BLASTX nr result
ID: Ephedra25_contig00011836
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra25_contig00011836
(1179 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAX19931.1| viral replicase [Nandina mosaic virus] 769 0.0
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ... 753 0.0
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ... 752 0.0
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ... 752 0.0
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ... 752 0.0
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ... 752 0.0
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ... 752 0.0
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ... 752 0.0
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a... 744 0.0
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1... 664 0.0
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi... 618 e-174
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo... 460 e-127
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2... 435 e-119
gb|ACS28228.1| replicase [Alternanthera mosaic virus] 419 e-115
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai... 419 e-114
gb|ACS28233.1| replicase [Alternanthera mosaic virus] 417 e-114
ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082... 416 e-114
ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548... 414 e-113
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A... 407 e-111
ref|NP_077079.1| replicase [Clover yellow mosaic virus] 400 e-109
>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
Length = 1368
Score = 770 bits (1987), Expect = 0.0
Identities = 370/392 (94%), Positives = 385/392 (98%)
Frame = -3
Query: 1177 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 998
YRTLKRELAQTRH+NPFAQ+P+AADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH
Sbjct: 25 YRTLKRELAQTRHTNPFAQSPDAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 84
Query: 997 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNI 818
YLPKENPVSFLFMKPAKLR+FHRGPTHGDFFLNAHVEPKDVPRYPQDTV++RLENI T+I
Sbjct: 85 YLPKENPVSFLFMKPAKLRYFHRGPTHGDFFLNAHVEPKDVPRYPQDTVLNRLENISTSI 144
Query: 817 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 638
AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM
Sbjct: 145 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 204
Query: 637 YIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPER 458
YIPGGHAGASYFHKYDQLEWLT+GHL A NQPT+TAQRLETKGANHLFIFQRGNYLTPER
Sbjct: 205 YIPGGHAGASYFHKYDQLEWLTIGHLQAPNQPTVTAQRLETKGANHLFIFQRGNYLTPER 264
Query: 457 RTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 278
RTFTTT+ YVTVPDIFLPE+YNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST
Sbjct: 265 RTFTTTDPYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 324
Query: 277 KELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGR 98
KELQHYQPSEITLLVNYFEF ASLDSHTCFEDVLSGNL+QRLLRPLR+D+QR+L FFRGR
Sbjct: 325 KELQHYQPSEITLLVNYFEFAASLDSHTCFEDVLSGNLLQRLLRPLRADMQRILHFFRGR 384
Query: 97 PSFVKLIKALDWQPITLEFPVRTVNTRLRGPP 2
PSFVKLIKALDWQPITLEFPVR VNTRLRGPP
Sbjct: 385 PSFVKLIKALDWQPITLEFPVRRVNTRLRGPP 416
>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 753 bits (1944), Expect = 0.0
Identities = 364/392 (92%), Positives = 376/392 (95%)
Frame = -3
Query: 1177 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 998
YR LKRELAQTRH+NPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH
Sbjct: 25 YRHLKRELAQTRHNNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 84
Query: 997 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNI 818
YLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+I
Sbjct: 85 YLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSI 144
Query: 817 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 638
AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM
Sbjct: 145 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 204
Query: 637 YIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPER 458
YIPGGHAGASYFHKY QLEWLTVGHLT Q T+TAQRLETKGANHLFIFQRGNYLTPER
Sbjct: 205 YIPGGHAGASYFHKYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPER 264
Query: 457 RTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 278
