BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00011568
         (1913 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006857637.1| hypothetical protein AMTR_s00061p00135540 [A...   586   e-164
ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transc...   536   e-149
ref|NP_001061583.1| Os08g0338200 [Oryza sativa Japonica Group] g...   518   e-144
dbj|BAK04994.1| predicted protein [Hordeum vulgare subsp. vulgare]    509   e-141
gb|EEC83408.1| hypothetical protein OsI_28861 [Oryza sativa Indi...   506   e-140
ref|XP_004972829.1| PREDICTED: probable RNA polymerase II transc...   503   e-140
dbj|BAK05807.1| predicted protein [Hordeum vulgare subsp. vulgare]    500   e-139
ref|XP_006474796.1| PREDICTED: probable RNA polymerase II transc...   499   e-138
ref|XP_002443866.1| hypothetical protein SORBIDRAFT_07g003540 [S...   499   e-138
ref|XP_006452717.1| hypothetical protein CICLE_v10007802mg [Citr...   498   e-138
ref|XP_003573495.1| PREDICTED: probable RNA polymerase II transc...   498   e-138
ref|XP_006660062.1| PREDICTED: probable RNA polymerase II transc...   495   e-137
ref|XP_006352543.1| PREDICTED: probable RNA polymerase II transc...   493   e-136
gb|ACG24327.1| BSD domain containing protein [Zea mays]               493   e-136
gb|AFW61224.1| BSD domain containing protein [Zea mays]               492   e-136
ref|XP_004248296.1| PREDICTED: probable RNA polymerase II transc...   491   e-136
ref|XP_002530618.1| TFIIH basal transcription factor complex sub...   479   e-132
ref|XP_004496077.1| PREDICTED: probable RNA polymerase II transc...   478   e-132
ref|XP_003591640.1| General transcription factor IIH subunit [Me...   473   e-130
ref|XP_006452718.1| hypothetical protein CICLE_v10007802mg [Citr...   472   e-130

>ref|XP_006857637.1| hypothetical protein AMTR_s00061p00135540 [Amborella trichopoda]
            gi|548861733|gb|ERN19104.1| hypothetical protein
            AMTR_s00061p00135540 [Amborella trichopoda]
          Length = 626

 Score =  586 bits (1510), Expect = e-164
 Identities = 312/596 (52%), Positives = 405/596 (67%), Gaps = 14/596 (2%)
 Frame = +1

Query: 154  SMRATYKPT-VKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFSKETAA 330
            +MRA YK +  K PGV GVLT+ +  F F PNDP   S++KLDV+F+ IK HKFSKE + 
Sbjct: 7    TMRAKYKASGPKDPGVAGVLTMRDDSFIFRPNDPS--SSVKLDVSFRCIKGHKFSKEGSK 64

Query: 331  QALLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQ---------QTIPQQAPP 483
            QALLNL QD   KGGG++FEF NF++R+VCRDLV ++L + Q         Q +P Q P 
Sbjct: 65   QALLNLTQD---KGGGYMFEFANFKDRDVCRDLVGRVLGRLQCLPPSDQSAQVVPAQ-PT 120

Query: 484  DNRDVLLNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELSKNKK 663
               D  L++ +ME RM +LR++S+LQKLH +LV+G VLTE EFWA R++L+++   K  K
Sbjct: 121  TQHDNQLSMAEMEQRMNLLREDSELQKLHRQLVIGGVLTETEFWATRKNLLDDAAHKASK 180

Query: 664  QMTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMSDVDF 843
            Q  G KSAMLAD+      ++N V F LTPEII+QIFAEKPAV QA+LK VP KMS+ DF
Sbjct: 181  QRAGFKSAMLADVRPLTDGRTNKVTFSLTPEIIHQIFAEKPAVHQAFLKFVPSKMSERDF 240

Query: 844  WTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTVDMASDL 1023
            WTKYCRAEY +R+K                   K D+ILA E RRKIR+VDPTVDMA+DL
Sbjct: 241  WTKYCRAEYLHRTKNSVAAAAEAAEDEELAVFLKHDDILASEARRKIRRVDPTVDMAADL 300

Query: 1024 ADDYTHLPGHGILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGDTRSV 1203
             DDY+HLPGHGILRD  +E +D ++  PKRT L+D+NRHAAVVLEG+TL + + GDTR+V
Sbjct: 301  GDDYSHLPGHGILRDGSKESVDSESELPKRTLLQDLNRHAAVVLEGRTL-DVELGDTRTV 359

Query: 1204 AQGLVRVNKGK--ANTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQYFDS 1377
            A+ L R  + +    T D+  +++R  RV +MT+IEDLQ P++L +A LCIKDPR+YFDS
Sbjct: 360  AEALARSKQAEVATETSDETENQKRLERVSQMTEIEDLQAPRSLPYAPLCIKDPREYFDS 419

Query: 1378 QQANGMYAQGEKRDFRTAE--HFNLDETYDSLANAVSRVGENGLKDPIMNPQLAVKVLDN 1551
            Q+AN   A G+       +  H +  + Y+SL   +  V   G KDPI+ P LA+KVL++
Sbjct: 420  QRANAFKATGDTGSGVNKDCCHLSTKQAYESLRAQILEVKSVGFKDPIVIPDLALKVLND 479

Query: 1552 LTHYISSTQPHKGKNAEKDVLSSLPIIEQNALKEQWKTIQELLRMFWACYPITSTFLSNK 1731
            +   +SST P  GKN +  VL  LP   +  L + W +IQELLR FW+ YP+T+TFL  K
Sbjct: 480  VNQQLSSTDPQLGKNPQATVLDMLPHRTKEELLQHWTSIQELLRHFWSSYPLTTTFLHAK 539

Query: 1732 VGKLKDTMAQIYEKLQSTKASAKPESRHQISLLIHPMLQALDAAFAHNEAESQKRS 1899
            V ++KD MAQIY KL   K S + E RHQ+SLL+ PMLQ LD AF H +AE QKRS
Sbjct: 540  VNRVKDAMAQIYRKLPEVKESVQSEFRHQVSLLVKPMLQVLDEAFKHYDAEMQKRS 595


>ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1 [Vitis vinifera] gi|296090002|emb|CBI39821.3| unnamed
            protein product [Vitis vinifera]
          Length = 602

 Score =  536 bits (1380), Expect = e-149
 Identities = 291/590 (49%), Positives = 385/590 (65%), Gaps = 10/590 (1%)
 Frame = +1

Query: 160  RATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFSKETAAQ-A 336
            RA YK +VK  GV GVL +TE KF F+PNDP   S+ + DV F+ IK HKFSK  + + A
Sbjct: 8    RARYKTSVKDSGVAGVLKMTEDKFVFMPNDPT--SSARFDVEFRFIKGHKFSKGGSNKPA 65

Query: 337  LLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTIP---QQAPPDNRDVLLN 507
            LLNL QD   KGGG+IFEF N+ +R VCR+ V + LAK+ +      +Q+     D  L+
Sbjct: 66   LLNLTQDSE-KGGGYIFEFENYPDREVCREFVGRALAKFSEASKAGSEQSAVKLFDEQLS 124

Query: 508  VEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELSKNKKQMTGLKSA 687
              +ME R+++LR++S+LQKLH + V+  VLTEAEFWA R+ L++   S+  KQ  G KSA
Sbjct: 125  TIEMERRIKLLREDSELQKLHKQFVLSGVLTEAEFWATRKKLLDGNTSRTSKQRVGFKSA 184

Query: 688  MLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMSDVDFWTKYCRAE 867
            M++D+      ++N V F+LTPEII+QIFAEKPAV QA+L  VP KM++ DFW KYCRAE
Sbjct: 185  MISDLKPLTDGRTNRVTFNLTPEIIHQIFAEKPAVHQAFLNFVPNKMTEKDFWNKYCRAE 244

Query: 868  YFYRSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTVDMASDLADDYTHLP 1047
            Y + ++                   K D+ILA+E RRKIR+VDPT+DM +D  DDY HLP
Sbjct: 245  YLHCTRNTVAAAAEAAEDEELAVFLKHDDILANEARRKIRRVDPTLDMEADQGDDYMHLP 304

Query: 1048 GHGILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGDTRSVAQGLVRVN 1227
             HGI RD  +E ID    Q +RT  +D+NRHAAVVLEG+ + + +  DTR+VA+ L +  
Sbjct: 305  DHGIFRDGSKEIIDPQYEQYRRTLSQDLNRHAAVVLEGRPI-DVELEDTRTVAEALAKSK 363

Query: 1228 KGKA--NTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQYFDSQQANGMYA 1401
            + +A     D      R  R+  MT+IEDLQ P+ L FA+LCIKDPR YFDSQQAN +  
Sbjct: 364  RVEAANEKSDGSVTRERLERISRMTEIEDLQAPRDLPFAALCIKDPRDYFDSQQANALKT 423

Query: 1402 QGE----KRDFRTAEHFNLDETYDSLANAVSRVGENGLKDPIMNPQLAVKVLDNLTHYIS 1569
             G+     +  + +   +  E Y SL   +S +   GL DPI+ P +A+KVL+ LT  IS
Sbjct: 424  LGDTLAGSKQIKCS--LSTQEAYGSLRGFISEIKSVGLSDPIVKPDIALKVLNGLTQNIS 481

Query: 1570 STQPHKGKNAEKDVLSSLPIIEQNALKEQWKTIQELLRMFWACYPITSTFLSNKVGKLKD 1749
            ST+ H GKN ++ VL  LPII +  L   W +IQELLR FW+ YPIT+T+L  K  +LKD
Sbjct: 482  STKFHLGKNPQESVLDRLPIITKEELLHHWTSIQELLRHFWSSYPITTTYLYTKASRLKD 541

Query: 1750 TMAQIYEKLQSTKASAKPESRHQISLLIHPMLQALDAAFAHNEAESQKRS 1899
             M+QIY KLQ  K S + + RHQ+SLL+ PMLQALDAAFAH +A+ QKRS
Sbjct: 542  AMSQIYPKLQEIKESVQSDFRHQVSLLVQPMLQALDAAFAHYDADQQKRS 591


>ref|NP_001061583.1| Os08g0338200 [Oryza sativa Japonica Group]
            gi|38636938|dbj|BAD03200.1| unknown protein [Oryza sativa
            Japonica Group] gi|113623552|dbj|BAF23497.1| Os08g0338200
            [Oryza sativa Japonica Group]
            gi|215686948|dbj|BAG90767.1| unnamed protein product
            [Oryza sativa Japonica Group]
          Length = 604

