BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00006088
         (1591 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006850181.1| hypothetical protein AMTR_s00022p00245030 [A...   699   0.0  
emb|CBI29879.3| unnamed protein product [Vitis vinifera]              619   e-175
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...   619   e-175
ref|XP_002963596.1| hypothetical protein SELMODRAFT_438401 [Sela...   609   e-172
emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera]   608   e-171
ref|XP_002981487.1| hypothetical protein SELMODRAFT_233747 [Sela...   603   e-170
ref|XP_004967186.1| PREDICTED: DNA-directed RNA polymerase I sub...   597   e-168
ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Caps...   597   e-168
ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arab...   590   e-166
ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I sub...   590   e-166
dbj|BAD35511.1| putative RNA polymerase A(I) large subunit [Oryz...   590   e-166
gb|EEE66008.1| hypothetical protein OsJ_21959 [Oryza sativa Japo...   590   e-166
ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I sub...   585   e-164
gb|ACN85301.1| putative RNA polymerase A(I) large subunit [Oryza...   585   e-164
ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I sub...   584   e-164
gb|EMJ04262.1| hypothetical protein PRUPE_ppa000153mg [Prunus pe...   584   e-164
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...   584   e-164
ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana...   583   e-164
gb|EOY09358.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma ca...   583   e-164
gb|EOY09357.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma ca...   583   e-164

>ref|XP_006850181.1| hypothetical protein AMTR_s00022p00245030 [Amborella trichopoda]
            gi|548853779|gb|ERN11762.1| hypothetical protein
            AMTR_s00022p00245030 [Amborella trichopoda]
          Length = 1600

 Score =  699 bits (1803), Expect = 0.0
 Identities = 344/535 (64%), Positives = 427/535 (79%), Gaps = 7/535 (1%)
 Frame = +1

Query: 7    LRLLWENETRICCLMWDIQQEKKNSWKQAPSYEMFFLQVLLVPPSRFRPPNKVGTSVLEH 186
            L+LLWENE RIC LMWDIQQ+K  + +Q+P+Y MFF++VLLVPP RFRPPN    S LEH
Sbjct: 229  LKLLWENEPRICSLMWDIQQKKLLACRQSPTYLMFFIKVLLVPPCRFRPPNTKNDSELEH 288

Query: 187  PQNILYSKVLQANIAVVEALKSGKNQGYVFQVTNRWLNLQDAVNVVIDSNTANTMKGKDV 366
             Q  L  +VL+AN+++ +A+K+G       ++ + W +LQ  V+++ DS+ A+  KG+  
Sbjct: 289  TQTTLLRRVLEANLSLGDAIKAGDVVDS--KINDSWRDLQTNVDLLFDSDKASGKKGELE 346

Query: 367  TGVRQLLEKKEGLFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTP 546
            +G+RQLLEKKEGLFRQNMMGKRVN+ACRSVISPDP+LAVNEIGIPPYFA +LTYPEKVTP
Sbjct: 347  SGIRQLLEKKEGLFRQNMMGKRVNFACRSVISPDPFLAVNEIGIPPYFAKKLTYPEKVTP 406

Query: 547  WNEEKLRQAIRNGPHVYPGATHFEDEQGMVDLSKIL-------PHQRNSIAKKLLSTRGV 705
            WN E+LRQA+ NGP ++PGAT + DEQG  +L+  L        ++RNSIAKKLLST G 
Sbjct: 407  WNAERLRQAVLNGPEIHPGATLYHDEQGNTNLADNLNDSKYKNENRRNSIAKKLLSTPGA 466

Query: 706  ASSGTSVENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSMMAHIARVLKGEKTLRMH 885
             S+  S +  +SN  EGKVVYRH+QDGD++LVNRQPTLHKPSMMAH+AR+LKGEKTLRMH
Sbjct: 467  VSTDVSGKGFNSN-FEGKVVYRHIQDGDIVLVNRQPTLHKPSMMAHVARILKGEKTLRMH 525

Query: 886  YANCSAYNADFDGDEMNVHFPQDEISRAEAYSIVNANKQYTVPTSGDPIRGLIQDHIVSA 1065
            YANCS+YNADFDGDEMNVHFPQDEI+RAEAY+IVNAN+QY VPTSG+PIRGLIQDHIVSA
Sbjct: 526  YANCSSYNADFDGDEMNVHFPQDEIARAEAYNIVNANEQYIVPTSGEPIRGLIQDHIVSA 585

Query: 1066 TLLTKRDTFLSKEEYQNLVYSACIXXXXXXXXXXXXQPKVAICKEDGLFVSLPPAVWKPV 1245
             LLTK+DTFL++EEY +L+YSAC+              K+++ K D     L PA+WKP 
Sbjct: 586  VLLTKKDTFLTQEEYHHLLYSACVSTVAPDFKHGNLSKKISLVKSDEEIRPLLPAIWKPK 645

Query: 1246 PLWTGKQVITTILDYITRGSLPFSMKKLGRVPAIYWGRESWELEVVIQNNELVCGVIDKA 1425
            PLWTGKQVI+TILD++TRG  PF++K+ GR+PA Y+G+++ E +V++  NELV GVIDKA
Sbjct: 646  PLWTGKQVISTILDHVTRGQPPFTVKRAGRIPAGYFGKKNGEYKVLVHKNELVHGVIDKA 705