RTFTTTEHYVTVPD+FLP +YNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST
Sbjct: 265 RTFTTTEHYVTVPDVFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 324
Query: 277 KELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGR 98
KELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPL+S I ++L FFRGR
Sbjct: 325 KELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLKSGITQLLNFFRGR 384
Query: 97 PSFVKLIKALDWQPITLEFPVRTVNTRLRGPP 2
PSFVKLIKALDWQPITLEFPVR VNT LRG P
Sbjct: 385 PSFVKLIKALDWQPITLEFPVRKVNTHLRGAP 416
>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 752 bits (1941), Expect = 0.0
Identities = 364/392 (92%), Positives = 375/392 (95%)
Frame = -3
Query: 1177 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 998
YR LKRELAQTRH+NPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH
Sbjct: 25 YRHLKRELAQTRHNNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 84
Query: 997 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNI 818
YLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+I
Sbjct: 85 YLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSI 144
Query: 817 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 638
AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM
Sbjct: 145 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 204
Query: 637 YIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPER 458
YIPGGHAGASYFH Y QLEWLTVGHLT Q T+TAQRLETKGANHLFIFQRGNYLTPER
Sbjct: 205 YIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPER 264
Query: 457 RTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 278
RTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST
Sbjct: 265 RTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 324
Query: 277 KELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGR 98
KELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGR
Sbjct: 325 KELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGR 384
Query: 97 PSFVKLIKALDWQPITLEFPVRTVNTRLRGPP 2
PSFVKLIKALDWQPITLEFPVR VNT LRG P
Sbjct: 385 PSFVKLIKALDWQPITLEFPVRKVNTHLRGAP 416
>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 752 bits (1941), Expect = 0.0
Identities = 364/392 (92%), Positives = 375/392 (95%)
Frame = -3
Query: 1177 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 998
YR LKRELAQTRH+NPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH
Sbjct: 25 YRHLKRELAQTRHNNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 84
Query: 997 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNI 818
YLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+I
Sbjct: 85 YLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSI 144
Query: 817 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 638
AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM
Sbjct: 145 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 204
Query: 637 YIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPER 458
YIPGGHAGASYFH Y QLEWLTVGHLT Q T+TAQRLETKGANHLFIFQRGNYLTPER
Sbjct: 205 YIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPER 264
Query: 457 RTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 278
RTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST
Sbjct: 265 RTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 324
Query: 277 KELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGR 98
KELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGR
Sbjct: 325 KELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGR 384
Query: 97 PSFVKLIKALDWQPITLEFPVRTVNTRLRGPP 2
PSFVKLIKALDWQPITLEFPVR VNT LRG P
Sbjct: 385 PSFVKLIKALDWQPITLEFPVRKVNTHLRGAP 416
>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 752 bits (1941), Expect = 0.0
Identities = 364/392 (92%), Positives = 375/392 (95%)
Frame = -3
Query: 1177 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 998
YR LKRELAQTRH+NPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH
Sbjct: 25 YRHLKRELAQTRHNNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 84
Query: 997 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNI 818
YLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+I
Sbjct: 85 YLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSI 144
Query: 817 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 638
AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM
Sbjct: 145 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 204
Query: 637 YIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPER 458
YIPGGHAGASYFH Y QLEWLTVGHLT Q T+TAQRLETKGANHLFIFQRGNYLTPER
Sbjct: 205 YIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPER 264
Query: 457 RTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 278
RTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST
Sbjct: 265 RTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 324
Query: 277 KELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGR 98
KELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGR
Sbjct: 325 KELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGR 384
Query: 97 PSFVKLIKALDWQPITLEFPVRTVNTRLRGPP 2
PSFVKLIKALDWQPITLEFPVR VNT LRG P
Sbjct: 385 PSFVKLIKALDWQPITLEFPVRKVNTHLRGAP 416
>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 752 bits (1941), Expect = 0.0
Identities = 364/392 (92%), Positives = 375/392 (95%)
Frame = -3
Query: 1177 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 998
YR LKRELAQTRH+NPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH
Sbjct: 25 YRHLKRELAQTRHNNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 84
Query: 997 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNI 818
YLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+I
Sbjct: 85 YLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSI 144
Query: 817 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 638
AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM
Sbjct: 145 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 204
Query: 637 YIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPER 458
YIPGGHAGASYFH Y QLEWLTVGHLT Q T+TAQRLETKGANHLFIFQRGNYLTPER
Sbjct: 205 YIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPER 264
Query: 457 RTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 278
RTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST
Sbjct: 265 RTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 324
Query: 277 KELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGR 98
KELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGR
Sbjct: 325 KELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGR 384
Query: 97 PSFVKLIKALDWQPITLEFPVRTVNTRLRGPP 2
PSFVKLIKALDWQPITLEFPVR VNT LRG P
Sbjct: 385 PSFVKLIKALDWQPITLEFPVRKVNTHLRGAP 416
>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 752 bits (1941), Expect = 0.0
Identities = 364/392 (92%), Positives = 375/392 (95%)
Frame = -3
Query: 1177 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 998
YR LKRELAQTRH+NPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH
Sbjct: 25 YRHLKRELAQTRHNNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 84
Query: 997 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNI 818
YLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+I
Sbjct: 85 YLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSI 144
Query: 817 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 638
AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM
Sbjct: 145 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 204
Query: 637 YIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPER 458
YIPGGHAGASYFH Y QLEWLTVGHLT Q T+TAQRLETKGANHLFIFQRGNYLTPER
Sbjct: 205 YIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPER 264
Query: 457 RTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 278
RTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST
Sbjct: 265 RTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 324
Query: 277 KELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGR 98
KELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGR
Sbjct: 325 KELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGR 384
Query: 97 PSFVKLIKALDWQPITLEFPVRTVNTRLRGPP 2
PSFVKLIKALDWQPITLEFPVR VNT LRG P
Sbjct: 385 PSFVKLIKALDWQPITLEFPVRKVNTHLRGAP 416
>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 752 bits (1941), Expect = 0.0
Identities = 364/392 (92%), Positives = 375/392 (95%)
Frame = -3
Query: 1177 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 998
