BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00011677
         (571 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBA18493.1| replication associated protein [Ageratum enation...   161   1e-37
ref|YP_031730.1| replication associated protein [Nanovirus-like ...   160   2e-37
ref|YP_003433566.1| replication protein [Cotton leaf curl Burewa...   160   3e-37
emb|CAJ85968.1| replication protein [Malvastrum yellow mosaic al...   159   4e-37
emb|CAJ85970.1| replication protein [Malvastrum yellow mosaic al...   159   4e-37
ref|YP_004046695.1| replication associated protein [Tomato leaf ...   159   5e-37
ref|YP_851014.1| replication protein [Malvastrum yellow mosaic a...   159   6e-37
emb|CAJ85971.1| replication protein [Malvastrum yellow mosaic al...   159   6e-37
gb|AGH20698.1| replication associated protein [Cotton leaf curl ...   158   8e-37
gb|ADF80162.1| rep [Cotton leaf curl Burewala alphasatellite] gi...   158   8e-37
emb|CBJ19310.1| replication protein [Cotton leaf curl Burewala a...   158   8e-37
gb|ABL63379.1| replication-associated protein [Nanovirus-like pa...   158   8e-37
ref|YP_425036.1| replication protein [Sida leaf curl virus-assoc...   158   1e-36
emb|CAD56271.1| replication associated protein [Nanovirus-like p...   158   1e-36
gb|ADF80163.1| rep [Cotton leaf curl Burewala alphasatellite]         158   1e-36
gb|AHB60219.1| replication associated protein [Cotton leaf curl ...   157   1e-36
emb|CCC14960.1| replication associated protein [Cotton leaf curl...   157   1e-36
ref|YP_006742179.1| replication associated protein [Cassava mosa...   157   1e-36
emb|CBY88999.1| replication protein [Ageratum conyzoides associa...   157   1e-36
emb|CBY88998.1| replication protein [Gossypium darwinii symptoml...   157   1e-36

>emb|CBA18493.1| replication associated protein [Ageratum enation virus associated
           DNA 1]
          Length = 315

 Score =  161 bits (407), Expect = 1e-37
 Identities = 85/184 (46%), Positives = 117/184 (63%), Gaps = 5/184 (2%)
 Frame = +3

Query: 33  KSSERAAVERSPERMKLEHPSAYRRVICEKANEEFMKSPKEITV--YRKWQEAVNSLIVE 206
           K  +R +V RSP RM  E+PS +RRV  + A E+F K+ KEI +   + WQ  + +L+  
Sbjct: 114 KRRQRESVIRSPVRMAEENPSVFRRVKAKIAEEDFQKTAKEIQISNLKSWQSRLKTLLER 173

Query: 207 EPDDRKIIWVYGPKGAEGKTMYARDLVRDG-WFDTDGGAPASAMKRYLMDPARNVVFDIP 383
           +PDDR IIWVYGP G EGK+ +ARDL RDG WF T GG+  +   +Y+     N+VFDIP
Sbjct: 174 DPDDRTIIWVYGPIGGEGKSTFARDLYRDGSWFYTRGGSADNVSYQYIGCLGNNIVFDIP 233

Query: 384 RCKKKRINYGFIEIMKERIMFGNKNRKFLE--LNNIQVIVMANVMPDFKKISEDRVVIIK 557
           R KK  + Y  IE+ K+R++  NK    +   +N I V+VM+N +PDF+KIS DRV +I 
Sbjct: 234 RDKKDYLQYSLIEMFKDRLIVSNKYEPLMAPLINCIHVVVMSNFLPDFEKISNDRVHVIP 293

Query: 558 A*GC 569
              C
Sbjct: 294 CIPC 297


>ref|YP_031730.1| replication associated protein [Nanovirus-like particle]
           gi|49256765|emb|CAD56267.1| replication associated
           protein [Nanovirus-like particle]
          Length = 315

 Score =  160 bits (406), Expect = 2e-37
 Identities = 85/184 (46%), Positives = 116/184 (63%), Gaps = 5/184 (2%)
 Frame = +3

Query: 33  KSSERAAVERSPERMKLEHPSAYRRVICEKANEEFMKSPKEITV--YRKWQEAVNSLIVE 206
           K  +R  V RSP RM  E+PS +RRV  + A EEF KS  EI +   + WQ  + +L+  
Sbjct: 114 KRRQRELVIRSPVRMAEENPSVFRRVKAKIAEEEFQKSAHEIQISNLKSWQSRLKTLLER 173

Query: 207 EPDDRKIIWVYGPKGAEGKTMYARDLVRDG-WFDTDGGAPASAMKRYLMDPARNVVFDIP 383
           +PDDR I+WVYGP G EGK+ +ARDL R G WF T GG+  +   +Y+     N+VFDIP
Sbjct: 174 DPDDRTILWVYGPNGGEGKSTFARDLYRSGSWFYTRGGSADNVAYQYIGCLGNNIVFDIP 233

