BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00008644
         (2670 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX19931.1| viral replicase [Nandina mosaic virus]                1504   0.0  
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1496   0.0  
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1496   0.0  
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1494   0.0  
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1493   0.0  
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1491   0.0  
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1489   0.0  
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1487   0.0  
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...  1408   0.0  
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...  1203   0.0  
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a...  1029   0.0  
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   492   e-136
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a...   466   e-128
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]             453   e-124
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5...   453   e-124
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2...   434   e-118
gb|ACS28228.1| replicase [Alternanthera mosaic virus]                 419   e-114
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai...   419   e-114
ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548...   418   e-114
gb|ACS28233.1| replicase [Alternanthera mosaic virus]                 418   e-114

>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score = 1504 bits (3893), Expect = 0.0
 Identities = 743/889 (83%), Positives = 789/889 (88%)
 Frame = -3

Query: 2668 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 2489
            YRTLKRELAQTRH+NPFAQ+P+AADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH
Sbjct: 25   YRTLKRELAQTRHTNPFAQSPDAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 84

Query: 2488 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNI 2309
            YLPKENPVSFLFMKPAKLR+FHRGPTHGDFFLNAHVEPKDVPRYPQDTV++RLENI T+I
Sbjct: 85   YLPKENPVSFLFMKPAKLRYFHRGPTHGDFFLNAHVEPKDVPRYPQDTVLNRLENISTSI 144

Query: 2308 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 2129
            AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM
Sbjct: 145  AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 204

Query: 2128 YIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPER 1949
            YIPGGHAGASYFHKYDQLEWLT+GHL APNQPT+TAQRLETKGANHLFIFQRGNYLTPER
Sbjct: 205  YIPGGHAGASYFHKYDQLEWLTIGHLQAPNQPTVTAQRLETKGANHLFIFQRGNYLTPER 264

Query: 1948 RTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 1769
            RTFTTT+ YVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST
Sbjct: 265  RTFTTTDPYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 324

Query: 1768 KELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGR 1589
            KELQHYQPSEITLLVNYFEF ASLDSHTCFEDVLSGNL+QRLLRPLR+D+QR+L FFRGR
Sbjct: 325  KELQHYQPSEITLLVNYFEFAASLDSHTCFEDVLSGNLLQRLLRPLRADMQRILHFFRGR 384

Query: 1588 PSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXX 1409
            PSFVKLIKALDWQPITLEFPVR VNTRLRGPPGF +PFT+P PVNPDDA+T  +FREF  
Sbjct: 385  PSFVKLIKALDWQPITLEFPVRRVNTRLRGPPGFLSPFTRPQPVNPDDAETTESFREFIQ 444

Query: 1408 XXXXXXXXTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITX 1229
                    T+ + LE S E+  +HTSLKV    LS EQL ALHELGN+R GGP+LPK   
Sbjct: 445  PLNPSPTATVTEMLENSTESDVTHTSLKVVPQSLSPEQLSALHELGNSRCGGPMLPK--- 501

Query: 1228 XXXXXXXXXXXXXXXXPTQASASLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALE 1049
                             T  S+ L +  H    P        P  +   K   +GFEALE
Sbjct: 502  ------------RSSNHTHTSSDLLRRRH----PRQQRSTNPPMGSLAAKAKRIGFEALE 545

Query: 1048 IQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARA 869
            IQTDPSTG+ IMPI D R+LP+A +P HW+ P   K++ TLR LNRFPTPW PDRARARA
Sbjct: 546  IQTDPSTGQPIMPITDTRELPRAIMPAHWDSPQFEKIIATLRNLNRFPTPWSPDRARARA 605

Query: 868  FTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQN 689
            FTSDVKNSRTGKALHRE+QTWKETQTMLT+N   + AISVIHGAGGSGKSQALQTLLRQN
Sbjct: 606  FTSDVKNSRTGKALHRESQTWKETQTMLTDNAEIHTAISVIHGAGGSGKSQALQTLLRQN 665

Query: 688  PELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEA 509
            P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV S+ PVVIFDDYGKLPQGYIEA
Sbjct: 666  PDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVSSRGPVVIFDDYGKLPQGYIEA 725

Query: 508  FAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLA 329
            FAMTHA+LEL+ILTGDPRQSTHHEANEEALISKL+PATT FSELSRYYINATHRNSKFLA
Sbjct: 726  FAMTHANLELIILTGDPRQSTHHEANEEALISKLSPATTTFSELSRYYINATHRNSKFLA 785

Query: 328  NKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQ 149
            NKLG+YSSN CPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQ
Sbjct: 786  NKLGIYSSNHCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQ 845

Query: 148  ILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLK 2
            ILLDNDTTMCTKEVLYTALSRAVDS HFVNSNAQSSAFWEKLEATPYLK
Sbjct: 846  ILLDNDTTMCTKEVLYTALSRAVDSNHFVNSNAQSSAFWEKLEATPYLK 894


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1496 bits (3874), Expect = 0.0
 Identities = 742/889 (83%), Positives = 783/889 (88%)
 Frame = -3

Query: 2668 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 2489
            YR LKRELAQTRH+NPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH
Sbjct: 25   YRHLKRELAQTRHNNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 84

Query: 2488 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNI 2309
            YLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+I
Sbjct: 85   YLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSI 144

Query: 2308 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 2129
            AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM
Sbjct: 145  AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 204

Query: 2128 YIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPER 1949
            YIPGGHAGASYFH Y QLEWLTVGHLT P Q T+TAQRLETKGANHLFIFQRGNYLTPER
Sbjct: 205  YIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPER 264

Query: 1948 RTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 1769
            RTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST
Sbjct: 265  RTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 324

Query: 1768 KELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGR 1589
            KELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGR
Sbjct: 325  KELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGR 384

Query: 1588 PSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXX 1409
            PSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVNPDDA+T ++F+ F  
Sbjct: 385  PSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQ 444

Query: 1408 XXXXXXXXTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITX 1229
                     +  +L   +E    H SL +  + L   QL ALHELGN R GGPLLPK   
Sbjct: 445  ATAT-----VEXTLAQQSETPDEHQSLSLKCSTLPEHQLWALHELGNARCGGPLLPK--G 497

Query: 1228 XXXXXXXXXXXXXXXXPTQASASLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALE 1049
                            P       ++   + + P   DP+TLPWVAWLPKLNALGFEALE
Sbjct: 498  PAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALE 557

Query: 1048 IQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARA 869
            IQTDPSTGE+IMPI D R+LP+A    HW  P + ++L+TLRGLNR+PTPW PDRARA+A
Sbjct: 558  IQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKA 617

Query: 868  FTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQN 689
            FTSDVKNSRTGKALHRE+Q WKETQTMLTEN   NLAISVIHGAGGSGKSQALQTLLRQ 
Sbjct: 618  FTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQY 677

Query: 688  PELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEA 509
            P LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EA
Sbjct: 678  PNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEA 737

Query: 508  FAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLA 329
            FAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLA
Sbjct: 738  FAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLA 797

Query: 328  NKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQ 149
            NKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQ
Sbjct: 798  NKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQ 857

Query: 148  ILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLK 2
            ILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLK
Sbjct: 858  ILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLK 906


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1496 bits (3873), Expect = 0.0
 Identities = 742/889 (83%), Positives = 783/889 (88%)
 Frame = -3

Query: 2668 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 2489
            YR LKRELAQTRH+NPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH
Sbjct: 25   YRHLKRELAQTRHNNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 84

Query: 2488 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNI 2309
            YLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+I
Sbjct: 85   YLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSI 144

Query: 2308 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 2129
            AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM
Sbjct: 145  AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 204

Query: 2128 YIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPER 1949
            YIPGGHAGASYFH Y QLEWLTVGHLT P Q T+TAQRLETKGANHLFIFQRGNYLTPER
Sbjct: 205  YIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPER 264

Query: 1948 RTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 1769
            RTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST
Sbjct: 265  RTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 324

Query: 1768 KELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGR 1589
            KELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGR
Sbjct: 325  KELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGR 384

Query: 1588 PSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXX 1409
            PSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVNPDDA+T ++F+ F  
Sbjct: 385  PSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQ 444

Query: 1408 XXXXXXXXTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITX 1229
                     +  +L   +E    H SL +  + L   QL ALHELGN R GGPLLPK   
Sbjct: 445  ATAT-----VEATLAQQSETPDEHQSLSLKCSTLPEHQLWALHELGNARCGGPLLPK--G 497

Query: 1228 XXXXXXXXXXXXXXXXPTQASASLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALE 1049
                            P       ++   + + P   DP+TLPWVAWLPKLNALGFEALE
Sbjct: 498  PAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALE 557

Query: 1048 IQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARA 869
            IQTDPSTGE+IMPI D R+LP+A    HW  P + ++L+TLRGLNR+PTPW PDRARA+A
Sbjct: 558  IQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKA 617

Query: 868  FTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQN 689
            FTSDVKNSRTGKALHRE+Q WKETQTMLTEN   NLAISVIHGAGGSGKSQALQTLLRQ 
Sbjct: 618  FTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQY 677