Query: 1426 QFGKYGLVHVVHELYGADAAGRLLSVFSRLFTCFMQMHGFTCGAVDLLLFPHAEI 1590
            QFGK+GLVH VHELYGA AAGRL SVF+RLFT ++QMHGFTCG  DLL+   AE+
Sbjct: 706  QFGKFGLVHAVHELYGASAAGRLFSVFTRLFTAYLQMHGFTCGVDDLLVRQCAEM 760


>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score =  619 bits (1597), Expect = e-175
 Identities = 322/557 (57%), Positives = 398/557 (71%), Gaps = 27/557 (4%)
 Frame = +1

Query: 1    DHLRLLWENETRICCLMWDIQQEKKNSWKQAPSYEMFFLQVLLVPPSRFRPPNKVGTSVL 180
            D +  LWENE  +C  + DI QE+  +      Y MFFL+ +LVPP +FRPP+K   SV+
Sbjct: 300  DIMERLWENEAELCSFISDILQERLGASGNKAGYSMFFLETILVPPIKFRPPSKGQISVM 359

Query: 181  EHPQNILYSKVLQANIAVVEALKSGKNQGYVFQVTNRWLNLQDAVNVVIDSNTANTMKGK 360
            EHPQ +L  KVLQANIA+  A  +   +    ++ +RW++LQ ++NV+ D  TA     +
Sbjct: 360  EHPQTVLLGKVLQANIALGNAHANNSERS---KIISRWMDLQQSINVLFDGKTAAGQGQR 416

Query: 361  DV-TGVRQLLEKKEGLFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPEK 537
            D  +G+ QLLEKKEG+FRQ MMGKRVN+ACRSVISPDPYLAVNEIGIPPYFALRLTYPEK
Sbjct: 417  DTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEK 476

Query: 538  VTPWNEEKLRQAIRNGPHVYPGATHFEDEQGMVDLSKILPHQRNSIAKKLLSTRGV-ASS 714
            VTPWN  KLR AI NGP ++PGATH+ D+   V L+ +    R SI++KL S+RGV A  
Sbjct: 477  VTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLA-VNKKMRISISRKLPSSRGVVAQP 535

Query: 715  GTSVENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSMMAHIARVLKGEKTLRMHYAN 894
            G S +N    + EGK+VYRHLQDGD++LVNRQPTLHKPS+MAH+ RVLKGEKTLRMHYAN
Sbjct: 536  GRSSDN----EFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYAN 591

Query: 895  CSAYNADFDGDEMNVHFPQDEISRAEAYSIVNANKQYTVPTSGDPIRGLIQDHIVSATLL 1074
            CS YNADFDGDEMNVHFPQDEISRAEAY+IVNAN QY VP+ GDPIRGLIQDHIVSA LL
Sbjct: 592  CSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGLIQDHIVSAVLL 651

Query: 1075 TKRDTFLSKEEYQNLVYSACIXXXXXXXXXXXXQPKVAICKEDGLFVSLPPAVWKPVPLW 1254
            TK+DTFL++E+Y  L+YS+ +            + KV++   +     L PA+WKP PLW
Sbjct: 652  TKKDTFLTREQYNQLLYSSGLSSGSGSFIGKPGK-KVSVLDSEDEMQPLLPAIWKPEPLW 710

Query: 1255 TGKQVITTILDYITRGSLPFSMKKLGRVPAIYWGRE------------------------ 1362
            +GKQVIT +L++ITRG  PF+ +K G++P  Y+G E                        
Sbjct: 711  SGKQVITAVLNHITRGRKPFTTEKDGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEK 770

Query: 1363 -SWELEVVIQNNELVCGVIDKAQFGKYGLVHVVHELYGADAAGRLLSVFSRLFTCFMQMH 1539
               E +++I  NELV GVIDKAQF KYGLVH+V ELYG++ AG LLSV SRLFT F+QMH
Sbjct: 771  KHGEYKLLIHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMH 830

Query: 1540 GFTCGAVDLLLFPHAEI 1590
            GFTCG  DLL+ P+ +I
Sbjct: 831  GFTCGVDDLLISPNYDI 847


>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
            vinifera]
          Length = 1740

 Score =  619 bits (1597), Expect = e-175
 Identities = 322/557 (57%), Positives = 398/557 (71%), Gaps = 27/557 (4%)
 Frame = +1

Query: 1    DHLRLLWENETRICCLMWDIQQEKKNSWKQAPSYEMFFLQVLLVPPSRFRPPNKVGTSVL 180
            D +  LWENE  +C  + DI QE+  +      Y MFFL+ +LVPP +FRPP+K   SV+
Sbjct: 371  DIMERLWENEAELCSFISDILQERLGASGNKAGYSMFFLETILVPPIKFRPPSKGQISVM 430

Query: 181  EHPQNILYSKVLQANIAVVEALKSGKNQGYVFQVTNRWLNLQDAVNVVIDSNTANTMKGK 360
            EHPQ +L  KVLQANIA+  A  +   +    ++ +RW++LQ ++NV+ D  TA     +
Sbjct: 431  EHPQTVLLGKVLQANIALGNAHANNSERS---KIISRWMDLQQSINVLFDGKTAAGQGQR 487

Query: 361  DV-TGVRQLLEKKEGLFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPEK 537
            D  +G+ QLLEKKEG+FRQ MMGKRVN+ACRSVISPDPYLAVNEIGIPPYFALRLTYPEK
Sbjct: 488  DTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEK 547