Query: 384 RCKKKRINYGFIEIMKERIMFGNKNRKFLE--LNNIQVIVMANVMPDFKKISEDRVVIIK 557
           R KK+ + Y  IE+ K+R++  NK    +   LN I V+VM+N +PDF+KIS+DRV +I 
Sbjct: 234 RDKKEYLQYSLIEMFKDRLIVSNKYEPLMAPLLNCIHVVVMSNFLPDFEKISQDRVHVIP 293

Query: 558 A*GC 569
              C
Sbjct: 294 CIPC 297


>ref|YP_003433566.1| replication protein [Cotton leaf curl Burewala alphasatellite]
           gi|288558358|emb|CBJ19309.1| replication protein [Cotton
           leaf curl Burewala alphasatellite]
          Length = 315

 Score =  160 bits (404), Expect = 3e-37
 Identities = 84/184 (45%), Positives = 116/184 (63%), Gaps = 5/184 (2%)
 Frame = +3

Query: 33  KSSERAAVERSPERMKLEHPSAYRRVICEKANEEFMKSPKEITV--YRKWQEAVNSLIVE 206
           K  +R +V RSP RM  E+PS +RRV  + A EEF K+ KEI +   + WQ  + +L+  
Sbjct: 114 KRRQRESVIRSPVRMAEENPSVFRRVKAKIAEEEFQKTAKEIQISNLKSWQSRLKTLLER 173

Query: 207 EPDDRKIIWVYGPKGAEGKTMYARDLVRDG-WFDTDGGAPASAMKRYLMDPARNVVFDIP 383
           +PDDR I WVYGP G EGK+ +ARDL R G WF T GG+  +   +Y+     N+VFDIP
Sbjct: 174 DPDDRTIFWVYGPDGGEGKSTFARDLYRSGSWFYTRGGSADNVSYQYIGCLGNNIVFDIP 233

Query: 384 RCKKKRINYGFIEIMKERIMFGNKNRKFLE--LNNIQVIVMANVMPDFKKISEDRVVIIK 557
           R KK  + Y  IE+ K+R++  NK    +   +N+I V+VM+N +PDF+KIS DRV +I 
Sbjct: 234 RDKKDYLQYSLIEMFKDRLIVSNKYEPLMAPLINSIHVVVMSNFLPDFEKISVDRVHVIP 293

Query: 558 A*GC 569
              C
Sbjct: 294 CIPC 297


>emb|CAJ85968.1| replication protein [Malvastrum yellow mosaic alphasatellite]
          Length = 315

 Score =  159 bits (403), Expect = 4e-37
 Identities = 84/184 (45%), Positives = 116/184 (63%), Gaps = 5/184 (2%)
 Frame = +3

Query: 33  KSSERAAVERSPERMKLEHPSAYRRVICEKANEEFMKSPKEITVY--RKWQEAVNSLIVE 206
           K  +R +V RSP RM  E+PS +RRV  + A E+F K+ +EI +   + WQ  +N+L+  
Sbjct: 114 KRRQRESVIRSPVRMAEENPSLFRRVKAKIAEEDFQKTTREIEILNLKSWQLRLNTLLER 173

Query: 207 EPDDRKIIWVYGPKGAEGKTMYARDLVRDG-WFDTDGGAPASAMKRYLMDPARNVVFDIP 383
            PDDR I WVYGP G EGK+ +ARDL R G WF T GG+  +   +Y+     N+VFDIP
Sbjct: 174 APDDRTIFWVYGPTGGEGKSTFARDLYRSGTWFYTRGGSADNVSYQYIGQLGNNIVFDIP 233

Query: 384 RCKKKRINYGFIEIMKERIMFGNKNRKFLE--LNNIQVIVMANVMPDFKKISEDRVVIIK 557
           R KK  + Y  IE+ K+R++  NK    +   +N I V+VM+N MPDF+KIS+DRV +I 
Sbjct: 234 RDKKDYLQYSLIEMFKDRLIVSNKYEPLMAPLINCIHVVVMSNFMPDFEKISQDRVHVIP 293

Query: 558 A*GC 569
              C
Sbjct: 294 CRPC 297


>emb|CAJ85970.1| replication protein [Malvastrum yellow mosaic alphasatellite]
          Length = 315

 Score =  159 bits (403), Expect = 4e-37
 Identities = 84/184 (45%), Positives = 116/184 (63%), Gaps = 5/184 (2%)
 Frame = +3