YR LKRELAQTRH+NPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH
Sbjct: 25 YRHLKRELAQTRHNNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 84
Query: 997 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNI 818
YLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+I
Sbjct: 85 YLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSI 144
Query: 817 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 638
AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM
Sbjct: 145 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 204
Query: 637 YIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPER 458
YIPGGHAGASYFH Y QLEWLTVGHLT Q T+TAQRLETKGANHLFIFQRGNYLTPER
Sbjct: 205 YIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPER 264
Query: 457 RTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 278
RTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST
Sbjct: 265 RTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 324
Query: 277 KELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGR 98
KELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGR
Sbjct: 325 KELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGR 384
Query: 97 PSFVKLIKALDWQPITLEFPVRTVNTRLRGPP 2
PSFVKLIKALDWQPITLEFPVR VNT LRG P
Sbjct: 385 PSFVKLIKALDWQPITLEFPVRKVNTHLRGAP 416
>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
virus]
Length = 669
Score = 744 bits (1922), Expect = 0.0
Identities = 360/392 (91%), Positives = 374/392 (95%)
Frame = -3
Query: 1177 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 998
YR LKRELAQTRH+NPFAQ+PEAADALE LGINSHPYAITPHTHAAAKAIESDLYEVVSH
Sbjct: 25 YRHLKRELAQTRHNNPFAQSPEAADALEVLGINSHPYAITPHTHAAAKAIESDLYEVVSH 84
Query: 997 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNI 818
YLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQ+T+I RLENIPTNI
Sbjct: 85 YLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQETIIKRLENIPTNI 144
Query: 817 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 638
AF+GDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL+PQIYTLTYSEDGFM
Sbjct: 145 AFIGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLHPQIYTLTYSEDGFM 204
Query: 637 YIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPER 458
YIPGGHAGASYFHKY QLEWLTVGHLTA T+TAQRLETKGANHLFIFQRGNYLTPER
Sbjct: 205 YIPGGHAGASYFHKYSQLEWLTVGHLTAPGLLTVTAQRLETKGANHLFIFQRGNYLTPER 264
Query: 457 RTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 278
RTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST
Sbjct: 265 RTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 324
Query: 277 KELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGR 98
KELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPL S ++L FFRGR
Sbjct: 325 KELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRILRPLTSGATQILNFFRGR 384
Query: 97 PSFVKLIKALDWQPITLEFPVRTVNTRLRGPP 2
PSFVKLI+ALDWQPITLEFPVR VNT LRGPP
Sbjct: 385 PSFVKLIQALDWQPITLEFPVRKVNTLLRGPP 416
>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
replication protein; AltName: Full=156 kDa protein;
AltName: Full=ORF1 protein; Includes: RecName:
Full=RNA-directed RNA polymerase; Includes: RecName:
Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
[Plantago asiatica mosaic virus]
Length = 1385
Score = 664 bits (1714), Expect = 0.0
Identities = 329/392 (83%), Positives = 347/392 (88%)
Frame = -3
Query: 1177 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 998
YR LKRELAQTRH+NPFAQ+PEAADALEALGINSHPYAIT HTHAAAKAIESDLYEVVSH
Sbjct: 25 YRVLKRELAQTRHTNPFAQSPEAADALEALGINSHPYAITSHTHAAAKAIESDLYEVVSH 84
Query: 997 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNI 818
YLPKENPVSFLFMKPAKLRFFHRGPTHGD FLNAHVEPKDVPRYPQ+T+I+RL +IPT I
Sbjct: 85 YLPKENPVSFLFMKPAKLRFFHRGPTHGDHFLNAHVEPKDVPRYPQETIINRLADIPTQI 144
Query: 817 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 638
AFMGDTLHFLSPSF+TALFAHSP+LQTLYATLVLPPE RSLYPQIYTLTYSEDGFM
Sbjct: 145 AFMGDTLHFLSPSFLTALFAHSPRLQTLYATLVLPPEPSTS-RSLYPQIYTLTYSEDGFM 203
Query: 637 YIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPER 458
YIPGGHAGASYFHKYDQLEWLTVGHLTA PT+TAQRLETKGANHLFIFQRGNY+TPER
Sbjct: 204 YIPGGHAGASYFHKYDQLEWLTVGHLTAPGCPTVTAQRLETKGANHLFIFQRGNYITPER 263
Query: 457 RTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 278
