BLASTX nr result
ID: Ephedra25_contig00008490
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra25_contig00008490
(593 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002300227.1| polyadenylate-binding family protein [Populu... 82 1e-13
ref|XP_002313862.1| polyadenylate-binding family protein [Populu... 80 3e-13
gb|ABK94932.1| unknown [Populus trichocarpa] 80 3e-13
ref|XP_006346392.1| PREDICTED: polyadenylate-binding protein 8-l... 78 2e-12
ref|XP_004230758.1| PREDICTED: polyadenylate-binding protein 2-l... 78 2e-12
gb|AFP74112.1| poly-A binding protein, partial [Nicotiana bentha... 77 3e-12
gb|AAF66824.1|AF190656_1 poly(A)-binding protein [Nicotiana taba... 77 3e-12
gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana taba... 77 3e-12
emb|CBI32381.3| unnamed protein product [Vitis vinifera] 77 3e-12
ref|XP_002285190.1| PREDICTED: polyadenylate-binding protein 2 [... 77 3e-12
ref|XP_002888846.1| hypothetical protein ARALYDRAFT_339396 [Arab... 76 6e-12
ref|XP_006574897.1| PREDICTED: polyadenylate-binding protein 8-l... 75 1e-11
ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 8-l... 75 1e-11
ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana... 75 1e-11
ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata s... 75 1e-11
ref|XP_006342637.1| PREDICTED: polyadenylate-binding protein 8-l... 75 2e-11
ref|XP_004252758.1| PREDICTED: polyadenylate-binding protein 2-l... 75 2e-11
ref|XP_004292506.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylat... 74 2e-11
ref|XP_002863435.1| predicted protein [Arabidopsis lyrata subsp.... 74 2e-11
gb|EMJ02396.1| hypothetical protein PRUPE_ppa002607mg [Prunus pe... 74 3e-11
>ref|XP_002300227.1| polyadenylate-binding family protein [Populus trichocarpa]
gi|222847485|gb|EEE85032.1| polyadenylate-binding family
protein [Populus trichocarpa]
Length = 644
Score = 81.6 bits (200), Expect = 1e-13
Identities = 39/57 (68%), Positives = 46/57 (80%)
Frame = -1
Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLRLSQTSVTNTAD 423
+ QLEPE AAK+TGMLLEMDQ E+LH++ESPE L+AKV EAM+VLR Q T TAD
Sbjct: 575 VEQLEPEAAAKVTGMLLEMDQTEVLHLLESPEALKAKVNEAMEVLRTVQQQATGTAD 631
>ref|XP_002313862.1| polyadenylate-binding family protein [Populus trichocarpa]
gi|222850270|gb|EEE87817.1| polyadenylate-binding family
protein [Populus trichocarpa]
Length = 642
Score = 80.5 bits (197), Expect = 3e-13
Identities = 38/57 (66%), Positives = 46/57 (80%)
Frame = -1
Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLRLSQTSVTNTAD 423
+ QLEPE AAK+TGMLLEMDQ E+LH++ESPE L++KV EAM+VLR Q T TAD
Sbjct: 573 VEQLEPEAAAKVTGMLLEMDQTEVLHLLESPEALKSKVNEAMEVLRTVQQQATGTAD 629
>gb|ABK94932.1| unknown [Populus trichocarpa]
Length = 408
Score = 80.5 bits (197), Expect = 3e-13
Identities = 38/57 (66%), Positives = 46/57 (80%)
Frame = -1
Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLRLSQTSVTNTAD 423
+ QLEPE AAK+TGMLLEMDQ E+LH++ESPE L++KV EAM+VLR Q T TAD
Sbjct: 339 VEQLEPEAAAKVTGMLLEMDQTEVLHLLESPEALKSKVNEAMEVLRTVQQQATGTAD 395
>ref|XP_006346392.1| PREDICTED: polyadenylate-binding protein 8-like [Solanum tuberosum]
Length = 643
Score = 78.2 bits (191), Expect = 2e-12
Identities = 39/58 (67%), Positives = 47/58 (81%), Gaps = 1/58 (1%)
Frame = -1
Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLR-LSQTSVTNTAD 423
+ QLEPE AAK+TGMLLEMDQ E+LH++ESPE L+AKV EAMDVLR + Q +N AD
Sbjct: 573 VEQLEPETAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVPQQQASNAAD 630
>ref|XP_004230758.1| PREDICTED: polyadenylate-binding protein 2-like [Solanum
lycopersicum]
Length = 643
Score = 78.2 bits (191), Expect = 2e-12