Query: 688  PELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEA 509
            P LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EA
Sbjct: 678  PNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEA 737

Query: 508  FAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLA 329
            FAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLA
Sbjct: 738  FAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLA 797

Query: 328  NKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQ 149
            NKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQ
Sbjct: 798  NKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQ 857

Query: 148  ILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLK 2
            ILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLK
Sbjct: 858  ILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLK 906


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1494 bits (3867), Expect = 0.0
 Identities = 741/889 (83%), Positives = 782/889 (87%)
 Frame = -3

Query: 2668 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 2489
            YR LKRELAQTRH+NPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH
Sbjct: 25   YRHLKRELAQTRHNNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 84

Query: 2488 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNI 2309
            YLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+I
Sbjct: 85   YLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSI 144

Query: 2308 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 2129
            AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM
Sbjct: 145  AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 204

Query: 2128 YIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPER 1949
            YIPGGHAGASYFH Y QLEWLTVGHLT P Q T+TAQRLETKGANHLFIFQRGNYLTPER
Sbjct: 205  YIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPER 264

Query: 1948 RTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 1769
            RTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST
Sbjct: 265  RTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 324

Query: 1768 KELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGR 1589
            KELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGR
Sbjct: 325  KELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGR 384

Query: 1588 PSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXX 1409
            PSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVNPDDA+T ++F+ F  
Sbjct: 385  PSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQ 444

Query: 1408 XXXXXXXXTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITX 1229
                     +  +L   +E    H SL +  + L   QL ALHELGN R G PLLPK   
Sbjct: 445  ATAT-----VEATLAQQSETPDEHQSLSLKCSTLPEHQLWALHELGNARCGAPLLPK--G 497

Query: 1228 XXXXXXXXXXXXXXXXPTQASASLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALE 1049
                            P       ++   + + P   DP+TLPWVAWLPKLNALGFEALE
Sbjct: 498  PAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALE 557

Query: 1048 IQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARA 869
            IQTDPSTGE+IMPI D R+LP+A    HW  P + ++L+TLRGLNR+PTPW PDRARA+A
Sbjct: 558  IQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKA 617

Query: 868  FTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQN 689
            FTSDVKNSRTGKALHRE+Q WKETQTMLTEN   NLAISVIHGAGGSGKSQALQTLLRQ 
Sbjct: 618  FTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQY 677

Query: 688  PELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEA 509
            P LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EA
Sbjct: 678  PNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEA 737

Query: 508  FAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLA 329
            FAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLA
Sbjct: 738  FAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLA 797

Query: 328  NKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQ 149
            NKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQ
Sbjct: 798  NKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQ 857

Query: 148  ILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLK 2
            ILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLK
Sbjct: 858  ILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLK 906


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1493 bits (3865), Expect = 0.0
 Identities = 741/889 (83%), Positives = 781/889 (87%)
 Frame = -3

Query: 2668 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 2489
            YR LKRELAQTRH+NPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH
Sbjct: 25   YRHLKRELAQTRHNNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 84

Query: 2488 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNI 2309
            YLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+I
Sbjct: 85   YLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSI 144

Query: 2308 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 2129
            AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM
Sbjct: 145  AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 204

Query: 2128 YIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPER 1949
            YIPGGHAGASYFH Y QLEWLTVGHLT P Q T+TAQRLETKGANHLFIFQRGNYLTPER
Sbjct: 205  YIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPER 264

Query: 1948 RTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 1769
            RTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST
Sbjct: 265  RTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 324

Query: 1768 KELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGR 1589
            KELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGR
Sbjct: 325  KELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGR 384

Query: 1588 PSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXX 1409
            PSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVNPDDA+T ++F+ F  
Sbjct: 385  PSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQ 444

Query: 1408 XXXXXXXXTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITX 1229
                     +  +L   +E    H SL +    L   QL ALHELGN R GGPLLPK   
Sbjct: 445  ATAT-----VEATLAQQSETPDEHQSLSLKCPTLPEHQLWALHELGNARCGGPLLPK--G 497

Query: 1228 XXXXXXXXXXXXXXXXPTQASASLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALE 1049
                            P       ++   + + P   DP+TLPWVAWLPKLNALGFEALE
Sbjct: 498  PAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALE 557

Query: 1048 IQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARA 869
            IQTDPSTGE+IMPI D R+LP+A    HW  P + ++L+TLR LNR+PTPW PDRARA+A
Sbjct: 558  IQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRSLNRYPTPWNPDRARAKA 617

Query: 868  FTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQN 689
            FTSDVKNSRTGKALHRE+Q WKETQTMLTEN   NLAISVIHGAGGSGKSQALQTLLRQ 
Sbjct: 618  FTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQY 677

Query: 688  PELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEA 509
            P LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EA
Sbjct: 678  PNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEA 737

Query: 508  FAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLA 329
            FAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLA
Sbjct: 738  FAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLA 797

Query: 328  NKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQ 149
            NKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQ
Sbjct: 798  NKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQ 857

Query: 148  ILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLK 2
            ILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLK
Sbjct: 858  ILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLK 906


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1491 bits (3859), Expect = 0.0
 Identities = 740/889 (83%), Positives = 780/889 (87%)
 Frame = -3

Query: 2668 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 2489
            YR LKRELAQTRH+NPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH
Sbjct: 25   YRHLKRELAQTRHNNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 84

Query: 2488 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNI 2309
            YLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+I
Sbjct: 85   YLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSI 144

Query: 2308 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 2129
            AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM
Sbjct: 145  AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 204

Query: 2128 YIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPER 1949
            YIPGGHAGASYFH Y QLEWLTVGHLT P Q T+TAQRLETKGANHLFIFQRGNYLTPER
Sbjct: 205  YIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPER 264

Query: 1948 RTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 1769
            RTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST
Sbjct: 265  RTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 324

Query: 1768 KELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGR 1589
            KELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGR
Sbjct: 325  KELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGR 384

Query: 1588 PSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXX 1409
            PSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVNPDDA+T ++F+ F  
Sbjct: 385  PSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQ 444

Query: 1408 XXXXXXXXTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITX 1229
                     +  +L   +E    H SL +    L   QL ALHELGN R GGPLLPK   
Sbjct: 445  ATAT-----VEATLAQQSETPDEHQSLSLKCPTLPEHQLWALHELGNARCGGPLLPK--G 497

Query: 1228 XXXXXXXXXXXXXXXXPTQASASLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALE 1049
                            P       ++   + + P   DP+TLPWVAWLPKLNALGFEALE
Sbjct: 498  PAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALE 557

Query: 1048 IQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARA 869
            IQTDPSTGE+IMPI D R+LP+A    HW  P + ++L+TLR LNR+PTPW PDRARA+A
Sbjct: 558  IQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRSLNRYPTPWNPDRARAKA 617

Query: 868  FTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQN 689
            FTSDVKNSRTGKALHRE+Q WKETQTMLTEN   NLAISVIHGAGGSGKSQALQTLLRQ 
Sbjct: 618  FTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQY 677

Query: 688  PELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEA 509
            P LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EA
Sbjct: 678  PNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEA 737

Query: 508  FAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLA 329
            FAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSK LA
Sbjct: 738  FAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKLLA 797

Query: 328  NKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQ 149
            NKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQ
Sbjct: 798  NKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQ 857

Query: 148  ILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLK 2
            ILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLK
Sbjct: 858  ILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLK 906


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1489 bits (3856), Expect = 0.0
 Identities = 741/894 (82%), Positives = 780/894 (87%), Gaps = 5/894 (0%)
 Frame = -3

Query: 2668 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 2489
            YR LKRELAQTRH+NPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH
Sbjct: 25   YRHLKRELAQTRHNNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 84

Query: 2488 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNI 2309
            YLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+I
Sbjct: 85   YLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSI 144

Query: 2308 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 2129
            AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM
Sbjct: 145  AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 204

Query: 2128 YIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPER 1949
            YIPGGHAGASYFHKY QLEWLTVGHLT P Q T+TAQRLETKGANHLFIFQRGNYLTPER
Sbjct: 205  YIPGGHAGASYFHKYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPER 264

Query: 1948 RTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 1769
            RTFTTTEHYVTVPD+FLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST
Sbjct: 265  RTFTTTEHYVTVPDVFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 324

Query: 1768 KELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGR 1589
            KELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPL+S I ++L FFRGR
Sbjct: 325  KELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLKSGITQLLNFFRGR 384

Query: 1588 PSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXX 1409
            PSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVNPDDA+T ++F+ F  
Sbjct: 385  PSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQ 444

Query: 1408 XXXXXXXXTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITX 1229
                        +LE  AE    H SL +    L   QL ALHELGNTR GGPLLPK   
Sbjct: 445  ATITAEA-----ALEQQAETPDEHQSLSLKCPTLPEHQLWALHELGNTRCGGPLLPK--- 496