RTF T + YVTVP IFLPE YNCRTPISKT MMQMFFYIKS KEA+ + +QLIST
Sbjct: 264 RTFATNDQYVTVPHIFLPENYNCRTPISKTTMMQMFFYIKSGKEAQREGHLGQVQQLIST 323
Query: 277 KELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGR 98
KELQHYQPSEITLLVNYFEFTA+LDSHTCFEDV L + I R+LQFFRGR
Sbjct: 324 KELQHYQPSEITLLVNYFEFTATLDSHTCFEDV-PPKLAPKTTPAPPLGISRILQFFRGR 382
Query: 97 PSFVKLIKALDWQPITLEFPVRTVNTRLRGPP 2
PSFVKLIKALDWQPITLEFPVR V T +RGPP
Sbjct: 383 PSFVKLIKALDWQPITLEFPVRDVRTTVRGPP 414
>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
[Tulip virus X]
Length = 1361
Score = 618 bits (1594), Expect = e-174
Identities = 294/392 (75%), Positives = 333/392 (84%)
Frame = -3
Query: 1177 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 998
YR +K+EL TRHSNPFAQ+P AAD LE LGINSHP AITPHTHAAAKAIESDLYEV SH
Sbjct: 25 YRVMKKELTATRHSNPFAQSPAAADTLELLGINSHPLAITPHTHAAAKAIESDLYEVTSH 84
Query: 997 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNI 818
YLPKENPV+FLFMKP+KLR+FHRGP H D FLNA++EPKDVPRYP DTVI + I T +
Sbjct: 85 YLPKENPVTFLFMKPSKLRYFHRGPQHSDIFLNAYIEPKDVPRYPTDTVIENISEITTPL 144
Query: 817 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 638
AFMGDTLHFL PSF+T+LFA SPKLQTLYAT+VLPPEALYRLRSLYP++YTLTYS+DGFM
Sbjct: 145 AFMGDTLHFLEPSFITSLFARSPKLQTLYATMVLPPEALYRLRSLYPEVYTLTYSDDGFM 204
Query: 637 YIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPER 458
YIPGGHAGASY+HKYDQL+WLT G+L + T+TAQRLETKGANHLFIFQRG YLTPER
Sbjct: 205 YIPGGHAGASYYHKYDQLQWLTAGYL-ISESTTVTAQRLETKGANHLFIFQRGRYLTPER 263
Query: 457 RTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 278
RTFTT YVTVP+IFLP N RTPI+KT+ MQ+FFYIKSVKE +ERD+WAKFRQLIST
Sbjct: 264 RTFTTATSYVTVPEIFLPSSANARTPITKTLAMQIFFYIKSVKECRERDLWAKFRQLIST 323
Query: 277 KELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGR 98
KELQH+QP E TLLVNYF+F A+LDS TC ED+LSG+L+ RLLRP R + Q +++FF+G
Sbjct: 324 KELQHFQPDEATLLVNYFDFVANLDSATCHEDILSGSLLTRLLRPARVNWQALVRFFKGS 383
Query: 97 PSFVKLIKALDWQPITLEFPVRTVNTRLRGPP 2
P KLIKAL WQP+ LEF V TV R PP
Sbjct: 384 PDHTKLIKALQWQPVLLEFKVSTVLVHKRTPP 415
>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
RNA polymerase [Cassava common mosaic virus]
gi|1587823|prf||2207297A ORF 1
Length = 1449
Score = 460 bits (1184), Expect = e-127
Identities = 223/396 (56%), Positives = 283/396 (71%), Gaps = 12/396 (3%)
Frame = -3
Query: 1177 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 998
YRT+K EL Q + NP+AQT EAAD LE LG+ +HPYAI HTHAA KA+E DLY VSH
Sbjct: 25 YRTIKAELNQAKIINPYAQTGEAADLLETLGVITHPYAIATHTHAAGKALELDLYHSVSH 84
Query: 997 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNI 818
YLP+++PV+F+FMKPAKL++ RGP H D F+N+ VEPKD+ RYP+ TV+ + I T+I
Sbjct: 85 YLPRKSPVTFMFMKPAKLQYLRRGPQHRDHFVNSWVEPKDLARYPEQTVVDGIPPIQTSI 144
Query: 817 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 638
AFMGDTLHFL+P FV LFA SPKL+T YAT+VLPPEAL+++ SLYPQIYTL Y E GF+
Sbjct: 145 AFMGDTLHFLTPKFVGTLFARSPKLKTFYATMVLPPEALHKMNSLYPQIYTLQYKEKGFI 204
Query: 637 YIPGGHAGASYFHKYDQLEWLTVGHLT--AANQP----------TITAQRLETKGANHLF 494
Y PGGHAGASY+H+Y QL WL VG + N P +TAQR+ETKGANHLF
Sbjct: 205 YTPGGHAGASYYHEYSQLGWLDVGLIEYFEENAPDGSEYLGTKWAVTAQRIETKGANHLF 264
Query: 493 IFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKER 314
+FQRG TP+ R+ T Y+TVP +FLP+++N R P+ KTI QMF YIKSVK+ ER
Sbjct: 265 VFQRGRLQTPQMRSIATNTQYITVPAVFLPKKFNSRQPLKKTIAQQMFLYIKSVKQVTER 324
Query: 313 DIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRS 134
DI++K RQLI T ELQ Y P E+ LL NYF + L S E+VL+G+L ++L RP++S
Sbjct: 325 DIYSKLRQLIKTSELQEYSPDELVLLANYFMLISELSSKASAEEVLAGSLFKKLFRPIKS 384
Query: 133 DIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTV 26
+ + G+P F +L++AL W + L PVR V
Sbjct: 385 KVTAFIHKLFGQPEFAQLLEALLWTNVDLILPVRYV 420
>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
RecName: Full=RNA replication protein; AltName: Full=176
kDa protein; AltName: Full=ORF1 protein; Includes:
RecName: Full=RNA-directed RNA polymerase; Includes:
RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
protein product [Papaya mosaic virus]
gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
virus]
Length = 1547
Score = 435 bits (1118), Expect = e-119
Identities = 215/395 (54%), Positives = 280/395 (70%), Gaps = 8/395 (2%)