Query: 33  KSSERAAVERSPERMKLEHPSAYRRVICEKANEEFMKSPKEITVY--RKWQEAVNSLIVE 206
           K  +R +V RSP RM  E+PS +RRV  + A E+F K+ +EI +   + WQ  +N+L+  
Sbjct: 114 KRRQRESVIRSPVRMAEENPSLFRRVKAKIAEEDFQKTTREIEILNLKSWQLRLNTLLER 173

Query: 207 EPDDRKIIWVYGPKGAEGKTMYARDLVRDG-WFDTDGGAPASAMKRYLMDPARNVVFDIP 383
            PDDR I WVYGP G EGK+ +ARDL R G WF T GG+  +   +Y+     N+VFDIP
Sbjct: 174 APDDRTIFWVYGPTGGEGKSTFARDLYRSGSWFYTRGGSADNVSYQYIGQLGNNIVFDIP 233

Query: 384 RCKKKRINYGFIEIMKERIMFGNKNRKFLE--LNNIQVIVMANVMPDFKKISEDRVVIIK 557
           R KK  + Y  IE+ K+R++  NK    +   +N I V+VM+N MPDF+KIS+DRV +I 
Sbjct: 234 RDKKDYLQYSLIEMFKDRLIVSNKYEPLMAPLINCIHVVVMSNFMPDFEKISQDRVHVIP 293

Query: 558 A*GC 569
              C
Sbjct: 294 CRPC 297


>ref|YP_004046695.1| replication associated protein [Tomato leaf curl Cameroon
           alphasatellite] gi|313192303|emb|CBX51429.1| replication
           associated protein [Tomato leaf curl Cameroon
           alphasatellite]
          Length = 315

 Score =  159 bits (402), Expect = 5e-37
 Identities = 85/184 (46%), Positives = 113/184 (61%), Gaps = 5/184 (2%)
 Frame = +3

Query: 33  KSSERAAVERSPERMKLEHPSAYRRVICEKANEEFMKSPKEITV--YRKWQEAVNSLIVE 206
           K  +R AVERSP RM  E+PS +RRV  + A EEF KS  EI +   + WQ  +  L+  
Sbjct: 114 KRRQREAVERSPVRMSEENPSVFRRVKAKIAEEEFQKSAPEIQISNLKSWQLRLKQLLSR 173

Query: 207 EPDDRKIIWVYGPKGAEGKTMYARDLVRDG-WFDTDGGAPASAMKRYLMDPARNVVFDIP 383
           +PDDR I WVYGP G EGK+ +ARDL R G WF T GG+  +   +Y+     N+VFDIP
Sbjct: 174 DPDDRTIFWVYGPTGGEGKSTFARDLYRSGSWFYTRGGSADNVAYQYIGCLGNNIVFDIP 233

Query: 384 RCKKKRINYGFIEIMKERIMFGNKNRKFLE--LNNIQVIVMANVMPDFKKISEDRVVIIK 557
           R KK  + Y  +E+ K+R++  NK    +   LN I V+VM+N +PD +KIS DRV +I 
Sbjct: 234 RDKKDYLQYSLVEMFKDRLVVSNKYEPIMAPMLNCIHVVVMSNFLPDMEKISSDRVHVIP 293

Query: 558 A*GC 569
              C
Sbjct: 294 CIPC 297


>ref|YP_851014.1| replication protein [Malvastrum yellow mosaic alphasatellite]
           gi|116874754|emb|CAJ85967.1| replication protein
           [Malvastrum yellow mosaic alphasatellite]
          Length = 315

 Score =  159 bits (401), Expect = 6e-37
 Identities = 84/184 (45%), Positives = 116/184 (63%), Gaps = 5/184 (2%)
 Frame = +3

Query: 33  KSSERAAVERSPERMKLEHPSAYRRVICEKANEEFMKSPKEITVY--RKWQEAVNSLIVE 206
           K  +R +V RSP RM  E+PS +RRV  + A E+F K+ +EI +   + WQ  +N+L+  
Sbjct: 114 KRRQRESVIRSPVRMAEENPSLFRRVKAKIAEEDFHKTTREIEILNLKSWQLRLNTLLER 173

Query: 207 EPDDRKIIWVYGPKGAEGKTMYARDLVRDG-WFDTDGGAPASAMKRYLMDPARNVVFDIP 383
            PDDR I WVYGP G EGK+ +ARDL R G WF T GG+  +   +Y+     N+VFDIP
Sbjct: 174 APDDRTIFWVYGPTGGEGKSTFARDLYRSGTWFYTRGGSADNVSYQYIGQLGNNIVFDIP 233

Query: 384 RCKKKRINYGFIEIMKERIMFGNKNRKFLE--LNNIQVIVMANVMPDFKKISEDRVVIIK 557
           R KK  + Y  IE+ K+R++  NK    +   +N I V+VM+N MPDF+KIS+DRV +I 
Sbjct: 234 RDKKDYLQYSLIEMFKDRLIVSNKYEPLMAPLINCIHVVVMSNFMPDFEKISQDRVHVIP 293

