BLASTX nr result
ID: Ephedra25_contig00006722
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra25_contig00006722
(1578 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EOY11969.1| RNA polymerase I subunit 43 isoform 1 [Theobroma ... 501 e-139
ref|XP_002270559.1| PREDICTED: DNA-directed RNA polymerases I an... 492 e-136
ref|XP_004251939.1| PREDICTED: DNA-directed RNA polymerases I an... 484 e-134
ref|XP_006344900.1| PREDICTED: DNA-directed RNA polymerases I an... 483 e-134
ref|XP_001773900.1| predicted protein [Physcomitrella patens] gi... 483 e-134
ref|XP_006452630.1| hypothetical protein CICLE_v10008413mg [Citr... 477 e-132
ref|XP_006474843.1| PREDICTED: DNA-directed RNA polymerases I an... 476 e-131
ref|XP_002968425.1| hypothetical protein SELMODRAFT_409226 [Sela... 475 e-131
ref|XP_002970586.1| hypothetical protein SELMODRAFT_231624 [Sela... 474 e-131
ref|XP_002522786.1| DNA-directed RNA polymerase I/III subunits, ... 470 e-130
ref|NP_001242652.1| uncharacterized protein LOC100786622 [Glycin... 469 e-129
ref|XP_003532185.1| PREDICTED: DNA-directed RNA polymerases I an... 469 e-129
ref|XP_004148257.1| PREDICTED: DNA-directed RNA polymerases I an... 462 e-127
gb|EPS59249.1| hypothetical protein M569_15560, partial [Genlise... 459 e-126
ref|XP_002888129.1| ATRPAC43 [Arabidopsis lyrata subsp. lyrata] ... 457 e-126
ref|NP_176261.1| RNA polymerase I subunit 43 [Arabidopsis thalia... 456 e-125
ref|XP_004488284.1| PREDICTED: DNA-directed RNA polymerases I an... 456 e-125
ref|XP_002300385.1| DNA-directed RNA polymerase family protein [... 452 e-124
ref|XP_004498147.1| PREDICTED: DNA-directed RNA polymerases I an... 452 e-124
ref|XP_006414263.1| hypothetical protein EUTSA_v10025407mg [Eutr... 444 e-122
>gb|EOY11969.1| RNA polymerase I subunit 43 isoform 1 [Theobroma cacao]
Length = 383
Score = 501 bits (1289), Expect = e-139
Identities = 257/377 (68%), Positives = 290/377 (76%), Gaps = 5/377 (1%)
Frame = +3
Query: 216 KKKPMAMDMDDVPKGKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSE 395
KKK D+ DVP G+LPPHLELQRTRV+C DAPIHTE V YSGAYA+ GVDNSLRL
Sbjct: 12 KKKFSIWDLPDVPAGQLPPHLELQRTRVLCNKDAPIHTESVLYSGAYASMGVDNSLRLDH 71
Query: 396 FCKNFRIEVTTLNDETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDE 575
FC NFR+EV L +E +EFDM+GIDA+IANAFRRIL+AE+PTMAIEKVLI NNTSV+QDE
Sbjct: 72 FCHNFRVEVVRLTEEDMEFDMIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVVQDE 131
Query: 576 VLAHRLGLIPIKVDPRLFEYKSDGDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQL 755
VLAHRLGLIPI VDPRLFEY S+ D NEKNTIVFKL+V C + T VK+D+L
Sbjct: 132 VLAHRLGLIPISVDPRLFEYMSENDQPNEKNTIVFKLHVHCKRGSPRIT-----VKSDEL 186
Query: 756 KWMPNGSEY----EKPXXXXXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIIIAKLRPG 923
KW+PNGSE K QDTLP A PI P Y DIII+KL PG
Sbjct: 187 KWLPNGSELIKESRKVASDSASKPETYTSFSCSQDTLPEFANNPIAPKYPDIIISKLGPG 246
Query: 924 QAIDLEAHAVKGQGKVHAKWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIE 1103
Q I+LEAHAVKG GK HAKWSPVATA YRMLPEV LLEE+E AE L ++CPV VFDIE
Sbjct: 247 QEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEVEDDLAEGLKSKCPVNVFDIE 306
Query: 1104 DVA-GKKKAKVARPRDCTLCRECIRGDDWEKRVQLRRIKEHFIFTIESTGALPPEVLFTE 1280
D+ GKK+A VARPR CTLCRECIR ++WEKRV + R+K+HFIFTIESTGALPPEVLFTE
Sbjct: 307 DLGKGKKRATVARPRACTLCRECIRDEEWEKRVAIHRVKDHFIFTIESTGALPPEVLFTE 366
Query: 1281 AVKILEEKCERILAELS 1331
AVKILE+KCER++ ELS
Sbjct: 367 AVKILEDKCERVITELS 383
>ref|XP_002270559.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Vitis vinifera] gi|296089944|emb|CBI39763.3| unnamed
protein product [Vitis vinifera]
Length = 372
Score = 492 bits (1266), Expect = e-136
Identities = 246/372 (66%), Positives = 292/372 (78%), Gaps = 5/372 (1%)
Frame = +3
Query: 231 AMDMDDVPKGKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSEFCKNF 410
A+DM DVPKG+LPPH+ELQRTRV+C DAP HTE VQYSGAY++ GVDNSLR+ +FC NF
Sbjct: 6 ALDMPDVPKGQLPPHIELQRTRVLCNFDAPTHTENVQYSGAYSSMGVDNSLRMDQFCNNF 65
Query: 411 RIEVTTLNDETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDEVLAHR 590
R+EV L+++ +EFDM+GID SIANAFRRIL+AE+PTMAIEKVLI NNTS++QDEVLAHR
Sbjct: 66 RVEVIRLSEDDMEFDMIGIDPSIANAFRRILIAELPTMAIEKVLIANNTSIVQDEVLAHR 125
Query: 591 LGLIPIKVDPRLFEYKSDGDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQLKWMPN 770
LGLIPI DPRLF+ S+ D NEKNTIVF L+V+C + T VK+++LKW+P+
Sbjct: 126 LGLIPINADPRLFDDLSENDTPNEKNTIVFNLHVRCERGGPRLT-----VKSNELKWLPH 180
Query: 771 GSEY----EKPXXXXXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIIIAKLRPGQAIDL 938
GSE+ E QD+LP +++ I P + DIIIAKL PGQ I+L
Sbjct: 181 GSEFPLATENTTSSSTSKPKTYTSFSCSQDSLPEFSDKSIGPKHPDIIIAKLGPGQEIEL 240
Query: 939 EAHAVKGQGKVHAKWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIEDVA-G 1115
EAHAVKG GK HAKWSPVATA YRMLPEV LL+EIE AE+LV +CPV VFDIED+A G
Sbjct: 241 EAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLQEIEDEKAEELVKKCPVNVFDIEDIAKG 300
Query: 1116 KKKAKVARPRDCTLCRECIRGDDWEKRVQLRRIKEHFIFTIESTGALPPEVLFTEAVKIL 1295
KKKA VARPR CTLCRECIRGDDW+K V +RR+K HFIFTIESTGALPPEVLF EAVK+L
Sbjct: 301 KKKATVARPRACTLCRECIRGDDWDKHVAIRRVKNHFIFTIESTGALPPEVLFNEAVKVL 360
Query: 1296 EEKCERILAELS 1331
E+KCER++ ELS
Sbjct: 361 EDKCERVITELS 372
>ref|XP_004251939.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1-like
[Solanum lycopersicum]
Length = 393
Score = 484 bits (1247), Expect = e-134
Identities = 246/375 (65%), Positives = 287/375 (76%), Gaps = 5/375 (1%)
Frame = +3
Query: 222 KPMAMDMDDVPKGKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSEFC 401
K D+ D+PKGKLPPH+ELQRTRV+C S AP +TE V YSGAYAA GVDNS+R +F
Sbjct: 24 KVSVWDLPDLPKGKLPPHIELQRTRVLCGSLAPTNTENVNYSGAYAAMGVDNSVRFEQFR 83
Query: 402 KNFRIEVTTLNDETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDEVL 581
NF++E+ L ++ +EFDM+GID S+ANAFRRIL+AE+PTMAIEKVLI NNTS+IQDEVL
Sbjct: 84 DNFKVEIVRLEEDELEFDMIGIDPSLANAFRRILIAELPTMAIEKVLIANNTSIIQDEVL 143
Query: 582 AHRLGLIPIKVDPRLFEYKSDGDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQLKW 761
AHRLGLIPIKVDPRLFEY S+ D NEKNTIVFKL+V+CTK D V + +LKW
Sbjct: 144 AHRLGLIPIKVDPRLFEYMSENDVPNEKNTIVFKLHVRCTKGSD-----RLRVLSSELKW 198
Query: 762 MPNGSEY----EKPXXXXXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIIIAKLRPGQA 929
+PNGSE E QDT P ++EPI P +DII+AKL PGQ
Sbjct: 199 LPNGSELILGTEHSASSSSAKPKTYTSFSCSQDTRPEFSDEPIAPKDADIIVAKLGPGQE 258
Query: 930 IDLEAHAVKGQGKVHAKWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIEDV 1109
I+LEAHAVKG GK HAKWSPVATA YRMLPEV LL +IE +AE LV +CP+KVFDIED+
Sbjct: 259 IELEAHAVKGMGKTHAKWSPVATAWYRMLPEVLLLRDIEDDEAEALVKKCPLKVFDIEDI 318
Query: 1110 A-GKKKAKVARPRDCTLCRECIRGDDWEKRVQLRRIKEHFIFTIESTGALPPEVLFTEAV 1286
GKK+A VARPR CTLCRECIR + W+K V LRR+ +HFIFTIESTGALPPEVLFTEAV
Sbjct: 319 GKGKKRATVARPRACTLCRECIREEGWDKNVALRRVNDHFIFTIESTGALPPEVLFTEAV 378
Query: 1287 KILEEKCERILAELS 1331
KILEEKCER++ ELS
Sbjct: 379 KILEEKCERVITELS 393
>ref|XP_006344900.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1-like
[Solanum tuberosum]
Length = 393
Score = 483 bits (1244), Expect = e-134
Identities = 245/375 (65%), Positives = 286/375 (76%), Gaps = 5/375 (1%)
Frame = +3
Query: 222 KPMAMDMDDVPKGKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSEFC 401
K D+ D+PKGKLPPH+ELQRTRV+C S AP +TE V YSGAYAA GVDNS+R +F
Sbjct: 24 KVSVWDLPDLPKGKLPPHIELQRTRVLCGSLAPTNTENVNYSGAYAAMGVDNSVRFEQFR 83
Query: 402 KNFRIEVTTLNDETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDEVL 581
NF++E+ L ++ +EFDM+GID S+ANAFRRIL+AE+PTMAIEKVLI NNTS+IQDEVL
Sbjct: 84 NNFKVEIVRLEEDELEFDMIGIDPSLANAFRRILIAELPTMAIEKVLIANNTSIIQDEVL 143
Query: 582 AHRLGLIPIKVDPRLFEYKSDGDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQLKW 761
AHRLGLIPI+VDPRLFEY S+ D NEKNTIVFKL+ +CTK D V + +LKW
Sbjct: 144 AHRLGLIPIEVDPRLFEYMSENDVPNEKNTIVFKLHARCTKGSD-----RLRVLSSELKW 198
Query: 762 MPNGSEY----EKPXXXXXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIIIAKLRPGQA 929
+PNGSE E QDTLP + +PI P +DII+AKL PGQ
Sbjct: 199 LPNGSELILGTEHSASSSSAKPKTYTSFSCSQDTLPEFSNDPIAPKDADIIVAKLGPGQE 258
Query: 930 IDLEAHAVKGQGKVHAKWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIEDV 1109
I+LEAHAVKG GK HAKWSPVATA YRMLPEV LL +IE +AE LV +CPVKVFDIED+
Sbjct: 259 IELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLRDIEDDEAEALVKKCPVKVFDIEDI 318
Query: 1110 A-GKKKAKVARPRDCTLCRECIRGDDWEKRVQLRRIKEHFIFTIESTGALPPEVLFTEAV 1286
GKK+A VARPR CTLCRECIR + W+K V LRR+ +HFIFTIESTGALPPEVLFTEAV
Sbjct: 319 GKGKKRATVARPRICTLCRECIREEGWDKNVALRRVNDHFIFTIESTGALPPEVLFTEAV 378
Query: 1287 KILEEKCERILAELS 1331
KILEEKCER++ ELS
Sbjct: 379 KILEEKCERVITELS 393
>ref|XP_001773900.1| predicted protein [Physcomitrella patens] gi|162674744|gb|EDQ61248.1|
predicted protein [Physcomitrella patens]
Length = 360
Score = 483 bits (1244), Expect = e-134
Identities = 242/357 (67%), Positives = 284/357 (79%)
Frame = +3
Query: 261 KLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSEFCKNFRIEVTTLNDE 440
+LPPHLELQRTRVVCA DAP +TE VQYSGAY A GVDNSLR+ +FCKN R+E+ ++N+E