Query: 538  VTPWNEEKLRQAIRNGPHVYPGATHFEDEQGMVDLSKILPHQRNSIAKKLLSTRGV-ASS 714
            VTPWN  KLR AI NGP ++PGATH+ D+   V L+ +    R SI++KL S+RGV A  
Sbjct: 548  VTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLA-VNKKMRISISRKLPSSRGVVAQP 606

Query: 715  GTSVENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSMMAHIARVLKGEKTLRMHYAN 894
            G S +N    + EGK+VYRHLQDGD++LVNRQPTLHKPS+MAH+ RVLKGEKTLRMHYAN
Sbjct: 607  GRSSDN----EFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYAN 662

Query: 895  CSAYNADFDGDEMNVHFPQDEISRAEAYSIVNANKQYTVPTSGDPIRGLIQDHIVSATLL 1074
            CS YNADFDGDEMNVHFPQDEISRAEAY+IVNAN QY VP+ GDPIRGLIQDHIVSA LL
Sbjct: 663  CSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGLIQDHIVSAVLL 722

Query: 1075 TKRDTFLSKEEYQNLVYSACIXXXXXXXXXXXXQPKVAICKEDGLFVSLPPAVWKPVPLW 1254
            TK+DTFL++E+Y  L+YS+ +            + KV++   +     L PA+WKP PLW
Sbjct: 723  TKKDTFLTREQYNQLLYSSGLSSGSGSFIGKPGK-KVSVLDSEDEMQPLLPAIWKPEPLW 781

Query: 1255 TGKQVITTILDYITRGSLPFSMKKLGRVPAIYWGRE------------------------ 1362
            +GKQVIT +L++ITRG  PF+ +K G++P  Y+G E                        
Sbjct: 782  SGKQVITAVLNHITRGRKPFTTEKDGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEK 841

Query: 1363 -SWELEVVIQNNELVCGVIDKAQFGKYGLVHVVHELYGADAAGRLLSVFSRLFTCFMQMH 1539
               E +++I  NELV GVIDKAQF KYGLVH+V ELYG++ AG LLSV SRLFT F+QMH
Sbjct: 842  KHGEYKLLIHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMH 901

Query: 1540 GFTCGAVDLLLFPHAEI 1590
            GFTCG  DLL+ P+ +I
Sbjct: 902  GFTCGVDDLLISPNYDI 918


>ref|XP_002963596.1| hypothetical protein SELMODRAFT_438401 [Selaginella moellendorffii]
            gi|300168864|gb|EFJ35467.1| hypothetical protein
            SELMODRAFT_438401 [Selaginella moellendorffii]
          Length = 1588

 Score =  609 bits (1571), Expect = e-172
 Identities = 313/531 (58%), Positives = 387/531 (72%), Gaps = 3/531 (0%)
 Frame = +1

Query: 4    HLRLLWENETRICCLMWDIQQEKKNSWKQAPSYEMFFLQVLLVPPSRFRPPNKVGTSVLE 183
            HL  LW NE ++C L+W      K+  ++     +FFL+ L V P+RFRPPN V   +LE
Sbjct: 289  HLSALWRNEEKLCSLIWGGVGTGKSPARK-DGLSLFFLEALAVTPNRFRPPNYVNNQLLE 347

Query: 184  HPQNILYSKVLQANIAVVEAL-KSGKNQGYVFQVTNRWLNLQDAVNVVIDSNTANTMKGK 360
            HPQN LY  V++ NI + + + +SG       ++   WL LQ+AVN +IDS T   + GK
Sbjct: 348  HPQNKLYEVVVEKNIQLSDLITESGAKSEDGLRL---WLELQNAVNELIDSTT---VAGK 401

Query: 361  DVT-GVRQLLEKKEGLFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPEK 537
            D   G+RQLLEKK+GLFR NMMGKRVN+ CRSVISPDP++AVNEIGIPP FA++LTYPEK
Sbjct: 402  DRNVGIRQLLEKKQGLFRWNMMGKRVNHTCRSVISPDPFIAVNEIGIPPNFAVKLTYPEK 461

Query: 538  VTPWNEEKLRQAIRNGPHVYPGATHFEDEQGM-VDLSKILPHQRNSIAKKLLSTRGVASS 714
            VT +N E+LR+ + NGP+V+PGATH EDE G+ V L  +   QR + AK LLST G    
Sbjct: 462  VTAYNFERLRRNVENGPNVHPGATHVEDELGVRVSLEYLKDWQRVATAKTLLSTPGA--- 518

Query: 715  GTSVENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSMMAHIARVLKGEKTLRMHYAN 894
             T+ + I   K+ GK VYRHLQDGD+LL NRQPTLHKP +M H ARV+KG++ LR+HYAN
Sbjct: 519  -TATDTIKKEKLIGKTVYRHLQDGDILLANRQPTLHKPGVMGHKARVIKGQRALRLHYAN 577

Query: 895  CSAYNADFDGDEMNVHFPQDEISRAEAYSIVNANKQYTVPTSGDPIRGLIQDHIVSATLL 1074
            CS YNADFDGDEMNVHFPQDE+ RAEAY IVNAN+QY VPTSG+PIRGLIQDHI+SATLL
Sbjct: 578  CSTYNADFDGDEMNVHFPQDELGRAEAYLIVNANQQYVVPTSGEPIRGLIQDHIISATLL 637