 Score =  518 bits (1334), Expect = e-144
 Identities = 282/601 (46%), Positives = 396/601 (65%), Gaps = 13/601 (2%)
 Frame = +1

Query: 136  MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 315
            MG++  ++ A YK T+K PG  GVL + E KFTF P+DPR  S MKL+V+F++IK HKF+
Sbjct: 1    MGSM--TIGAKYKTTLKDPGTTGVLRMNEDKFTFTPHDPR--SAMKLNVDFRSIKGHKFN 56

Query: 316  K---ETAAQALLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTIPQQ--AP 480
            K      A  LLNL +D + KGGG++FEF N   R++ RD VAK+L K Q TIP +   P
Sbjct: 57   KVDGSKPAPPLLNLSKD-SDKGGGYMFEFDNVTNRDLSRDFVAKVLGKQQGTIPPKPNVP 115

Query: 481  PDNR-----DVLLNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEE 645
            P+N      +  L+  +M+ RM++L+++S+LQKLH + V+G +L E+EFWA R++L+E+E
Sbjct: 116  PENSVTSTGEEQLSAAEMQRRMKLLQEDSELQKLHMKFVLGNILQESEFWATRKNLLEDE 175

Query: 646  LSKNKKQMTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQK 825
             +K  KQ  G KSAMLAD+  +   ++N V F LT EII+QIFAEKPAV +A+L  VP+K
Sbjct: 176  ANKGSKQRPGFKSAMLADVRPSADGRTNKVTFSLTTEIIHQIFAEKPAVHRAFLDFVPKK 235

Query: 826  MSDVDFWTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTV 1005
            MS+ DFWTKY RAEY  R+K                   K+D+ILA E R KI++VDPT+
Sbjct: 236  MSEKDFWTKYFRAEYLLRTKNTVAATAEAAEDEELAIFLKNDDILAKEARLKIKRVDPTL 295

Query: 1006 DMASDLADDYTHLPGHGILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDF 1185
            DM +D  DDY HLP HGI+RD  +E ID D    +RT  +D+NRHAAVVLEG++ S+ + 
Sbjct: 296  DMEADAGDDYIHLPDHGIIRDGSKETIDNDGELARRTLSQDLNRHAAVVLEGRS-SDVEL 354

Query: 1186 GDTRSVAQGLVRVNK-GKANTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPR 1362
             DT++VA+ + R  K   ++++   ++  R  +V  MT+IEDLQ P++L +A LCIKDPR
Sbjct: 355  TDTKTVAEAIARSKKEPPSSSISDDTNHERLVKVARMTEIEDLQAPRSLPYAPLCIKDPR 414

Query: 1363 QYFDSQQANGMYAQGEKRDFRTAEHFNL--DETYDSLANAVSRVGENGLKDPIMNPQLAV 1536
            +YFDSQQAN + + G   D R A +  L  D+ +D L   +S +  NGL  P++   +A+
Sbjct: 415  EYFDSQQANALRSLGGNNDGRHARNCRLSTDDAFDHLLGQISSIKVNGLNYPVIQSDVAL 474

Query: 1537 KVLDNLTHYISSTQPHKGKNAEKDVLSSLPIIEQNALKEQWKTIQELLRMFWACYPITST 1716
            KVL+ L   IS ++    KN +  +L  +P   ++ L + W  IQELL+ FW+ YPIT++
Sbjct: 475  KVLNELNEGISRSRRLNLKNPQDSLLGQIPRRTRDELMDHWAAIQELLQHFWSSYPITTS 534

Query: 1717 FLSNKVGKLKDTMAQIYEKLQSTKASAKPESRHQISLLIHPMLQALDAAFAHNEAESQKR 1896
             L NKV ++KD M QIY+KLQ  K SA+P+ RH+IS L+ PM QALDAAF H+  + QK 
Sbjct: 535  VLYNKVQRIKDAMTQIYQKLQDIKESAQPDVRHEISQLVKPMTQALDAAFNHDLEQQQKS 594

Query: 1897 S 1899
            S
Sbjct: 595  S 595


>dbj|BAK04994.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  509 bits (1311), Expect = e-141
 Identities = 284/591 (48%), Positives = 384/591 (64%), Gaps = 12/591 (2%)
 Frame = +1

Query: 163  ATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFSKETAAQ--- 333
            A YK T+K  G  GVL ++E KFTF PNDPR  S MKL V+F+ IK HKF+K   ++   
Sbjct: 4    AKYKATLKDRGTGGVLRMSEDKFTFTPNDPR--SLMKLSVDFQTIKGHKFNKVDGSKPTP 61

Query: 334  ALLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTIPQQ--APPDNRDVLLN 507
            ALLNL +D + KGGG+IFEF N   R++CRD VA++L KYQ T+P +   PP+   V   
Sbjct: 62   ALLNLSKD-SDKGGGYIFEFDNVGNRDLCRDFVARVLGKYQGTVPARPNVPPELSAVSTG 120

Query: 508  VE-----DMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELSKNKKQMT 672
             E     +ME RM++LR++S+LQKLH + V+G +L E+EFWA R++L+++E SK  KQ  
Sbjct: 121  PEQLSSAEMERRMKLLREDSELQKLHKKFVLGNILQESEFWATRKNLLDDETSKGSKQKP 180

Query: 673  GLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMSDVDFWTK 852
            G KSAMLAD+  +   Q+N V F LT EII+QIFAEKPAV +A+L  VP+K+S+ DFWTK
Sbjct: 181  GFKSAMLADVRPSADGQTNKVTFSLTTEIIHQIFAEKPAVHRAFLDYVPKKLSEKDFWTK 240

Query: 853  YCRAEYFYRSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTVDMASDLADD 1032
            YCRAEY  R+K                   K+D+ILA E + KI++VDPT+DM +D  DD
Sbjct: 241  YCRAEYLLRTKNTLAAKAEAAEDEELAMFLKNDDILAKEAKLKIKRVDPTLDMEADAGDD 300

Query: 1033 YTHLPGHGILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGDTRSVAQG 1212
            Y HLP HGILRD  RE  D D+   +RT  +D+NRHAAVVLEG++ ++ +  DT++VA+ 
Sbjct: 301  YIHLPDHGILRDGSRETTDTDSELARRTLSQDLNRHAAVVLEGRS-ADIESTDTKTVAEA 359

Query: 1213 LVRVNK--GKANTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQYFDSQQA 1386
            L R  K    ++  D  S ER   +   MT+IEDLQ P++L +A LCIKDPR+YFDSQQA
Sbjct: 360  LARSKKEPPPSSVADDASHERLV-KAARMTEIEDLQAPRSLPYALLCIKDPREYFDSQQA 418

Query: 1387 NGMYAQGEKRDFRTAEHFNLDETYDSLANAVSRVGENGLKDPIMNPQLAVKVLDNLTHYI 1566
            N +   G   D R A   +L  T D+  + + ++    +  P++   +A+KVL+ L   I
Sbjct: 419  NALRPLG-SNDGRKARSCSL-STDDAFRHLMDQISSVKMNCPVVQSDVALKVLNELNEGI 476

Query: 1567 SSTQPHKGKNAEKDVLSSLPIIEQNALKEQWKTIQELLRMFWACYPITSTFLSNKVGKLK 1746
            S ++    KN +  +L  LP   ++ L + W  IQELLR FW+ YPIT+T L NKV +LK
Sbjct: 477  SRSRRLNLKNPQDSLLGRLPHRTRDELMDHWMAIQELLRHFWSSYPITTTVLCNKVQRLK 536

Query: 1747 DTMAQIYEKLQSTKASAKPESRHQISLLIHPMLQALDAAFAHNEAESQKRS 1899
            + M QIY+KLQ  K SA+P+ RH+IS L+ PM QALDAAF H   + QK S
Sbjct: 537  EAMTQIYQKLQDIKESAQPDVRHEISQLVKPMTQALDAAFNHEHDQQQKSS 587


>gb|EEC83408.1| hypothetical protein OsI_28861 [Oryza sativa Indica Group]
            gi|222640385|gb|EEE68517.1| hypothetical protein
            OsJ_26954 [Oryza sativa Japonica Group]
          Length = 625

 Score =  506 bits (1302), Expect = e-140
 Identities = 282/622 (45%), Positives = 396/622 (63%), Gaps = 34/622 (5%)
 Frame = +1

Query: 136  MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 315
            MG++  ++ A YK T+K PG  GVL + E KFTF P+DPR  S MKL+V+F++IK HKF+
Sbjct: 1    MGSM--TIGAKYKTTLKDPGTTGVLRMNEDKFTFTPHDPR--SAMKLNVDFRSIKGHKFN 56

Query: 316  K---ETAAQALLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTIPQQ--AP 480
            K      A  LLNL +D + KGGG++FEF N   R++ RD VAK+L K Q TIP +   P
Sbjct: 57   KVDGSKPAPPLLNLSKD-SDKGGGYMFEFDNVTNRDLSRDFVAKVLGKQQGTIPPKPNVP 115

Query: 481  PDNR-----DVLLNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEE 645
            P+N      +  L+  +M+ RM++L+++S+LQKLH + V+G +L E+EFWA R++L+E+E
Sbjct: 116  PENSVTSTGEEQLSAAEMQRRMKLLQEDSELQKLHMKFVLGNILQESEFWATRKNLLEDE 175

Query: 646  LSKNKKQMTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQK 825
             +K  KQ  G KSAMLAD+  +   ++N V F LT EII+QIFAEKPAV +A+L  VP+K
Sbjct: 176  ANKGSKQRPGFKSAMLADVRPSADGRTNKVTFSLTTEIIHQIFAEKPAVHRAFLDFVPKK 235

Query: 826  MSDVDFWTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTV 1005
            MS+ DFWTKY RAEY  R+K                   K+D+ILA E R KI++VDPT+
Sbjct: 236  MSEKDFWTKYFRAEYLLRTKNTVAATAEAAEDEELAIFLKNDDILAKEARLKIKRVDPTL 295

Query: 1006 DMASDLADDYTHLPGHGILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDF 1185
            DM +D  DDY HLP HGI+RD  +E ID D    +RT  +D+NRHAAVVLEG++ S+ + 
Sbjct: 296  DMEADAGDDYIHLPDHGIIRDGSKETIDNDGELARRTLSQDLNRHAAVVLEGRS-SDVEL 354