Sbjct: 12 ELPPHLELQRTRVVCAPDAPSYTESVQYSGAYMAYGVDNSLRIEDFCKNLRVEIISMNEE 71
Query: 441 TVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDEVLAHRLGLIPIKVDP 620
+EFD+VGIDA+IANAFRRIL+AEVPTMAIEKV I NNTSVIQDEVLAHRLGL+PIK DP
Sbjct: 72 DIEFDIVGIDAAIANAFRRILIAEVPTMAIEKVYIANNTSVIQDEVLAHRLGLLPIKADP 131
Query: 621 RLFEYKSDGDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQLKWMPNGSEYEKPXXX 800
RLF+YKS+ + ANEKNTIVFK++V CT+ G+ +NS V +DQ+KW+P GSE
Sbjct: 132 RLFDYKSEEENANEKNTIVFKIDVVCTRK--GERVLNSSVTSDQMKWLPEGSEMP----- 184
Query: 801 XXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIIIAKLRPGQAIDLEAHAVKGQGKVHAK 980
Q LP + E I Y DII+AKLRPGQAI+LE HA+KG G +HAK
Sbjct: 185 -FNTMTKFTSFGSSQKNLPGLPAEGISCQYPDIIVAKLRPGQAIELEGHAIKGSGNIHAK 243
Query: 981 WSPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIEDVAGKKKAKVARPRDCTLC 1160
WSPVATARYRMLPEV L+E+I+G AE+LV +CP VFDIEDV KKA VARPR+CTLC
Sbjct: 244 WSPVATARYRMLPEVNLMEDIQGKLAEELVQKCPTGVFDIEDVGTVKKAIVARPRNCTLC 303
Query: 1161 RECIRGDDWEKRVQLRRIKEHFIFTIESTGALPPEVLFTEAVKILEEKCERILAELS 1331
REC+RG DW+KRVQL R+K+HFIFTIESTGAL PEVLFTEA+KIL EKC RI+ ELS
Sbjct: 304 RECVRGTDWDKRVQLTRVKDHFIFTIESTGALRPEVLFTEAIKILNEKCHRIITELS 360
>ref|XP_006452630.1| hypothetical protein CICLE_v10008413mg [Citrus clementina]
gi|557555856|gb|ESR65870.1| hypothetical protein
CICLE_v10008413mg [Citrus clementina]
Length = 421
Score = 477 bits (1227), Expect = e-132
Identities = 248/370 (67%), Positives = 286/370 (77%), Gaps = 5/370 (1%)
Frame = +3
Query: 237 DMDDVPKGKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSEFCKNFRI 416
D+ DVP+ KLPPH+E QRTRV C DAPIHTE V YSGAYA+ GVDNSL+L FC NFR+
Sbjct: 59 DLPDVPQ-KLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRV 117
Query: 417 EVTTLNDETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDEVLAHRLG 596
EV L + +EFD++GIDA+IANAFRRIL+AE+PTMAIEKVLI NNTSVIQDEVLAHRLG
Sbjct: 118 EVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLG 177
Query: 597 LIPIKVDPRLFEYKSDGDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQLKWMPNGS 776
LIPI VDPRLFEY S+ D +NEKNTIVFKL+V C + T VKT++LKW+PNGS
Sbjct: 178 LIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLT-----VKTNELKWLPNGS 232
Query: 777 EY---EKPXXXXXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIIIAKLRPGQAIDLEAH 947
E KP QD LP + PIRP DI IA+L PGQ I+LEAH
Sbjct: 233 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAH 291
Query: 948 AVKGQGKVHAKWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIEDV-AGKKK 1124
AVKG GK HAKWSPVATA YRMLPE+ LLE++E DAEKLV CPV VFDIED+ +GKK+
Sbjct: 292 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 351
Query: 1125 AKVARPRDCTLCRECIR-GDDWEKRVQLRRIKEHFIFTIESTGALPPEVLFTEAVKILEE 1301
A VARPR CTLCREC+R G++WEKRV +RR+K+HFIFTIESTGAL PE LFTEAVKILE+
Sbjct: 352 ATVARPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILED 411
Query: 1302 KCERILAELS 1331
KCER++ ELS
Sbjct: 412 KCERVITELS 421
>ref|XP_006474843.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1-like
[Citrus sinensis]
Length = 382
Score = 476 bits (1225), Expect = e-131
Identities = 247/370 (66%), Positives = 287/370 (77%), Gaps = 5/370 (1%)
Frame = +3
Query: 237 DMDDVPKGKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSEFCKNFRI 416
D+ DVP+ KLPPH+E QRTRV C DAPIHTE V YSGAYA+ GVDNSL+L FC NFR+
Sbjct: 20 DLPDVPQ-KLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRV 78
Query: 417 EVTTLNDETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDEVLAHRLG 596
EV L + +EFD++GIDA+IANAFRRIL+AE+PTMAIEKVLI NNTSVIQDEVLAHRLG
Sbjct: 79 EVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLG 138
Query: 597 LIPIKVDPRLFEYKSDGDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQLKWMPNGS 776
LIPI VDPRLFEY S+ D +NEKNTIVFKL+V C + T VKT++LKW+PNGS
Sbjct: 139 LIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLT-----VKTNELKWLPNGS 193
Query: 777 EY---EKPXXXXXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIIIAKLRPGQAIDLEAH 947
E KP QD+LP + PIRP DI IA+L PGQ I+LEAH
Sbjct: 194 ELPLETKPDSNPLSKPRTYTSFSSSQDSLPEFSNNPIRPML-DITIARLGPGQEIELEAH 252
Query: 948 AVKGQGKVHAKWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIEDV-AGKKK 1124
AVKG GK HAKWSPVATA YRMLPE+ LLE++E DAEKLV CPV VFDIED+ +GKK+
Sbjct: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
Query: 1125 AKVARPRDCTLCRECIR-GDDWEKRVQLRRIKEHFIFTIESTGALPPEVLFTEAVKILEE 1301
A VA+PR CTLCREC+R G++WEKRV +RR+K+HFIFTIESTGAL PE LFTEAVKILE+
Sbjct: 313 ATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILED 372