Identities = 39/58 (67%), Positives = 47/58 (81%), Gaps = 1/58 (1%)
Frame = -1
Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLR-LSQTSVTNTAD 423
+ QLEPE AAK+TGMLLEMDQ E+LH++ESPE L+AKV EAMDVLR + Q +N AD
Sbjct: 573 VEQLEPETAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVPQQQASNAAD 630
>gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 77.4 bits (189), Expect = 3e-12
Identities = 39/58 (67%), Positives = 48/58 (82%), Gaps = 1/58 (1%)
Frame = -1
Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLR-LSQTSVTNTAD 423
+ QLEPE AAK+TGMLLEMDQ E+LH++ESPE L+AKV EAM+VLR +SQ +N AD
Sbjct: 573 VEQLEPETAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVSQQQSSNPAD 630
>gb|AAF66824.1|AF190656_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 330
Score = 77.4 bits (189), Expect = 3e-12
Identities = 39/58 (67%), Positives = 48/58 (82%), Gaps = 1/58 (1%)
Frame = -1
Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLR-LSQTSVTNTAD 423
+ QLEPE AAK+TGMLLEMDQ E+LH++ESPE L+AKV EAM+VLR +SQ +N AD
Sbjct: 260 VEQLEPETAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVSQQQSSNPAD 317
>gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 77.4 bits (189), Expect = 3e-12
Identities = 39/58 (67%), Positives = 48/58 (82%), Gaps = 1/58 (1%)
Frame = -1
Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLR-LSQTSVTNTAD 423
+ QLEPE AAK+TGMLLEMDQ E+LH++ESPE L+AKV EAM+VLR +SQ +N AD
Sbjct: 579 VEQLEPETAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVSQQQSSNPAD 636
>emb|CBI32381.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 77.4 bits (189), Expect = 3e-12
Identities = 38/59 (64%), Positives = 47/59 (79%), Gaps = 2/59 (3%)
Frame = -1
Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLR--LSQTSVTNTAD 423
+ QLEPE+AAK+TGMLLEMDQ E+LH++ESP+ L+AKV EAM+VLR Q TN AD
Sbjct: 700 VEQLEPEMAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRNVAQQQQATNAAD 758
>ref|XP_002285190.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147839912|emb|CAN65906.1| hypothetical protein
VITISV_004873 [Vitis vinifera]
Length = 648
Score = 77.4 bits (189), Expect = 3e-12
Identities = 38/59 (64%), Positives = 47/59 (79%), Gaps = 2/59 (3%)
Frame = -1
Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLR--LSQTSVTNTAD 423
+ QLEPE+AAK+TGMLLEMDQ E+LH++ESP+ L+AKV EAM+VLR Q TN AD
Sbjct: 582 VEQLEPEMAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRNVAQQQQATNAAD 640
>ref|XP_002888846.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata] gi|297334687|gb|EFH65105.1| hypothetical protein
ARALYDRAFT_339396 [Arabidopsis lyrata subsp. lyrata]
Length = 685
Score = 76.3 bits (186), Expect = 6e-12
Identities = 37/48 (77%), Positives = 43/48 (89%)
Frame = -1
Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLRLS 450
+AQ EPE AAK+TGMLLEMDQ EILH++ESPE L+AKV EA+DVLRLS
Sbjct: 619 VAQQEPEYAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVLRLS 666
>ref|XP_006574897.1| PREDICTED: polyadenylate-binding protein 8-like [Glycine max]
Length = 648
Score = 75.5 bits (184), Expect = 1e-11
Identities = 38/58 (65%), Positives = 47/58 (81%), Gaps = 1/58 (1%)
Frame = -1
Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLR-LSQTSVTNTAD 423
+ QLEP+ AAK+TGMLLEMDQ E+LH++ESPE L+AKV EAMDVLR ++Q TAD
Sbjct: 578 VEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQAGGTAD 635
>ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 8-like [Glycine max]
Length = 651
Score = 75.5 bits (184), Expect = 1e-11
Identities = 38/58 (65%), Positives = 47/58 (81%), Gaps = 1/58 (1%)
Frame = -1
Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLR-LSQTSVTNTAD 423
+ QLEP+ AAK+TGMLLEMDQ E+LH++ESPE L+AKV EAMDVLR ++Q TAD