Query: 1186 GDTRSVAQGLVRVNK-GKANTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPR 1362
             DT++VA+ + R  K   ++++   ++  R  +V  MT+IEDLQ P++L +A LCIKDPR
Sbjct: 355  TDTKTVAEAIARSKKEPPSSSISDDTNHERLVKVARMTEIEDLQAPRSLPYAPLCIKDPR 414

Query: 1363 QYFDSQQANGMYAQGEKRDFRTAEHFNL--DETYDSLANAVSRVGENGLKDPIMNPQLAV 1536
            +YFDSQQAN + + G   D R A +  L  D+ +D L   +S +  NGL  P++   +A+
Sbjct: 415  EYFDSQQANALRSLGGNNDGRHARNCRLSTDDAFDHLLGQISSIKVNGLNYPVIQSDVAL 474

Query: 1537 K---------------------VLDNLTHYISSTQPHKGKNAEKDVLSSLPIIEQNALKE 1653
            K                     VL+ L   IS ++    KN +  +L  +P   ++ L +
Sbjct: 475  KKLMMKAAFEDHVDIQITCDWRVLNELNEGISRSRRLNLKNPQDSLLGQIPRRTRDELMD 534

Query: 1654 QWKTIQELLRMFWACYPITSTFLSNKVGKLKDTMAQIYEKLQSTKASAKPESRHQISLLI 1833
             W  IQELL+ FW+ YPIT++ L NKV ++KD M QIY+KLQ  K SA+P+ RH+IS L+
Sbjct: 535  HWAAIQELLQHFWSSYPITTSVLYNKVQRIKDAMTQIYQKLQDIKESAQPDVRHEISQLV 594

Query: 1834 HPMLQALDAAFAHNEAESQKRS 1899
             PM QALDAAF H+  + QK S
Sbjct: 595  KPMTQALDAAFNHDLEQQQKSS 616


>ref|XP_004972829.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like isoform X1 [Setaria italica]
          Length = 600

 Score =  503 bits (1296), Expect = e-140
 Identities = 278/597 (46%), Positives = 392/597 (65%), Gaps = 11/597 (1%)
 Frame = +1

Query: 136  MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 315
            MG+L  ++ A YK T+K PG PG+L + + KFTF PNDPR  S MKL+V F++IK HKF+
Sbjct: 1    MGSL--TIGAKYKTTLKDPGTPGILRMNDDKFTFTPNDPR--SAMKLNVEFRSIKGHKFN 56

Query: 316  KETAAQ-ALLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTIPQQAPPDNR 492
            K    + ALLNL +D + KGGG++FEF N   R++CRD VA++L K+Q   P+   P   
Sbjct: 57   KVDGNKPALLNLSKD-SDKGGGYMFEFDNVGNRDLCRDFVARVLGKHQGMPPRPTMPPEI 115

Query: 493  DV------LLNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELSK 654
             V       L+  ++E R+++LR++S+LQKLH + V+G +L E+EFWA R++L+++  +K
Sbjct: 116  SVPSAGMEQLSAAEVERRVKLLREDSELQKLHKKFVLGNILQESEFWATRKNLLDDVANK 175

Query: 655  NKKQMTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMSD 834
              KQ  G K+AM     S DG ++N V F+LTPE+I+QIFAEKPAVR+A+L  VP+KM+D
Sbjct: 176  ASKQKPGFKTAMSDVRPSADG-RTNKVTFNLTPEMIHQIFAEKPAVRRAFLDFVPKKMTD 234

Query: 835  VDFWTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTVDMA 1014
            ++FW KYCRAEY  R+K                   K+D+IL  E + KI++VDPT+DM 
Sbjct: 235  LEFWRKYCRAEYLLRTKNTAAAAAEAAEDEELAVFLKNDDILVKEAKLKIKQVDPTLDME 294

Query: 1015 SDLADDYTHLPGHGILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGDT 1194
            +D  DDY HLP HGILRD  +E +D D+   +RT  +++NRHAAVVLEG   S+ +  D 
Sbjct: 295  ADAGDDYIHLPDHGILRDGSKETVDNDSEFARRTLSQELNRHAAVVLEG-IASDVELTDA 353

Query: 1195 RSVAQGLVRVNKGKANT--VDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQY 1368
            +SVA+ L R  K   +T  VD  S ER   +V  MT+IEDLQ P++L +A LCIKDPR+Y
Sbjct: 354  KSVAEALARSKKEPPSTSAVDDTSHERLL-KVARMTEIEDLQAPRSLPYAPLCIKDPREY 412

Query: 1369 FDSQQANGMYAQGEKRDFRTAEHFNL--DETYDSLANAVSRVGENGLKDPIMNPQLAVKV 1542
            FDSQQAN + + G   D R + + +L  +E +  L + +S +  N     ++   +AVKV
Sbjct: 413  FDSQQANALRSLGASNDGRKSRNCSLSIEEAFHHLTDQISSIKVNKSNCTVIQSDMAVKV 472

Query: 1543 LDNLTHYISSTQPHKGKNAEKDVLSSLPIIEQNALKEQWKTIQELLRMFWACYPITSTFL 1722
            L+ L   IS ++    KN ++ +L  +P   ++ L + W  IQELLR FW+ YPITST L
Sbjct: 473  LNELNEGISRSRRLNLKNPQEGLLGRVPQHTRDELMDHWTAIQELLRHFWSSYPITSTVL 532

Query: 1723 SNKVGKLKDTMAQIYEKLQSTKASAKPESRHQISLLIHPMLQALDAAFAHNEAESQK 1893
             NKV ++KD M QIY+KLQ+ K SA+P+ RH+IS L+ PM QALDAAF+H+  + QK
Sbjct: 533  YNKVQRVKDAMTQIYQKLQAIKESAQPDVRHEISRLVKPMTQALDAAFSHDLEQQQK 589


>dbj|BAK05807.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score =  500 bits (1288), Expect = e-139
 Identities = 282/602 (46%), Positives = 391/602 (64%), Gaps = 14/602 (2%)
 Frame = +1

Query: 136  MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 315
            MGT+  ++ A YK T+K PG  GVL ++E K  F PNDPR  S MKL V+F++IK HKF+
Sbjct: 1    MGTM--TIGAKYKTTLKDPGHGGVLRMSEDKLIFTPNDPR--SLMKLSVDFRSIKGHKFN 56

Query: 316  KETAAQA---LLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTIPQQ--AP 480
            K   ++    LLNL +  + KGGG+IFEF N   R++CRD VA++L K+Q T+P +   P
Sbjct: 57   KVDGSKPTPPLLNLSK-VSDKGGGYIFEFDNVGNRDLCRDFVARVLGKHQGTVPARPNVP 115

Query: 481  PDNRDVLLNVE-----DMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEE 645
            P+   V    E     +ME RM++LR++S+LQKLH + V+G +L E+EFWA R++L+++E
Sbjct: 116  PEKLAVSTGPEQLSSAEMERRMKLLREDSELQKLHKKFVLGNILQESEFWATRKNLLDDE 175

Query: 646  LSKNKKQMTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQK 825
             +K+ KQ  G KSAMLAD+  +   Q+N V F LT EII+QIFAEKPAV +A+L  VP+K
Sbjct: 176  TNKSSKQKPGFKSAMLADVRPSADGQTNKVTFSLTTEIIHQIFAEKPAVHRAFLDYVPKK 235

Query: 826  MSDVDFWTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTV 1005
            +S+ DFWTKYCRAEY  R+K                   K+D+ILA E + KI++VDPT+
Sbjct: 236  LSEKDFWTKYCRAEYLLRTKNTLAAKAEAADDEELAMFLKNDDILAKEAKLKIKRVDPTL 295

Query: 1006 DMASDLADDYTHLPGHGILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDF 1185
            DM +D  DDY HLP HGILRD  RE  D D+   +RT  +D+NRHAAVVLEG++ ++ + 
Sbjct: 296  DMEADAGDDYIHLPDHGILRDGSRETTDTDSELARRTLSQDLNRHAAVVLEGRS-TDIES 354

Query: 1186 GDTRSVAQGLVRVNK--GKANTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDP 1359
             DT++VA+ L R  K    ++  D  S ER   +   MT++EDLQ P++L +A LCIKDP
Sbjct: 355  TDTKTVAEALARSKKEPPPSSVADDASHERLV-KAARMTELEDLQAPRSLPYAPLCIKDP 413

Query: 1360 RQYFDSQQANGMYAQGEKRDFRTAEHFNL--DETYDSLANAVSRVGENGLKDPIMNPQLA 1533
            R+YFDSQQAN +   G   D R A   +L  D+ +  L + +S V  N    P++   +A
Sbjct: 414  REYFDSQQANALRPLG-NNDGRKARSCSLSADDAFRHLMDQISSVKMN---CPVVQADVA 469

Query: 1534 VKVLDNLTHYISSTQPHKGKNAEKDVLSSLPIIEQNALKEQWKTIQELLRMFWACYPITS 1713
            +KVL+ L   IS ++    KN +  +L  LP   ++ L + W  IQELLR FW+ YPIT+
Sbjct: 470  LKVLNELNEGISRSRRLNLKNPQDSLLGRLPHRTRDELMDHWTAIQELLRHFWSSYPITT 529

Query: 1714 TFLSNKVGKLKDTMAQIYEKLQSTKASAKPESRHQISLLIHPMLQALDAAFAHNEAESQK 1893
              LSNKV +LK+ M QIY+KLQ  K SA+P+ RH+IS L+ PM QALDAAF H++ +   
Sbjct: 530  AVLSNKVQRLKEAMTQIYQKLQDIKESAQPDVRHEISQLVKPMTQALDAAFYHDQQQKSS 589

Query: 1894 RS 1899
            +S
Sbjct: 590  KS 591


>ref|XP_006474796.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Citrus sinensis]
          Length = 597

 Score =  499 bits (1286), Expect = e-138
 Identities = 272/594 (45%), Positives = 381/594 (64%), Gaps = 7/594 (1%)
 Frame = +1

Query: 139  GTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFSK 318
            G  Q + RA YK +VK PG PG L + +QK  F+P++    S  KL V FK+I+ HK++K
Sbjct: 3    GAAQVTKRAKYKISVKDPGTPGALRMNDQKLMFMPDNRN--SGAKLVVEFKSIQGHKYTK 60