Query: 1302 KCERILAELS 1331
KCER++ ELS
Sbjct: 373 KCERVITELS 382
>ref|XP_002968425.1| hypothetical protein SELMODRAFT_409226 [Selaginella moellendorffii]
gi|300164069|gb|EFJ30679.1| hypothetical protein
SELMODRAFT_409226 [Selaginella moellendorffii]
Length = 352
Score = 475 bits (1223), Expect = e-131
Identities = 242/358 (67%), Positives = 281/358 (78%)
Frame = +3
Query: 258 GKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSEFCKNFRIEVTTLND 437
G LP HLELQRTRV+CASDAP +TE VQYSGAY++ DNSLRL +F +NF +E+ +L +
Sbjct: 5 GGLPAHLELQRTRVICASDAPSYTETVQYSGAYSSINYDNSLRLGDFRRNFHVEIKSLTE 64
Query: 438 ETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDEVLAHRLGLIPIKVD 617
+ +EFDM+GIDA++ANAFRRIL+AEVPTMAIEKVLI +NTSVIQDEV AHRLGL+PIK D
Sbjct: 65 DDLEFDMIGIDAALANAFRRILIAEVPTMAIEKVLIKDNTSVIQDEVFAHRLGLVPIKAD 124
Query: 618 PRLFEYKSDGDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQLKWMPNGSEYEKPXX 797
PRLF K++ D A EKNTIVF L VKCT+ G IN+ VK+DQLKW+P GS Y
Sbjct: 125 PRLFNEKTNEDVATEKNTIVFSLEVKCTRQ--GDRMINASVKSDQLKWLPGGSLYSMTDD 182
Query: 798 XXXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIIIAKLRPGQAIDLEAHAVKGQGKVHA 977
QDT+ + I P Y DI++AKLRPGQAI+LEAHAVKG GK HA
Sbjct: 183 SNKTYTSFSCR----QDTI----QNDIAPRYKDILLAKLRPGQAIELEAHAVKGIGKTHA 234
Query: 978 KWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIEDVAGKKKAKVARPRDCTL 1157
KWSPVATA YRMLPEV LLEEIE AE+LV +CP+KVFDIED+ G K+A+VA PR CTL
Sbjct: 235 KWSPVATAAYRMLPEVVLLEEIEDELAEELVQKCPMKVFDIEDIMGGKRARVAAPRSCTL 294
Query: 1158 CRECIRGDDWEKRVQLRRIKEHFIFTIESTGALPPEVLFTEAVKILEEKCERILAELS 1331
CRECIRGDDWEKRVQLRR+K+HFIFT+ESTGALPPEVLFTEAVKIL KC+RI ELS
Sbjct: 295 CRECIRGDDWEKRVQLRRVKDHFIFTVESTGALPPEVLFTEAVKILSAKCQRIYNELS 352
>ref|XP_002970586.1| hypothetical protein SELMODRAFT_231624 [Selaginella moellendorffii]
gi|300162102|gb|EFJ28716.1| hypothetical protein
SELMODRAFT_231624 [Selaginella moellendorffii]
Length = 353
Score = 474 bits (1219), Expect = e-131
Identities = 241/356 (67%), Positives = 280/356 (78%)
Frame = +3
Query: 264 LPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSEFCKNFRIEVTTLNDET 443
LP HLELQRTRV+CASDAP +TE VQYSGAY++ DNSLRL +F +NF +E+ +L ++
Sbjct: 8 LPAHLELQRTRVICASDAPSYTETVQYSGAYSSINYDNSLRLGDFRRNFHVEIKSLTEDD 67
Query: 444 VEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDEVLAHRLGLIPIKVDPR 623
+EFDM+GIDA++ANAFRRIL+AEVPTMAIEKVLI +NTSVIQDEV AHRLGL+PIK DPR
Sbjct: 68 LEFDMIGIDAALANAFRRILIAEVPTMAIEKVLIKDNTSVIQDEVFAHRLGLVPIKADPR 127
Query: 624 LFEYKSDGDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQLKWMPNGSEYEKPXXXX 803
LF K++ D A EKNTIVF L VKCT+ G IN+ VK+DQLKW+P GS Y
Sbjct: 128 LFNEKTNEDVATEKNTIVFSLEVKCTRQ--GDRMINASVKSDQLKWLPGGSLYSMTDDSN 185
Query: 804 XXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIIIAKLRPGQAIDLEAHAVKGQGKVHAKW 983
QDT+ + I P Y DI++AKLRPGQAI+LEAHAVKG GK HAKW
Sbjct: 186 KTYTSFSCR----QDTI----QNDIAPRYKDILLAKLRPGQAIELEAHAVKGIGKTHAKW 237
Query: 984 SPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIEDVAGKKKAKVARPRDCTLCR 1163
SPVATA YRMLPEV LLEEIE AE+LV +CP+KVFDIED+ G K+A+VA PR CTLCR
Sbjct: 238 SPVATAAYRMLPEVVLLEEIEDELAEELVQKCPMKVFDIEDIMGGKRARVAAPRSCTLCR 297
Query: 1164 ECIRGDDWEKRVQLRRIKEHFIFTIESTGALPPEVLFTEAVKILEEKCERILAELS 1331
ECIRGDDWEKRVQLRR+K+HFIFT+ESTGALPPEVLFTEAVKIL KC+RI ELS
Sbjct: 298 ECIRGDDWEKRVQLRRVKDHFIFTVESTGALPPEVLFTEAVKILSAKCQRIYNELS 353
>ref|XP_002522786.1| DNA-directed RNA polymerase I/III subunits, putative [Ricinus
communis] gi|223538024|gb|EEF39637.1| DNA-directed RNA
polymerase I/III subunits, putative [Ricinus communis]
Length = 374
Score = 470 bits (1209), Expect = e-130
Identities = 239/372 (64%), Positives = 284/372 (76%), Gaps = 1/372 (0%)
Frame = +3
Query: 219 KKPMAMDMDDVPKGKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSEF 398
KK D+ DVP G+LPPHL+LQRTRVVC SDAPIHT+ + YSGAYA+ GVDNSL+L F
Sbjct: 12 KKFSIWDLPDVPMGQLPPHLQLQRTRVVCKSDAPIHTDNIVYSGAYASIGVDNSLQLDCF 71
Query: 399 CKNFRIEVTTLNDETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDEV 578
NF++EV L + +EFDM+GIDA+IANAFRRIL++E+PTMAIEKVLI NNTS+IQDEV
Sbjct: 72 RDNFKVEVIQLTKDDMEFDMIGIDAAIANAFRRILISELPTMAIEKVLIANNTSLIQDEV 131
Query: 579 LAHRLGLIPIKVDPRLFEYKSDGDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQLK 758
LAHRLGLIPI DPRLFEY S D NEKNTIVFKL+ C + + +T V +++LK
Sbjct: 132 LAHRLGLIPINADPRLFEYLSANDTPNEKNTIVFKLHASCKRGEPRRT-----VYSEELK 186
Query: 759 WMPNGSEYEKPXXXXXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIIIAKLRPGQAIDL 938
W+P GS+ K QD +P +P+ P+ II+AKL PGQ I+L
Sbjct: 187 WLPGGSQLLKESEKADSKPSTYTSFTDKQDFIP----KPVSPSEDKIIVAKLGPGQEIEL 242
Query: 939 EAHAVKGQGKVHAKWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIEDVA-G 1115
EAHAVKG GK HAKWSPVATA YRMLPEV LLE+IE AE+L +CPV VFDIED+ G
Sbjct: 243 EAHAVKGLGKTHAKWSPVATAWYRMLPEVVLLEDIEDEIAEELTKKCPVNVFDIEDIGNG 302
Query: 1116 KKKAKVARPRDCTLCRECIRGDDWEKRVQLRRIKEHFIFTIESTGALPPEVLFTEAVKIL 1295
KK+A VARPR CTLCRECIRG +W+KRV LRR+K+HFIFTIESTGALPPEVLFTEAVK+L
Sbjct: 303 KKRATVARPRACTLCRECIRGGEWDKRVSLRRVKDHFIFTIESTGALPPEVLFTEAVKVL 362
Query: 1296 EEKCERILAELS 1331
E+KCER++ ELS
Sbjct: 363 EDKCERVITELS 374
>ref|NP_001242652.1| uncharacterized protein LOC100786622 [Glycine max]
gi|255637183|gb|ACU18922.1| unknown [Glycine max]
Length = 388
Score = 469 bits (1207), Expect = e-129
Identities = 247/384 (64%), Positives = 292/384 (76%), Gaps = 9/384 (2%)
Frame = +3
Query: 207 MSSKKKPMAMD----MDDVPKGKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVD 374
MS + + +D +D+VP KLPPHLEL +TRV+C +DAP+HT+ VQYSGAYA GVD
Sbjct: 11 MSEQSNELGLDFILSLDNVPS-KLPPHLELFKTRVLCNNDAPVHTDTVQYSGAYAILGVD 69
Query: 375 NSLRLSEFCKNFRIEVTTLNDETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNN 554
NS+RL FC+NF++EV L D +EFDM+GID +IANAFRRIL+AEVPTMAIE+V I NN
Sbjct: 70 NSVRLDSFCENFKVEVKRLTDSDIEFDMIGIDPAIANAFRRILIAEVPTMAIERVYIANN 129
Query: 555 TSVIQDEVLAHRLGLIPIKVDPRLFEY-KSDGDPANEKNTIVFKLNVKCTKDKDGKTWIN 731
TSV+QDEVL+HRLGLIPI+ DPRLFEY ++ GD NEKNTIVFKL+V+C + T
Sbjct: 130 TSVVQDEVLSHRLGLIPIRADPRLFEYPENAGDDKNEKNTIVFKLHVRCQVGQPRIT--- 186
Query: 732 SMVKTDQLKWMPNGSEY--EKPXXXXXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIII 905
VK+D+LKW+PNGSE E QD+LP + I TYSDII+
Sbjct: 187 --VKSDKLKWLPNGSELPCEGVKPNAGSKPKTFTSFTCSQDSLPEFSNNSIGLTYSDIIL 244
Query: 906 AKLRPGQAIDLEAHAVKGQGKVHAKWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPV 1085
AKL PGQ I+LEAHAVKG GK HAKWSPVATA YRMLPEV LLE +E AE+L +CPV
Sbjct: 245 AKLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEVVLLEAVEDELAEELKNKCPV 304
Query: 1086 KVFDIEDVA-GKKKAKVARPRDCTLCRECIR-GDDWEKRVQLRRIKEHFIFTIESTGALP 1259
VFDIED+ GK++AKVARPRDCTLCRECIR G +WE RV LRR+K HFIFTIESTGALP
Sbjct: 305 NVFDIEDIGKGKRRAKVARPRDCTLCRECIRGGKEWEDRVSLRRVKNHFIFTIESTGALP 364
Query: 1260 PEVLFTEAVKILEEKCERILAELS 1331
PEVLFTEAVKILE+KCER++ ELS
Sbjct: 365 PEVLFTEAVKILEDKCERVITELS 388
>ref|XP_003532185.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Glycine max]
Length = 393
Score = 469 bits (1206), Expect = e-129
Identities = 245/384 (63%), Positives = 292/384 (76%), Gaps = 9/384 (2%)
Frame = +3
Query: 207 MSSKKKPMAMD----MDDVPKGKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVD 374
MS + + +D +D+VP KLPPHLEL +TRV+C +DAP+HT+ VQYSGAYA GVD
Sbjct: 16 MSEQSNELGLDFILSLDNVPS-KLPPHLELFKTRVLCNNDAPVHTDTVQYSGAYAIMGVD 74
Query: 375 NSLRLSEFCKNFRIEVTTLNDETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNN 554
NS+RL FC+NF++EV L D +EFDM+GID +IANAFRRIL+AEVPTMAIE+V I NN
Sbjct: 75 NSVRLDSFCENFKVEVKRLTDSDIEFDMIGIDPAIANAFRRILIAEVPTMAIERVYIANN 134
Query: 555 TSVIQDEVLAHRLGLIPIKVDPRLFEY-KSDGDPANEKNTIVFKLNVKCTKDKDGKTWIN 731
TSV+QDEVL+HRLGLIPI+ DPRLFEY ++ GD NEKNTIVFKL+V+C + T
Sbjct: 135 TSVVQDEVLSHRLGLIPIRADPRLFEYPENAGDDKNEKNTIVFKLHVRCQVGQPRIT--- 191
Query: 732 SMVKTDQLKWMPNGSEY--EKPXXXXXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIII 905
VK+D+LKW+PNGSE E QD+LP + I TYSDII+
Sbjct: 192 --VKSDKLKWLPNGSELPCEDVKPNAGSKPKTFTSFTCSQDSLPEFSNNSIGLTYSDIIL 249
Query: 906 AKLRPGQAIDLEAHAVKGQGKVHAKWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPV 1085
AKL PGQ I+LEAHAVKG GK HAKWSPVAT YRMLPEV LL+++E AE+L +CPV
Sbjct: 250 AKLGPGQEIELEAHAVKGTGKTHAKWSPVATTWYRMLPEVVLLKDVEDELAEELKNKCPV 309
Query: 1086 KVFDIEDVA-GKKKAKVARPRDCTLCRECIR-GDDWEKRVQLRRIKEHFIFTIESTGALP 1259
VFDIED+ GK++AKVARPRDCTLCRECIR G +WE RV LRR+K HFIFTIESTGALP
Sbjct: 310 NVFDIEDIGKGKRRAKVARPRDCTLCRECIRGGKEWEDRVSLRRVKNHFIFTIESTGALP 369
Query: 1260 PEVLFTEAVKILEEKCERILAELS 1331
PEVLFTEAVKILE+KCER++ ELS
Sbjct: 370 PEVLFTEAVKILEDKCERVITELS 393
>ref|XP_004148257.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1-like
[Cucumis sativus] gi|449522768|ref|XP_004168398.1|
PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Cucumis sativus]
Length = 391
Score = 462 bits (1188), Expect = e-127
Identities = 239/369 (64%), Positives = 282/369 (76%), Gaps = 3/369 (0%)
Frame = +3
Query: 234 MDMDDVPKGKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSEFCKNFR 413