Query: 1075 TKRDTFLSKEEYQNLVYSACIXXXXXXXXXXXXQPKVAICKEDGLFVSLPPAVWKPVPLW 1254
            TK+DTFL+KEEY  LVYSAC+               V          ++PPA+WKP  LW
Sbjct: 638  TKKDTFLTKEEYHQLVYSACVPMPTLESGSFSKGRNVKTLDNHPAIETVPPAIWKPRCLW 697

Query: 1255 TGKQVITTILDYITRGSLPFSMKKLGRVPAIYWGRESWELEVVIQNNELVCGVIDKAQFG 1434
            +GKQV+TTIL+Y+TRG  PFSM++  RV   Y G+ S EL+V+++ N+L+CG+IDKAQFG
Sbjct: 698  SGKQVLTTILNYVTRGRPPFSMERGIRVSGDYIGKTSEELKVLVRGNDLLCGIIDKAQFG 757

Query: 1435 KYGLVHVVHELYGADAAGRLLSVFSRLFTCFMQMHGFTCGAVDLLLFPHAE 1587
            K+GLVH V ELYGAD AG LLSVFSRLFT ++ MHGFTCG  D+LL P AE
Sbjct: 758  KFGLVHTVQELYGADDAGHLLSVFSRLFTSYLFMHGFTCGIADMLLLPGAE 808


>emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera]
          Length = 1350

 Score =  608 bits (1568), Expect = e-171
 Identities = 322/575 (56%), Positives = 397/575 (69%), Gaps = 45/575 (7%)
 Frame = +1

Query: 1    DHLRLLWENETRICCLMWDIQQEKKNSWKQAPSYEMFFLQVLLVPPSRFRPPNKVGTSVL 180
            D +  LWENE  +C  + DI QE+  +      Y MFFL+ +LVPP +FRPP+K   SV+
Sbjct: 419  DIMERLWENEAELCSFISDILQERLGASGNKAGYSMFFLETILVPPIKFRPPSKGQISVM 478

Query: 181  EHPQNILYSKVLQANIAVVEALKSGKNQGYVFQVTNRWLNLQDAVNVVIDSNTANTMKGK 360
            EHPQ +L  KVLQANIA+  A  +   +    ++ +RW++LQ ++NV+ D  TA     +
Sbjct: 479  EHPQTVLLGKVLQANIALGNAHANNSERS---KIISRWMDLQQSINVLFDGKTAAGQGQR 535

Query: 361  DV-TGVRQLLEKKEGLFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPEK 537
            D  +G+ QLLEKKEG+FRQ MMGKRVN+ACRSVISPDPYLAVNEIGIPPYFALRLTYPEK
Sbjct: 536  DTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEK 595

Query: 538  VTPWNEEKLRQAIRNGPHVYPGATHFEDEQGMVDLSKILPHQRNSIAKKLLSTRG-VASS 714
            VTPWN  KLR AI NGP ++PGATH+ D+   V L+ +    R SI++KL S+RG VA  
Sbjct: 596  VTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLA-VNKKMRISISRKLPSSRGVVAQP 654

Query: 715  GTSVENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSMMAHIARVLKGEKTLRMHYAN 894
            G S      N+ EGK+VYRHLQDGD++LVNRQPTLHKPS+MAH+ RVLKGEKTLRMHYAN
Sbjct: 655  GRS----SDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYAN 710

Query: 895  C------------------SAYNADFDGDEMNVHFPQDEISRAEAYSIVNANKQYTVPTS 1020
            C                  S YNADFDGDEMNVHFPQDEISRAEAY+IVNAN QY VP+ 
Sbjct: 711  CRVESEHISMLDLDDCSDSSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSR 770

Query: 1021 GDPIRGLIQDHIVSATLLTKRDTFLSKEEYQNLVYSACIXXXXXXXXXXXXQPKVAICKE 1200
            GDPIRGLIQDHIVSA LLTK+DTFL++E+Y  L+YS+ +            + KV++   
Sbjct: 771  GDPIRGLIQDHIVSAVLLTKKDTFLTREQYNQLLYSSGLSSGSGSFIGKPGK-KVSVLDS 829

Query: 1201 DGLFVSLPPAVWKPVPLWTGKQVITTILDYITRGSLPFSMKKLGRVPAIYWGRE------ 1362
            +     L PA+WKP PLW+GKQVIT +L++ITRG  PF+ +K G++P  Y+G E      
Sbjct: 830  EDEMQPLLPAIWKPEPLWSGKQVITAVLNHITRGRKPFTTEKDGKIPREYFGSEIDEKKS 889

Query: 1363 -------------------SWELEVVIQNNELVCGVIDKAQFGKYGLVHVVHELYGADAA 1485
                                 E +++I  NELV GVIDKAQF KYGLVH+V ELYG++ A
Sbjct: 890  GKGKDPGSDRRKEKRIEKKHGEYKLLIHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTA 949

Query: 1486 GRLLSVFSRLFTCFMQMHGFTCGAVDLLLFPHAEI 1590
            G LLSV SRLFT F+QMHGFTCG  DLL+ P+ +I
Sbjct: 950  GILLSVLSRLFTVFLQMHGFTCGVDDLLISPNYDI 984


>ref|XP_002981487.1| hypothetical protein SELMODRAFT_233747 [Selaginella moellendorffii]
            gi|300150653|gb|EFJ17302.1| hypothetical protein
            SELMODRAFT_233747 [Selaginella moellendorffii]
          Length = 1578