Query: 1228 XXXXXXXXXXXXXXXXPTQASASLN-----QGDHTDEAPVNSDPATLPWVAWLPKLNALG 1064
                               A  S N     +   T + P   DP TLPWVAWLPKLNALG
Sbjct: 497  ----GPAKLTTVEPCPDLPAENSANPEPPRKTTQTLDLPHPEDPTTLPWVAWLPKLNALG 552

Query: 1063 FEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDR 884
            FEALEIQTDPSTGE+IMPI D R+LP+A    HW  P + ++++TLR  NR+PTPW PDR
Sbjct: 553  FEALEIQTDPSTGEMIMPITDTRELPRAEGHAHWQGPDMERIISTLRSFNRYPTPWNPDR 612

Query: 883  ARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQT 704
            +RA+AFTSDVKNSRTGKALHRE+Q WKETQTML EN   NLAISVIHGAGGSGKSQALQT
Sbjct: 613  SRAKAFTSDVKNSRTGKALHRESQVWKETQTMLAENSQTNLAISVIHGAGGSGKSQALQT 672

Query: 703  LLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQ 524
            LLRQ P LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQ
Sbjct: 673  LLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQ 732

Query: 523  GYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRN 344
            GY+EAFA+THASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRN
Sbjct: 733  GYLEAFALTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRN 792

Query: 343  SKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGIT 164
            SKFLANKLGVYSSN CPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGIT
Sbjct: 793  SKFLANKLGVYSSNPCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGIT 852

Query: 163  APRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLK 2
            APRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLK
Sbjct: 853  APRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLK 906


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1487 bits (3850), Expect = 0.0
 Identities = 738/889 (83%), Positives = 780/889 (87%)
 Frame = -3

Query: 2668 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 2489
            YR LKRELAQTRH+NPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH
Sbjct: 25   YRHLKRELAQTRHNNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 84

Query: 2488 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNI 2309
            YLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+I
Sbjct: 85   YLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSI 144

Query: 2308 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 2129
            AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM
Sbjct: 145  AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 204

Query: 2128 YIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPER 1949
            YIPGGHAGASYFH Y QLEWLTVGHLT P Q T+TAQRLETKGANHLFIFQRGNYLTPER
Sbjct: 205  YIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPER 264

Query: 1948 RTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 1769
            RTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST
Sbjct: 265  RTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 324

Query: 1768 KELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGR 1589
            KELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGR
Sbjct: 325  KELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGR 384

Query: 1588 PSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXX 1409
            PSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVNPDDA+T ++F+ F  
Sbjct: 385  PSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQ 444

Query: 1408 XXXXXXXXTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITX 1229
                     +  +L   +E    H SL +    L   QL ALHELGN R GGPLLPK   
Sbjct: 445  ATAT-----VEATLAQQSETPDEHQSLSLKCPTLPEHQLWALHELGNARCGGPLLPK--G 497

Query: 1228 XXXXXXXXXXXXXXXXPTQASASLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALE 1049
                            P       ++   + + P   DP+TLPWVAWLPKLNALGFEALE
Sbjct: 498  PAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALE 557

Query: 1048 IQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARA 869
            IQTDPSTGE+IMPI D R+LP+A    HW  P ++++L+TLR LNR+PTPW PDRARA+A
Sbjct: 558  IQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMARILSTLRSLNRYPTPWNPDRARAKA 617

Query: 868  FTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQN 689
            FTSDVKNSRTGKALHRE+Q WKETQ MLTEN   NLAISVIHGAGGSGKSQALQTLLRQ 
Sbjct: 618  FTSDVKNSRTGKALHRESQVWKETQAMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQY 677

Query: 688  PELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEA 509
            P LPIEVVLPTNELRLDW KKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EA
Sbjct: 678  PNLPIEVVLPTNELRLDWPKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEA 737

Query: 508  FAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLA 329
            FAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLA
Sbjct: 738  FAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLA 797

Query: 328  NKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQ 149
            NKLGVYSSNSCPLKVTYGFQP+PG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQ
Sbjct: 798  NKLGVYSSNSCPLKVTYGFQPRPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQ 857

Query: 148  ILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLK 2
            ILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLK
Sbjct: 858  ILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLK 906


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
            gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
            replication protein; AltName: Full=156 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
            [Plantago asiatica mosaic virus]
          Length = 1385

 Score = 1408 bits (3644), Expect = 0.0
 Identities = 702/889 (78%), Positives = 756/889 (85%)
 Frame = -3

Query: 2668 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 2489
            YR LKRELAQTRH+NPFAQ+PEAADALEALGINSHPYAIT HTHAAAKAIESDLYEVVSH
Sbjct: 25   YRVLKRELAQTRHTNPFAQSPEAADALEALGINSHPYAITSHTHAAAKAIESDLYEVVSH 84

Query: 2488 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNI 2309
            YLPKENPVSFLFMKPAKLRFFHRGPTHGD FLNAHVEPKDVPRYPQ+T+I+RL +IPT I
Sbjct: 85   YLPKENPVSFLFMKPAKLRFFHRGPTHGDHFLNAHVEPKDVPRYPQETIINRLADIPTQI 144

Query: 2308 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 2129
            AFMGDTLHFLSPSF+TALFAHSP+LQTLYATLVLPPE     RSLYPQIYTLTYSEDGFM
Sbjct: 145  AFMGDTLHFLSPSFLTALFAHSPRLQTLYATLVLPPEPSTS-RSLYPQIYTLTYSEDGFM 203

Query: 2128 YIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPER 1949
            YIPGGHAGASYFHKYDQLEWLTVGHLTAP  PT+TAQRLETKGANHLFIFQRGNY+TPER
Sbjct: 204  YIPGGHAGASYFHKYDQLEWLTVGHLTAPGCPTVTAQRLETKGANHLFIFQRGNYITPER 263

Query: 1948 RTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 1769
            RTF T + YVTVP IFLPE YNCRTPISKT MMQMFFYIKS KEA+      + +QLIST
Sbjct: 264  RTFATNDQYVTVPHIFLPENYNCRTPISKTTMMQMFFYIKSGKEAQREGHLGQVQQLIST 323

Query: 1768 KELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGR 1589
            KELQHYQPSEITLLVNYFEFTA+LDSHTCFEDV    L  +        I R+LQFFRGR
Sbjct: 324  KELQHYQPSEITLLVNYFEFTATLDSHTCFEDV-PPKLAPKTTPAPPLGISRILQFFRGR 382

Query: 1588 PSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXX 1409
            PSFVKLIKALDWQPITLEFPVR V T +RGPPGF NPFT+P PVNP+DAD    F++F  
Sbjct: 383  PSFVKLIKALDWQPITLEFPVRDVRTTVRGPPGFKNPFTQPQPVNPEDADISSRFQDFSR 442

Query: 1408 XXXXXXXXTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITX 1229
                    T+   LE SAE+   HT LKV  + LS  QL A+H LG++R GGPLLP++T 
Sbjct: 443  ATNSTPKPTVEAVLEASAESPDHHTQLKVLCSALSEGQLEAIHALGHSRCGGPLLPELTA 502

Query: 1228 XXXXXXXXXXXXXXXXPTQASASLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALE 1049
                             +QAS + +     D  P   +P TLPWVAWLPKLNALGFEALE
Sbjct: 503  KSTPVEQCPDLPPCPTKSQASPASSNPSGPDAQPTAQNPETLPWVAWLPKLNALGFEALE 562

Query: 1048 IQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARA 869
            +Q DPSTGE+IMPI D ++LP+ATLP HW    L ++L+TLR LNRFPTPW PDR RARA
Sbjct: 563  VQHDPSTGEMIMPITDTQELPRATLPAHWQGHNLERILSTLRSLNRFPTPWSPDRTRARA 622

Query: 868  FTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQN 689
            FTSDVKNSRTGKALHRE+QTWKETQTMLTEN    LAISVIHGAGGSGKSQALQTLLRQ+
Sbjct: 623  FTSDVKNSRTGKALHRESQTWKETQTMLTENTQTELAISVIHGAGGSGKSQALQTLLRQD 682

Query: 688  PELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEA 509
              LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV S SPVVIFDDYGKLPQGY+EA
Sbjct: 683  HSLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVSSHSPVVIFDDYGKLPQGYLEA 742

Query: 508  FAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLA 329
            FA+THA+LELVILTGDPRQSTHHE+NEEALISKL PATTI+S  SRYYINAT RNSKFLA
Sbjct: 743  FALTHANLELVILTGDPRQSTHHESNEEALISKLPPATTIYSAFSRYYINATLRNSKFLA 802

Query: 328  NKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQ 149
            NKLGVYS+NSCPL VTYGFQP PG+HLLVPSLMKKAAFTDAGHKVS+YAGCQGITAP+VQ
Sbjct: 803  NKLGVYSANSCPLNVTYGFQPLPGLHLLVPSLMKKAAFTDAGHKVSSYAGCQGITAPKVQ 862

Query: 148  ILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLK 2
            ILLDNDTTMCTKEVLYTALSRAVDSIHFVN+NAQSSAFWEKLEATPYLK
Sbjct: 863  ILLDNDTTMCTKEVLYTALSRAVDSIHFVNTNAQSSAFWEKLEATPYLK 911