M++ DVP KLPPH+ELQRTRV C +DAPIHT+ +QYSGA+A+ G DNSLRL F NF+
Sbjct: 30 MNLPDVPM-KLPPHVELQRTRVECKADAPIHTDTIQYSGAFASMGFDNSLRLDNFRNNFK 88
Query: 414 IEVTTLNDETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDEVLAHRL 593
IEV L ++ +EFDM+GID ++ANAFRRIL++EVPTMAIEKVL NNTS++QDEVLAHRL
Sbjct: 89 IEVIDLKEDDIEFDMIGIDPALANAFRRILISEVPTMAIEKVLFANNTSIVQDEVLAHRL 148
Query: 594 GLIPIKVDPRLFEYKSDGDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQLKWMPNG 773
GL+PI+VDPRLF+Y SD D NE NTIVF+L+ C + K T V + L W+PNG
Sbjct: 149 GLVPIRVDPRLFKY-SDKDAPNENNTIVFRLHACCERGKPRLT-----VTSKALTWLPNG 202
Query: 774 SEYE--KPXXXXXXXXXXXXXXXXXQDTLPV-IAEEPIRPTYSDIIIAKLRPGQAIDLEA 944
SE+ Q+TL + PI P SDII+A+L PGQ I+LEA
Sbjct: 203 SEFPLVSDKSVSNSKPKTYTSFSCSQNTLSKEFSNNPIGPKDSDIILARLGPGQEIELEA 262
Query: 945 HAVKGQGKVHAKWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIEDVAGKKK 1124
HAVKG GK HAKWSPVATA YRMLPEV L+EEIE AE+L +CPV VFDIED+AGKK+
Sbjct: 263 HAVKGMGKTHAKWSPVATAWYRMLPEVVLMEEIEDELAEELEKKCPVNVFDIEDIAGKKR 322
Query: 1125 AKVARPRDCTLCRECIRGDDWEKRVQLRRIKEHFIFTIESTGALPPEVLFTEAVKILEEK 1304
A VARPRDCTLCRECIRGD WEKRV LRR+K+HFIF IESTGALPPEVLFTEAVKILE+K
Sbjct: 323 ATVARPRDCTLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPEVLFTEAVKILEDK 382
Query: 1305 CERILAELS 1331
CER++AELS
Sbjct: 383 CERLIAELS 391
>gb|EPS59249.1| hypothetical protein M569_15560, partial [Genlisea aurea]
Length = 364
Score = 459 bits (1180), Expect = e-126
Identities = 228/367 (62%), Positives = 281/367 (76%), Gaps = 5/367 (1%)
Frame = +3
Query: 237 DMDDVPKGKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSEFCKNFRI 416
D+ DVP G+LPPHL+LQRTRV+C S+AP +TE +QYSGAYA GVDNSL F +NFR+
Sbjct: 3 DLPDVPGGELPPHLQLQRTRVLCTSEAPTYTENIQYSGAYALMGVDNSLPFDSFRENFRV 62
Query: 417 EVTTLNDETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDEVLAHRLG 596
E+ ++++ +EFD++GIDA+IANAFRRIL+AE+PTMAIEKVLI NNTSVI DEVL+HRLG
Sbjct: 63 EIVSMDEHDIEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIPDEVLSHRLG 122
Query: 597 LIPIKVDPRLFEYKSDGDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQLKWMPNGS 776
LIP+KVDPR F + S+ D NEKNT+VFKL+V C + KT VKTD+LKW+PNGS
Sbjct: 123 LIPLKVDPRPFSFMSEHDEPNEKNTVVFKLHVSCERKGSRKT-----VKTDELKWLPNGS 177
Query: 777 EY----EKPXXXXXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIIIAKLRPGQAIDLEA 944
E E+P QD++P + +RPT +I IA+L PGQ I+LEA
Sbjct: 178 ELRLETERPNINSTSKIQTYTSFNCSQDSMPEFSGSTLRPTSDEITIARLGPGQEIELEA 237
Query: 945 HAVKGQGKVHAKWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIEDVAGKK- 1121
HAVKG GK HAKWSPVATA YR+LPE+ALL+EI+ A++LV +CP KVFDIED G
Sbjct: 238 HAVKGMGKTHAKWSPVATAWYRLLPEIALLDEIKNKKAKELVKKCPQKVFDIEDAGGDGI 297
Query: 1122 KAKVARPRDCTLCRECIRGDDWEKRVQLRRIKEHFIFTIESTGALPPEVLFTEAVKILEE 1301
+A VARPR+C+LCRECIR ++WEK V +RR+K+HFIF IESTGALPPEVLFTEAVKILEE
Sbjct: 298 RATVARPRNCSLCRECIRDEEWEKLVSVRRVKDHFIFKIESTGALPPEVLFTEAVKILEE 357
Query: 1302 KCERILA 1322
KCE +A
Sbjct: 358 KCENAMA 364
>ref|XP_002888129.1| ATRPAC43 [Arabidopsis lyrata subsp. lyrata]
gi|297333970|gb|EFH64388.1| ATRPAC43 [Arabidopsis lyrata
subsp. lyrata]
Length = 385
Score = 457 bits (1176), Expect = e-126
Identities = 235/367 (64%), Positives = 278/367 (75%), Gaps = 2/367 (0%)
Frame = +3
Query: 237 DMDDVPKGKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSEFCKNFRI 416
D+ DVP G LPPHLELQRTR VC +DAPIH V YSGAYA+ GVDNS+RL F ++F++
Sbjct: 25 DLPDVPTG-LPPHLELQRTRAVCKNDAPIHPTSVLYSGAYASMGVDNSVRLENFSEDFKV 83
Query: 417 EVTTLNDETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDEVLAHRLG 596
+V +L + + FDM+G+ A IANAFRRILLAE+P+MAIEKV + NNTSVIQDEVLAHRLG
Sbjct: 84 DVISLTETYMVFDMIGVPAGIANAFRRILLAELPSMAIEKVFVANNTSVIQDEVLAHRLG 143
Query: 597 LIPIKVDPRLFEYKSDGDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQLKWMPNGS 776
LIPI DPRLFEY S+ D NEKNTIVFKL+VKC K + V T +LKW+PNGS
Sbjct: 144 LIPIAADPRLFEYLSENDQPNEKNTIVFKLHVKCPKGDPRR-----KVLTSELKWLPNGS 198
Query: 777 EYEKPXXXXXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIIIAKLRPGQAIDLEAHAVK 956
E K QD+ P A+ PI P++ DI+IAKL PGQ I+LEAHAVK
Sbjct: 199 ELVKESGGLTTKPKTYTSFSHSQDSFPGFAKNPITPSFQDILIAKLGPGQEIELEAHAVK 258
Query: 957 GQGKVHAKWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIEDVA-GKKKAKV 1133
G GK HAKWSPVATA YRMLPEV LL+E EG AE+LV CP KVFDIED+ G+K+A V
Sbjct: 259 GIGKTHAKWSPVATAWYRMLPEVILLKEFEGKHAEELVKVCPKKVFDIEDMGQGRKRATV 318
Query: 1134 ARPRDCTLCRECIR-GDDWEKRVQLRRIKEHFIFTIESTGALPPEVLFTEAVKILEEKCE 1310
ARPRDC+LCRECIR G +W K+V LRR+K HFIFTIESTG+ PP+VLF EAVKILE+KCE
