332

Query: 607 QE 612
           Q+
Sbjct: 333 QQ 334


>ref|XP_002440173.1| hypothetical protein SORBIDRAFT_09g027223 [Sorghum bicolor]
           gi|241945458|gb|EES18603.1| hypothetical protein
           SORBIDRAFT_09g027223 [Sorghum bicolor]
          Length = 799

 Score = 77.8 bits (190), Expect = 2e-12
 Identities = 60/225 (26%), Positives = 101/225 (44%), Gaps = 24/225 (10%)
 Frame = +1

Query: 7   CTHCHHFKLTAEKLNDYADKLDEIRKNNSVDSKF------------------------KS 114
           C +CH F+L  E+++ Y ++L+ + K + V +K                         KS
Sbjct: 106 CFYCHKFRLNKEQVDRYVNELELLVKGDIVGAKNLEDSVKEAYLSEEDENITETTSGDKS 165

Query: 115 SSNEEQYSWTSFQLSEAREILSSMISELKLQKNKCANCGLNTPKVTSPVFGRLHMSELSK 294
           SS ++  +WTS QL E   I S +   +K ++ KCA C + +P ++SP+FG L + + S 
Sbjct: 166 SSVKDNKTWTSVQLKEVLSIFSKI---MKKRQTKCAKCDMKSPTISSPIFGWL-VKDTSA 221

Query: 295 KEVNANILKGLKSHRGTRRKDHSSEVSANQTMGDNVTDLXXXXXXXXXXXXXLNGADMMV 474
             V AN +   K  +G     +S +   +  + +  T               L  +D  V
Sbjct: 222 SAVRANAIADFKL-KGDGDAHNSGDTGVS-GLDEETTSPGMVSKGSINEVRRL--SDDAV 277

Query: 475 KNLMEKTESKFVKDRLLTPIEIKDHLRLLWENETRICCLMWDIQQ 609
           K ++  +  K      L P E++  L+ LW NE R C L+ D Q+
Sbjct: 278 KEMVASSGKKH-----LLPTEVESILKDLWNNEARFCMLLCDFQK 317


>ref|XP_003559192.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like
           [Brachypodium distachyon]
          Length = 1868

 Score = 77.0 bits (188), Expect = 4e-12
 Identities = 60/227 (26%), Positives = 96/227 (42%), Gaps = 26/227 (11%)
 Frame = +1

Query: 7   CTHCHHFKLTAEKLND---YADKLD-----------------------EIRKNNSVDSKF 108
           C  CH F+L +E+++    Y  +L+                       E+ +++SVD   
Sbjct: 332 CFSCHRFRLHSEQVSPVRRYTRELELVARGDVARAKNLQDSGVAEEDVEMDEDSSVDQS- 390

Query: 109 KSSSNEEQYSWTSFQLSEAREILSSMISELKLQKNKCANCGLNTPKVTSPVFGRLHMSEL 288
            S S+ E  +WTS QL EA  I+  +   LK Q  KCANC + +PKVT  +FG L + + 
Sbjct: 391 -SPSDRENKTWTSIQLKEAHAIIFKL---LKKQVKKCANCDMRSPKVTCQIFGWLKIQDT 446

Query: 289 SKKEVNANILKGLKSHRGTRRKDHSSEVSANQTMGDNVTDLXXXXXXXXXXXXXLNGADM 468
               V    +        + R  H S  +    + D++                + G+  
Sbjct: 447 KGSSVRRKAITDFNLEGDSHR--HDSSENGVSGLSDDI----------------IKGSSN 488

Query: 469 MVKNLMEKTESKFVKDRLLTPIEIKDHLRLLWENETRICCLMWDIQQ 609
            +  L +      +K+  L   E++  L+ LWENE R C L+ D QQ
Sbjct: 489 QITGLSDDR----IKEIPLLATEVESILKDLWENEARFCMLLCDFQQ 531


>ref|XP_002981487.1| hypothetical protein SELMODRAFT_233747 [Selaginella moellendorffii]
           gi|300150653|gb|EFJ17302.1| hypothetical protein
           SELMODRAFT_233747 [Selaginella moellendorffii]
          Length = 1578

 Score = 76.6 bits (187), Expect = 5e-12
 Identities = 51/198 (25%), Positives = 85/198 (42%)
 Frame = +1