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
            gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
            [Tulip virus X]
          Length = 1361

 Score = 1203 bits (3112), Expect = 0.0
 Identities = 603/893 (67%), Positives = 689/893 (77%), Gaps = 4/893 (0%)
 Frame = -3

Query: 2668 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 2489
            YR +K+EL  TRHSNPFAQ+P AAD LE LGINSHP AITPHTHAAAKAIESDLYEV SH
Sbjct: 25   YRVMKKELTATRHSNPFAQSPAAADTLELLGINSHPLAITPHTHAAAKAIESDLYEVTSH 84

Query: 2488 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNI 2309
            YLPKENPV+FLFMKP+KLR+FHRGP H D FLNA++EPKDVPRYP DTVI  +  I T +
Sbjct: 85   YLPKENPVTFLFMKPSKLRYFHRGPQHSDIFLNAYIEPKDVPRYPTDTVIENISEITTPL 144

Query: 2308 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 2129
            AFMGDTLHFL PSF+T+LFA SPKLQTLYAT+VLPPEALYRLRSLYP++YTLTYS+DGFM
Sbjct: 145  AFMGDTLHFLEPSFITSLFARSPKLQTLYATMVLPPEALYRLRSLYPEVYTLTYSDDGFM 204

Query: 2128 YIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPER 1949
            YIPGGHAGASY+HKYDQL+WLT G+L +    T+TAQRLETKGANHLFIFQRG YLTPER
Sbjct: 205  YIPGGHAGASYYHKYDQLQWLTAGYLIS-ESTTVTAQRLETKGANHLFIFQRGRYLTPER 263

Query: 1948 RTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 1769
            RTFTT   YVTVP+IFLP   N RTPI+KT+ MQ+FFYIKSVKE +ERD+WAKFRQLIST
Sbjct: 264  RTFTTATSYVTVPEIFLPSSANARTPITKTLAMQIFFYIKSVKECRERDLWAKFRQLIST 323

Query: 1768 KELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGR 1589
            KELQH+QP E TLLVNYF+F A+LDS TC ED+LSG+L+ RLLRP R + Q +++FF+G 
Sbjct: 324  KELQHFQPDEATLLVNYFDFVANLDSATCHEDILSGSLLTRLLRPARVNWQALVRFFKGS 383

Query: 1588 PSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXX 1409
            P   KLIKAL WQP+ LEF V TV    R PPGF +P  +P PVN  DA T  A      
Sbjct: 384  PDHTKLIKALQWQPVLLEFKVSTVLVHKRTPPGFRHPLCRPLPVNEVDALTTAA------ 437

Query: 1408 XXXXXXXXTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNTRLGG---PLLPK 1238
                                  ++ SL +   +LS +QL ALH LG+ R  G   P  PK
Sbjct: 438  ---------------------CANQSLPLD--NLSEDQLEALHVLGSLRTDGESLPSPPK 474

Query: 1237 ITXXXXXXXXXXXXXXXXXPTQASASLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFE 1058
                                T  + ++    +        DP TLPW AWLP L ALGFE
Sbjct: 475  APLETGPHPTPTISAAGPTKTVPTPNVEVSANPLTGTPLPDPDTLPWKAWLPHLRALGFE 534

Query: 1057 ALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPG-LSKVLTTLRGLNRFPTPWCPDRA 881
            A EIQTDP     IMPI D++ LP  T  E+ +      KV+ TL+ LNR PTPW PDR 
Sbjct: 535  ASEIQTDPRDHSTIMPITDIQTLPHETFDEYDSTSSPFDKVVITLKQLNRSPTPWTPDRL 594

Query: 880  RARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTL 701
            RARA+ SD+KNSRTGKALH+E+Q WKETQT LTE     L +SVIHGAGGSGKSQALQT+
Sbjct: 595  RARAYASDIKNSRTGKALHKESQNWKETQTRLTETSETRLGLSVIHGAGGSGKSQALQTM 654

Query: 700  LRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQG 521
            LR +P+LP+EVVLPTNELR DWL+KLPHNPPEQFRTFERAFV S +PVVIFDDYGKLPQG
Sbjct: 655  LRNHPDLPVEVVLPTNELRXDWLRKLPHNPPEQFRTFERAFVSSTAPVVIFDDYGKLPQG 714

Query: 520  YIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNS 341
            ++EAFA+    L+L ILTGDPRQSTHHE+NE+A+I++L PAT IFS L RYYINATHRN 
Sbjct: 715  FLEAFALCRPGLKLAILTGDPRQSTHHESNEQAMIAQLEPATKIFSALCRYYINATHRNV 774

Query: 340  KFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITA 161
            K LANKLGVYSSN  PL V+YGF+P+PG+HLLVPSL+KKAAF DAGHKVSTYAGCQGITA
Sbjct: 775  KELANKLGVYSSNPSPLHVSYGFRPEPGLHLLVPSLVKKAAFADAGHKVSTYAGCQGITA 834

Query: 160  PRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLK 2
            P+VQILLD+DTTMC+ EVLYTALSRAVDSIHF+NSNAQSSAFWEKLEATPYLK
Sbjct: 835  PKVQILLDSDTTMCSSEVLYTALSRAVDSIHFINSNAQSSAFWEKLEATPYLK 887


>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
            virus]
          Length = 669

 Score = 1029 bits (2661), Expect = 0.0
 Identities = 510/653 (78%), Positives = 549/653 (84%), Gaps = 1/653 (0%)
 Frame = -3

Query: 2668 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 2489
            YR LKRELAQTRH+NPFAQ+PEAADALE LGINSHPYAITPHTHAAAKAIESDLYEVVSH
Sbjct: 25   YRHLKRELAQTRHNNPFAQSPEAADALEVLGINSHPYAITPHTHAAAKAIESDLYEVVSH 84

Query: 2488 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNI 2309
            YLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQ+T+I RLENIPTNI
Sbjct: 85   YLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQETIIKRLENIPTNI 144

Query: 2308 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 2129
            AF+GDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL+PQIYTLTYSEDGFM
Sbjct: 145  AFIGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLHPQIYTLTYSEDGFM 204

Query: 2128 YIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPER 1949
            YIPGGHAGASYFHKY QLEWLTVGHLTAP   T+TAQRLETKGANHLFIFQRGNYLTPER
Sbjct: 205  YIPGGHAGASYFHKYSQLEWLTVGHLTAPGLLTVTAQRLETKGANHLFIFQRGNYLTPER 264

Query: 1948 RTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 1769
            RTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST
Sbjct: 265  RTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 324

Query: 1768 KELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGR 1589
            KELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPL S   ++L FFRGR
Sbjct: 325  KELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRILRPLTSGATQILNFFRGR 384

Query: 1588 PSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXX 1409
            PSFVKLI+ALDWQPITLEFPVR VNT LRGPPGF +PFT+P PVNPDDA+T  +F+ F  
Sbjct: 385  PSFVKLIQALDWQPITLEFPVRKVNTLLRGPPGFDSPFTRPQPVNPDDAETTHSFQAF-- 442

Query: 1408 XXXXXXXXTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITX 1229
                     +  +LE  AE    H SL++    LS  QL ALH+LGN R GGPLLP+   
Sbjct: 443  ---CQAAAAVETTLEQQAETPDEHQSLRLDCPTLSEHQLWALHKLGNARCGGPLLPQ--- 496

Query: 1228 XXXXXXXXXXXXXXXXPTQASASLNQ-GDHTDEAPVNSDPATLPWVAWLPKLNALGFEAL 1052
                             T A+   +Q        P   DP TLPWVAWLPKLNALGFEAL
Sbjct: 497  RPDTSTVVEPCPDLPPETHAAPEPSQRNTQAPNLPSPQDPTTLPWVAWLPKLNALGFEAL 556

Query: 1051 EIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARAR 872
            EIQ DPSTG +IMPI D ++LP+A  P HW  P + ++++TLR LNR+PTPW PDR+RAR
Sbjct: 557  EIQNDPSTGNMIMPITDTKELPRAIGPAHWQGPDMEQIISTLRSLNRYPTPWNPDRSRAR 616

Query: 871  AFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQA 713
            AFTSDVKNSRTGKALHRE+Q WKETQTMLTE+   NLAISVIHGAGGSGKSQA
Sbjct: 617  AFTSDVKNSRTGKALHRESQVWKETQTMLTESTQTNLAISVIHGAGGSGKSQA 669


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
            gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
            RNA polymerase [Cassava common mosaic virus]
            gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score =  492 bits (1266), Expect = e-136
 Identities = 236/374 (63%), Positives = 295/374 (78%)
 Frame = -3

Query: 1123 NSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLS 944
            N+  A LPW  W+PKLNALGFEA E Q  P T  +IMPI D+    K  +P H       
Sbjct: 612  NAKEAGLPWAVWMPKLNALGFEAKEKQISPITKSMIMPITDI----KTGIPVHRETKAPQ 667