Sbjct: 319 ARPRDCSLCRECIREGVEWAKQVDLRRVKNHFIFTIESTGSQPPDVLFNEAVKILEDKCE 378
Query: 1311 RILAELS 1331
R+++ELS
Sbjct: 379 RVISELS 385
>ref|NP_176261.1| RNA polymerase I subunit 43 [Arabidopsis thaliana]
gi|14423464|gb|AAK62414.1|AF386969_1 RNA polymerase
subunit (isoform B) [Arabidopsis thaliana]
gi|514324|gb|AAB00529.1| RNA polymerase subunit
[Arabidopsis thaliana] gi|2462755|gb|AAB71974.1| RNA
polymerase subunit (isoform B) [Arabidopsis thaliana]
gi|24899667|gb|AAN65048.1| RNA polymerase subunit
(isoform B) [Arabidopsis thaliana]
gi|332195585|gb|AEE33706.1| RNA polymerase I subunit 43
[Arabidopsis thaliana] gi|1586550|prf||2204246B RNA
polymerase
Length = 385
Score = 456 bits (1174), Expect = e-125
Identities = 235/367 (64%), Positives = 277/367 (75%), Gaps = 2/367 (0%)
Frame = +3
Query: 237 DMDDVPKGKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSEFCKNFRI 416
D+ DVP G LPPHLELQRTRVVC D+ IH + +SGAY++ GVDNS+RL F ++F++
Sbjct: 25 DLPDVPTG-LPPHLELQRTRVVCKKDSNIHPTAITFSGAYSSMGVDNSVRLENFSEDFKV 83
Query: 417 EVTTLNDETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDEVLAHRLG 596
+V +L + + FDM+G+ A IANAFRRILLAE+P+MAIEKV + NNTSVIQDEVLAHRLG
Sbjct: 84 DVISLTETDMVFDMIGVHAGIANAFRRILLAELPSMAIEKVYVANNTSVIQDEVLAHRLG 143
Query: 597 LIPIKVDPRLFEYKSDGDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQLKWMPNGS 776
LIPI DPRLFEY S+ D NEKNTIVFKL+VKC K + V T +LKW+PNGS
Sbjct: 144 LIPIAADPRLFEYLSENDQPNEKNTIVFKLHVKCLKGDPRR-----KVLTSELKWLPNGS 198
Query: 777 EYEKPXXXXXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIIIAKLRPGQAIDLEAHAVK 956
E K QD+ P AE PIRPT DI+IAKL PGQ I+LEAHAVK
Sbjct: 199 ELIKESGGSTTTPKTYTSFNHSQDSFPEFAENPIRPTLKDILIAKLGPGQEIELEAHAVK 258
Query: 957 GQGKVHAKWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIEDVA-GKKKAKV 1133
G GK HAKWSPVATA YRMLPEV LL+E EG AE+LV CP KVFDIED+ G+K+A V
Sbjct: 259 GIGKTHAKWSPVATAWYRMLPEVVLLKEFEGKHAEELVKVCPKKVFDIEDMGQGRKRATV 318
Query: 1134 ARPRDCTLCRECIR-GDDWEKRVQLRRIKEHFIFTIESTGALPPEVLFTEAVKILEEKCE 1310
ARPRDC+LCRECIR G +WE +V LRR+K HFIFTIESTG+ PPEVLF EAVKILE+KCE
Sbjct: 319 ARPRDCSLCRECIRDGVEWEDQVDLRRVKNHFIFTIESTGSQPPEVLFNEAVKILEDKCE 378
Query: 1311 RILAELS 1331
R+++ELS
Sbjct: 379 RVISELS 385
>ref|XP_004488284.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1-like
[Cicer arietinum]
Length = 388
Score = 456 bits (1173), Expect = e-125
Identities = 230/371 (61%), Positives = 285/371 (76%), Gaps = 5/371 (1%)
Frame = +3
Query: 234 MDMDDVPKGKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSEFCKNFR 413
M+++DVP KL PHLEL +TRVVC+ DAP HT+ + YSGAYAA GVDNS+RL FC+NF+
Sbjct: 24 MNLEDVPS-KLSPHLELIKTRVVCSIDAPQHTDTINYSGAYAALGVDNSVRLDSFCRNFK 82
Query: 414 IEVTTLNDETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDEVLAHRL 593
+EV L D+ +EFDM+GID S+ANAFRRIL+AEVPTMAIE+V I NNTS+IQDEVL+HRL
Sbjct: 83 VEVKKLTDDDIEFDMIGIDPSLANAFRRILIAEVPTMAIERVYIANNTSIIQDEVLSHRL 142
Query: 594 GLIPIKVDPRLFEYKSD-GDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQLKWMPN 770
GLIPI DP LFEY + G NEKNTIVFKL+V+C K + +VK+D+LKW+PN
Sbjct: 143 GLIPINADPTLFEYPDNAGGENNEKNTIVFKLHVRCEKGQP-----RIIVKSDELKWLPN 197
Query: 771 GSEY--EKPXXXXXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIIIAKLRPGQAIDLEA 944
GS+ + QD+LP ++ P+ PTY DII+AKL PGQ I+LE
Sbjct: 198 GSDLIADDTKPNAGSKPKTFTSFSCSQDSLPEFSKRPLGPTYPDIILAKLGPGQEIELEV 257
Query: 945 HAVKGQGKVHAKWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIEDVA-GKK 1121
HAVKG GK HAKWSPVATA YRMLPEV L+E+++ A++LV +CPV VFDIED+ G+K
Sbjct: 258 HAVKGVGKTHAKWSPVATAWYRMLPEVVLMEDVKDELADELVTKCPVNVFDIEDIGKGRK 317
Query: 1122 KAKVARPRDCTLCRECIR-GDDWEKRVQLRRIKEHFIFTIESTGALPPEVLFTEAVKILE 1298
+A V +PR CTLCRECIR G +WE RV LRR+K+HFIFTIESTGA+PP+VLFT+AVKILE
Sbjct: 318 RATVVKPRACTLCRECIRGGKEWEDRVSLRRVKDHFIFTIESTGAIPPDVLFTQAVKILE 377
Query: 1299 EKCERILAELS 1331
+KCER++ ELS
Sbjct: 378 DKCERVITELS 388
>ref|XP_002300385.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
gi|222847643|gb|EEE85190.1| DNA-directed RNA polymerase
family protein [Populus trichocarpa]
Length = 390
Score = 452 bits (1164), Expect = e-124
Identities = 235/367 (64%), Positives = 274/367 (74%), Gaps = 2/367 (0%)
Frame = +3
Query: 237 DMDDVPKGKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSEFCKNFRI 416
++ DV +G+LPPH+ Q TRV C DAP +TE +QYSG+YA+ GVDNSLRL F +NFRI
Sbjct: 30 NLKDVERGQLPPHIRKQGTRVYCKPDAPTNTETLQYSGSYASMGVDNSLRLDSFRENFRI 89
Query: 417 EVTTLNDETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDEVLAHRLG 596