Frame = -3
Query: 1177 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 998
YR +K + +T+ NP+A AD+LE LGI ++P+A+ HTHAAAK IE D+Y++VS
Sbjct: 25 YRDIKLTIKETKTYNPYAHPVAVADSLEKLGIETNPFAVKAHTHAAAKTIELDMYKIVSF 84
Query: 997 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISR--LENIPT 824
YLPKENP +F+FMK +KL++F RGP D FLNAH+EPKDV RY DT+ + I T
Sbjct: 85 YLPKENPTTFMFMKRSKLQYFRRGPQQKDVFLNAHIEPKDVARYDVDTLFDKNVTPQITT 144
Query: 823 NIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDG 644
N AFMGDTLHFL + + +F SPKLQTLYAT+VLPPEAL+RL SL+P IY L + ++
Sbjct: 145 NTAFMGDTLHFLPLTAIERIFKSSPKLQTLYATMVLPPEALHRLHSLHPGIYELEFHQEH 204
Query: 643 FMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQP----TITAQRLETKGANHLFIFQRGN 476
F+Y PGGHAGA+Y HKY+QLEW+ VG A++ +T+Q LETKGANHLFIFQRG
Sbjct: 205 FIYKPGGHAGAAYIHKYEQLEWIKVGRFKWADEKGLTHMVTSQILETKGANHLFIFQRGR 264
Query: 475 YLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKF 296
+LTPE R F+T YVT+P IFLP+++N R PI KT Q+F Y+KSVK ERDIWAK
Sbjct: 265 FLTPELRCFSTETKYVTMPPIFLPKQFNARLPIKKTTAQQLFLYVKSVKNVTERDIWAKM 324
Query: 295 RQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRS--DIQR 122
RQL+ T ELQ Y P E+TLLVNYF A L S TCF++VLSG + ++L +P + +IQ+
Sbjct: 325 RQLLKTSELQDYNPREVTLLVNYFLLIARLRSETCFDNVLSGGMFKKLFKPFIAWWEIQK 384
Query: 121 VLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR 17
F G F +L++AL+W +TL +P +T + R
Sbjct: 385 HKIF--GNEEFEQLMEALEWVDVTLTYPTKTFDNR 417
>gb|ACS28228.1| replicase [Alternanthera mosaic virus]
Length = 1541
Score = 419 bits (1078), Expect = e-115
Identities = 201/389 (51%), Positives = 274/389 (70%), Gaps = 6/389 (1%)
Frame = -3
Query: 1177 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 998
YR +K+ +A+T+ NP+AQ P AAD+LE LGI S+P+++ HTHAAAK+IE D+Y++ +
Sbjct: 25 YREIKKTIAETKQYNPYAQDPAAADSLEKLGIESNPFSVRAHTHAAAKSIELDMYKITGY 84
Query: 997 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVI--SRLENIPT 824
LPKENP++FLFMK +KL++FHRGP HGD FLNA +EPKDV RY + + S I T
Sbjct: 85 SLPKENPITFLFMKRSKLQYFHRGPQHGDLFLNACIEPKDVTRYALEDLFKPSTTPEIQT 144
Query: 823 NIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDG 644
+AF+GDTLHFL + +F S KLQTLYAT+VLPPEA++R+ S++P IY L + E
Sbjct: 145 RVAFIGDTLHFLPLGAIREIFTSSQKLQTLYATMVLPPEAMHRMHSIHPSIYELEFHEKN 204
Query: 643 FMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPT----ITAQRLETKGANHLFIFQRGN 476
F+Y PGGHAGASY H+Y QL+WL VG ++ +T+Q LETKGANHLF+FQRGN
Sbjct: 205 FIYKPGGHAGASYCHEYSQLQWLKVGKFEWCDKKYQKHYVTSQILETKGANHLFVFQRGN 264
Query: 475 YLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKF 296
+ TP RTF +VT+P IFLP++YN R PI KT+ Q+F YIKSVK ERDIWAK
Sbjct: 265 FATPTYRTFGVETKFVTLPPIFLPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDIWAKV 324
Query: 295 RQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVL 116
RQ+I T ELQ Y E+ L+VNY+ + LDS TCF++VL+G ++++L +P+ +
Sbjct: 325 RQIIKTAELQSYSAKELALIVNYYLLISKLDSVTCFDNVLTGGVLKKLFKPIVAWWSTFK 384
Query: 115 QFFRGRPSFVKLIKALDWQPITLEFPVRT 29
G+ F +L++AL+W ++L + V T
Sbjct: 385 GKIFGKEEFEQLMEALEWVDVSLSYKVET 413
>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
Length = 1541
Score = 419 bits (1076), Expect = e-114
Identities = 201/389 (51%), Positives = 274/389 (70%), Gaps = 6/389 (1%)
Frame = -3
Query: 1177 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 998
YR +K+ +A+T+ NP+AQ P AAD+LE LGI S+P+++ HTHAAAK+IE D+Y++ +
Sbjct: 25 YREIKKTIAETKQYNPYAQDPAAADSLEKLGIESNPFSVRAHTHAAAKSIELDMYKITGY 84
Query: 997 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVI--SRLENIPT 824
LPKENP++FLFMK +KL++FHRGP HGD FLNA +EPKDV RY + + S I T
Sbjct: 85 SLPKENPITFLFMKRSKLQYFHRGPQHGDLFLNACIEPKDVTRYALEDLFKPSITPEIQT 144
Query: 823 NIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDG 644
+AF+GDTLHFL + +F S KLQTLYAT+VLPPEA++R+ S++P IY L + E
Sbjct: 145 RVAFIGDTLHFLPLGAIREIFTSSQKLQTLYATMVLPPEAMHRMHSIHPSIYELEFHEKN 204
Query: 643 FMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPT----ITAQRLETKGANHLFIFQRGN 476
F+Y PGGHAGASY H+Y QL+WL VG ++ +T+Q LETKGANHLF+FQRGN
Sbjct: 205 FIYKPGGHAGASYCHEYSQLQWLKVGKFEWCDKKYQKHHVTSQILETKGANHLFVFQRGN 264
Query: 475 YLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKF 296
+ TP RTF +VT+P IFLP++YN R PI KT+ Q+F YIKSVK ERDIWAK