Query: 4   MCTHCHHFKLTAEKLNDYADKLDEIRKNNSVDSKFKSSSNEEQYSWTSFQLSEAREILSS 183
           +C  CHHFK   +K+ D    L +I K + V++     S   +   TS    + ++I+  
Sbjct: 99  VCVFCHHFKHERKKVEDACIALTQIMKESVVENP----SGGRKMLITSGHFIQVKKIIED 154

Query: 184 MISELKLQKNKCANCGLNTPKVTSPVFGRLHMSELSKKEVNANILKGLKSHRGTRRKDHS 363
                KL + KC++CG   P + S   G+L    LS + ++AN++ G    R       +
Sbjct: 155 FF---KLPRTKCSSCGGQVPALRSEGHGKLFQQPLSSRHMSANMVSG-HIFRDQNAAAAA 210

Query: 364 SEVSANQTMGDNVTDLXXXXXXXXXXXXXLNGADMMVKNLMEKTESKFVKDRLLTPIEIK 543
            + S  ++ G                      AD   KN   +    F   ++L P E++
Sbjct: 211 MDASVPESKGKRPK------------------ADKFAKNSSIQAVGYFSAPKILLPSEVR 252

Query: 544 DHLRLLWENETRICCLMW 597
            HL  LW NE ++C L+W
Sbjct: 253 KHLSALWRNEEKLCSLIW 270


>tpg|DAA45226.1| TPA: putative DNA-directed RNA polymerase family protein [Zea mays]
          Length = 548

 Score = 75.9 bits (185), Expect = 9e-12
 Identities = 59/225 (26%), Positives = 95/225 (42%), Gaps = 24/225 (10%)
 Frame = +1

Query: 7   CTHCHHFKLTAEKLNDYADKLDEIRKNNSVDSKFKSSSNEEQY----------------- 135
           C HCH F+L  E+++ Y ++L+ + K + V +K    S EE Y                 
Sbjct: 106 CFHCHKFRLNKEQVDRYVNELELLVKGDIVCAKNLEDSVEEAYLSKEDENMNKTTSGDNS 165

Query: 136 -------SWTSFQLSEAREILSSMISELKLQKNKCANCGLNTPKVTSPVFGRLHMSELSK 294
                  +WTS QL E   I S +   +K ++ KCA C + +P ++SP+FG L + +   
Sbjct: 166 SSVKDKKTWTSIQLKEVLSIFSKI---MKKRQKKCAKCDMKSPTISSPIFGWL-VKDTKA 221

Query: 295 KEVNANILKGLKSHRGTRRKDHSSEVSANQTMGDNVTDLXXXXXXXXXXXXXLNGADMMV 474
             V  N +   K  +G     +S E   +   G                      +D  +
Sbjct: 222 SAVRTNAIADFKL-KGDGDIHNSGETGVS---GLEEESSSPGMVSKDSINEVRGLSDDTI 277

Query: 475 KNLMEKTESKFVKDRLLTPIEIKDHLRLLWENETRICCLMWDIQQ 609
           K L+  +  K      L P E++  L+ LW+NE R C L+ D Q+
Sbjct: 278 KELVASSGKKH-----LLPTEVESILKDLWKNEARFCMLLCDFQK 317


>ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
           lycopersicum]
          Length = 1677

 Score = 75.5 bits (184), Expect = 1e-11
 Identities = 56/240 (23%), Positives = 96/240 (40%), Gaps = 35/240 (14%)
 Frame = +1

Query: 7   CTHCHHFKLTAEKLNDYADKLDEIRKNNSVDSKF-------KSSSNEEQY---------- 135
           C +C HF+ +  ++     +L+ I K + V +K         S+  EE            
Sbjct: 99  CFYCFHFRASRAEVEKCVSELELIAKGDVVGAKMIDALSPDNSTDREESEGSHMSCTMDD 158

Query: 136 -------------SWTSFQLSEAREILSSMISELKLQKNKCANCGLNTPKVTSPVFGRLH 276
                        SW +FQ +EA  ++  +   LK +  KC+NC    PK+  P FGR H
Sbjct: 159 LNVRDHCEYNKRPSWDNFQFTEAMAVIDRI---LKTKTEKCSNCKAKNPKIRKPSFGRFH 215