+V L+ + +EFDM+GIDA++ANAFRRIL++EVPTMAIEKV I NNTSVIQDEVLAHRLG
Sbjct: 90 KVIALDKDKMEFDMIGIDAAVANAFRRILISEVPTMAIEKVFIANNTSVIQDEVLAHRLG 149
Query: 597 LIPIKVDPRLFEYKSDGDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQLKWMPNGS 776
LIPIKVDPRLFEY S D NEKNTIV KL+ +C + + V + +LKW+PNGS
Sbjct: 150 LIPIKVDPRLFEYLSANDTPNEKNTIVLKLHARCNRGQP-----RCSVYSQELKWLPNGS 204
Query: 777 EYEKPXXXXXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIIIAKLRPGQAIDLEAHAVK 956
E+ K QD+LP A PI T DII+AKL PGQ I+LEAHAVK
Sbjct: 205 EFAKESEKPDSKPSTYTSFSCGQDSLPEFAGNPI-STVEDIILAKLGPGQEIELEAHAVK 263
Query: 957 GQGKVHAKWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIEDVA-GKKKAKV 1133
G GK HAKWSPV TA YRM PEV LLE I+G DAE+L+ +CP VFDIED KKKA V
Sbjct: 264 GMGKTHAKWSPVGTAWYRMFPEVVLLENIKGEDAEELIRKCPSGVFDIEDTGNAKKKAIV 323
Query: 1134 ARPRDCTLCRECIRGD-DWEKRVQLRRIKEHFIFTIESTGALPPEVLFTEAVKILEEKCE 1310
A R CTLCRECIRGD +WEKRV L R+K+HFIFTIESTGALPPEVLFTEAVKILE KCE
Sbjct: 324 ADSRACTLCRECIRGDEEWEKRVALHRVKDHFIFTIESTGALPPEVLFTEAVKILEAKCE 383
Query: 1311 RILAELS 1331
R++ ELS
Sbjct: 384 RVITELS 390
>ref|XP_004498147.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1-like
[Cicer arietinum]
Length = 388
Score = 452 bits (1163), Expect = e-124
Identities = 231/371 (62%), Positives = 283/371 (76%), Gaps = 5/371 (1%)
Frame = +3
Query: 234 MDMDDVPKGKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSEFCKNFR 413
M+++DVP KL PHLEL +TRVVC+ DAP HT+ + YSGAYAA GVDNS+RL FC+NF+
Sbjct: 24 MNLEDVPS-KLSPHLELIKTRVVCSIDAPQHTDTINYSGAYAALGVDNSVRLDSFCQNFK 82
Query: 414 IEVTTLNDETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDEVLAHRL 593
+EV L D+ +EFDM+GID S+ANAFRRIL+AEVPTMAIE+V I NNTS+IQDEVL+HRL
Sbjct: 83 VEVKKLTDDDIEFDMIGIDPSLANAFRRILIAEVPTMAIERVYIANNTSIIQDEVLSHRL 142
Query: 594 GLIPIKVDPRLFEYKSD-GDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQLKWMPN 770
GLIPI DP LFEY + G NEKNTIVFKL+V+C K + T VK+D+LKW+PN
Sbjct: 143 GLIPINADPTLFEYPDNAGGENNEKNTIVFKLHVRCEKGQPRIT-----VKSDELKWLPN 197
Query: 771 GSEY--EKPXXXXXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIIIAKLRPGQAIDLEA 944
GS+ + QD+LP +++P+ PT DII+AKL PGQ I+LE
Sbjct: 198 GSDLIADDTKPNAGSKPKTFTSFSCSQDSLPEFSKKPLGPTNPDIILAKLGPGQEIELEV 257
Query: 945 HAVKGQGKVHAKWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIEDVA-GKK 1121
HAVKG GK HAKWSPVATA YRMLPEV L E++ A++LV +CPV VFDIED+ G+K
Sbjct: 258 HAVKGVGKTHAKWSPVATAWYRMLPEVVLTEDVTDELADELVTKCPVNVFDIEDIGKGRK 317
Query: 1122 KAKVARPRDCTLCRECIR-GDDWEKRVQLRRIKEHFIFTIESTGALPPEVLFTEAVKILE 1298
+A V +PR CTLCRECIR G +WE RV LRR+K+HFIFTIESTGA+PPEVLFT+AVKILE
Sbjct: 318 RATVVKPRACTLCRECIRGGKEWEDRVSLRRVKDHFIFTIESTGAIPPEVLFTQAVKILE 377
Query: 1299 EKCERILAELS 1331
+KCER++ ELS
Sbjct: 378 DKCERVITELS 388
>ref|XP_006414263.1| hypothetical protein EUTSA_v10025407mg [Eutrema salsugineum]
gi|557115433|gb|ESQ55716.1| hypothetical protein
EUTSA_v10025407mg [Eutrema salsugineum]
Length = 394
Score = 444 bits (1143), Expect = e-122
Identities = 236/384 (61%), Positives = 274/384 (71%), Gaps = 19/384 (4%)
Frame = +3
Query: 237 DMDDVPKGKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSEFCKNFRI 416
D DVP +LPPHLELQRTRV+C +DAPIHT VQYSGAY GVDNS++L F +NFR+
Sbjct: 17 DHPDVP-ARLPPHLELQRTRVLCKNDAPIHTSSVQYSGAYKFVGVDNSVKLESFSENFRV 75
Query: 417 EVTTLNDETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDEVLAHRLG 596
+V + + +EFDM+GIDA+IANAFRRILLAE+PTMAIEKV + NNTSV+QDEVLA R+G
Sbjct: 76 DVISEDGMELEFDMIGIDAAIANAFRRILLAELPTMAIEKVFVANNTSVVQDEVLAQRMG 135
Query: 597 LIPIKVDPRLFEYKSDGDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQLKWMPNGS 776
LIPI DPRLFEY S+ D NEKNTIVFKL+ KC K + V T +L W+PNGS
Sbjct: 136 LIPIAADPRLFEYLSENDQPNEKNTIVFKLHAKCEKGEP-----RLKVLTKELIWLPNGS 190
Query: 777 EYEKPXXXXXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIIIAKLRPGQAIDLEAHAVK 956
E K QD+ P A PI P+Y DI+IAKL PGQ I+LEAHAVK
Sbjct: 191 ELIKESGGSTSKPRTYTSFSRSQDSFPEFANNPITPSYPDILIAKLGPGQEIELEAHAVK 250
Query: 957 GQGKVHAKWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIEDVA-GKKKAKV 1133
G GK HAKWSPVATA YRMLPEV LL+E EG DAEKLV C KVFDIED+ G+KKA V
Sbjct: 251 GIGKTHAKWSPVATAWYRMLPEVILLKEFEGEDAEKLVKACAEKVFDIEDMGNGRKKATV 310
Query: 1134 ARPRDCTLCREC-------------IRGDD-----WEKRVQLRRIKEHFIFTIESTGALP 1259
ARPR CTLCREC ++G+D W V LRR+K HFIF IESTG+LP
Sbjct: 311 ARPRQCTLCRECLSEEFGEPIVKPILKGEDKSKREWVDNVALRRVKNHFIFKIESTGSLP 370
Query: 1260 PEVLFTEAVKILEEKCERILAELS 1331
P+VLFTEAVKILE+KCER++A LS
Sbjct: 371 PDVLFTEAVKILEDKCERVIAVLS 394