BLASTX nr result

ID: Ephedra25_contig00007059 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00007059
         (561 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACN39861.1| unknown [Picea sitchensis]                              59   8e-07
ref|XP_002310394.2| hypothetical protein POPTR_0007s00670g, part...    55   9e-06

>gb|ACN39861.1| unknown [Picea sitchensis]
          Length = 1011

 Score = 58.9 bits (141), Expect = 8e-07
 Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 6/162 (3%)
 Frame = -3

Query: 535 FDLLSDDCKRTFLDICMFFVGGRWDFACYCFGDEAMEDLTERFLIQRSDKDSGTVTVHDI 356
           +D L +DCK  FLDIC +F G  W+      G   ++ L +R LI ++   +G ++VHD+
Sbjct: 545 YDKLPEDCKDPFLDICSYFEGWDWEIVANIMGGRELKMLADRALITKN--TNGVISVHDV 602

Query: 355 YRSISLERLKSEKSYFSLDSSNLGEGDDGCVELKDVSEDEDLSLEKLQGLSIS-----LA 191
              ++L R KSE   F   S        G    K + + ++  ++K++G+  S     L+
Sbjct: 603 I--LTLGRRKSEGVRFMFIS--------GSQFKKFLDKKKEEEIQKIKGIWFSENKDLLS 652

Query: 190 DDRNISLDPHK-LRSLRLFQIAKAKLEIKNEKGKAFQKLEYF 68
               I    HK LR LRL ++ K    I+ +  + F+ L +F
Sbjct: 653 ISATILDSMHKSLRILRLGKLTK----IEGKCSEIFESLIFF 690


>ref|XP_002310394.2| hypothetical protein POPTR_0007s00670g, partial [Populus
           trichocarpa] gi|550333835|gb|EEE90844.2| hypothetical
           protein POPTR_0007s00670g, partial [Populus trichocarpa]
          Length = 547

 Score = 55.5 bits (132), Expect = 9e-06
 Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 11/159 (6%)
 Frame = -3

Query: 559 VERILSSVFDLLSDDC-KRTFLDICMFFVGGRWDFACYC----FGDEAMED---LTERFL 404
           +++ L   FD L +   K TFLDI  FF+G + ++        +G    +D   L ER L
Sbjct: 98  IQKKLRISFDTLDESTLKNTFLDIACFFIGRKKEYVAKVLEGRYGYNPEDDFGTLIERSL 157

Query: 403 IQRSDKDSGTVTVHDIYRSISLERLKSEKSYFSLDSSNLGEGDDGCVELKDVSEDEDLSL 224
           I+  D  SGT+ +HD+ R +  E +K E        S +   +D  + LK       +  
Sbjct: 158 IKVDD--SGTIDMHDLLRGMGREIVKEESPENPAQRSRIWSQEDAWIVLK-----MQMGT 210

Query: 223 EKLQGLSISL--ADDRNISLDPH-KLRSLRLFQIAKAKL 116
           E ++GL++ +  ++D+++S     K+++L+L QI  A+L
Sbjct: 211 EVVKGLTLDVRRSEDKSLSTGSFTKMKNLKLLQIDGAEL 249


Top