Sbjct: 265 FATPTYRTFGVETKFVTLPPIFLPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDIWAKV 324
Query: 295 RQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVL 116
RQ+I T ELQ Y E+ L+VNY+ + LDS TCF++VL+G ++++L +P+ +
Sbjct: 325 RQIIKTAELQSYSAKELALIVNYYLLISKLDSVTCFDNVLTGGVLKKLFKPIVAWWSTFK 384
Query: 115 QFFRGRPSFVKLIKALDWQPITLEFPVRT 29
G+ F +L++AL+W ++L + V T
Sbjct: 385 GKIFGKEEFEQLMEALEWVDVSLSYKVET 413
>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
Length = 1541
Score = 417 bits (1073), Expect = e-114
Identities = 201/389 (51%), Positives = 273/389 (70%), Gaps = 6/389 (1%)
Frame = -3
Query: 1177 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 998
YR +K+ +A+T+ NP+AQ P AAD+LE LGI S+P+++ HTHAAAK+IE D+Y++ +
Sbjct: 25 YREIKKTIAETKQYNPYAQDPAAADSLEKLGIESNPFSVRAHTHAAAKSIELDMYKITGY 84
Query: 997 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVI--SRLENIPT 824
LPKENP++FLFMK +KL++FHRGP HGD FLNA +EPKDV RY + + S I T
Sbjct: 85 SLPKENPITFLFMKRSKLQYFHRGPQHGDLFLNAWIEPKDVTRYNLEDLFKPSITPEIQT 144
Query: 823 NIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDG 644
+AF+GDTLHFL + +F S KLQTLYAT+VLPPEA++R+ S++P IY L + E
Sbjct: 145 RVAFIGDTLHFLPLGAIREIFTSSQKLQTLYATMVLPPEAMHRMHSIHPSIYELEFHERN 204
Query: 643 FMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPT----ITAQRLETKGANHLFIFQRGN 476
F+Y PGGHAGASY H+Y QL+WL VG ++ +T+Q LETKGANHLF+FQRGN
Sbjct: 205 FIYKPGGHAGASYCHEYSQLQWLKVGKFEWCDKRYQKHYVTSQILETKGANHLFVFQRGN 264
Query: 475 YLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKF 296
+ TP RTF +VT+P IFLP++YN R PI KT+ Q+F YIKSVK ERDIWAK
Sbjct: 265 FATPTYRTFGVETKFVTLPPIFLPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDIWAKV 324
Query: 295 RQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVL 116
RQ+I T ELQ Y E+ L+VNY+ + LDS TCF++VL+G +++L +P+ +
Sbjct: 325 RQIIKTAELQSYSAKELALIVNYYLLISKLDSVTCFDNVLTGGALKKLFKPIVAWWSTFK 384
Query: 115 QFFRGRPSFVKLIKALDWQPITLEFPVRT 29
G+ F +L++AL+W ++L + V T
Sbjct: 385 GALFGKEEFEQLMEALEWVDVSLSYKVET 413
>ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1|
replicase [Alternanthera mosaic virus]
Length = 1541
Score = 416 bits (1070), Expect = e-114
Identities = 200/389 (51%), Positives = 273/389 (70%), Gaps = 6/389 (1%)
Frame = -3
Query: 1177 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 998
YR +K+ +A+T+ NP+AQ P AAD+LE LGI S+P+++ HTHAAAK+IE D+Y++ +
Sbjct: 25 YREIKKTIAETKQYNPYAQDPAAADSLEKLGIESNPFSVRAHTHAAAKSIELDMYKITGY 84
Query: 997 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVI--SRLENIPT 824
LPKENP++FLFMK +KL++FHRGP HGD FLNA +EPKDV RY + + S I T
Sbjct: 85 SLPKENPITFLFMKRSKLQYFHRGPQHGDLFLNAWIEPKDVTRYDLEDLFKPSITPEIQT 144
Query: 823 NIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDG 644
+AF+GDTLHFL + +F +S KL TLYAT+VLPPEA++R+ S++P IY L + E
Sbjct: 145 RVAFIGDTLHFLPLGAIREIFTNSQKLHTLYATMVLPPEAMHRMHSIHPSIYELEFHERN 204
Query: 643 FMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPT----ITAQRLETKGANHLFIFQRGN 476
F+Y PGGHAGASY H+Y QL+WL VG ++ +T+Q LETKGANHLF+FQRGN
Sbjct: 205 FIYKPGGHAGASYCHEYSQLQWLKVGKFEWCDKKYQKHYVTSQILETKGANHLFVFQRGN 264
Query: 475 YLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKF 296
+ TP RTF +VT+P IFLP++YN R PI KT+ Q+F YIKSVK ERDIWAK
Sbjct: 265 FATPTYRTFGVETKFVTLPPIFLPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDIWAKV 324
Query: 295 RQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVL 116
RQ+I T ELQ Y E+ L+VNY+ + LDS TCF++VL+G +++L +P+ +
Sbjct: 325 RQIIKTAELQSYSAKELALIVNYYLLISKLDSVTCFDNVLTGGALKKLFKPIVAWWSTFK 384
Query: 115 QFFRGRPSFVKLIKALDWQPITLEFPVRT 29
G+ F +L++AL+W ++L + V T
Sbjct: 385 GKIFGKEEFEQLMEALEWVDVSLSYRVET 413
>ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548097|gb|AEO12140.1|
replicase [Tamus red mosaic virus]
Length = 1501
Score = 414 bits (1064), Expect = e-113
Identities = 208/395 (52%), Positives = 270/395 (68%), Gaps = 6/395 (1%)
Frame = -3
Query: 1177 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 998
Y+ L++ L+ T +NP+A AA+ LE LGINS+P+A T HTH+AAKAIE+DLY S
Sbjct: 25 YQHLRKTLSHTATTNPYAIAESAANVLEDLGINSNPFATTAHTHSAAKAIENDLYFSASS 84
Query: 997 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNI 818