Query: 943  KVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTAN 764
            ++L  L+ L+R PT W PD  RA++FTSD+KN RTGK L +E+Q+WKE QT+  ++    
Sbjct: 668  ELLDLLKALSRMPTLWTPDTLRAKSFTSDIKNGRTGKCLQQESQSWKEAQTLKVDHNIRP 727

Query: 763  LAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER 584
            + +SVIHGAGGSGKS ALQ LLR +PELPI+V+LPTNELR+DWL KLP N PE FRTFE+
Sbjct: 728  VPLSVIHGAGGSGKSAALQDLLRDHPELPIQVILPTNELRMDWLSKLPRNRPENFRTFEK 787

Query: 583  AFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLA 404
            A++ + +P +I DDYGKLPQGY+EAFA+TH ++EL++LTGD +QS HHE NE+A+I++L 
Sbjct: 788  AYLQTNAPSIIMDDYGKLPQGYVEAFAVTHPNVELIVLTGDNKQSVHHETNEQAMIAQLE 847

Query: 403  PATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKK 224
            P+T IFS+ SRYYINATHRN+K LAN LGVYS N+  LK+T+GFQP   +HLLVPSL+KK
Sbjct: 848  PSTQIFSQFSRYYINATHRNAKKLANMLGVYSDNNKELKITHGFQPIKDIHLLVPSLIKK 907

Query: 223  AAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQS 44
            AAF++AGHK STYAGCQGITA ++QILLD++T MC++EVLYTALSRAVDSIHF+N+   S
Sbjct: 908  AAFSEAGHKTSTYAGCQGITARKLQILLDSNTPMCSQEVLYTALSRAVDSIHFINTAPTS 967

Query: 43   SAFWEKLEATPYLK 2
            S FWEKLEATPYLK
Sbjct: 968  SNFWEKLEATPYLK 981



 Score =  461 bits (1187), Expect = e-127
 Identities = 224/396 (56%), Positives = 285/396 (71%), Gaps = 12/396 (3%)
 Frame = -3

Query: 2668 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 2489
            YRT+K EL Q +  NP+AQT EAAD LE LG+ +HPYAI  HTHAA KA+E DLY  VSH
Sbjct: 25   YRTIKAELNQAKIINPYAQTGEAADLLETLGVITHPYAIATHTHAAGKALELDLYHSVSH 84

Query: 2488 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNI 2309
            YLP+++PV+F+FMKPAKL++  RGP H D F+N+ VEPKD+ RYP+ TV+  +  I T+I
Sbjct: 85   YLPRKSPVTFMFMKPAKLQYLRRGPQHRDHFVNSWVEPKDLARYPEQTVVDGIPPIQTSI 144

Query: 2308 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 2129
            AFMGDTLHFL+P FV  LFA SPKL+T YAT+VLPPEAL+++ SLYPQIYTL Y E GF+
Sbjct: 145  AFMGDTLHFLTPKFVGTLFARSPKLKTFYATMVLPPEALHKMNSLYPQIYTLQYKEKGFI 204

Query: 2128 YIPGGHAGASYFHKYDQLEWLTVGHL-----TAPN-------QPTITAQRLETKGANHLF 1985
            Y PGGHAGASY+H+Y QL WL VG +      AP+       +  +TAQR+ETKGANHLF
Sbjct: 205  YTPGGHAGASYYHEYSQLGWLDVGLIEYFEENAPDGSEYLGTKWAVTAQRIETKGANHLF 264

Query: 1984 IFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKER 1805
            +FQRG   TP+ R+  T   Y+TVP +FLP+K+N R P+ KTI  QMF YIKSVK+  ER
Sbjct: 265  VFQRGRLQTPQMRSIATNTQYITVPAVFLPKKFNSRQPLKKTIAQQMFLYIKSVKQVTER 324

Query: 1804 DIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRS 1625
            DI++K RQLI T ELQ Y P E+ LL NYF   + L S    E+VL+G+L ++L RP++S
Sbjct: 325  DIYSKLRQLIKTSELQEYSPDELVLLANYFMLISELSSKASAEEVLAGSLFKKLFRPIKS 384

Query: 1624 DIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTV 1517
             +   +    G+P F +L++AL W  + L  PVR V
Sbjct: 385  KVTAFIHKLFGQPEFAQLLEALLWTNVDLILPVRYV 420


>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
           virus]
          Length = 711

 Score =  466 bits (1198), Expect = e-128
 Identities = 227/237 (95%), Positives = 233/237 (98%)
 Frame = -3

Query: 712 LQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGK 533
           LQTLLRQ+P LP+EVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGK
Sbjct: 1   LQTLLRQHPSLPVEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGK 60

Query: 532 LPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINAT 353
           LPQGY+EAFAMTHASLELVILTGDPRQSTHHEANEEALISKL PATTIFSELSRYYINAT
Sbjct: 61  LPQGYLEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLPPATTIFSELSRYYINAT 120

Query: 352 HRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQ 173
           HRNSKFLANKLGVYSSNSCPLKVTYG QPQPG+HLLVPSLMKKAAFTDAGHKVSTYAGCQ
Sbjct: 121 HRNSKFLANKLGVYSSNSCPLKVTYGSQPQPGLHLLVPSLMKKAAFTDAGHKVSTYAGCQ 180

Query: 172 GITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLK 2
           GITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHF+NSNAQSSAFWEKLEATPYLK
Sbjct: 181 GITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFINSNAQSSAFWEKLEATPYLK 237


>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  453 bits (1165), Expect = e-124
 Identities = 229/385 (59%), Positives = 276/385 (71%), Gaps = 1/385 (0%)
 Frame = -3

Query: 1153 QGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIAD-VRDLPKAT 977
            +G      PV++    LPW  W P L  LGF+A EIQ  P    VIMPI + V  LP + 
Sbjct: 535  EGQKMITRPVSTLEDALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQ 594

Query: 976  LPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKET 797
            +  H        V+  L  L+R PTPW P   RAR++TSD+KN RTG  L +E+ TWKET
Sbjct: 595  IQGH------ELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKET 648

Query: 796  QTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPH 617
            QT+  E +   + +SVIHG GGSGKS A Q LLRQ+P++ ++VVLPTNELRLDW+ K P 
Sbjct: 649  QTLKAERLEKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPK 708

Query: 616  NPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHE 437
              PE+ +T+ERAF    SPVV+FDDYGKLP GYIEA+      +ELVILTGD RQSTHHE
Sbjct: 709  VRPEKIKTYERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHE 768

Query: 436  ANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPG 257
             NE+A+IS+LAPAT +F  L RYYINATHRN + LANKL VYS      K+T GFQP   
Sbjct: 769  NNEQAMISQLAPATEVFQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKD 828

Query: 256  MHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVD 77
            +HLLVPSL+KK+A+ + GHKVSTYAGCQGITAP++QILLDNDT MC+KEVLYTALSRAV 
Sbjct: 829  LHLLVPSLLKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVH 888

Query: 76   SIHFVNSNAQSSAFWEKLEATPYLK 2
            SIHF+N+    S+FWEKLEATPYLK
Sbjct: 889  SIHFINTGPTHSSFWEKLEATPYLK 913



 Score =  401 bits (1031), Expect = e-109
 Identities = 202/389 (51%), Positives = 261/389 (67%), Gaps = 3/389 (0%)
 Frame = -3

Query: 2668 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 2489
            Y++++  L   +H NP+A   E A+ LE  GI S PYA+  HTHAAAK +E DLY  VSH
Sbjct: 25   YKSIRTTLQAAKHLNPYAHPSETAEFLERQGIISDPYAVAAHTHAAAKCLELDLYASVSH 84

Query: 2488 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNI 2309
            Y+PKENPV+FLFMK AKL++F RG   GD F+N   EPKD  RYP DT+ S +  I T +
Sbjct: 85   YMPKENPVTFLFMKRAKLQYFRRGTQQGDVFVNTLFEPKDAARYPLDTICSAIPPIQTQM 144

Query: 2308 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 2129
            AFMGDTLHFL P+F+T LF  SP L TLYAT+VLPPEA ++LRSL+P +YTL Y +D F+
Sbjct: 145  AFMGDTLHFLEPAFLTDLFDRSPHLNTLYATMVLPPEAKHKLRSLHPLVYTLQYLKDHFI 204

Query: 2128 YIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPER 1949
            Y+PGGHAGASY H Y QL+WL VGH+ +P+   ITAQR+ETK ANHLF+F RG   TP  
Sbjct: 205  YLPGGHAGASYCHTYSQLQWLDVGHIVSPSGNCITAQRIETKAANHLFVFIRGRLNTPPM 264

Query: 1948 RTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 1769
            R+F     Y T+P IFLP ++N RTP +KT + QMF Y+KS+K+  E D++AKFRQL  T
Sbjct: 265  RSFAPMRAYCTLPAIFLPTEFNSRTPYTKTFLQQMFLYLKSIKKPTETDLYAKFRQLTKT 324