 Score =  603 bits (1556), Expect = e-170
 Identities = 313/548 (57%), Positives = 386/548 (70%), Gaps = 20/548 (3%)
 Frame = +1

Query: 4    HLRLLWENETRICCLMWD-IQQEKKNSWKQAPSYEMFFLQVLLVPPSRFRPPNKVGTSVL 180
            HL  LW NE ++C L+W  +   K  S  +     +FFL+ L V P+RFRPPN V   +L
Sbjct: 254  HLSALWRNEEKLCSLIWGGVGTGKSPSPARKDGLSLFFLEALAVTPNRFRPPNYVNNQLL 313

Query: 181  EHPQNILYSKVLQANIAVVEAL-KSGKNQGYVFQVTNRWLNLQDAVNVVIDSNTAN---- 345
            EHPQN LY  V++ NI + + + +SG       ++   WL LQ+AVN +IDS T      
Sbjct: 314  EHPQNKLYEVVVEKNIQLSDLITESGAKSEDGLRL---WLELQNAVNELIDSTTGIFVSM 370

Query: 346  ------------TMKGKDVT-GVRQLLEKKEGLFRQNMMGKRVNYACRSVISPDPYLAVN 486
                         + GKD   G+RQLLEKK+GLFR NMMGKRVN+ CRSVISPDP++AVN
Sbjct: 371  MSYLQSFRFLCVAVAGKDRNVGIRQLLEKKQGLFRWNMMGKRVNHTCRSVISPDPFIAVN 430

Query: 487  EIGIPPYFALRLTYPEKVTPWNEEKLRQAIRNGPHVYPGATHFEDEQGM-VDLSKILPHQ 663
            EIGIPP FA++LTYPEKVT +N E+LR+ + NGP+V+PGATH EDE G+ V L  +   Q
Sbjct: 431  EIGIPPNFAVKLTYPEKVTAYNFERLRRNVENGPNVHPGATHVEDELGVRVSLEYLKDWQ 490

Query: 664  RNSIAKKLLSTRGVASSGTSVENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSMMAH 843
            R + AK LLST G     T+ + I   K+ GK VYRHLQDGD+LL NRQPTLHKP +M H
Sbjct: 491  RVATAKTLLSTPGA----TATDTIKKEKLIGKTVYRHLQDGDILLANRQPTLHKPGVMGH 546

Query: 844  IARVLKGEKTLRMHYANCSAYNADFDGDEMNVHFPQDEISRAEAYSIVNANKQYTVPTSG 1023
             ARV+KG++ LR+HYANCS YNADFDGDEMNVHFPQDE+ RAEAY IVNAN+QY VPTSG
Sbjct: 547  KARVIKGQRALRLHYANCSTYNADFDGDEMNVHFPQDELGRAEAYLIVNANQQYIVPTSG 606

Query: 1024 DPIRGLIQDHIVSATLLTKRDTFLSKEEYQNLVYSACIXXXXXXXXXXXXQPKVAICKED 1203
            +PIRGLIQDHI+SATLLTK+DTFL+KEEY  LVYSAC+               V      
Sbjct: 607  EPIRGLIQDHIISATLLTKKDTFLTKEEYHQLVYSACVPMPTLESATFSKGRNVKTLDNH 666

Query: 1204 GLFVSLPPAVWKPVPLWTGKQVITTILDYITRGSLPFSMKKLGRVPAIYWGRESWELEVV 1383
                ++PPA+WKP  LW+GKQV+TTIL+Y+TRG  PFSM++  RV   Y G+ S EL+V+
Sbjct: 667  PAIETVPPAIWKPRCLWSGKQVLTTILNYVTRGRPPFSMERGIRVSGDYIGKTSEELKVL 726

Query: 1384 IQNNELVCGVIDKAQFGKYGLVHVVHELYGADAAGRLLSVFSRLFTCFMQMHGFTCGAVD 1563
            ++ N+ +CG+IDKAQFGK+GLVH V ELYGAD AG LLSVFSRLFT ++ MHGFTCG  D
Sbjct: 727  VRGNDFLCGIIDKAQFGKFGLVHTVQELYGADDAGHLLSVFSRLFTSYLFMHGFTCGIAD 786

Query: 1564 LLLFPHAE 1587
            +LL P AE
Sbjct: 787  MLLLPGAE 794


>ref|XP_004967186.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Setaria
            italica]
          Length = 1682

 Score =  597 bits (1540), Expect = e-168
 Identities = 312/541 (57%), Positives = 382/541 (70%), Gaps = 14/541 (2%)
 Frame = +1

Query: 7    LRLLWENETRICCLMWDIQQEKKNSWKQAPSYEMFFLQVLLVPPSRFRPPNKVGTSVLEH 186
            L+ LW+NE R C L+ D QQ+  +  ++   YEMFFL  LLV P+RFRP       ++EH
Sbjct: 314  LKGLWKNEARFCMLLCDFQQDTLSVSEKRKGYEMFFLNSLLVAPNRFRPSTSSSLGIMEH 373

Query: 187  PQNILYSKVLQANIAVVEALKSGKNQGYVFQVTNRWLNLQDAVNVVIDSNTANTMKGKDV 366
            PQN+L SKV +AN+A+     S  +      V  RW++LQ +VNV+ DS+       K+ 
Sbjct: 374  PQNVLLSKVQEANLALQHNSASSNHM----DVLRRWMDLQRSVNVLYDSSKGIVKSEKNA 429

Query: 367  TGVRQLLEKKEGLFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTP 546
             G+RQLLEKKEG+ RQ MMGKRVNYACRSVISPDPYLAVNEIGIPP FA RLTYPEKVTP
Sbjct: 430  HGIRQLLEKKEGILRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPVFATRLTYPEKVTP 489

Query: 547  WNEEKLRQAIRNGPHVYPGATHFEDEQGMVDLSKILPHQRNSIAKKLLSTRGVASSGTSV 726
            WN +KL++A+RNG  ++PGATH+ D   +  L +  P +R +IAK L ++RG  S     
Sbjct: 490  WNAKKLQEAVRNGADIHPGATHYRDNSNIYKL-QAAPAKRRAIAKMLPASRGSISQPGKD 548

Query: 727  ENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSMMAHIARVLKGEKTLRMHYANCSAY 906
             N +    E KVVYRHLQDGD++LVNRQPTLHKPSMMAH  RVL GEKT+RMHYANCS Y
Sbjct: 549  PNCE---FESKVVYRHLQDGDIVLVNRQPTLHKPSMMAHFVRVLPGEKTIRMHYANCSTY 605

Query: 907  NADFDGDEMNVHFPQDEISRAEAYSIVNANKQYTVPTSGDPIRGLIQDHIVSATLLTKRD 1086
            NADFDGDEMNVHFPQDEISRAEA +IV+ANKQY  P SGD +RGLIQDHIV A LLTK+D
Sbjct: 606  NADFDGDEMNVHFPQDEISRAEAMNIVDANKQYIGPRSGDAVRGLIQDHIVGAVLLTKQD 665

Query: 1087 TFLSKEEYQNLVYSACIXXXXXXXXXXXXQP--KVAICKEDGLFVSLPPAVWKPVPLWTG 1260
            T LS+EEY  LVY +C+            QP  KV+  K+D     + PA+ KP PLWTG
Sbjct: 666  TLLSREEYSQLVYGSCV-----PSNWGPRQPGIKVSAIKDDDALGFVLPAILKPKPLWTG 720

Query: 1261 KQVITTILDYITRGSLPFSMKKLGRV------PAIYWGRES------WELEVVIQNNELV 1404
            KQVITTIL+++T+G  PF++++ G++      P  +   ES       EL + I+NNEL+
Sbjct: 721  KQVITTILNHLTKGRSPFTVEQKGKISEEHLTPKKFEESESERKIAISELVLYIKNNELI 780

Query: 1405 CGVIDKAQFGKYGLVHVVHELYGADAAGRLLSVFSRLFTCFMQMHGFTCGAVDLLLFPHA 1584
             G+IDKAQFG+YG+VH VHELYGAD AG LLS FSRLFT F+Q HGFTCG  DLLL   A
Sbjct: 781  KGMIDKAQFGQYGIVHTVHELYGADTAGILLSTFSRLFTLFLQFHGFTCGVDDLLLCQKA 840

Query: 1585 E 1587
            +
Sbjct: 841  D 841


>ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Capsella rubella]
            gi|482559195|gb|EOA23386.1| hypothetical protein
            CARUB_v10016563mg [Capsella rubella]
          Length = 1651

 Score =  597 bits (1539), Expect = e-168
 Identities = 307/546 (56%), Positives = 388/546 (71%), Gaps = 24/546 (4%)
 Frame = +1

Query: 7    LRLLWENETRICCLMWDIQQEKKNSWKQAPSYEMFFLQVLLVPPSRFRPPNKVGTSVLEH 186
            L+ LWENE   C  + D+ Q    S  +   Y MFFL+ +LVPP +FRPP K G SV+EH
Sbjct: 299  LKNLWENEHEYCSFIGDLWQ----SGSEKIDYSMFFLESVLVPPIKFRPPTKGGDSVMEH 354

Query: 187  PQNILYSKVLQANIAVVEALKSGKNQGYVFQVTNRWLNLQDAVNVVIDSNTANTMKGKDV 366
            PQ +  +KVL +NI +  A  +  +Q    +V +RW+NLQ++VNV+ DS  A+    KD 
Sbjct: 355  PQTVGLNKVLLSNITLGNACTNKLDQS---KVISRWMNLQESVNVLFDSKAASVQSQKDG 411

Query: 367  TGVRQLLEKKEGLFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTP 546
            +G+ QLLEKKEGLFRQ MMGKRVN+ACRSVISPDPY+AVNEIGIPP FAL+L YPE+VTP
Sbjct: 412  SGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVNEIGIPPCFALKLIYPERVTP 471

Query: 547  WNEEKLRQAIRNGPHVYPGATHFEDEQGMVDLSKILPHQRNSIAKKLLSTRGVASSGTSV 726
            WN EKLR+AI NGP V+PGATH+ D+   V L   +  +R +IA KLLS+RG  +     
Sbjct: 472  WNVEKLREAIINGPDVHPGATHYSDKLSTVKLPSSVK-ERTAIANKLLSSRGATTELGKT 530

Query: 727  ENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSMMAHIARVLKGEKTLRMHYANCSAY 906
             +I+    EGKVVYR ++DGDV+LVNRQPTLHKPS+MAHI RVLKGEKTLR+HYANCS Y
Sbjct: 531  CDIN---FEGKVVYRQMRDGDVVLVNRQPTLHKPSLMAHIVRVLKGEKTLRLHYANCSTY 587