Query: 558 A*GC 569
              C
Sbjct: 294 CRPC 297


>emb|CAJ85971.1| replication protein [Malvastrum yellow mosaic alphasatellite]
          Length = 315

 Score =  159 bits (401), Expect = 6e-37
 Identities = 85/184 (46%), Positives = 114/184 (61%), Gaps = 5/184 (2%)
 Frame = +3

Query: 33  KSSERAAVERSPERMKLEHPSAYRRVICEKANEEFMKSPKEITV--YRKWQEAVNSLIVE 206
           K  +R +V RSP RM  E+PS +RRV  + A EEF KS  EI +   + WQ  + +L+  
Sbjct: 114 KRRQRESVIRSPVRMAEENPSVFRRVKAKLAEEEFQKSATEIQISNLKSWQLRLRTLLER 173

Query: 207 EPDDRKIIWVYGPKGAEGKTMYARDLVRDG-WFDTDGGAPASAMKRYLMDPARNVVFDIP 383
            PDDR I WVYGP G EGK+ +ARDL R G WF T GG+  +   +Y+     N+VFDIP
Sbjct: 174 VPDDRTIFWVYGPTGGEGKSTFARDLYRSGTWFYTRGGSADNVSYQYIGQLGNNIVFDIP 233

Query: 384 RCKKKRINYGFIEIMKERIMFGNKNRKFLE--LNNIQVIVMANVMPDFKKISEDRVVIIK 557
           R KK  + Y  IE+ K+R++  NK    +   +N I V+VM+N MPDF+KIS+DRV +I 
Sbjct: 234 RDKKDYLQYSLIEMFKDRLIVSNKYEPLMAPLINCIHVVVMSNFMPDFEKISQDRVHVIP 293

Query: 558 A*GC 569
              C
Sbjct: 294 CRPC 297


>gb|AGH20698.1| replication associated protein [Cotton leaf curl Burewala
           alphasatellite]
          Length = 315

 Score =  158 bits (400), Expect = 8e-37
 Identities = 84/184 (45%), Positives = 115/184 (62%), Gaps = 5/184 (2%)
 Frame = +3

Query: 33  KSSERAAVERSPERMKLEHPSAYRRVICEKANEEFMKSPKEITV--YRKWQEAVNSLIVE 206
           K  +R +V RSP RM  E+PS +RRV  + A EEF K+ KEI +   + WQ  + +L+  
Sbjct: 114 KRRQRESVIRSPVRMAEENPSVFRRVKAKIAEEEFQKTAKEIQISNLKSWQSRLKTLLER 173

Query: 207 EPDDRKIIWVYGPKGAEGKTMYARDLVRDG-WFDTDGGAPASAMKRYLMDPARNVVFDIP 383
           +PDDR I WVYGP G EGK+ +ARDL R G WF T GG+  +   +Y+     N+VFDIP
Sbjct: 174 DPDDRTIFWVYGPDGGEGKSTFARDLYRSGSWFYTRGGSADNVAYQYIGCLGNNIVFDIP 233

Query: 384 RCKKKRINYGFIEIMKERIMFGNKNRKFLE--LNNIQVIVMANVMPDFKKISEDRVVIIK 557
           R KK  + Y  IE+ K+R++  NK    +   +N I V+VM+N +PDF+KIS DRV +I 
Sbjct: 234 RDKKDYLQYSLIEMFKDRLIVSNKYEPLMAPLINCIHVVVMSNFLPDFEKISVDRVHVIP 293

Query: 558 A*GC 569
              C
Sbjct: 294 CIPC 297


>gb|ADF80162.1| rep [Cotton leaf curl Burewala alphasatellite]
           gi|295410274|gb|ADG04779.1| replication protein [Cotton
           leaf curl Burewala alphasatellite]
           gi|326787487|gb|AEA07710.1| replicase [Cotton leaf curl
           Burewala alphasatellite] gi|339649141|gb|AEJ87200.1|
           replication protein [Cotton leaf curl Burewala
           alphasatellite] gi|462078873|gb|AGH20699.1| replication
           associated protein [Cotton leaf curl Burewala
           alphasatellite] gi|563427366|gb|AHB60217.1| replication
           associated protein [Cotton leaf curl alphasatellite]
          Length = 315

 Score =  158 bits (400), Expect = 8e-37
 Identities = 84/184 (45%), Positives = 115/184 (62%), Gaps = 5/184 (2%)
 Frame = +3