Query: 1768 KELQHYQPSEI---TLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFF 1598
             +LQ   P       LL  + E   S         +LSG+ ++RLL+PL   ++++ Q  
Sbjct: 325  DDLQELDPKRSHYGELLPPHLEARFS----HLLRCILSGSALRRLLKPLICWMEKMRQTI 380

Query: 1597 RGRPSFVKLIKALDWQPITLEFPVRTVNT 1511
             GR  FV+L+KAL+W  IT    V   +T
Sbjct: 381  FGREEFVRLMKALEWTDITFTEQVMAYHT 409


>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
            viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  453 bits (1165), Expect = e-124
 Identities = 229/385 (59%), Positives = 276/385 (71%), Gaps = 1/385 (0%)
 Frame = -3

Query: 1153 QGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIAD-VRDLPKAT 977
            +G      PV++    LPW  W P L  LGF+A EIQ  P    VIMPI + V  LP + 
Sbjct: 535  EGQKMITRPVSALENALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQ 594

Query: 976  LPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKET 797
            +  H        V+  L  L+R PTPW P   RAR++TSD+KN RTG  L +E+ TWKET
Sbjct: 595  IQGH------ELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKET 648

Query: 796  QTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPH 617
            QT+  E +   + +SVIHG GGSGKS A Q LLRQ+P++ ++VVLPTNELRLDW+ K P 
Sbjct: 649  QTLKAERLEKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPK 708

Query: 616  NPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHE 437
              PE+ +T+ERAF    SPVV+FDDYGKLP GYIEA+      +ELVILTGD RQSTHHE
Sbjct: 709  VRPEKIKTYERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHE 768

Query: 436  ANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPG 257
             NE+A+IS+LAPAT +F  L RYYINATHRN + LANKL VYS      K+T GFQP   
Sbjct: 769  NNEQAMISQLAPATEVFQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKD 828

Query: 256  MHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVD 77
            +HLLVPSL+KK+A+ + GHKVSTYAGCQGITAP++QILLDNDT MC+KEVLYTALSRAV 
Sbjct: 829  LHLLVPSLLKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVH 888

Query: 76   SIHFVNSNAQSSAFWEKLEATPYLK 2
            SIHF+N+    S+FWEKLEATPYLK
Sbjct: 889  SIHFINTGPTHSSFWEKLEATPYLK 913



 Score =  401 bits (1031), Expect = e-109
 Identities = 202/389 (51%), Positives = 261/389 (67%), Gaps = 3/389 (0%)
 Frame = -3

Query: 2668 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 2489
            Y++++  L   +H NP+A   E A+ LE  GI S PYA+  HTHAAAK +E DLY  VSH
Sbjct: 25   YKSIRTTLQAAKHLNPYAHPSETAEFLERQGIISDPYAVAAHTHAAAKCLELDLYASVSH 84

Query: 2488 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNI 2309
            Y+PKENPV+FLFMK AKL++F RG   GD F+N   EPKD  RYP DT+ S +  I T +
Sbjct: 85   YMPKENPVTFLFMKRAKLQYFRRGTQQGDVFVNTLFEPKDAARYPLDTICSAIPPIQTQM 144

Query: 2308 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFM 2129
            AFMGDTLHFL P+F+T LF  SP L TLYAT+VLPPEA ++LRSL+P +YTL Y +D F+
Sbjct: 145  AFMGDTLHFLEPAFLTDLFDRSPHLNTLYATMVLPPEAKHKLRSLHPLVYTLQYLKDHFI 204

Query: 2128 YIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPER 1949
            Y+PGGHAGASY H Y QL+WL VGH+ +P+   ITAQR+ETK ANHLF+F RG   TP  
Sbjct: 205  YLPGGHAGASYCHTYSQLQWLDVGHIVSPSGNCITAQRIETKAANHLFVFIRGRLNTPPM 264

Query: 1948 RTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLIST 1769
            R+F     Y T+P IFLP ++N RTP +KT + QMF Y+KS+K+  E D++AKFRQL  T
Sbjct: 265  RSFAPMRAYCTLPAIFLPTEFNSRTPYTKTFLQQMFLYLKSIKKPTETDLYAKFRQLTKT 324

Query: 1768 KELQHYQPSEI---TLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFF 1598
             +LQ   P       LL  + E   S         +LSG+ ++RLL+PL   ++++ Q  
Sbjct: 325  DDLQELDPKRSHYGELLPPHLEARFS----HLLRCILSGSALRRLLKPLICWMEKMRQTI 380

Query: 1597 RGRPSFVKLIKALDWQPITLEFPVRTVNT 1511
             GR  FV+L+KAL+W  IT    V   +T
Sbjct: 381  FGREEFVRLMKALEWTDITFTEQVMAYHT 409


>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
            RecName: Full=RNA replication protein; AltName: Full=176
            kDa protein; AltName: Full=ORF1 protein; Includes:
            RecName: Full=RNA-directed RNA polymerase; Includes:
            RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
            protein product [Papaya mosaic virus]
            gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
            virus]
          Length = 1547

 Score =  434 bits (1116), Expect = e-118
 Identities = 220/368 (59%), Positives = 272/368 (73%)
 Frame = -3

Query: 1105 LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTL 926
            LPW AW+PKL  LGF+  ++Q DP+ G +I PI ++R +PK   PE   E     V  TL
Sbjct: 707  LPWKAWIPKLQNLGFQGRQLQYDPN-GALISPIEEIRSMPKCK-PEGVPEV----VYKTL 760

Query: 925  RGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVI 746
             GL R PTP+ P+  RARA+TSDVKN R G  L ++ + W      L E     LAISVI
Sbjct: 761  DGLARAPTPYSPNPIRARAYTSDVKNCRIGALLRQQGKEWGCRFDALVEAGKRELAISVI 820

Query: 745  HGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSK 566
            HGAGGSGKSQALQTL++ NPEL I VVLPTNELRLDWL+KLP  P E+F+TFE+A +   
Sbjct: 821  HGAGGSGKSQALQTLIKDNPELDITVVLPTNELRLDWLRKLPKAPQEKFKTFEKALLAPP 880

Query: 565  SPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIF 386
            +P+VIFDDYGKLP GY+EAF +  ++++L+ILTGD +QS HHE+NE A  S + P     
Sbjct: 881  TPIVIFDDYGKLPAGYVEAFCLYFSTVQLIILTGDCKQSVHHESNENATTSSIEPLVKEA 940

Query: 385  SELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDA 206
            SEL RYYINATHRN K LANKLGVYS  +   +VT+G  P PG+H+LVPSL KK AF++ 
Sbjct: 941  SELCRYYINATHRNKKDLANKLGVYSEKTGLTEVTHGTTPIPGLHMLVPSLYKKQAFSEM 1000

Query: 205  GHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEK 26
            GHKVSTYAGCQGITAP++QILL  +T++C++EVLYTALSRAV SIHFVN++  + AFW+K
Sbjct: 1001 GHKVSTYAGCQGITAPKIQILLTEETSLCSREVLYTALSRAVHSIHFVNASPNNQAFWKK 1060

Query: 25   LEATPYLK 2
            LE TPYLK
Sbjct: 1061 LECTPYLK 1068



 Score =  433 bits (1113), Expect = e-118
 Identities = 214/395 (54%), Positives = 279/395 (70%), Gaps = 8/395 (2%)
 Frame = -3

Query: 2668 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 2489
            YR +K  + +T+  NP+A     AD+LE LGI ++P+A+  HTHAAAK IE D+Y++VS 
Sbjct: 25   YRDIKLTIKETKTYNPYAHPVAVADSLEKLGIETNPFAVKAHTHAAAKTIELDMYKIVSF 84

Query: 2488 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISR--LENIPT 2315
            YLPKENP +F+FMK +KL++F RGP   D FLNAH+EPKDV RY  DT+  +     I T
Sbjct: 85   YLPKENPTTFMFMKRSKLQYFRRGPQQKDVFLNAHIEPKDVARYDVDTLFDKNVTPQITT 144

Query: 2314 NIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDG 2135
            N AFMGDTLHFL  + +  +F  SPKLQTLYAT+VLPPEAL+RL SL+P IY L + ++ 
Sbjct: 145  NTAFMGDTLHFLPLTAIERIFKSSPKLQTLYATMVLPPEALHRLHSLHPGIYELEFHQEH 204

Query: 2134 FMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQP----TITAQRLETKGANHLFIFQRGN 1967
            F+Y PGGHAGA+Y HKY+QLEW+ VG     ++      +T+Q LETKGANHLFIFQRG 
Sbjct: 205  FIYKPGGHAGAAYIHKYEQLEWIKVGRFKWADEKGLTHMVTSQILETKGANHLFIFQRGR 264

Query: 1966 YLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKF 1787
            +LTPE R F+T   YVT+P IFLP+++N R PI KT   Q+F Y+KSVK   ERDIWAK 
Sbjct: 265  FLTPELRCFSTETKYVTMPPIFLPKQFNARLPIKKTTAQQLFLYVKSVKNVTERDIWAKM 324