Query: 319  ETAAQA-LLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTIPQQAPPDNR- 492
            E + +  L+NL      +GG +IFEF ++ + +VCRD V+K+L K ++T P  A   +  
Sbjct: 61   EGSNKPPLINLAN---AQGGSYIFEFDSYADLHVCRDFVSKVLEKSKET-PNAALEKSAI 116

Query: 493  ---DVLLNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELSKNKK 663
               D  L+ E+M+ R+++L++NS+LQKLH + V G +LTEAEFWA R+ L++ + SK  K
Sbjct: 117  KLPDEQLSEEEMQLRIKLLQENSELQKLHRQFVGGNILTEAEFWAARKKLLDIDPSKKSK 176

Query: 664  QMTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMSDVDF 843
            Q  G KSAM++D+      ++N V F LTPEII QIFAEKPAV +A+L  VP KM++++F
Sbjct: 177  QRVGFKSAMISDIRPATDGRTNKVTFSLTPEIILQIFAEKPAVHRAFLNFVPNKMTEMEF 236

Query: 844  WTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTVDMASDL 1023
            WTKYCRAEY  R+K                   K+D+ILA+E R+KIR+VDPT+DM +D 
Sbjct: 237  WTKYCRAEYLSRTKNYHAVVAEAAEDEELAVFLKEDDILANEVRKKIRRVDPTLDMEADE 296

Query: 1024 ADDYTHLPGHGILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGDTRSV 1203
             DDYTHLP HGI RD  +E  +  +   +RT L+D+NRHAAVVLEG+T+       TR++
Sbjct: 297  GDDYTHLPDHGIFRDGTKESNELQSEHYRRTLLQDLNRHAAVVLEGRTIDVEREDSTRAL 356

Query: 1204 AQGLVRVNKGKANTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQYFDSQQ 1383
            A+ L R  +G     D  ++E R +R   + +IEDLQ P  L  A L IKD R+YFDSQQ
Sbjct: 357  AEALARSKRGNEG-ADNNANEERLDRTPRVAEIEDLQAPHCLPLAPLSIKDAREYFDSQQ 415

Query: 1384 ANGMYAQGEKRDFRTAEHFNL--DETYDSLANAVSRVGENGLKDPIMNPQLAVKVLDNLT 1557
            AN + A    RD + +   +L   E Y S+ +A+S + + GL DPI+NP++A+KV   LT
Sbjct: 416  ANTLKA---SRDAQASMKCSLSKQEAYRSVRDAISEIKDMGLSDPIVNPEVALKVYSGLT 472

Query: 1558 HYISSTQPHKGKNAEKDVLSSLPIIEQNALKEQWKTIQELLRMFWACYPITSTFLSNKVG 1737
            H ISS + H GKN  + VL  LP   +  L   W +IQELL+ FW+ YPIT+ +L +KV 
Sbjct: 473  HNISSIKYHLGKNPRETVLDRLPSATKEKLLYHWMSIQELLKHFWSSYPITTPYLYSKVN 532

Query: 1738 KLKDTMAQIYEKLQSTKASAKPESRHQISLLIHPMLQALDAAFAHNEAESQKRS 1899
            +LKD ++ IY +L+  K S   + RHQ+SLL+ PM QALDAA  H +A+ QKRS
Sbjct: 533  RLKDALSNIYPQLEEMKESLPADLRHQVSLLVRPMQQALDAAIQHYDADLQKRS 586


>ref|XP_002443866.1| hypothetical protein SORBIDRAFT_07g003540 [Sorghum bicolor]
            gi|241940216|gb|EES13361.1| hypothetical protein
            SORBIDRAFT_07g003540 [Sorghum bicolor]
          Length = 600

 Score =  499 bits (1286), Expect = e-138
 Identities = 274/599 (45%), Positives = 393/599 (65%), Gaps = 11/599 (1%)
 Frame = +1

Query: 136  MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 315
            MG++  ++ A YK T+K PG PG+L + + +FTF PNDPR  S MK +V+F+ IK HKF+
Sbjct: 1    MGSM--TIGAKYKTTIKDPGTPGILRMNDDRFTFTPNDPR--SAMKFNVDFRTIKGHKFN 56

Query: 316  K-ETAAQALLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTIPQQ--APPD 486
            K E    ALLNL ++   K GG+IFEF N   R++CRD VA++L K+Q T+P +    P+
Sbjct: 57   KVEGNKAALLNLSKED--KAGGYIFEFDNVGNRDLCRDFVARVLGKHQGTVPPRPTVAPE 114

Query: 487  NRDVL-----LNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELS 651
            N         L+V ++E R+++LR++S+LQKLH + V+G +L E+EFWA R++L+++E +
Sbjct: 115  NSVASAALEQLSVAEVERRVKLLREDSELQKLHKKFVLGNILQESEFWATRKNLLDDEAN 174

Query: 652  KNKKQMTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMS 831
            K  KQ  G K++++    +TDG ++N V F +TPE+I+QIFAEKPAVR+AYL  VP+KM 
Sbjct: 175  KRSKQRAGFKNSLVDIKPTTDG-RTNKVTFQITPEMIHQIFAEKPAVRRAYLDYVPKKMV 233

Query: 832  DVDFWTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTVDM 1011
            +  FW KYCRAEY +R+K                   K+D+ILA E   +I++VDPT+DM
Sbjct: 234  ETRFWEKYCRAEYLFRTKNTAAATAEAAGDEELAIFLKNDDILAKEFWLQIKRVDPTLDM 293

Query: 1012 ASDLADDYTHLPGHGILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGD 1191
             +D  DDY HLP HGI RD  +E ID D+   +RT  +D+NRHAAVVLEG++L + +  D
Sbjct: 294  EADTGDDYIHLPDHGIHRDGNKETIDADSELARRTLSQDLNRHAAVVLEGRSL-DVESTD 352

Query: 1192 TRSVAQGLVRVNKGKANT-VDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQY 1368
             +++A+ L R  K   +T +D  ++  R  +V  MT+IEDLQ P++L +A LCIKDPR+Y
Sbjct: 353  PKTLAEALARSKKEPPSTSIDDDANHERLVKVARMTEIEDLQAPRSLPYAPLCIKDPREY 412

Query: 1369 FDSQQANGMYAQGEKRDFRTAEHFNL--DETYDSLANAVSRVGENGLKDPIMNPQLAVKV 1542
            FDSQQAN + + G   D R A   +L  +E +  L + +S +  N L  PI+   +A+KV
Sbjct: 413  FDSQQANALRSLGGSNDGRKARTCSLSTEEAFHHLMDQMSSIKVNKLNCPIIQSDMALKV 472

Query: 1543 LDNLTHYISSTQPHKGKNAEKDVLSSLPIIEQNALKEQWKTIQELLRMFWACYPITSTFL 1722
            L+ L   IS ++    KN ++ +L  LP   ++ L + W  IQELLR FW+ YPITS  L
Sbjct: 473  LNELNEGISRSRRLNLKNPQEGLLGQLPQHTRDELMDHWTAIQELLRHFWSSYPITSAVL 532

Query: 1723 SNKVGKLKDTMAQIYEKLQSTKASAKPESRHQISLLIHPMLQALDAAFAHNEAESQKRS 1899
             NKV ++K+ M QIY+KLQ  K SA+P+ RH+IS L+ PM QALDAAF H+  + QK S
Sbjct: 533  YNKVQRVKEAMTQIYQKLQLIKESAQPDVRHEISRLVKPMTQALDAAFNHDLEQQQKSS 591


>ref|XP_006452717.1| hypothetical protein CICLE_v10007802mg [Citrus clementina]
            gi|557555943|gb|ESR65957.1| hypothetical protein
            CICLE_v10007802mg [Citrus clementina]
          Length = 597

 Score =  498 bits (1283), Expect = e-138
 Identities = 271/594 (45%), Positives = 380/594 (63%), Gaps = 7/594 (1%)
 Frame = +1

Query: 139  GTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFSK 318
            G  Q + RA YK +VK PG  G L + +QK  F+P++    S  KL V FK+I+ HK++K
Sbjct: 3    GAAQVTKRAKYKISVKDPGTTGALRMNDQKLMFMPDNRN--SGAKLVVEFKSIQGHKYTK 60

Query: 319  ETAAQA-LLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTIPQQAPPDNR- 492
            E + +  L+NL      +GG +IFEF ++ + +VCRD V+K+L K ++T P  A   +  
Sbjct: 61   EGSNKPPLINLAN---AQGGSYIFEFDSYSDLHVCRDFVSKVLEKSKET-PNAALEKSAV 116

Query: 493  ---DVLLNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELSKNKK 663
               D  L+ E+M+ R+++L++NS+LQKLH + V G +LTEAEFWA R+ L++ + SK  K
Sbjct: 117  KLPDEQLSEEEMQLRIKLLQENSELQKLHRQFVGGNILTEAEFWAARKKLLDRDPSKKSK 176

Query: 664  QMTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMSDVDF 843
            Q  G KSAM++D+      ++N V F LTPEII QIFAEKPAV +A+L  VP KM++++F
Sbjct: 177  QRVGFKSAMISDIRPATDGRTNKVTFSLTPEIILQIFAEKPAVHRAFLNFVPNKMTEMEF 236

Query: 844  WTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTVDMASDL 1023
            WTKYCRAEY  R+K                   K+D+ILA+E R+KIR+VDPT+DM +D 
Sbjct: 237  WTKYCRAEYLSRTKNYHAVVAEAAEDEELAVFLKEDDILANEVRKKIRRVDPTLDMEADE 296

Query: 1024 ADDYTHLPGHGILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGDTRSV 1203
             DDYTHLP HGI RD  +E  +  +   +RT L+D+NRHAAVVLEG+T+       TR++
Sbjct: 297  GDDYTHLPDHGIFRDGTKESNELQSEHYRRTLLQDLNRHAAVVLEGRTIDVEREDSTRAL 356

Query: 1204 AQGLVRVNKGKANTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQYFDSQQ 1383
            A+ L R  +G     D  ++E R +R   + +IEDLQ P  L  A L IKD R+YFDSQQ
Sbjct: 357  AEALARSKRGNEG-ADNNANEERLDRTPRVAEIEDLQAPHCLPLAPLSIKDAREYFDSQQ 415

