BLASTX nr result

ID: Ephedra25_contig00008490 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00008490
         (593 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002300227.1| polyadenylate-binding family protein [Populu...    82   1e-13
ref|XP_002313862.1| polyadenylate-binding family protein [Populu...    80   3e-13
gb|ABK94932.1| unknown [Populus trichocarpa]                           80   3e-13
ref|XP_006346392.1| PREDICTED: polyadenylate-binding protein 8-l...    78   2e-12
ref|XP_004230758.1| PREDICTED: polyadenylate-binding protein 2-l...    78   2e-12
gb|AFP74112.1| poly-A binding protein, partial [Nicotiana bentha...    77   3e-12
gb|AAF66824.1|AF190656_1 poly(A)-binding protein [Nicotiana taba...    77   3e-12
gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana taba...    77   3e-12
emb|CBI32381.3| unnamed protein product [Vitis vinifera]               77   3e-12
ref|XP_002285190.1| PREDICTED: polyadenylate-binding protein 2 [...    77   3e-12
ref|XP_002888846.1| hypothetical protein ARALYDRAFT_339396 [Arab...    76   6e-12
ref|XP_006574897.1| PREDICTED: polyadenylate-binding protein 8-l...    75   1e-11
ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 8-l...    75   1e-11
ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana...    75   1e-11
ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata s...    75   1e-11
ref|XP_006342637.1| PREDICTED: polyadenylate-binding protein 8-l...    75   2e-11
ref|XP_004252758.1| PREDICTED: polyadenylate-binding protein 2-l...    75   2e-11
ref|XP_004292506.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylat...    74   2e-11
ref|XP_002863435.1| predicted protein [Arabidopsis lyrata subsp....    74   2e-11
gb|EMJ02396.1| hypothetical protein PRUPE_ppa002607mg [Prunus pe...    74   3e-11

>ref|XP_002300227.1| polyadenylate-binding family protein [Populus trichocarpa]
           gi|222847485|gb|EEE85032.1| polyadenylate-binding family
           protein [Populus trichocarpa]
          Length = 644

 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 39/57 (68%), Positives = 46/57 (80%)
 Frame = -1

Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLRLSQTSVTNTAD 423
           + QLEPE AAK+TGMLLEMDQ E+LH++ESPE L+AKV EAM+VLR  Q   T TAD
Sbjct: 575 VEQLEPEAAAKVTGMLLEMDQTEVLHLLESPEALKAKVNEAMEVLRTVQQQATGTAD 631


>ref|XP_002313862.1| polyadenylate-binding family protein [Populus trichocarpa]
           gi|222850270|gb|EEE87817.1| polyadenylate-binding family
           protein [Populus trichocarpa]
          Length = 642

 Score = 80.5 bits (197), Expect = 3e-13
 Identities = 38/57 (66%), Positives = 46/57 (80%)
 Frame = -1

Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLRLSQTSVTNTAD 423
           + QLEPE AAK+TGMLLEMDQ E+LH++ESPE L++KV EAM+VLR  Q   T TAD
Sbjct: 573 VEQLEPEAAAKVTGMLLEMDQTEVLHLLESPEALKSKVNEAMEVLRTVQQQATGTAD 629


>gb|ABK94932.1| unknown [Populus trichocarpa]
          Length = 408

 Score = 80.5 bits (197), Expect = 3e-13
 Identities = 38/57 (66%), Positives = 46/57 (80%)
 Frame = -1

Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLRLSQTSVTNTAD 423
           + QLEPE AAK+TGMLLEMDQ E+LH++ESPE L++KV EAM+VLR  Q   T TAD
Sbjct: 339 VEQLEPEAAAKVTGMLLEMDQTEVLHLLESPEALKSKVNEAMEVLRTVQQQATGTAD 395


>ref|XP_006346392.1| PREDICTED: polyadenylate-binding protein 8-like [Solanum tuberosum]
          Length = 643

 Score = 78.2 bits (191), Expect = 2e-12
 Identities = 39/58 (67%), Positives = 47/58 (81%), Gaps = 1/58 (1%)
 Frame = -1

Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLR-LSQTSVTNTAD 423
           + QLEPE AAK+TGMLLEMDQ E+LH++ESPE L+AKV EAMDVLR + Q   +N AD
Sbjct: 573 VEQLEPETAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVPQQQASNAAD 630


>ref|XP_004230758.1| PREDICTED: polyadenylate-binding protein 2-like [Solanum
           lycopersicum]
          Length = 643

 Score = 78.2 bits (191), Expect = 2e-12
 Identities = 39/58 (67%), Positives = 47/58 (81%), Gaps = 1/58 (1%)
 Frame = -1

Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLR-LSQTSVTNTAD 423
           + QLEPE AAK+TGMLLEMDQ E+LH++ESPE L+AKV EAMDVLR + Q   +N AD
Sbjct: 573 VEQLEPETAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVPQQQASNAAD 630


>gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
          Length = 643

 Score = 77.4 bits (189), Expect = 3e-12
 Identities = 39/58 (67%), Positives = 48/58 (82%), Gaps = 1/58 (1%)
 Frame = -1

Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLR-LSQTSVTNTAD 423
           + QLEPE AAK+TGMLLEMDQ E+LH++ESPE L+AKV EAM+VLR +SQ   +N AD
Sbjct: 573 VEQLEPETAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVSQQQSSNPAD 630


>gb|AAF66824.1|AF190656_1 poly(A)-binding protein [Nicotiana tabacum]
          Length = 330

 Score = 77.4 bits (189), Expect = 3e-12
 Identities = 39/58 (67%), Positives = 48/58 (82%), Gaps = 1/58 (1%)
 Frame = -1

Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLR-LSQTSVTNTAD 423
           + QLEPE AAK+TGMLLEMDQ E+LH++ESPE L+AKV EAM+VLR +SQ   +N AD
Sbjct: 260 VEQLEPETAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVSQQQSSNPAD 317


>gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
          Length = 649

 Score = 77.4 bits (189), Expect = 3e-12
 Identities = 39/58 (67%), Positives = 48/58 (82%), Gaps = 1/58 (1%)
 Frame = -1

Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLR-LSQTSVTNTAD 423
           + QLEPE AAK+TGMLLEMDQ E+LH++ESPE L+AKV EAM+VLR +SQ   +N AD
Sbjct: 579 VEQLEPETAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVSQQQSSNPAD 636


>emb|CBI32381.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score = 77.4 bits (189), Expect = 3e-12
 Identities = 38/59 (64%), Positives = 47/59 (79%), Gaps = 2/59 (3%)
 Frame = -1

Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLR--LSQTSVTNTAD 423
           + QLEPE+AAK+TGMLLEMDQ E+LH++ESP+ L+AKV EAM+VLR    Q   TN AD
Sbjct: 700 VEQLEPEMAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRNVAQQQQATNAAD 758


>ref|XP_002285190.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
           gi|147839912|emb|CAN65906.1| hypothetical protein
           VITISV_004873 [Vitis vinifera]
          Length = 648

 Score = 77.4 bits (189), Expect = 3e-12
 Identities = 38/59 (64%), Positives = 47/59 (79%), Gaps = 2/59 (3%)
 Frame = -1

Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLR--LSQTSVTNTAD 423
           + QLEPE+AAK+TGMLLEMDQ E+LH++ESP+ L+AKV EAM+VLR    Q   TN AD
Sbjct: 582 VEQLEPEMAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRNVAQQQQATNAAD 640


>ref|XP_002888846.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
           lyrata] gi|297334687|gb|EFH65105.1| hypothetical protein
           ARALYDRAFT_339396 [Arabidopsis lyrata subsp. lyrata]
          Length = 685

 Score = 76.3 bits (186), Expect = 6e-12
 Identities = 37/48 (77%), Positives = 43/48 (89%)
 Frame = -1

Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLRLS 450
           +AQ EPE AAK+TGMLLEMDQ EILH++ESPE L+AKV EA+DVLRLS
Sbjct: 619 VAQQEPEYAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVLRLS 666


>ref|XP_006574897.1| PREDICTED: polyadenylate-binding protein 8-like [Glycine max]
          Length = 648

 Score = 75.5 bits (184), Expect = 1e-11
 Identities = 38/58 (65%), Positives = 47/58 (81%), Gaps = 1/58 (1%)
 Frame = -1

Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLR-LSQTSVTNTAD 423
           + QLEP+ AAK+TGMLLEMDQ E+LH++ESPE L+AKV EAMDVLR ++Q     TAD
Sbjct: 578 VEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQAGGTAD 635


>ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 8-like [Glycine max]
          Length = 651

 Score = 75.5 bits (184), Expect = 1e-11
 Identities = 38/58 (65%), Positives = 47/58 (81%), Gaps = 1/58 (1%)
 Frame = -1

Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLR-LSQTSVTNTAD 423
           + QLEP+ AAK+TGMLLEMDQ E+LH++ESPE L+AKV EAMDVLR ++Q     TAD
Sbjct: 581 VEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQAGGTAD 638


>ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
           gi|334183191|ref|NP_001185184.1| poly(A) binding protein
           8 [Arabidopsis thaliana]
           gi|75334461|sp|Q9FXA2.1|PABP8_ARATH RecName:
           Full=Polyadenylate-binding protein 8; Short=PABP-8;
           Short=Poly(A)-binding protein 8
           gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A
           Binding Protein [Arabidopsis thaliana]
           gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A
           Binding Protein [Arabidopsis thaliana]
           gi|17978685|gb|AAL47336.1| putative Poly-A Binding
           Protein [Arabidopsis thaliana]
           gi|332194351|gb|AEE32472.1| poly(A) binding protein 8
           [Arabidopsis thaliana] gi|332194352|gb|AEE32473.1|
           poly(A) binding protein 8 [Arabidopsis thaliana]
          Length = 671

 Score = 75.1 bits (183), Expect = 1e-11
 Identities = 38/58 (65%), Positives = 46/58 (79%), Gaps = 1/58 (1%)
 Frame = -1

Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLR-LSQTSVTNTAD 423
           + QLEPE AAK+TGMLLEMDQ E+LH++ESPE L+AKV EAMDVLR ++Q      AD
Sbjct: 601 VEQLEPESAAKVTGMLLEMDQTEVLHLLESPEALKAKVTEAMDVLRSVAQQQAGGAAD 658


>ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
           gi|297337373|gb|EFH67790.1| PAB8 binding protein 8
           [Arabidopsis lyrata subsp. lyrata]
          Length = 669

 Score = 75.1 bits (183), Expect = 1e-11
 Identities = 38/58 (65%), Positives = 46/58 (79%), Gaps = 1/58 (1%)
 Frame = -1

Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLR-LSQTSVTNTAD 423
           + QLEPE AAK+TGMLLEMDQ E+LH++ESPE L+AKV EAMDVLR ++Q      AD
Sbjct: 599 VEQLEPESAAKVTGMLLEMDQTEVLHLLESPEALKAKVTEAMDVLRSVAQQQAGGAAD 656


>ref|XP_006342637.1| PREDICTED: polyadenylate-binding protein 8-like [Solanum tuberosum]
          Length = 665

 Score = 74.7 bits (182), Expect = 2e-11
 Identities = 37/57 (64%), Positives = 46/57 (80%)
 Frame = -1

Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLRLSQTSVTNTAD 423
           + QLE E AAK+TGMLLEMDQ E+LH++ESPE L+AKV EAMDVLR  Q + ++ AD
Sbjct: 596 VDQLEHEHAAKVTGMLLEMDQTEVLHLLESPEALKAKVSEAMDVLRNVQQATSSPAD 652


>ref|XP_004252758.1| PREDICTED: polyadenylate-binding protein 2-like [Solanum
           lycopersicum]
          Length = 666

 Score = 74.7 bits (182), Expect = 2e-11
 Identities = 37/57 (64%), Positives = 46/57 (80%)
 Frame = -1

Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLRLSQTSVTNTAD 423
           + QLE E AAK+TGMLLEMDQ E+LH++ESPE L+AKV EAMDVLR  Q + ++ AD
Sbjct: 597 VDQLEHEHAAKVTGMLLEMDQTEVLHLLESPEALKAKVSEAMDVLRNVQQATSSPAD 653


>ref|XP_004292506.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
           5-like [Fragaria vesca subsp. vesca]
          Length = 635

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 37/57 (64%), Positives = 47/57 (82%)
 Frame = -1

Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLRLSQTSVTNTAD 423
           + ++EPEL AK+TGMLLEMDQ E+LH+IESP+ L+ KV EAMDVLR + TS T+ AD
Sbjct: 572 VERIEPELTAKVTGMLLEMDQTEVLHLIESPDALKDKVAEAMDVLR-NATSKTDVAD 627


>ref|XP_002863435.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297309270|gb|EFH39694.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 341

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 35/46 (76%), Positives = 41/46 (89%)
 Frame = -1

Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLR 456
           + QLEPE AAK+TGMLLEMDQ E+LH++ESPE L+AKV EAMDVLR
Sbjct: 283 VEQLEPESAAKVTGMLLEMDQTEVLHLLESPEALKAKVTEAMDVLR 328


>gb|EMJ02396.1| hypothetical protein PRUPE_ppa002607mg [Prunus persica]
          Length = 653

 Score = 73.9 bits (180), Expect = 3e-11
 Identities = 38/59 (64%), Positives = 45/59 (76%), Gaps = 2/59 (3%)
 Frame = -1

Query: 593 IAQLEPELAAKITGMLLEMDQNEILHIIESPEDLRAKVQEAMDVLR--LSQTSVTNTAD 423
           + QLEPE AAK+TGMLLEMDQ E+LH++ESPE L+AKV EAM+VLR    Q    N AD
Sbjct: 582 VEQLEPENAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNAAD 640


Top