Query: 33  KSSERAAVERSPERMKLEHPSAYRRVICEKANEEFMKSPKEITV--YRKWQEAVNSLIVE 206
           K  +R +V RSP RM  E+PS +RRV  + A EEF K+ KEI +   + WQ  + +L+  
Sbjct: 114 KRRQRESVIRSPVRMAEENPSVFRRVKAKIAEEEFQKTAKEIQISNLKSWQSRLKTLLER 173

Query: 207 EPDDRKIIWVYGPKGAEGKTMYARDLVRDG-WFDTDGGAPASAMKRYLMDPARNVVFDIP 383
           +PDDR I WVYGP G EGK+ +ARDL R G WF T GG+  +   +Y+     N+VFDIP
Sbjct: 174 DPDDRTIFWVYGPDGGEGKSTFARDLYRSGSWFYTRGGSADNVAYQYIGCLGNNIVFDIP 233

Query: 384 RCKKKRINYGFIEIMKERIMFGNKNRKFLE--LNNIQVIVMANVMPDFKKISEDRVVIIK 557
           R KK  + Y  IE+ K+R++  NK    +   +N I V+VM+N +PDF+KIS DRV +I 
Sbjct: 234 RDKKDYLQYSLIEMFKDRLIVSNKYEPLMAPLINCIHVVVMSNFLPDFEKISVDRVHVIP 293

Query: 558 A*GC 569
              C
Sbjct: 294 CIPC 297


>emb|CBJ19310.1| replication protein [Cotton leaf curl Burewala alphasatellite]
          Length = 315

 Score =  158 bits (400), Expect = 8e-37
 Identities = 84/184 (45%), Positives = 115/184 (62%), Gaps = 5/184 (2%)
 Frame = +3

Query: 33  KSSERAAVERSPERMKLEHPSAYRRVICEKANEEFMKSPKEITV--YRKWQEAVNSLIVE 206
           K  +R +V RSP RM  E+PS +RRV  + A EEF K+ KEI +   + WQ  + +L+  
Sbjct: 114 KRRQRESVIRSPVRMAEENPSVFRRVKAKIAEEEFQKTAKEIQISNLKSWQSRLKTLLER 173

Query: 207 EPDDRKIIWVYGPKGAEGKTMYARDLVRDG-WFDTDGGAPASAMKRYLMDPARNVVFDIP 383
           +PDDR I WVYGP G EGK+ +ARDL R G WF T GG+  +   +Y+     N+VFDIP
Sbjct: 174 DPDDRTIFWVYGPDGGEGKSTFARDLYRSGSWFYTRGGSADNVSYQYIGCLGNNIVFDIP 233

Query: 384 RCKKKRINYGFIEIMKERIMFGNKNRKFLE--LNNIQVIVMANVMPDFKKISEDRVVIIK 557
           R KK  + Y  IE+ K+R++  NK    +   +N I V+VM+N +PDF+KIS DRV +I 
Sbjct: 234 RDKKDYLQYSLIEMFKDRLIVSNKYEPLMAPLINCIHVVVMSNFLPDFEKISVDRVHVIP 293

Query: 558 A*GC 569
              C
Sbjct: 294 CIPC 297


>gb|ABL63379.1| replication-associated protein [Nanovirus-like particle]
          Length = 225

 Score =  158 bits (400), Expect = 8e-37
 Identities = 84/184 (45%), Positives = 115/184 (62%), Gaps = 5/184 (2%)
 Frame = +3

Query: 33  KSSERAAVERSPERMKLEHPSAYRRVICEKANEEFMKSPKEITV--YRKWQEAVNSLIVE 206
           K  +R +V RSP RM  E+PS +RRV  + A EEF K+ KEI +   + WQ  + +L+  
Sbjct: 24  KRRQRESVIRSPVRMAEENPSVFRRVKAKIAEEEFQKTAKEIQISNLKSWQSRLKTLLER 83

Query: 207 EPDDRKIIWVYGPKGAEGKTMYARDLVRDG-WFDTDGGAPASAMKRYLMDPARNVVFDIP 383
           +PDDR I WVYGP G EGK+ +ARDL R G WF T GG+  +   +Y+     N+VFDIP
Sbjct: 84  DPDDRTIFWVYGPDGGEGKSTFARDLYRSGSWFYTRGGSADNVAYQYIGCLGNNIVFDIP 143

Query: 384 RCKKKRINYGFIEIMKERIMFGNKNRKFLE--LNNIQVIVMANVMPDFKKISEDRVVIIK 557
           R KK  + Y  IE+ K+R++  NK    +   +N I V+VM+N +PDF+KIS DRV +I 
Sbjct: 144 RDKKDYLQYSLIEMFKDRLIVSNKYEPLMAPLINCIHVVVMSNFLPDFEKISVDRVHVIP 203