Query: 1384 ANGMYAQGEKRDFRTAEHFNL--DETYDSLANAVSRVGENGLKDPIMNPQLAVKVLDNLT 1557
            AN + A    RD + +   +L   E Y S+ +A+S + + GL DPI+NP++A+KV   LT
Sbjct: 416  ANTLKA---SRDSQASMKCSLSRQEAYGSVRDAISEIKDMGLSDPIVNPEVALKVYSGLT 472

Query: 1558 HYISSTQPHKGKNAEKDVLSSLPIIEQNALKEQWKTIQELLRMFWACYPITSTFLSNKVG 1737
            H ISS + H GKN  + VL  LP   +  L   W +IQELL+ FW+ YPIT+ +L +KV 
Sbjct: 473  HNISSIKYHLGKNPRETVLDRLPSATKEKLLYHWMSIQELLKHFWSSYPITTPYLYSKVN 532

Query: 1738 KLKDTMAQIYEKLQSTKASAKPESRHQISLLIHPMLQALDAAFAHNEAESQKRS 1899
            +LKD ++ IY +L+  K S   + RHQ+SLL+ PM QALDAA  H +A+ QKRS
Sbjct: 533  RLKDALSNIYPQLEEMKESLPADLRHQVSLLVRPMQQALDAAIQHYDADLQKRS 586


>ref|XP_003573495.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Brachypodium distachyon]
          Length = 602

 Score =  498 bits (1282), Expect = e-138
 Identities = 276/601 (45%), Positives = 387/601 (64%), Gaps = 13/601 (2%)
 Frame = +1

Query: 136  MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 315
            MGT+  ++ A YK T+K PG  GVL + E K  FIPNDPR  S MKL+V+F+ IK HKF+
Sbjct: 1    MGTM--TIGAKYKTTLKDPGTTGVLRMNEDKLAFIPNDPR--SLMKLNVDFRTIKGHKFN 56

Query: 316  KETAAQA---LLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTIPQQ--AP 480
            K   ++    LLNL +D + KGGG++FEF N   R++CRD VA++L K+Q  +P +  AP
Sbjct: 57   KVDGSKPTPPLLNLSKD-SDKGGGYMFEFDNVGNRDLCRDFVARVLGKHQGIVPPRPNAP 115

Query: 481  PDNRDVLLNVE-----DMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEE 645
            P+        E     +ME RM++LR++S+LQKLH + V+G +L E+EFWA R++L+++E
Sbjct: 116  PEKSVAAAGPEQLSSAEMERRMKLLREDSELQKLHKKFVLGNILQESEFWATRKNLLDDE 175

Query: 646  LSKNKKQMTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQK 825
             +   KQ  G +S MLAD+  +   Q+N V F LT EII+QIFAEKPAV +A+L  VP+K
Sbjct: 176  ANTASKQKPGFRSVMLADVRPSADGQTNKVTFSLTNEIIHQIFAEKPAVHRAFLDYVPKK 235

Query: 826  MSDVDFWTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTV 1005
            +S+ DFWTKYCRAEY  R+K                   ++D+I+A E + KI++VDPT+
Sbjct: 236  LSEKDFWTKYCRAEYLLRTKNTLAAKAEAADDEELAIFLRNDDIVAKEAKLKIKRVDPTL 295

Query: 1006 DMASDLADDYTHLPGHGILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDF 1185
            DM +D  DDY HLP HGILRD  RE  D D+   +RT  +D+NRHAAVVLEG+  ++ + 
Sbjct: 296  DMEADAGDDYIHLPDHGILRDGSRETTDTDSELARRTLSQDLNRHAAVVLEGRK-TDVEI 354

Query: 1186 GDTRSVAQGLVR-VNKGKANTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPR 1362
             D ++VA+ L R   +   +++   +   R  +V  MT+IEDLQ P++L +A LCIKDPR
Sbjct: 355  ADAKTVAEALARSKTETPCSSIADDASHERLLKVARMTEIEDLQAPRSLPYAPLCIKDPR 414

Query: 1363 QYFDSQQANGMYAQGEKRDFRTAEHFNL--DETYDSLANAVSRVGENGLKDPIMNPQLAV 1536
            +YFDSQQAN +   G   D R A   +L  D+ +  L + +S V  N L  P++   +A+
Sbjct: 415  EYFDSQQANPLRPLG--GDGRKARSCSLSTDDAFRHLMDQISSVKVNKLSCPVVQSNVAL 472

Query: 1537 KVLDNLTHYISSTQPHKGKNAEKDVLSSLPIIEQNALKEQWKTIQELLRMFWACYPITST 1716
            KVL+ L   IS ++    KN +  +L  LP   ++ L + W  IQELLR FW+ YPIT+T
Sbjct: 473  KVLNELNEGISRSRRLNLKNPQDSLLGRLPHRTRDELMDHWTAIQELLRHFWSSYPITTT 532

Query: 1717 FLSNKVGKLKDTMAQIYEKLQSTKASAKPESRHQISLLIHPMLQALDAAFAHNEAESQKR 1896
             L NK+ ++KD M QIY+KLQ  K SA+P+ RH+IS L+ PM QALDAAF H+  + QK 
Sbjct: 533  VLYNKIQRVKDAMTQIYQKLQDIKESAQPDVRHEISQLVKPMTQALDAAFNHDLEQQQKS 592

Query: 1897 S 1899
            S
Sbjct: 593  S 593


>ref|XP_006660062.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Oryza brachyantha]
          Length = 621

 Score =  495 bits (1275), Expect = e-137
 Identities = 273/601 (45%), Positives = 384/601 (63%), Gaps = 11/601 (1%)
 Frame = +1

Query: 130  EKMGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHK 309
            E++   +++   + + T K   +     + E KFTF PNDPR  S MKL+V+F++IK HK
Sbjct: 19   EELNNFKRNEVWSLEKTPKQNVIGTKCRMNEDKFTFTPNDPR--SAMKLNVDFRSIKGHK 76

Query: 310  FSK---ETAAQALLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTIPQQAP 480
            F+K      A  LLNL +D + KGGG+IFEF N   R++ RD VA++L K Q TIP   P
Sbjct: 77   FNKVDGNKPAPPLLNLSKD-SDKGGGYIFEFENVTSRDLSRDFVARVLGKQQGTIP---P 132

Query: 481  PDNRDVL-----LNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEE 645
            P+N         L+  +M+ RM++L ++S+LQKLH +LV+G +L E+EFWA R++L+++E
Sbjct: 133  PENSVTSTDPEQLSAAEMQRRMKLLHEDSELQKLHRKLVIGNILQESEFWATRKNLLDDE 192

Query: 646  LSKNKKQMTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQK 825
             +K  KQ  G KSAMLAD+  +   ++N V F LT EII+QIFAEKPAV +A+L  VP+K
Sbjct: 193  ANKGSKQRPGFKSAMLADVRPSADGRTNKVTFSLTTEIIHQIFAEKPAVHRAFLNFVPKK 252

Query: 826  MSDVDFWTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTV 1005
            MS+ DFWTKY RAEY  R+K                   K+D+ILA E R KI++VDPT+
Sbjct: 253  MSEKDFWTKYFRAEYLLRTKNTVAAAAEAAEDEELAVFLKNDDILAKEARLKIKRVDPTL 312

Query: 1006 DMASDLADDYTHLPGHGILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDF 1185
            DM +D  DDY HLP HGI+RD  +E I+ D    +RT  +D+NRHAAVVLEG++ S+ + 
Sbjct: 313  DMEADAGDDYIHLPDHGIIRDGSKETIENDGELARRTLSQDLNRHAAVVLEGRS-SDVEL 371

Query: 1186 GDTRSVAQGLVRVNK-GKANTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPR 1362
             DT++VA+ L R  +    +++   +   R  +V  MT+IEDLQ P+++ +A LCIKDPR
Sbjct: 372  TDTKTVAEALARSKREPPPSSISDDTSHERLVKVARMTEIEDLQAPRSVPYAPLCIKDPR 431

Query: 1363 QYFDSQQANGMYAQGEKRDFRTAEHFNLD--ETYDSLANAVSRVGENGLKDPIMNPQLAV 1536
            +YFDSQQAN + + G   D R A +  L   + +D L   +S +  NGL  P++   +A 
Sbjct: 432  EYFDSQQANALRSLGGNNDGRHARNCRLSAHDAFDHLLGQISSIKVNGLNYPVVQSDVAF 491

Query: 1537 KVLDNLTHYISSTQPHKGKNAEKDVLSSLPIIEQNALKEQWKTIQELLRMFWACYPITST 1716
            KVL+ L   IS T+    KN +  +L  +P   ++ L + W  IQELLR FW+ YPIT++
Sbjct: 492  KVLNELNDGISRTRRLNLKNPQDSLLGQIPRHTRDELMDHWTAIQELLRHFWSSYPITTS 551

Query: 1717 FLSNKVGKLKDTMAQIYEKLQSTKASAKPESRHQISLLIHPMLQALDAAFAHNEAESQKR 1896
             L NKV ++KD M QIY+KLQ+ K SA+P+ RH+IS L+ PM QALDAAF H   + QK 
Sbjct: 552  VLYNKVQRIKDAMTQIYQKLQNIKESAQPDVRHEISQLVKPMTQALDAAFNHELEQQQKS 611

Query: 1897 S 1899
            S
Sbjct: 612  S 612


>ref|XP_006352543.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Solanum tuberosum]
          Length = 599

 Score =  493 bits (1269), Expect = e-136
 Identities = 277/589 (47%), Positives = 383/589 (65%), Gaps = 9/589 (1%)
 Frame = +1

Query: 160  RATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFSKETAA-QA 336
            RA YK +VK PGVPGVL LT+++F F+PNDP   +  KL+V FK IK HK SKE ++ QA
Sbjct: 9    RAKYKTSVKVPGVPGVLKLTKERFYFMPNDPTLTT--KLNVEFKLIKGHKSSKECSSKQA 66

Query: 337  LLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQT--IPQQAPPDNRDVLLNV 510
            LLNL Q    +GG ++FEF +F +R+ CRD VA  +A   +      + P    D  L+ 
Sbjct: 67   LLNLTQ---AQGGNYLFEFDSFPDRDQCRDFVASAIAACGEIGKATSEKPAVPHDEQLSA 123

Query: 511  EDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELSKNKKQMTGLKSAM 690
             +M  R+++L++NS+LQKLH +LV+G +L+EAEFWA R+ L+E+  +K  KQ   LK+ M
Sbjct: 124  TEMGRRIKLLQENSELQKLHRQLVIGGILSEAEFWAARKKLLEQSENKKPKQRVALKNDM 183