Query: 1786 RQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRS--DIQR 1613
            RQL+ T ELQ Y P E+TLLVNYF   A L S TCF++VLSG + ++L +P  +  +IQ+
Sbjct: 325  RQLLKTSELQDYNPREVTLLVNYFLLIARLRSETCFDNVLSGGMFKKLFKPFIAWWEIQK 384

Query: 1612 VLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR 1508
               F  G   F +L++AL+W  +TL +P +T + R
Sbjct: 385  HKIF--GNEEFEQLMEALEWVDVTLTYPTKTFDNR 417


>gb|ACS28228.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  419 bits (1078), Expect = e-114
 Identities = 202/389 (51%), Positives = 274/389 (70%), Gaps = 6/389 (1%)
 Frame = -3

Query: 2668 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 2489
            YR +K+ +A+T+  NP+AQ P AAD+LE LGI S+P+++  HTHAAAK+IE D+Y++  +
Sbjct: 25   YREIKKTIAETKQYNPYAQDPAAADSLEKLGIESNPFSVRAHTHAAAKSIELDMYKITGY 84

Query: 2488 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVI--SRLENIPT 2315
             LPKENP++FLFMK +KL++FHRGP HGD FLNA +EPKDV RY  + +   S    I T
Sbjct: 85   SLPKENPITFLFMKRSKLQYFHRGPQHGDLFLNACIEPKDVTRYALEDLFKPSTTPEIQT 144

Query: 2314 NIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDG 2135
             +AF+GDTLHFL    +  +F  S KLQTLYAT+VLPPEA++R+ S++P IY L + E  
Sbjct: 145  RVAFIGDTLHFLPLGAIREIFTSSQKLQTLYATMVLPPEAMHRMHSIHPSIYELEFHEKN 204

Query: 2134 FMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPT----ITAQRLETKGANHLFIFQRGN 1967
            F+Y PGGHAGASY H+Y QL+WL VG     ++      +T+Q LETKGANHLF+FQRGN
Sbjct: 205  FIYKPGGHAGASYCHEYSQLQWLKVGKFEWCDKKYQKHYVTSQILETKGANHLFVFQRGN 264

Query: 1966 YLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKF 1787
            + TP  RTF     +VT+P IFLP+KYN R PI KT+  Q+F YIKSVK   ERDIWAK 
Sbjct: 265  FATPTYRTFGVETKFVTLPPIFLPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDIWAKV 324

Query: 1786 RQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVL 1607
            RQ+I T ELQ Y   E+ L+VNY+   + LDS TCF++VL+G ++++L +P+ +      
Sbjct: 325  RQIIKTAELQSYSAKELALIVNYYLLISKLDSVTCFDNVLTGGVLKKLFKPIVAWWSTFK 384

Query: 1606 QFFRGRPSFVKLIKALDWQPITLEFPVRT 1520
                G+  F +L++AL+W  ++L + V T
Sbjct: 385  GKIFGKEEFEQLMEALEWVDVSLSYKVET 413



 Score =  417 bits (1071), Expect = e-113
 Identities = 214/372 (57%), Positives = 264/372 (70%)
 Frame = -3

Query: 1117 DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKV 938
            +P  LPW AWL KL  LGF  +++Q DP+ G +I PI  V+ LPK + PE   +P L K+
Sbjct: 697  EPDNLPWKAWLGKLRNLGFRGMQLQYDPN-GALISPIESVKSLPKCS-PEKV-DPSLLKM 753

Query: 937  LTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLA 758
            L       R PTP+ P   RA+A++SDVKNSR G  L ++ + W      L EN    LA
Sbjct: 754  LDNQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLA 810

Query: 757  ISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAF 578
            ISVIHGAGGSGKS+ALQ  L+ NP+  + +VLPTNELRLDWLKKLP  P +Q +TFE+A 
Sbjct: 811  ISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKAL 870

Query: 577  VCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPA 398
            +    P VIFDDYGKLP GYIE+F+   +S EL++LTGD +QS HHE+NE A+ S + P 
Sbjct: 871  LAPTKPTVIFDDYGKLPAGYIESFSFYMSSAELLVLTGDSKQSVHHESNENAMSSLIEPF 930

Query: 397  TTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAA 218
            T    + SRYYINATHRN + LANKLGVYS  +    +T G  P PG+HLLVPSL KK A
Sbjct: 931  TLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKEA 990

Query: 217  FTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSA 38
            F++ GHKVSTYAGCQG+TAPRVQILL  +T+MC++EV+YTALSRAV SIHFVN    + A
Sbjct: 991  FSEMGHKVSTYAGCQGLTAPRVQILLSEETSMCSREVIYTALSRAVHSIHFVNCGPNNQA 1050

Query: 37   FWEKLEATPYLK 2
            FW KLE+TPYLK
Sbjct: 1051 FWAKLESTPYLK 1062


>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
          Length = 1541

 Score =  419 bits (1076), Expect = e-114
 Identities = 202/389 (51%), Positives = 274/389 (70%), Gaps = 6/389 (1%)
 Frame = -3

Query: 2668 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 2489
            YR +K+ +A+T+  NP+AQ P AAD+LE LGI S+P+++  HTHAAAK+IE D+Y++  +
Sbjct: 25   YREIKKTIAETKQYNPYAQDPAAADSLEKLGIESNPFSVRAHTHAAAKSIELDMYKITGY 84

Query: 2488 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVI--SRLENIPT 2315
             LPKENP++FLFMK +KL++FHRGP HGD FLNA +EPKDV RY  + +   S    I T
Sbjct: 85   SLPKENPITFLFMKRSKLQYFHRGPQHGDLFLNACIEPKDVTRYALEDLFKPSITPEIQT 144

Query: 2314 NIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDG 2135
             +AF+GDTLHFL    +  +F  S KLQTLYAT+VLPPEA++R+ S++P IY L + E  
Sbjct: 145  RVAFIGDTLHFLPLGAIREIFTSSQKLQTLYATMVLPPEAMHRMHSIHPSIYELEFHEKN 204

Query: 2134 FMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPT----ITAQRLETKGANHLFIFQRGN 1967
            F+Y PGGHAGASY H+Y QL+WL VG     ++      +T+Q LETKGANHLF+FQRGN
Sbjct: 205  FIYKPGGHAGASYCHEYSQLQWLKVGKFEWCDKKYQKHHVTSQILETKGANHLFVFQRGN 264

Query: 1966 YLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKF 1787
            + TP  RTF     +VT+P IFLP+KYN R PI KT+  Q+F YIKSVK   ERDIWAK 
Sbjct: 265  FATPTYRTFGVETKFVTLPPIFLPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDIWAKV 324

Query: 1786 RQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVL 1607
            RQ+I T ELQ Y   E+ L+VNY+   + LDS TCF++VL+G ++++L +P+ +      
Sbjct: 325  RQIIKTAELQSYSAKELALIVNYYLLISKLDSVTCFDNVLTGGVLKKLFKPIVAWWSTFK 384

Query: 1606 QFFRGRPSFVKLIKALDWQPITLEFPVRT 1520
                G+  F +L++AL+W  ++L + V T
Sbjct: 385  GKIFGKEEFEQLMEALEWVDVSLSYKVET 413



 Score =  418 bits (1075), Expect = e-114
 Identities = 215/372 (57%), Positives = 265/372 (71%)
 Frame = -3

Query: 1117 DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKV 938
            +P  LPW AWL KL  LGF  +++Q DP+ G +I PI  V+ LPK + PE  N P L K+
Sbjct: 697  EPDNLPWKAWLGKLRNLGFRGMQLQYDPN-GALISPIESVKSLPKCS-PEKVN-PSLLKM 753

Query: 937  LTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLA 758
            L       R PTP+ P   RA+A++SDVKNSR G  L ++ + W      L EN    LA
Sbjct: 754  LDDQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLA 810

Query: 757  ISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAF 578
            ISVIHGAGGSGKS+ALQ  L+ NP+  + +VLPTNELRLDWLKKLP  P +Q +TFE+A 
Sbjct: 811  ISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKAL 870

Query: 577  VCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPA 398
            +    P VIFDDYGKLP GYIE+F+   +S EL++LTGD +QS HHE+NE A+ S + P 
Sbjct: 871  LAPTKPTVIFDDYGKLPAGYIESFSFYMSSAELLVLTGDSKQSVHHESNENAMSSLIEPF 930

Query: 397  TTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAA 218
            T    + SRYYINATHRN + LANKLGVYS  +    +T G  P PG+HLLVPSL KK A
Sbjct: 931  TLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKQA 990

Query: 217  FTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSA 38
            F++ GHKVSTYAGCQG+TAPRVQILL  +T+MC++EV+YTALSRAV SIHFVN +  + A
Sbjct: 991  FSEMGHKVSTYAGCQGLTAPRVQILLSEETSMCSREVIYTALSRAVHSIHFVNCSPNNQA 1050

Query: 37   FWEKLEATPYLK 2
            FW KLE+TPYLK
Sbjct: 1051 FWAKLESTPYLK 1062


>ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548097|gb|AEO12140.1|
            replicase [Tamus red mosaic virus]
          Length = 1501