Query: 558 A*GC 569
              C
Sbjct: 204 CIPC 207


>ref|YP_425036.1| replication protein [Sida leaf curl virus-associated DNA 1]
           gi|83308075|emb|CAJ19260.1| replication protein [Sida
           leaf curl virus-associated DNA 1]
          Length = 315

 Score =  158 bits (399), Expect = 1e-36
 Identities = 84/184 (45%), Positives = 115/184 (62%), Gaps = 5/184 (2%)
 Frame = +3

Query: 33  KSSERAAVERSPERMKLEHPSAYRRVICEKANEEFMKSPKEITVY--RKWQEAVNSLIVE 206
           K  +R  V RSP RM  E+PS +RRV  + A EEF K+ +EI +   + WQ  + +L+  
Sbjct: 114 KRRQRELVIRSPVRMAEENPSVFRRVKAKLAEEEFQKTAREIQILDLKSWQLRLKTLLDR 173

Query: 207 EPDDRKIIWVYGPKGAEGKTMYARDLVRDG-WFDTDGGAPASAMKRYLMDPARNVVFDIP 383
           +PDDR I WVYGP G EGK+ +ARDL R G WF T GG+  +   +Y+     N+VFDIP
Sbjct: 174 DPDDRTIFWVYGPTGGEGKSTFARDLYRSGSWFYTRGGSADNVSYQYIGCLGNNIVFDIP 233

Query: 384 RCKKKRINYGFIEIMKERIMFGNKNRKFLE--LNNIQVIVMANVMPDFKKISEDRVVIIK 557
           R KK  + Y  IE+ K+R++  NK    +   +N I V+VM+N MPDF+KIS+DRV +I 
Sbjct: 234 RDKKDYLQYSLIEMFKDRLIVSNKYEPLMAPLINCIHVVVMSNFMPDFEKISQDRVHVIP 293

Query: 558 A*GC 569
              C
Sbjct: 294 CRPC 297


>emb|CAD56271.1| replication associated protein [Nanovirus-like particle]
          Length = 315

 Score =  158 bits (399), Expect = 1e-36
 Identities = 85/184 (46%), Positives = 115/184 (62%), Gaps = 5/184 (2%)
 Frame = +3

Query: 33  KSSERAAVERSPERMKLEHPSAYRRVICEKANEEFMKSPKEITV--YRKWQEAVNSLIVE 206
           K  +R +V RSP RM  E+PS +RRV  + A EEF KS  EI +   + WQ  + +L+  
Sbjct: 114 KRRQRESVIRSPVRMAEENPSVFRRVKTKIAEEEFQKSASEIQISNLKSWQLRLKTLLDR 173

Query: 207 EPDDRKIIWVYGPKGAEGKTMYARDLVRDG-WFDTDGGAPASAMKRYLMDPARNVVFDIP 383
           +PDDR IIWVYGP G EGK+ +ARDL R G WF T GG+  +   +Y+     N+VFDIP
Sbjct: 174 DPDDRTIIWVYGPTGGEGKSTFARDLYRSGSWFYTRGGSADNVAYQYIGCLGNNIVFDIP 233

Query: 384 RCKKKRINYGFIEIMKERIMFGNKNRKFLE--LNNIQVIVMANVMPDFKKISEDRVVIIK 557
           R KK  + Y  IE+ K+R++  NK    +   +N I V+VM+N +PDF+KIS DRV +I 
Sbjct: 234 RDKKDYLQYSLIEMFKDRLIVSNKYEPLMAPLINCIHVVVMSNFLPDFEKISSDRVHVIP 293

Query: 558 A*GC 569
              C
Sbjct: 294 CIPC 297


>gb|ADF80163.1| rep [Cotton leaf curl Burewala alphasatellite]
          Length = 315

 Score =  158 bits (399), Expect = 1e-36
 Identities = 83/184 (45%), Positives = 115/184 (62%), Gaps = 5/184 (2%)
 Frame = +3

Query: 33  KSSERAAVERSPERMKLEHPSAYRRVICEKANEEFMKSPKEITV--YRKWQEAVNSLIVE 206
           K  +R +V RSP RM  E+PS +RRV  + A EEF K+ KEI +   + WQ  + +L+  
Sbjct: 114 KRRQRESVIRSPVRMAEENPSVFRRVKAKIAEEEFQKTAKEIQISNLKSWQSRLKTLLER 173

Query: 207 EPDDRKIIWVYGPKGAEGKTMYARDLVRDG-WFDTDGGAPASAMKRYLMDPARNVVFDIP 383
           +PDDR I WVYGP G EGK+ +ARDL R G WF T GG+  +   +Y+     N+VFDIP
Sbjct: 174 DPDDRTIFWVYGPDGGEGKSTFARDLYRSGSWFYTRGGSADNVAYQYIGCLGNNIVFDIP 233