LPKENPVSFLFMKPAKLRFFHRGP H D F+N VEPKDV RY DT++S L + T+
Sbjct: 85 LLPKENPVSFLFMKPAKLRFFHRGPQHNDHFINKVVEPKDVARYDPDTLVSSLPTLSTSH 144
Query: 817 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSE---- 650
AFMGD+LHFL SF+ LF+ + +L+TL AT+VLP EA + L S+YP IYTL Y
Sbjct: 145 AFMGDSLHFLPFSFLVRLFSDNVQLKTLVATMVLPAEAKFNLASIYPNIYTLQYHRCKKG 204
Query: 649 --DGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGN 476
F Y PGGH GA Y H+ QL+WL+VG LT TITAQ++ETK ANHLFIFQRG+
Sbjct: 205 KVTHFSYAPGGHKGAEYVHELKQLDWLSVGRLT-DGVTTITAQKIETKAANHLFIFQRGS 263
Query: 475 YLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKF 296
+TP R F+T +VT+P IFLPE++N R PI KT++MQMF Y+K VK+ ERDIWAK+
Sbjct: 264 LMTPCLRNFSTETKFVTLPLIFLPEKFNARQPIRKTLVMQMFLYVKGVKQVSERDIWAKW 323
Query: 295 RQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVL 116
RQLI T++LQ + E+ L NYF F S CF+DVL G + R +P+++ + V
Sbjct: 324 RQLIKTEDLQDFSAIELLHLTNYFVFVGKQSSINCFDDVLKGGFLTRWFKPIKNWFEMVR 383
Query: 115 QFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLR 11
Q G FV+L++AL+W + L+ + + + R
Sbjct: 384 QKIFGEAEFVRLVRALEWTEVDLKLDTKNYDFKRR 418
>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
[Allium virus X]
Length = 1701
Score = 407 bits (1045), Expect = e-111
Identities = 211/386 (54%), Positives = 267/386 (69%), Gaps = 1/386 (0%)
Frame = -3
Query: 1177 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 998
Y+ K+ +A+T+ SNP+A AD LE L I S+P+AI HTHAAAKAIE+DLY V SH
Sbjct: 25 YQEFKKTMARTKLSNPYALKETEADTLENLEILSNPFAIETHTHAAAKAIENDLYFVASH 84
Query: 997 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNI 818
LP E P++FLFMK KL F RGP GD FLN VEPKD+ RYP+DT+I L ++ T +
Sbjct: 85 QLPAE-PITFLFMKRNKLAQFRRGPQQGDIFLNKIVEPKDIARYPEDTLIDSL-HVNTEV 142
Query: 817 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTY-SEDGF 641
AFMGDTLHFLS F+ LF + LQTL AT+VLP EA YR+ SL+P +YTL+Y E F
Sbjct: 143 AFMGDTLHFLSFHFLGRLFHLNKNLQTLVATMVLPAEAKYRMASLHPNVYTLSYFGEHNF 202
Query: 640 MYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPE 461
+Y PGGH GA Y H + QL+WL VG + NQ ITAQR+E+K ANHLF+FQRGN TP
Sbjct: 203 IYAPGGHHGAEYVHDFKQLDWLRVGRVRYKNQ-IITAQRIESKAANHLFVFQRGNLNTPP 261
Query: 460 RRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIS 281
R F T + YVT+P IFLP+++N R PI KT++MQ+F Y+K V + ERDI+AK RQLI
Sbjct: 262 LRGFGTCKKYVTLPRIFLPKKFNTRVPIEKTLVMQIFTYVKGVAKVTERDIYAKVRQLIK 321
Query: 280 TKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRG 101
T +LQ + SE+ +VNYF F A DS TCF D+LSG+L ++L +PL + + F G
Sbjct: 322 TDQLQGFDASELVHIVNYFCFIAKQDSMTCFSDILSGSLFKKLFQPLAAFLAECKHFIFG 381
Query: 100 RPSFVKLIKALDWQPITLEFPVRTVN 23
P F KL+KAL WQ IT+ V +N
Sbjct: 382 EPDFKKLLKALQWQDITMVVTVADIN 407
>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
Length = 1670
Score = 400 bits (1027), Expect = e-109
Identities = 200/393 (50%), Positives = 263/393 (66%), Gaps = 7/393 (1%)
Frame = -3
Query: 1177 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 998
Y +K+ L + +NP+A + AD LE LGI ++P+A PHTH AAKAIE+DLY + S
Sbjct: 25 YENVKKTLGTYKLTNPYAHSESTADLLEDLGIATNPFAAEPHTHGAAKAIENDLYYIAST 84
Query: 997 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNI 818
+ KE PV+F+FMK AKL++F RGP D F+N VEPKDV RY +DT+ S + I T
Sbjct: 85 RMTKEEPVTFMFMKRAKLQYFRRGPQQNDTFINQIVEPKDVARYDEDTLHSTIPTIETKT 144
Query: 817 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDG-- 644
F+GDTLHFL PSF+T LFA +PK+QT+ AT+VLP EALY L SLYP +Y+L+Y +
Sbjct: 145 VFIGDTLHFLPPSFLTKLFARNPKIQTVLATMVLPTEALYGLTSLYPNVYSLSYHKPSKF 204
Query: 643 -----FMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRG 479
F Y PGGH GA Y H+ Q++WL GH+ + ITAQ+LETK ANHLFI++RG
Sbjct: 205 RRKALFSYAPGGHKGAEYVHELKQIDWLRFGHI-IDGKVCITAQKLETKAANHLFIYKRG 263
Query: 478 NYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAK 299
Y TPE R F T YVT+P IFLP ++N R PI KT++MQ+F Y+K+V AKERDIWAK
Sbjct: 264 KYFTPEIRNFNTQTKYVTLPKIFLPAQFNHRVPIKKTLVMQLFMYVKTVSAAKERDIWAK 323
Query: 298 FRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRV 119
RQLI T++LQ Y P+EI LVNYF F A + T F+ +L G++I+++ RP+ + +
Sbjct: 324 IRQLIKTEDLQEYSPTEIVHLVNYFLFIAKTSAVTSFDSMLDGSIIKKIFRPVLAWFKSG 383
Query: 118 LQFFRGRPSFVKLIKALDWQPITLEFPVRTVNT 20
Q G F +L++AL W I L V V T
Sbjct: 384 YQRIFGLSEFNQLLEALSWDEIDLTLDVLPVKT 416