Query: 691  LADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMSDVDFWTKYCRAEY 870
             +    +DG Q+N V F+LTPE+I+QIFAEKPAVRQAYLK VP KMS+ +FWTKY RAEY
Sbjct: 184  WSVKPLSDG-QTNRVTFNLTPEVIHQIFAEKPAVRQAYLKFVPGKMSEKEFWTKYSRAEY 242

Query: 871  FYRSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTVDMASDLADDYTHLPG 1050
             + +K                   K D++L  E RRKIR+VDPT+DM +D  DDY HLP 
Sbjct: 243  LHSTKNIVAAAAEAAEDEELAVFLKQDDMLVSEARRKIRRVDPTLDMEADEGDDYMHLPD 302

Query: 1051 HGILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGDTRSVAQGLVRVNK 1230
            HG+ +   +E ++      KR+F + +N+HAAVVL G+ + + + GDTRSVA+   R  +
Sbjct: 303  HGLPQGETKEILEPQYEPFKRSFSQYLNQHAAVVLRGRVI-DVELGDTRSVAEAFTRTYQ 361

Query: 1231 GKANTVDKLSDER----RKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQYFDSQQANGMY 1398
             +  T  ++SDE     R  +V  + +IEDLQGPQ    A L IKDPR YFDSQQAN + 
Sbjct: 362  AEQAT--EVSDENAYRERVKKVSRVAEIEDLQGPQDPPVALLSIKDPRDYFDSQQANAIK 419

Query: 1399 AQGEKRDFRTAEHFNL--DETYDSLANAVSRVGENGLKDPIMNPQLAVKVLDNLTHYISS 1572
            A G+         F++  +E + SL +++S +   GL +PI++P++A+KV + L+  ISS
Sbjct: 420  ALGDAETGIRQLKFSVSKEEAFCSLKDSISEINSQGLIEPIISPEVALKVFNGLSQNISS 479

Query: 1573 TQPHKGKNAEKDVLSSLPIIEQNALKEQWKTIQELLRMFWACYPITSTFLSNKVGKLKDT 1752
            T+ + GKN  + VL  LP   +N L   W +IQELL+ FW+ YPIT+ +   KV +LKD 
Sbjct: 480  TKYYLGKNPHESVLDQLPSATKNELLLHWTSIQELLKHFWSSYPITTKYFYAKVTRLKDA 539

Query: 1753 MAQIYEKLQSTKASAKPESRHQISLLIHPMLQALDAAFAHNEAESQKRS 1899
            M+QIY KLQ  K S + + RHQ+SLL+ PMLQALDAAFAH +A+ QKRS
Sbjct: 540  MSQIYPKLQEIKESVQSDVRHQVSLLVQPMLQALDAAFAHYDADIQKRS 588


>gb|ACG24327.1| BSD domain containing protein [Zea mays]
          Length = 600

 Score =  493 bits (1269), Expect = e-136
 Identities = 274/599 (45%), Positives = 386/599 (64%), Gaps = 11/599 (1%)
 Frame = +1

Query: 136  MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 315
            MG++  ++ A YK T+K PG PG+L +   +FTF PNDPR  S MK +V+F+ IK HKF+
Sbjct: 1    MGSM--TIGAKYKTTIKDPGTPGILRMNGDRFTFTPNDPR--SAMKFNVDFRTIKGHKFN 56

Query: 316  K-ETAAQALLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTIPQQ--APPD 486
            K E    ALLNL ++   K GG+IFEF N   R+ CRD VA++L K+Q  +P +    P+
Sbjct: 57   KVEGNKAALLNLSKED--KAGGYIFEFDNVGNRDQCRDFVARVLGKHQGIVPPRPTVAPE 114

Query: 487  NRDVL-----LNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELS 651
            N         L+  ++E R+++LR++S+LQKLH + V+G +L E+EFWA R++L+++E +
Sbjct: 115  NSVASAALEQLSAAEVERRVKLLREDSELQKLHKKFVLGNILQESEFWATRKNLLDDEAN 174

Query: 652  KNKKQMTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMS 831
            K  KQ  G KSA++    +TDG ++N V F +TPE+I+QIFAEKPAVR+AYL  VP+KMS
Sbjct: 175  KRSKQKPGFKSALVDIRPTTDG-RTNKVTFQITPEMIHQIFAEKPAVRRAYLDFVPKKMS 233

Query: 832  DVDFWTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTVDM 1011
            +  FW KYCRAEY  R+K                   K+D+ILA E + KI++VDPT+DM
Sbjct: 234  ETRFWEKYCRAEYLVRTKNTAAATAEAAGNEELAIFLKNDDILAKEAKLKIKRVDPTLDM 293

Query: 1012 ASDLADDYTHLPGHGILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGD 1191
             +D  DDY HLP HGI RD  +E +D D+   +RT  +D+NRHAAVVLEG++L + +  D
Sbjct: 294  EADTGDDYIHLPDHGIHRDGSKETVDADSELARRTLSQDLNRHAAVVLEGRSL-DVESSD 352

Query: 1192 TRSVAQGLVRVNKGKANTVDKLSDER-RKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQY 1368
             +++A+ L R  K   +T +   D   R  +V  MT+IEDLQ P++L +A LCIKDPR+Y
Sbjct: 353  PKTLAEALARSKKEPPSTSNVDDDNHERLMKVARMTEIEDLQAPRSLLYAPLCIKDPREY 412

Query: 1369 FDSQQANGMYAQGEKRDFRTAEHFNL--DETYDSLANAVSRVGENGLKDPIMNPQLAVKV 1542
            FDSQQAN + + G     R A   +L  +E +  L + +S V  N L  PI+   +A+KV
Sbjct: 413  FDSQQANALRSLGGSNGGRKAHSCSLSTEEVFHHLMDQMSSVKVNRLNCPIVQSDMALKV 472

Query: 1543 LDNLTHYISSTQPHKGKNAEKDVLSSLPIIEQNALKEQWKTIQELLRMFWACYPITSTFL 1722
            L+ L   IS ++    KN ++ +L  LP   ++ L + W  IQELLR FW+ YPITS  L
Sbjct: 473  LNELNEGISRSRRLNLKNPQEGLLGQLPQHTRDELMDHWTAIQELLRHFWSSYPITSAVL 532

Query: 1723 SNKVGKLKDTMAQIYEKLQSTKASAKPESRHQISLLIHPMLQALDAAFAHNEAESQKRS 1899
             NKV ++K+ M QIY+KLQ  K  A+P+ RH+IS L+ PM QALDAAF H+  + QK S
Sbjct: 533  YNKVQRVKEAMTQIYQKLQLIKELAQPDVRHEISRLVKPMTQALDAAFNHDLEQQQKSS 591


>gb|AFW61224.1| BSD domain containing protein [Zea mays]
          Length = 600

 Score =  492 bits (1267), Expect = e-136
 Identities = 274/599 (45%), Positives = 386/599 (64%), Gaps = 11/599 (1%)
 Frame = +1

Query: 136  MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 315
            MG++  ++ A YK T+K PG PG+L +   +FTF PNDPR  S MK +V+F+ IK HKF+
Sbjct: 1    MGSM--TIGAKYKTTIKDPGTPGILRMNGDRFTFTPNDPR--SAMKFNVDFRTIKGHKFN 56

Query: 316  K-ETAAQALLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTIPQQ--APPD 486
            K E    ALLNL ++   K GG+IFEF N   R+ CRD VA++L K+Q  +P +    P+
Sbjct: 57   KVEGNKAALLNLSKED--KAGGYIFEFDNVGNRDQCRDFVARVLGKHQGIVPPRPTVAPE 114

Query: 487  NRDVL-----LNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELS 651
            N         L+  ++E R+++LR++S+LQKLH + V+G +L E+EFWA R++L+++E +
Sbjct: 115  NSVASAALEQLSAAEVERRVKLLREDSELQKLHKKFVLGNILQESEFWATRKNLLDDEAN 174

Query: 652  KNKKQMTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMS 831
            K  KQ  G KSA++    +TDG ++N V F +TPE+I+QIFAEKPAVR+AYL  VP+KMS
Sbjct: 175  KRSKQKPGFKSALVDIRPTTDG-RTNKVTFQITPEMIHQIFAEKPAVRRAYLDFVPKKMS 233

Query: 832  DVDFWTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTVDM 1011
            +  FW KYCRAEY  R+K                   K+D+ILA E + KI++VDPT+DM
Sbjct: 234  ETRFWEKYCRAEYLVRTKNTAAATAEAAGDEELAIFLKNDDILAKEAKLKIKRVDPTLDM 293

Query: 1012 ASDLADDYTHLPGHGILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGD 1191
             +D  DDY HLP HGI RD  +E +D D+   +RT  +D+NRHAAVVLEG++L + +  D
Sbjct: 294  EADTGDDYIHLPDHGIHRDGSKETVDADSELARRTLSQDLNRHAAVVLEGRSL-DVESTD 352

Query: 1192 TRSVAQGLVRVNKGKANTVDKLSDER-RKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQY 1368
             +++A+ L R  K   +T +   D   R  +V  MT+IEDLQ P++L +A LCIKDPR+Y
Sbjct: 353  PKTLAEALARSKKEPPSTSNVDDDNHERLMKVARMTEIEDLQAPRSLLYAPLCIKDPREY 412

Query: 1369 FDSQQANGMYAQGEKRDFRTAEHFNL--DETYDSLANAVSRVGENGLKDPIMNPQLAVKV 1542
            FDSQQAN + + G     R A   +L  +E +  L + +S V  N L  PI+   +A+KV
Sbjct: 413  FDSQQANALRSLGGSNGGRKAHSCSLSTEEVFHHLMDQMSSVKVNRLNCPIVQSDMALKV 472

Query: 1543 LDNLTHYISSTQPHKGKNAEKDVLSSLPIIEQNALKEQWKTIQELLRMFWACYPITSTFL 1722
            L+ L   IS ++    KN ++ +L  LP   ++ L + W  IQELLR FW+ YPITS  L
Sbjct: 473  LNELNEGISRSRRLNLKNPQEGLLGQLPQHTRDELMDHWTAIQELLRHFWSSYPITSAVL 532