Query: 384 RCKKKRINYGFIEIMKERIMFGNKNRKFLE--LNNIQVIVMANVMPDFKKISEDRVVIIK 557
           R KK  + Y  IE+ K+R++  NK    +   +N I V+VM+N +PDF+KIS DRV ++ 
Sbjct: 234 RDKKDYLQYSLIEMFKDRLIVSNKYEPLMAPLINCIHVVVMSNFLPDFEKISVDRVHVVP 293

Query: 558 A*GC 569
              C
Sbjct: 294 CIPC 297


>gb|AHB60219.1| replication associated protein [Cotton leaf curl alphasatellite]
          Length = 315

 Score =  157 bits (398), Expect = 1e-36
 Identities = 83/184 (45%), Positives = 115/184 (62%), Gaps = 5/184 (2%)
 Frame = +3

Query: 33  KSSERAAVERSPERMKLEHPSAYRRVICEKANEEFMKSPKEITV--YRKWQEAVNSLIVE 206
           K  +R +V RSP RM  E+PS +RRV  + A E+F K+ KEI +   + WQ  + +L+  
Sbjct: 114 KRRQRESVIRSPVRMSEENPSVFRRVKAKIAEEDFQKTAKEIQISNLKSWQSRLKTLLER 173

Query: 207 EPDDRKIIWVYGPKGAEGKTMYARDLVRDG-WFDTDGGAPASAMKRYLMDPARNVVFDIP 383
           +PDDR I WVYGP G EGK+ +ARDL R G WF T GG+  +   +Y+     N+VFDIP
Sbjct: 174 DPDDRTIFWVYGPDGGEGKSTFARDLYRSGSWFYTRGGSADNVSYQYIGCLGNNIVFDIP 233

Query: 384 RCKKKRINYGFIEIMKERIMFGNKNRKFLE--LNNIQVIVMANVMPDFKKISEDRVVIIK 557
           R KK  + Y  IE+ K+R++  NK    +   +N I V+VM+N +PDF+KIS DRV +I 
Sbjct: 234 RDKKDYLQYSLIEMFKDRLIVSNKYEPLMAPLINCIHVVVMSNFLPDFEKISVDRVHVIP 293

Query: 558 A*GC 569
              C
Sbjct: 294 CRPC 297


>emb|CCC14960.1| replication associated protein [Cotton leaf curl Multan
           alphasatellite] gi|429317857|emb|CCC14962.1| replication
           associated protein [Cotton leaf curl Multan
           alphasatellite]
          Length = 315

 Score =  157 bits (398), Expect = 1e-36
 Identities = 83/184 (45%), Positives = 115/184 (62%), Gaps = 5/184 (2%)
 Frame = +3

Query: 33  KSSERAAVERSPERMKLEHPSAYRRVICEKANEEFMKSPKEITV--YRKWQEAVNSLIVE 206
           K  +R +V RSP RM  E+PS +RRV  + A E+F K+ KEI +   + WQ  + +L+  
Sbjct: 114 KRRQRESVIRSPVRMSEENPSVFRRVKAKIAEEDFQKTAKEIQISNLKSWQSRLKTLLER 173

Query: 207 EPDDRKIIWVYGPKGAEGKTMYARDLVRDG-WFDTDGGAPASAMKRYLMDPARNVVFDIP 383
           +PDDR I WVYGP G EGK+ +ARDL R G WF T GG+  +   +Y+     N+VFDIP
Sbjct: 174 DPDDRTIFWVYGPDGGEGKSTFARDLYRSGSWFYTRGGSADNVSYQYIGCLGNNIVFDIP 233

Query: 384 RCKKKRINYGFIEIMKERIMFGNKNRKFLE--LNNIQVIVMANVMPDFKKISEDRVVIIK 557
           R KK  + Y  IE+ K+R++  NK    +   +N I V+VM+N +PDF+KIS DRV +I 
Sbjct: 234 RDKKDYLQYSLIEMFKDRLIVSNKYEPLMAPLINCIHVVVMSNFLPDFEKISVDRVHVIP 293

Query: 558 A*GC 569
              C
Sbjct: 294 CRPC 297


>ref|YP_006742179.1| replication associated protein [Cassava mosaic Madagascar
           alphasatellite] gi|404503429|emb|CCM09575.1| replication
           associated protein [Cassava mosaic Madagascar
           alphasatellite] gi|404503431|emb|CCM09576.1| replication
           associated protein [Cassava mosaic Madagascar
           alphasatellite]
          Length = 315

 Score =  157 bits (398), Expect = 1e-36
 Identities = 85/184 (46%), Positives = 114/184 (61%), Gaps = 5/184 (2%)
 Frame = +3