Sbjct: 581 VEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQAGGTAD 638
>ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|334183191|ref|NP_001185184.1| poly(A) binding protein
8 [Arabidopsis thaliana]
gi|75334461|sp|Q9FXA2.1|PABP8_ARATH RecName:
Full=Polyadenylate-binding protein 8; Short=PABP-8;
Short=Poly(A)-binding protein 8
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A
Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A
Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding
Protein [Arabidopsis thaliana]
gi|332194351|gb|AEE32472.1| poly(A) binding protein 8
[Arabidopsis thaliana] gi|332194352|gb|AEE32473.1|
poly(A) binding protein 8 [Arabidopsis thaliana]
Length = 671
Score = 75.1 bits (183), Expect = 1e-11
Identities = 38/58 (65%), Positives = 46/58 (79%), Gaps = 1/58 (1%)
Frame = -1
Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLR-LSQTSVTNTAD 423
+ QLEPE AAK+TGMLLEMDQ E+LH++ESPE L+AKV EAMDVLR ++Q AD
Sbjct: 601 VEQLEPESAAKVTGMLLEMDQTEVLHLLESPEALKAKVTEAMDVLRSVAQQQAGGAAD 658
>ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
gi|297337373|gb|EFH67790.1| PAB8 binding protein 8
[Arabidopsis lyrata subsp. lyrata]
Length = 669
Score = 75.1 bits (183), Expect = 1e-11
Identities = 38/58 (65%), Positives = 46/58 (79%), Gaps = 1/58 (1%)
Frame = -1
Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLR-LSQTSVTNTAD 423
+ QLEPE AAK+TGMLLEMDQ E+LH++ESPE L+AKV EAMDVLR ++Q AD
Sbjct: 599 VEQLEPESAAKVTGMLLEMDQTEVLHLLESPEALKAKVTEAMDVLRSVAQQQAGGAAD 656
>ref|XP_006342637.1| PREDICTED: polyadenylate-binding protein 8-like [Solanum tuberosum]
Length = 665
Score = 74.7 bits (182), Expect = 2e-11
Identities = 37/57 (64%), Positives = 46/57 (80%)
Frame = -1
Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLRLSQTSVTNTAD 423
+ QLE E AAK+TGMLLEMDQ E+LH++ESPE L+AKV EAMDVLR Q + ++ AD
Sbjct: 596 VDQLEHEHAAKVTGMLLEMDQTEVLHLLESPEALKAKVSEAMDVLRNVQQATSSPAD 652
>ref|XP_004252758.1| PREDICTED: polyadenylate-binding protein 2-like [Solanum
lycopersicum]
Length = 666
Score = 74.7 bits (182), Expect = 2e-11
Identities = 37/57 (64%), Positives = 46/57 (80%)
Frame = -1
Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLRLSQTSVTNTAD 423
+ QLE E AAK+TGMLLEMDQ E+LH++ESPE L+AKV EAMDVLR Q + ++ AD
Sbjct: 597 VDQLEHEHAAKVTGMLLEMDQTEVLHLLESPEALKAKVSEAMDVLRNVQQATSSPAD 653
>ref|XP_004292506.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
5-like [Fragaria vesca subsp. vesca]
Length = 635
Score = 74.3 bits (181), Expect = 2e-11
Identities = 37/57 (64%), Positives = 47/57 (82%)
Frame = -1
Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLRLSQTSVTNTAD 423
+ ++EPEL AK+TGMLLEMDQ E+LH+IESP+ L+ KV EAMDVLR + TS T+ AD
Sbjct: 572 VERIEPELTAKVTGMLLEMDQTEVLHLIESPDALKDKVAEAMDVLR-NATSKTDVAD 627
>ref|XP_002863435.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297309270|gb|EFH39694.1| predicted protein
[Arabidopsis lyrata subsp. lyrata]
Length = 341
Score = 74.3 bits (181), Expect = 2e-11
Identities = 35/46 (76%), Positives = 41/46 (89%)
Frame = -1
Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLR 456
+ QLEPE AAK+TGMLLEMDQ E+LH++ESPE L+AKV EAMDVLR
Sbjct: 283 VEQLEPESAAKVTGMLLEMDQTEVLHLLESPEALKAKVTEAMDVLR 328
>gb|EMJ02396.1| hypothetical protein PRUPE_ppa002607mg [Prunus persica]
Length = 653
Score = 73.9 bits (180), Expect = 3e-11
Identities = 38/59 (64%), Positives = 45/59 (76%), Gaps = 2/59 (3%)
Frame = -1
Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLR--LSQTSVTNTAD 423
+ QLEPE AAK+TGMLLEMDQ E+LH++ESPE L+AKV EAM+VLR Q N AD
Sbjct: 582 VEQLEPENAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNAAD 640