Query: 1723 SNKVGKLKDTMAQIYEKLQSTKASAKPESRHQISLLIHPMLQALDAAFAHNEAESQKRS 1899
             NKV ++K+ M QIY+KLQ  K  A+P+ RH+IS L+ PM QALDAAF H+  + QK S
Sbjct: 533  YNKVQRVKEAMTQIYQKLQLIKELAQPDVRHEISRLVKPMTQALDAAFNHDLEQQQKSS 591


>ref|XP_004248296.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Solanum lycopersicum]
          Length = 599

 Score =  491 bits (1265), Expect = e-136
 Identities = 276/589 (46%), Positives = 381/589 (64%), Gaps = 9/589 (1%)
 Frame = +1

Query: 160  RATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFSKETAA-QA 336
            RA YK +VK PGVPGVL LT+++F F+PNDP   +  KL+V FK IK HK SKE ++ QA
Sbjct: 9    RAKYKTSVKVPGVPGVLKLTKERFYFMPNDPTLTT--KLNVEFKLIKGHKSSKECSSKQA 66

Query: 337  LLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQT--IPQQAPPDNRDVLLNV 510
            LLNL Q    +GG ++FEF +F +R+ CRD VA  +A   +      + P    D  L+ 
Sbjct: 67   LLNLTQ---AQGGNYLFEFDSFPDRDQCRDFVASAIAACGEIGKATSEKPAVPHDEQLSA 123

Query: 511  EDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELSKNKKQMTGLKSAM 690
             +M  R+++L++NS+LQ LH ELV+  +L+E EFWA R+ L+E+  +K  KQ   LK+ M
Sbjct: 124  TEMGRRIKLLQENSELQNLHRELVIAGILSETEFWAARKKLLEQSENKKPKQRVALKNDM 183

Query: 691  LADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMSDVDFWTKYCRAEY 870
             +    +DG Q+N V F+LTPE+I+QIFAEKPAVRQAYLK VP KMS+ +FWTKY RAEY
Sbjct: 184  WSVKPLSDG-QTNRVTFNLTPEVIHQIFAEKPAVRQAYLKFVPGKMSEKEFWTKYSRAEY 242

Query: 871  FYRSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTVDMASDLADDYTHLPG 1050
             + +K                   K D++L  E RRKIR+VDPT+DM +D  DDY HLP 
Sbjct: 243  LHSTKNIVAAAAEAAEDEELAVFLKQDDMLVSEARRKIRRVDPTLDMEADEGDDYMHLPD 302

Query: 1051 HGILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGDTRSVAQGLVRVNK 1230
            HG+ +   +E ++      KR+F + +N+HAAVVL+G+ + + + GDTRSVA+   R N+
Sbjct: 303  HGLPQGETKEILEPQYEPFKRSFSQYLNQHAAVVLQGRVI-DVELGDTRSVAEAFTRTNQ 361

Query: 1231 GKANTVDKLSDER----RKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQYFDSQQANGMY 1398
             +  T  ++SDE     R  +V  + +IEDLQGP+    A L IKDPR YFDSQQAN + 
Sbjct: 362  AEQAT--EVSDENAYRERVKKVSRVAEIEDLQGPRDPPVALLSIKDPRDYFDSQQANAIK 419

Query: 1399 AQGEKRDFRTAEHFNL--DETYDSLANAVSRVGENGLKDPIMNPQLAVKVLDNLTHYISS 1572
            A G+         F +  +E + SL +++S +   GL +PI++P++A+KV + L+  ISS
Sbjct: 420  ALGDAETGIRQLKFRVSKEEAFCSLKDSISEINSQGLIEPIISPEVALKVFNLLSQNISS 479

Query: 1573 TQPHKGKNAEKDVLSSLPIIEQNALKEQWKTIQELLRMFWACYPITSTFLSNKVGKLKDT 1752
            T+ H GKN  + VL  LP   +N L   W +IQELL+ FW+ YPIT+ +   KV +LKD 
Sbjct: 480  TKYHLGKNPHESVLDQLPSATKNELLLHWTSIQELLKHFWSSYPITTKYFYAKVTRLKDA 539

Query: 1753 MAQIYEKLQSTKASAKPESRHQISLLIHPMLQALDAAFAHNEAESQKRS 1899
            M+QIY KLQ  K S + + RHQ+SLL+ PMLQALDAAFAH +A+ QKRS
Sbjct: 540  MSQIYPKLQEIKESVQSDVRHQVSLLVQPMLQALDAAFAHYDADLQKRS 588


>ref|XP_002530618.1| TFIIH basal transcription factor complex subunit, putative [Ricinus
            communis] gi|223529828|gb|EEF31761.1| TFIIH basal
            transcription factor complex subunit, putative [Ricinus
            communis]
          Length = 597

 Score =  479 bits (1232), Expect = e-132
 Identities = 267/595 (44%), Positives = 366/595 (61%), Gaps = 7/595 (1%)
 Frame = +1

Query: 136  MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 315
            M + Q + R  YK ++K PG PG L LT +K  F PN+P + S  KLD++FK +  HK +
Sbjct: 1    MASKQVTKRVKYKTSLKDPGTPGRLLLTMEKLAFRPNNPNSAS--KLDMDFKYVTNHKNT 58

Query: 316  KETAAQALLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTIPQQAPPDNRD 495
            KE +A+A+LNL  +   +G  +IFEF N ++  +C+++V K L+K   T      P+   
Sbjct: 59   KEGSAKAMLNLTSN---QGVSYIFEFENHDDLRICKEIVGKALSKLGDTPKPPDAPEVPS 115

Query: 496  VLLNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELSKNKKQMTG 675
               + E++  RM +LR+N +LQKLH + V  +VLT++EFWA R+ L+  E S+  KQ  G
Sbjct: 116  DQPSTEELLLRMNLLRENLELQKLHKQFVSDRVLTDSEFWATRKKLLNGEFSRKSKQRVG 175

Query: 676  LKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMSDVDFWTKY 855
            LKS MLAD       Q+N V F+LTPEI+ +IFAEKPAV QAYL  VP KMS+ DFWTKY
Sbjct: 176  LKSVMLADSKPLIDGQTNKVTFNLTPEIVREIFAEKPAVHQAYLSLVPNKMSERDFWTKY 235

Query: 856  CRAEYFYRSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTVDMASDLADDY 1035
            CRAEY  RS+                   K D+ILA ETR+KIR VDPT+DM +D  DDY
Sbjct: 236  CRAEYLQRSRNIHAAAAEAAEDEELALFLKPDDILASETRQKIRCVDPTLDMEADQGDDY 295

Query: 1036 THLPGHGILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGDTRSVAQGL 1215
            THLP HGI+RD  ++ I+      +RT L+D+NRHAAVVLEG  + +    DT++VA  L
Sbjct: 296  THLPDHGIVRDGSKDVIESQHEPYRRTLLQDLNRHAAVVLEGTAIDDEQLQDTKAVADAL 355

Query: 1216 VRVNKGKANTVDKLSD----ERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQYFDSQQ 1383
             R  +G   T+++ +D    + R NR+ +M +IEDLQG      A LCIKDPR YFDSQQ
Sbjct: 356  ARSKRG-IKTINREADGNANQERSNRISQMMEIEDLQGSNDHHLAPLCIKDPRDYFDSQQ 414

Query: 1384 ANGMYAQGEKRDFRTAEHFNL--DETYDSLANAVSRVGENGLKDPIMNPQLAVKVLDNLT 1557
            A+ +    +      A   +L   E Y SL +++++    GL DPI+ P++A KVL  LT
Sbjct: 415  ASALKNSRDIPSGTEAARCSLSSQEAYASLRDSITQTKAMGLNDPIVKPEIATKVLSILT 474

Query: 1558 HYISSTQPHKGKNAEKDVLSSLPIIEQNALKEQWKTIQELLRMFWACYPITSTFLSNKVG 1737
            H ISST+ H GKN+ + VL  LP   +  L   W +I+ELLR +W+ YPIT+ +L  KV 
Sbjct: 475  HNISSTKYHLGKNSRESVLDRLPNTIKEELLHHWMSIEELLRHYWSSYPITTAYLYAKVS 534

Query: 1738 KLKDTMAQIYEKLQSTKASAKPESR-HQISLLIHPMLQALDAAFAHNEAESQKRS 1899
            +LKD M++I  +LQ  K S + +   H  SL I P   AL+AA  H +A+ QKRS
Sbjct: 535  RLKDAMSKIDSQLQEMKESVQSDLXFHATSLGIVP---ALEAAMQHYDADLQKRS 586


>ref|XP_004496077.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Cicer arietinum]
          Length = 586

 Score =  478 bits (1230), Expect = e-132
 Identities = 262/583 (44%), Positives = 367/583 (62%), Gaps = 3/583 (0%)
 Frame = +1

Query: 160  RATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFSKETAAQA- 336
            RA YK TVK PG PGVL LT++K  F PNDP   SN +++V+F+ IK HK +KE + +  
Sbjct: 10   RAKYKTTVKDPGTPGVLKLTQEKLVFKPNDPT--SNNRVEVDFRLIKNHKHTKEGSNKPP 67

Query: 337  LLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTIPQQAPPDNRDVLLNVED 516
             LNL        G +IFE  NF + +VCR+LV   L+K+ +      P    D  L+  +
Sbjct: 68   WLNLGHSQ----GSYIFELENFSDLHVCRELVGIALSKHVEP-----PKVVSDEQLSPAE 118

Query: 517  MECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELSKNKKQMTGLKSAMLA 696
            M  R+++L+++S LQKLH +LV    LTE+EFWA ++ L++++ S+  KQ  G K++++ 
Sbjct: 119  MTLRIKLLQEDSKLQKLHKDLVASGKLTESEFWATKKKLLDQDESRKLKQRIGFKNSLIF 178

Query: 697  DMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMSDVDFWTKYCRAEYFY 876
            D   T   + N VKF LTPEI YQIFA KPAV QA+L  VP KMS+VDFW KY +AEY +
Sbjct: 179  DTKPTSDGRINQVKFQLTPEIKYQIFALKPAVHQAFLNFVPSKMSEVDFWNKYFKAEYIH 238

Query: 877  RSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTVDMASDLADDYTHLPGHG 1056
             +K                   KDDEIL +E R+K+R+VDPT+DM +D  DDYTHLP HG
Sbjct: 239  STKNTIAAAAEAAEDEDLAVFLKDDEILENEARKKVRRVDPTLDMEADQGDDYTHLPDHG 298