Query: 33  KSSERAAVERSPERMKLEHPSAYRRVICEKANEEFMKSPKEITV--YRKWQEAVNSLIVE 206
           K  +R AV RSP RM  E+PS +RRV  + A EEF KS  EI +   + WQ  +  L+  
Sbjct: 114 KRRQRDAVIRSPVRMAEENPSVFRRVKAKIAEEEFQKSAPEIQIAKLKSWQSRLKQLLSR 173

Query: 207 EPDDRKIIWVYGPKGAEGKTMYARDLVRDG-WFDTDGGAPASAMKRYLMDPARNVVFDIP 383
           +PDDR I WVYGP G EGK+ +ARDL R G WF T GG+  +   +Y+     N+VFDIP
Sbjct: 174 DPDDRTIFWVYGPNGGEGKSTFARDLYRSGHWFYTRGGSADNVSYQYIGCLGNNIVFDIP 233

Query: 384 RCKKKRINYGFIEIMKERIMFGNKNRKFLE--LNNIQVIVMANVMPDFKKISEDRVVIIK 557
           R KK+ + Y  IE+ K+R++  NK    +   LN I VIVM+N +PD +KIS+DR+ +I 
Sbjct: 234 RDKKEYLQYSLIEMFKDRLIVSNKYEPLMAPMLNCIHVIVMSNFLPDTEKISKDRIHVIP 293

Query: 558 A*GC 569
              C
Sbjct: 294 CRPC 297


>emb|CBY88999.1| replication protein [Ageratum conyzoides associated symptomless
           alphasatellite]
          Length = 315

 Score =  157 bits (398), Expect = 1e-36
 Identities = 85/184 (46%), Positives = 114/184 (61%), Gaps = 5/184 (2%)
 Frame = +3

Query: 33  KSSERAAVERSPERMKLEHPSAYRRVICEKANEEFMKSPKEITV--YRKWQEAVNSLIVE 206
           K  +R +V RSP RM  E+PS +RRV  + A EEF KS  EI +   + WQ  + +L+  
Sbjct: 114 KRRQRESVIRSPVRMAEENPSVFRRVKAKIAEEEFQKSAHEIQISNLKSWQTRLKTLLER 173

Query: 207 EPDDRKIIWVYGPKGAEGKTMYARDLVRDG-WFDTDGGAPASAMKRYLMDPARNVVFDIP 383
           +PDDR I WVYGP G EGK+ +ARDL R G WF T GG+  +   +Y+     N+VFDIP
Sbjct: 174 DPDDRTIFWVYGPDGGEGKSTFARDLYRSGSWFYTRGGSADNVSYQYIGCLGNNIVFDIP 233

Query: 384 RCKKKRINYGFIEIMKERIMFGNKNRKFLE--LNNIQVIVMANVMPDFKKISEDRVVIIK 557
           R KK  + Y  IE+ K+R++  NK    +   LN I V+VM+N +PDF+KIS DRV +I 
Sbjct: 234 RDKKDYLQYSLIEMFKDRLIVSNKYEPLMAPLLNCIHVVVMSNFLPDFEKISVDRVHVIP 293

Query: 558 A*GC 569
              C
Sbjct: 294 CRPC 297


>emb|CBY88998.1| replication protein [Gossypium darwinii symptomless alphasatellite]
          Length = 315

 Score =  157 bits (398), Expect = 1e-36
 Identities = 83/184 (45%), Positives = 114/184 (61%), Gaps = 5/184 (2%)
 Frame = +3

Query: 33  KSSERAAVERSPERMKLEHPSAYRRVICEKANEEFMKSPKEITV--YRKWQEAVNSLIVE 206
           K  +R ++ RSP RM  E+PS +RRV  + A EEF K+  EI +   + WQ  + +L+  
Sbjct: 114 KRRQRESIIRSPVRMAEENPSVFRRVKAKIAEEEFQKTAHEIQISNLKSWQSRLQTLLER 173

Query: 207 EPDDRKIIWVYGPKGAEGKTMYARDLVRDG-WFDTDGGAPASAMKRYLMDPARNVVFDIP 383
            PDDR I WVYGP G EGK+ +ARDL R G WF T GG+  +   +Y+     N+VFDIP
Sbjct: 174 GPDDRTIFWVYGPDGGEGKSTFARDLYRSGTWFYTRGGSADNVSYQYIGQLGNNIVFDIP 233

Query: 384 RCKKKRINYGFIEIMKERIMFGNKNRKFLE--LNNIQVIVMANVMPDFKKISEDRVVIIK 557
           R KK  + Y  IE+ K+R++  NK    +   +N I V+VM+N MPDF+KIS+DRV +I 
Sbjct: 234 RDKKDYLQYSLIEMFKDRLIVSNKYEPLMAPLINCIHVVVMSNFMPDFEKISKDRVHVIP 293

Query: 558 A*GC 569
              C
Sbjct: 294 CRPC 297