Query: 907  NADFDGDEMNVHFPQDEISRAEAYSIVNANKQYTVPTSGDPIRGLIQDHIVSATLLTKRD 1086
            NADFDGDEMNVHFPQDEISRAEAY+IVNAN QY  P++GDP+R LIQDHIVS+ LLTKRD
Sbjct: 588  NADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGDPLRALIQDHIVSSVLLTKRD 647

Query: 1087 TFLSKEEYQNLVYSACIXXXXXXXXXXXXQPKVAICKEDGLFVSLPPAVWKPVPLWTGKQ 1266
            TFL K+ +  L++S+ +              KV I   D   +++ PA+ KPVPLWTGKQ
Sbjct: 648  TFLDKDLFNQLLFSSGVTDMVLSSFSGKSGKKVTISASDAELLTVMPAILKPVPLWTGKQ 707

Query: 1267 VITTILDYITRGSLPFSMKKLGRVPAIY------------------------WGRESWEL 1374
            VITT+L+ IT+G  PF+++K  ++P  +                        W ++  E 
Sbjct: 708  VITTVLNLITKGHPPFTVEKATKLPVDFFKCRSREVKPNTGDLTKKKDIDESWKQDLNED 767

Query: 1375 EVVIQNNELVCGVIDKAQFGKYGLVHVVHELYGADAAGRLLSVFSRLFTCFMQMHGFTCG 1554
            +++I+ NE VCGVIDKAQF  +G+VH VHELYG++AAG LLSVFSRLFT F+Q+HGFTCG
Sbjct: 768  KLLIRKNEFVCGVIDKAQFADFGMVHTVHELYGSNAAGNLLSVFSRLFTAFLQIHGFTCG 827

Query: 1555 AVDLLL 1572
              DL++
Sbjct: 828  VDDLII 833


>ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arabidopsis lyrata subsp.
            lyrata] gi|297322267|gb|EFH52688.1| hypothetical protein
            ARALYDRAFT_486216 [Arabidopsis lyrata subsp. lyrata]
          Length = 1678

 Score =  590 bits (1522), Expect = e-166
 Identities = 303/546 (55%), Positives = 387/546 (70%), Gaps = 24/546 (4%)
 Frame = +1

Query: 7    LRLLWENETRICCLMWDIQQEKKNSWKQAPSYEMFFLQVLLVPPSRFRPPNKVGTSVLEH 186
            L+ LWENE   C  + D+ Q    S  +   Y MFFL+ +LVPP +FRP  K G SV+EH
Sbjct: 313  LKDLWENEHDFCSFIGDLWQ----SGSEKIDYSMFFLESVLVPPIKFRPSTKGGDSVMEH 368

Query: 187  PQNILYSKVLQANIAVVEALKSGKNQGYVFQVTNRWLNLQDAVNVVIDSNTANTMKGKDV 366
            PQ +  +KVL +NI +  A  +  +Q    ++ +RW+NLQ++VNV+ DS TA     ++ 
Sbjct: 369  PQTVGLNKVLGSNIQLGNACTNKLDQS---KIISRWMNLQESVNVLFDSKTATVQSQREG 425

Query: 367  TGVRQLLEKKEGLFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTP 546
            +G+ QLLEKKEGLFRQ MMGKRVN+ACRSVISPDPY+AVN+IGIPP FAL+LTYPE+VTP
Sbjct: 426  SGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVNDIGIPPCFALKLTYPERVTP 485

Query: 547  WNEEKLRQAIRNGPHVYPGATHFEDEQGMVDLSKILPHQRNSIAKKLLSTRGVASSGTSV 726
            WN EKLR+AI NGP ++PGATH+ D+   V L       R +IA+KLLS+RG  +     
Sbjct: 486  WNVEKLREAIINGPDIHPGATHYSDKLSTVKLPST-EKARRAIARKLLSSRGATTELGKT 544

Query: 727  ENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSMMAHIARVLKGEKTLRMHYANCSAY 906
             +I+    EGK V+RH++DGDV+LVNRQPTLHKPS+MAHI RVL+GEKTLR+HYANCS Y
Sbjct: 545  CDIN---FEGKTVHRHMRDGDVVLVNRQPTLHKPSLMAHIVRVLRGEKTLRLHYANCSTY 601

Query: 907  NADFDGDEMNVHFPQDEISRAEAYSIVNANKQYTVPTSGDPIRGLIQDHIVSATLLTKRD 1086
            NADFDGDEMNVHFPQDEISRAEAY+IVNAN QY  P++GDP+R LIQDHIVS+ LLTKRD
Sbjct: 602  NADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGDPLRALIQDHIVSSVLLTKRD 661

Query: 1087 TFLSKEEYQNLVYSACIXXXXXXXXXXXXQPKVAICKEDGLFVSLPPAVWKPVPLWTGKQ 1266
            TFL K+ +  L++S+ +              KV +   D   +++ PA+ KPVPLWTGKQ
Sbjct: 662  TFLDKDHFNQLLFSSGVTDMVLSSFSGRSGKKVMVSASDAELLTVTPAILKPVPLWTGKQ 721

Query: 1267 VITTILDYITRGSLPFSMKKLGRVPAIYWG-------------------RESW-----EL 1374
            VIT +L+ IT+G  PF+++K  ++P  ++                     ESW     E 
Sbjct: 722  VITAVLNQITKGHPPFTVEKATKLPVDFFKCRSREVKPNSGDLTKKKKIDESWKQNLNED 781