Query: 1057 ILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGDTRSVAQGLVRVNKGK 1236
            I RD  +E  +      +RT L+D+NR + VVLEG+TL + D    R+VA+ L R    +
Sbjct: 299  IFRDGSKETAEAQNTFYRRTLLQDLNRQSEVVLEGKTL-DMDMEHPRTVAEVLAR----R 353

Query: 1237 ANTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQYFDSQQANGMYAQGEKR 1416
                D + +E R+NR+ +MT+IEDLQ      FA LCIKDPR YFDSQQ N + +  +  
Sbjct: 354  KQESDGVIEEERRNRISKMTQIEDLQAQDDHRFAPLCIKDPRDYFDSQQVNALKSLDDSL 413

Query: 1417 DFRTAEHFNL--DETYDSLANAVSRVGENGLKDPIMNPQLAVKVLDNLTHYISSTQPHKG 1590
              +     NL  +E Y SL  ++S++   GL DP+++P++A KVL+ LT  ISST+ H G
Sbjct: 414  AGKEQIRCNLGSEEAYGSLRESISKIKAIGLMDPLLSPEVAFKVLNGLTKNISSTKSHLG 473

Query: 1591 KNAEKDVLSSLPIIEQNALKEQWKTIQELLRMFWACYPITSTFLSNKVGKLKDTMAQIYE 1770
            K++++ VL  LP   +  L + W   QELLR FW+ YP+T+  L NK  ++KD ++QIY 
Sbjct: 474  KSSQESVLDILPNTTKEKLLDHWVCSQELLRHFWSSYPVTTQNLVNKTKRMKDAISQIYS 533

Query: 1771 KLQSTKASAKPESRHQISLLIHPMLQALDAAFAHNEAESQKRS 1899
            KL+  K SAK + RHQ+SL++HPM QALDAA  H +A+ +KR+
Sbjct: 534  KLEEIKVSAKSDLRHQVSLVVHPMQQALDAALLHYDADVRKRN 576


>ref|XP_003591640.1| General transcription factor IIH subunit [Medicago truncatula]
            gi|355480688|gb|AES61891.1| General transcription factor
            IIH subunit [Medicago truncatula]
          Length = 586

 Score =  473 bits (1216), Expect = e-130
 Identities = 261/583 (44%), Positives = 359/583 (61%), Gaps = 3/583 (0%)
 Frame = +1

Query: 160  RATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFSKETAAQA- 336
            RA YK TVK PG PGV+ LT QK  F PNDP   SN KLDV+F+ IK+ K +KE + +  
Sbjct: 11   RAKYKSTVKDPGTPGVIKLTRQKVVFKPNDPT--SNNKLDVDFRLIKSQKNTKEGSTKPP 68

Query: 337  LLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTIPQQAPPDNRDVLLNVED 516
             LNL+       G +IFEF +F + +VCR+  A I++K     P +AP    D  L+  +
Sbjct: 69   WLNLVHSQ----GSYIFEFESFSDLHVCREFAAGIISK-----PVEAPKVVSDEQLSTAE 119

Query: 517  MECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELSKNKKQMTGLKSAMLA 696
            M  RM++L ++S L+K+H ELVM   LTE+EFWA ++ L++++ S+  KQ  G K++++ 
Sbjct: 120  MTLRMKLLGEDSKLKKIHMELVMSDKLTESEFWATKKKLLDQDESRKLKQRIGFKNSLIF 179

Query: 697  DMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMSDVDFWTKYCRAEYFY 876
            D   T   + N VKF LTPEI YQIFA KPAV QA+L  VP KMS+VDFW KY +AEY +
Sbjct: 180  DTKPTSDGRINQVKFQLTPEIKYQIFALKPAVHQAFLNFVPSKMSEVDFWNKYFKAEYLH 239

Query: 877  RSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTVDMASDLADDYTHLPGHG 1056
             +K                   KDDEIL +E R+K+R+VDPT+DM +D  DDYTHLP HG
Sbjct: 240  STKNAIAAAAEAAEDEDLAVFLKDDEILENEARKKVRRVDPTLDMEADQGDDYTHLPDHG 299

Query: 1057 ILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGDTRSVAQGLVRVNKGK 1236
            I RD  +E  +      +RT L+D+NR + VVLEG+TL + D    R+  + L R     
Sbjct: 300  IFRDGSKETSEAQNTLYRRTLLQDLNRQSEVVLEGKTL-DIDMEHPRTAVEALARRKHES 358

Query: 1237 ANTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQYFDSQQANGMYAQGEKR 1416
               V     E R+NR+ +M +IEDLQ      FA LCIKDPR YFDSQQAN +    +  
Sbjct: 359  DGVV-----EERRNRISKMAQIEDLQAQDDHPFAPLCIKDPRDYFDSQQANAVKTLDDSL 413

Query: 1417 DFRTAEHFNL--DETYDSLANAVSRVGENGLKDPIMNPQLAVKVLDNLTHYISSTQPHKG 1590
              +     NL  +E Y SL  ++S +   GL+DP+++ ++A KVL  LT  ISST+ + G
Sbjct: 414  SGKEKIRCNLGSEEAYGSLRESISNIKTMGLRDPLLSHEVAFKVLSELTKNISSTKSNLG 473

Query: 1591 KNAEKDVLSSLPIIEQNALKEQWKTIQELLRMFWACYPITSTFLSNKVGKLKDTMAQIYE 1770
            K++++ VL  LP   +  L + W   QELLR FW+ YP+T   L +K  +LKD ++QIY 
Sbjct: 474  KSSQESVLDILPNTTKEKLLDHWVCSQELLRHFWSSYPVTKQSLVDKARRLKDAISQIYS 533

Query: 1771 KLQSTKASAKPESRHQISLLIHPMLQALDAAFAHNEAESQKRS 1899
            KL+  K SAK + RHQ+SL++HPM QALDAA  H +A+  +R+
Sbjct: 534  KLEEIKVSAKSDLRHQVSLVVHPMQQALDAALLHYDADITRRN 576


>ref|XP_006452718.1| hypothetical protein CICLE_v10007802mg [Citrus clementina]
            gi|557555944|gb|ESR65958.1| hypothetical protein
            CICLE_v10007802mg [Citrus clementina]
          Length = 564

 Score =  472 bits (1215), Expect = e-130
 Identities = 257/562 (45%), Positives = 362/562 (64%), Gaps = 7/562 (1%)
 Frame = +1

Query: 235  FIPNDPRAPSNMKLDVNFKNIKTHKFSKETAAQA-LLNLMQDPAIKGGGFIFEFVNFEER 411
            F+P++    S  KL V FK+I+ HK++KE + +  L+NL      +GG +IFEF ++ + 
Sbjct: 2    FMPDNRN--SGAKLVVEFKSIQGHKYTKEGSNKPPLINLAN---AQGGSYIFEFDSYSDL 56

Query: 412  NVCRDLVAKILAKYQQTIPQQAPPDNR----DVLLNVEDMECRMQILRKNSDLQKLHYEL 579
            +VCRD V+K+L K ++T P  A   +     D  L+ E+M+ R+++L++NS+LQKLH + 
Sbjct: 57   HVCRDFVSKVLEKSKET-PNAALEKSAVKLPDEQLSEEEMQLRIKLLQENSELQKLHRQF 115

Query: 580  VMGKVLTEAEFWAGRQHLIEEELSKNKKQMTGLKSAMLADMHSTDGSQSNSVKFDLTPEI 759
            V G +LTEAEFWA R+ L++ + SK  KQ  G KSAM++D+      ++N V F LTPEI
Sbjct: 116  VGGNILTEAEFWAARKKLLDRDPSKKSKQRVGFKSAMISDIRPATDGRTNKVTFSLTPEI 175

Query: 760  IYQIFAEKPAVRQAYLKNVPQKMSDVDFWTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXX 939
            I QIFAEKPAV +A+L  VP KM++++FWTKYCRAEY  R+K                  
Sbjct: 176  ILQIFAEKPAVHRAFLNFVPNKMTEMEFWTKYCRAEYLSRTKNYHAVVAEAAEDEELAVF 235

Query: 940  XKDDEILADETRRKIRKVDPTVDMASDLADDYTHLPGHGILRDPGREHIDEDANQPKRTF 1119
             K+D+ILA+E R+KIR+VDPT+DM +D  DDYTHLP HGI RD  +E  +  +   +RT 
Sbjct: 236  LKEDDILANEVRKKIRRVDPTLDMEADEGDDYTHLPDHGIFRDGTKESNELQSEHYRRTL 295

Query: 1120 LKDINRHAAVVLEGQTLSESDFGDTRSVAQGLVRVNKGKANTVDKLSDERRKNRVHEMTK 1299
            L+D+NRHAAVVLEG+T+       TR++A+ L R  +G     D  ++E R +R   + +
Sbjct: 296  LQDLNRHAAVVLEGRTIDVEREDSTRALAEALARSKRGNEG-ADNNANEERLDRTPRVAE 354

Query: 1300 IEDLQGPQTLSFASLCIKDPRQYFDSQQANGMYAQGEKRDFRTAEHFNL--DETYDSLAN 1473
            IEDLQ P  L  A L IKD R+YFDSQQAN + A    RD + +   +L   E Y S+ +
Sbjct: 355  IEDLQAPHCLPLAPLSIKDAREYFDSQQANTLKA---SRDSQASMKCSLSRQEAYGSVRD 411

Query: 1474 AVSRVGENGLKDPIMNPQLAVKVLDNLTHYISSTQPHKGKNAEKDVLSSLPIIEQNALKE 1653
            A+S + + GL DPI+NP++A+KV   LTH ISS + H GKN  + VL  LP   +  L  
Sbjct: 412  AISEIKDMGLSDPIVNPEVALKVYSGLTHNISSIKYHLGKNPRETVLDRLPSATKEKLLY 471

Query: 1654 QWKTIQELLRMFWACYPITSTFLSNKVGKLKDTMAQIYEKLQSTKASAKPESRHQISLLI 1833
             W +IQELL+ FW+ YPIT+ +L +KV +LKD ++ IY +L+  K S   + RHQ+SLL+
Sbjct: 472  HWMSIQELLKHFWSSYPITTPYLYSKVNRLKDALSNIYPQLEEMKESLPADLRHQVSLLV 531

Query: 1834 HPMLQALDAAFAHNEAESQKRS 1899
             PM QALDAA  H +A+ QKRS
Sbjct: 532  RPMQQALDAAIQHYDADLQKRS 553