 Score =  418 bits (1075), Expect = e-114
 Identities = 214/416 (51%), Positives = 278/416 (66%), Gaps = 6/416 (1%)
 Frame = -3

Query: 2668 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 2489
            Y+ L++ L+ T  +NP+A    AA+ LE LGINS+P+A T HTH+AAKAIE+DLY   S 
Sbjct: 25   YQHLRKTLSHTATTNPYAIAESAANVLEDLGINSNPFATTAHTHSAAKAIENDLYFSASS 84

Query: 2488 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNI 2309
             LPKENPVSFLFMKPAKLRFFHRGP H D F+N  VEPKDV RY  DT++S L  + T+ 
Sbjct: 85   LLPKENPVSFLFMKPAKLRFFHRGPQHNDHFINKVVEPKDVARYDPDTLVSSLPTLSTSH 144

Query: 2308 AFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSE---- 2141
            AFMGD+LHFL  SF+  LF+ + +L+TL AT+VLP EA + L S+YP IYTL Y      
Sbjct: 145  AFMGDSLHFLPFSFLVRLFSDNVQLKTLVATMVLPAEAKFNLASIYPNIYTLQYHRCKKG 204

Query: 2140 --DGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGN 1967
                F Y PGGH GA Y H+  QL+WL+VG LT     TITAQ++ETK ANHLFIFQRG+
Sbjct: 205  KVTHFSYAPGGHKGAEYVHELKQLDWLSVGRLT-DGVTTITAQKIETKAANHLFIFQRGS 263

Query: 1966 YLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKF 1787
             +TP  R F+T   +VT+P IFLPEK+N R PI KT++MQMF Y+K VK+  ERDIWAK+
Sbjct: 264  LMTPCLRNFSTETKFVTLPLIFLPEKFNARQPIRKTLVMQMFLYVKGVKQVSERDIWAKW 323

Query: 1786 RQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVL 1607
            RQLI T++LQ +   E+  L NYF F     S  CF+DVL G  + R  +P+++  + V 
Sbjct: 324  RQLIKTEDLQDFSAIELLHLTNYFVFVGKQSSINCFDDVLKGGFLTRWFKPIKNWFEMVR 383

Query: 1606 QFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDAD 1439
            Q   G   FV+L++AL+W  + L+   +  + + R   GF +         PDD++
Sbjct: 384  QKIFGEAEFVRLVRALEWTEVDLKLDTKNYDFKRREGNGFLS--LSKVAAGPDDSE 437



 Score =  344 bits (882), Expect = 1e-91
 Identities = 180/368 (48%), Positives = 236/368 (64%), Gaps = 1/368 (0%)
 Frame = -3

Query: 1102 PWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLR 923
            PW  W+  L   GF+      D +   +I PI  V  L     P          +   L+
Sbjct: 669  PWAKWMSILENAGFKGTTCLLD-ANNYLIQPILGVSKLTARAWPRELTPE--VDLFDRLK 725

Query: 922  GLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTAN-LAISVI 746
             ++R P  +     RARA+ SDVKN RTG     +   WKE  TM+ E+     +A++VI
Sbjct: 726  AIHRHPCAYTISNLRARAYASDVKNDRTGSFTRSQDLAWKEAFTMICESPRQREVALTVI 785

Query: 745  HGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSK 566
            HGAGGSGKS ALQ  L   P+  +++VLPTN LR+DWL KLP  P    +TFE+A     
Sbjct: 786  HGAGGSGKSFALQKYLEDCPDAEVKIVLPTNGLRMDWLAKLPKFPLTSVQTFEKALXSQT 845

Query: 565  SPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIF 386
            + VVIFDDY KLP GYI+A+     ++   ILTGD RQS+ HE NE+ALI+ L PA   F
Sbjct: 846  AKVVIFDDYTKLPNGYIDAYLSLRTTVVWAILTGDSRQSSFHEMNEQALINGLTPAADHF 905

Query: 385  SELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDA 206
            S+ +RYY+NATHRN + LA  LGVYS  +    V+   +P   +H+LVPSL++K  +T+ 
Sbjct: 906  SDYARYYLNATHRNKQDLARMLGVYSERTGLTTVSMSSRPLKEVHMLVPSLIQKKTYTEL 965

Query: 205  GHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEK 26
            G+K STYAGCQGITAP+VQ+LL++DTT+CT +VLYTALSRAV SIHF+N++A S+AFW+K
Sbjct: 966  GYKTSTYAGCQGITAPKVQVLLNSDTTLCTDKVLYTALSRAVHSIHFINTSASSAAFWDK 1025

Query: 25   LEATPYLK 2
            L ATPYLK
Sbjct: 1026 LNATPYLK 1033


>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  418 bits (1075), Expect = e-114
 Identities = 218/388 (56%), Positives = 272/388 (70%)
 Frame = -3

Query: 1165 ASLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLP 986
            +++ QG  ++E     +P  LPW AWL KL  LGF   ++Q DP+ G +I PI  ++ LP
Sbjct: 682  STVKQGVTSEEGDY-VEPDNLPWKAWLEKLRNLGFRGTQLQYDPN-GALISPIESIKSLP 739

Query: 985  KATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTW 806
            K + PE  N P L K+L       R PTP+ P   RA+A++SDVKNSR G  L ++ + W
Sbjct: 740  KCS-PEKVN-PSLLKMLNDQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDW 794

Query: 805  KETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKK 626
                  L EN    LAISVIHGAGGSGKS+ALQ  L+ NP+  + +VLPTNELRLDWLKK
Sbjct: 795  GHRFDSLVENGQRQLAISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKK 854

Query: 625  LPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQST 446
            LP  P +Q +TFE+A +    P VIFDDYGKLP GYIEAF+   +S+EL++LTGD +QS 
Sbjct: 855  LPTFPADQIKTFEKALLAPIKPTVIFDDYGKLPAGYIEAFSCYMSSVELLVLTGDSKQSV 914

Query: 445  HHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQP 266
            HHE+NE A+ S + P T    + SRYYINATHRN + LANKLGVYS  +    +T G  P
Sbjct: 915  HHESNENAMSSLIEPFTLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHP 974

Query: 265  QPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSR 86
             PG+HLLVPSL KK AF++ GHKVSTYAGCQG+TAPRVQILL  +T+MC++EV+YTALSR
Sbjct: 975  VPGLHLLVPSLYKKEAFSEMGHKVSTYAGCQGLTAPRVQILLSEETSMCSREVIYTALSR 1034

Query: 85   AVDSIHFVNSNAQSSAFWEKLEATPYLK 2
            AV SIHFVN    + AFW KLE+TPYLK
Sbjct: 1035 AVHSIHFVNCGPNNQAFWAKLESTPYLK 1062



 Score =  418 bits (1074), Expect = e-114
 Identities = 202/389 (51%), Positives = 272/389 (69%), Gaps = 6/389 (1%)
 Frame = -3

Query: 2668 YRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSH 2489
            YR +K+ +A+T+  NP+AQ P AAD+LE LGI S+P+++  HTHAAAK+IE D+Y++  +
Sbjct: 25   YREIKKTIAETKQYNPYAQDPAAADSLEKLGIESNPFSVRAHTHAAAKSIELDMYKITGY 84

Query: 2488 YLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVI--SRLENIPT 2315
             LPKENP++FLFMK +KL++FHRGP HGD FLNA +EPKDV RY  + +   S    I T
Sbjct: 85   SLPKENPITFLFMKRSKLQYFHRGPQHGDLFLNAWIEPKDVTRYNLEDLFKPSITPEIQT 144

Query: 2314 NIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDG 2135
             +AF+GDTLHFL    +  +F  S KLQTLYAT+VLPPEA++R+ S++P IY L + E  
Sbjct: 145  RVAFIGDTLHFLPLGAIREIFTSSQKLQTLYATMVLPPEAMHRMHSIHPSIYELEFHERN 204

Query: 2134 FMYIPGGHAGASYFHKYDQLEWLTVGHLT----APNQPTITAQRLETKGANHLFIFQRGN 1967
            F+Y PGGHAGASY H+Y QL+WL VG          +  +T+Q LETKGANHLF+FQRGN
Sbjct: 205  FIYKPGGHAGASYCHEYSQLQWLKVGKFEWCDKRYQKHYVTSQILETKGANHLFVFQRGN 264

Query: 1966 YLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKF 1787
            + TP  RTF     +VT+P IFLP+KYN R PI KT+  Q+F YIKSVK   ERDIWAK 
Sbjct: 265  FATPTYRTFGVETKFVTLPPIFLPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDIWAKV 324

Query: 1786 RQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVL 1607
            RQ+I T ELQ Y   E+ L+VNY+   + LDS TCF++VL+G  +++L +P+ +      
Sbjct: 325  RQIIKTAELQSYSAKELALIVNYYLLISKLDSVTCFDNVLTGGALKKLFKPIVAWWSTFK 384

Query: 1606 QFFRGRPSFVKLIKALDWQPITLEFPVRT 1520
                G+  F +L++AL+W  ++L + V T
Sbjct: 385  GALFGKEEFEQLMEALEWVDVSLSYKVET 413