Query: 277 MSELSKKEVNANILK-----GLKSHRGTRRKDHSSEVSANQTMGDNVTDLXXXXXXXXXX 441
           M ++S K++  N +       L    G+        V+A + +G+  T L          
Sbjct: 216 M-DISNKQIRENYINSGRRFNLHDTGGSEENPSPEVVNATEPLGEAETSLCVTSTDGVEN 274

Query: 442 XXXLNGADMMVKNLMEKTESKFVKDRLLTPIEIKDHLRLLWENETRICCLMWDIQQEKKN 621
                       +++E+ +  F    L  P +++  +  LWENE  +C    DIQ + +N
Sbjct: 275 SKGRKRQGGDQSDVVEQQKDSFSVAHL--PSQVRSIIEHLWENEAPLCTFFCDIQSQHRN 332


>ref|XP_006656244.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Oryza
           brachyantha]
          Length = 1755

 Score = 75.1 bits (183), Expect = 2e-11
 Identities = 57/228 (25%), Positives = 99/228 (43%), Gaps = 23/228 (10%)
 Frame = +1

Query: 7   CTHCHHFKLTAEKLNDYADKLDEIRKNNSV----------------DSKFKSSSNE---- 126
           C HCH F+L  E+++ Y D+L+ + K +                  D K +++S +    
Sbjct: 105 CFHCHKFRLNREQVDRYTDELELLVKGDIAHAKNLEDSGGKVLLEEDDKTEATSGDKSTC 164

Query: 127 ---EQYSWTSFQLSEAREILSSMISELKLQKNKCANCGLNTPKVTSPVFGRLHMSELSKK 297
              E  +WTS QL   +E+LS   + +K ++ KC +C    PK++ P++G L + +    
Sbjct: 165 SESENKTWTSIQL---KEVLSIFANFMKKRQKKCTHCNKKNPKISHPIYGWL-IKDADIS 220

Query: 298 EVNANILKGLKSHRGTRRKDHSSEVSANQTMGDNVTDLXXXXXXXXXXXXXLNGADMMVK 477
            V AN +   K     R   H S  +    + + +T               +  +D  +K
Sbjct: 221 AVRANAIADAKLSGDVR--FHDSRETGVSGLDEELTSPGTSSRGSTNETRRI--SDDTIK 276

Query: 478 NLMEKTESKFVKDRLLTPIEIKDHLRLLWENETRICCLMWDIQQEKKN 621
            ++  +  K      L   E++  L+ LW+NE R C L+ D QQ   N
Sbjct: 277 EMVASSGKKH-----LLATEVESILKDLWKNEARFCMLLCDFQQNTLN 319


>ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I
           subunit RPA1-like [Cucumis sativus]
          Length = 1652

 Score = 75.1 bits (183), Expect = 2e-11
 Identities = 60/222 (27%), Positives = 94/222 (42%), Gaps = 20/222 (9%)
 Frame = +1

Query: 7   CTHCHHFKLTAEKLNDYADKLD-----EIRKNNSVD-----SKFKSSSNEEQYS------ 138
           C  CHHF+     + +    L+     EI K   ++     SK ++ S+   Y+      
Sbjct: 110 CFSCHHFRAGESMVENCKTLLELILDGEIAKAKELEEEWMNSKSRTKSSHSMYTYERKNG 169

Query: 139 ----WTSFQLSEAREILSSMISELKLQKNKCANCGLNTPKVTSPVFGRLHMSELSKKEVN 306
               WTS Q SEA  +++     LK +++ C  CG  +PK+T P FG  HM  L+  +  
Sbjct: 170 QPETWTSLQFSEAISVVTKF---LKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKR 226

Query: 307 ANILKGLKSHRGTRRKDHSSEVSANQTMGDNVTDLXXXXXXXXXXXXXLNGADMMVKNLM 486
           AN ++  K    +   +  S +    T    V D                  D+  +  M
Sbjct: 227 ANAIRRSKPVSVSSGAEGVSSLEEETTTEATVEDF----------------EDVSPEVFM 270

Query: 487 EKTESKFVKDRLLTPIEIKDHLRLLWENETRICCLMWDIQQE 612
           +K    F    LL P E+KD L+ LW+NE  +C  + DI Q+
Sbjct: 271 QK---NFSSGHLL-PSEVKDILKRLWKNEALLCSFISDISQQ 308