Query: 1375 EVVIQNNELVCGVIDKAQFGKYGLVHVVHELYGADAAGRLLSVFSRLFTCFMQMHGFTCG 1554
            +++I+ NE VCGVIDKAQF  YGLVH VHELYG++AAG LLSVFSRLFT F+Q+HGFTCG
Sbjct: 782  KLLIRKNEFVCGVIDKAQFADYGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQIHGFTCG 841

Query: 1555 AVDLLL 1572
              DL++
Sbjct: 842  VDDLII 847


>ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
            max]
          Length = 1651

 Score =  590 bits (1521), Expect = e-166
 Identities = 308/542 (56%), Positives = 385/542 (71%), Gaps = 20/542 (3%)
 Frame = +1

Query: 7    LRLLWENETRICCLMWDIQQEKKNSWKQAPSYEMFFLQVLLVPPSRFRPPNKVGTSVLEH 186
            L LLWENE R+C  + DIQ +    + +   + MFFL+ + VPP +FRPP K G +V+EH
Sbjct: 296  LELLWENEARLCSYINDIQDQ---GFGKKAGHSMFFLENIFVPPIKFRPPTKGGDNVMEH 352

Query: 187  PQNILYSKVLQANIAVVEALKSGKNQGYVFQVTNRWLNLQDAVNVVIDSNTANTMKGKDV 366
            PQ +L +KVLQ NI++ +A     N+    +V +RW++LQ +VN++ D+ TA+  K    
Sbjct: 353  PQTVLLTKVLQCNISLGDA---HLNKSDPSKVLSRWMDLQQSVNMLFDNKTASG-KRDVA 408

Query: 367  TGVRQLLEKKEGLFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTP 546
            TG+ QLLEKKEG+FRQ MMGKRVN+ACRSVISPDPYLAVNEIGIPPYFALRL+YPE+VTP
Sbjct: 409  TGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLSYPERVTP 468

Query: 547  WNEEKLRQAIRNGPHVYPGATHFEDEQGMVDL---SKILPHQRNSIAKKLLSTRGVASSG 717
            WN  KLR AI NGP  +PGATH+ D+  +V L    K+L    +  ++KL ++RGV    
Sbjct: 469  WNVVKLRNAILNGPESHPGATHYADKVSIVKLPPKGKLL----SLTSRKLPTSRGVI--- 521

Query: 718  TSVENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSMMAHIARVLKGEKTLRMHYANC 897
                 I  ++ EGKVVYRHL+DGDV+LVNRQPTLHKPS+MAHI RVLKGEKT+RMHYANC
Sbjct: 522  LHQGKISDHEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHIVRVLKGEKTVRMHYANC 581

Query: 898  SAYNADFDGDEMNVHFPQDEISRAEAYSIVNANKQYTVPTSGDPIRGLIQDHIVSATLLT 1077
            S YNADFDGDE+NVHFPQDEISRAEAY+IVNAN QY  PTSGDPIR LIQDHIVSA LLT
Sbjct: 582  STYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLT 641

Query: 1078 KRDTFLSKEEYQNLVYSACIXXXXXXXXXXXXQPKVAICKEDGLFVSLPPAVWKPVPLWT 1257
            K+DTFLS EE+  L+YS+ +              KV I   +      PPA+WKP PLWT
Sbjct: 642  KKDTFLSYEEFNQLLYSSGVSMAGLGSFYGKHGQKVFISNSESEMFLFPPAIWKPEPLWT 701

Query: 1258 GKQVITTILDYITRGSLPFSMKKLGRVPAIYWGRE-----------------SWELEVVI 1386
            GKQVI+ +L YITRGS PF+ +K  ++P+ ++  +                   E +++I
Sbjct: 702  GKQVISALLYYITRGSPPFTAEKNAKIPSNFFKTQIRKGKRYTEDTSKKKDKPDEDKLLI 761

Query: 1387 QNNELVCGVIDKAQFGKYGLVHVVHELYGADAAGRLLSVFSRLFTCFMQMHGFTCGAVDL 1566
              N+LV GV+DKAQFG YG++H V ELYG++ AG LLS  SRLFT F+QMHGFTCG  DL
Sbjct: 762  YKNDLVRGVVDKAQFGDYGMIHTVQELYGSNVAGNLLSALSRLFTTFLQMHGFTCGVDDL 821

Query: 1567 LL 1572
            +L
Sbjct: 822  ML 823


>dbj|BAD35511.1| putative RNA polymerase A(I) large subunit [Oryza sativa Japonica
            Group]
          Length = 1748

 Score =  590 bits (1521), Expect = e-166
 Identities = 302/539 (56%), Positives = 377/539 (69%), Gaps = 11/539 (2%)
 Frame = +1

Query: 7    LRLLWENETRICCLMWDIQQEKKNSWKQAPSYEMFFLQVLLVPPSRFRPPNKVGTSVLEH 186
            L+ LW+ E R C L+ D QQ   +  ++   YEMFFL+ LLV P+RFRP       ++EH
Sbjct: 304  LKDLWKKEARFCMLLCDFQQNTLSVSEKRRGYEMFFLKNLLVAPNRFRPSISSSLGIMEH 363

Query: 187  PQNILYSKVLQANIAVVEALKSGKNQGYVFQVTNRWLNLQDAVNVVIDSNTANTMKGKDV 366
            PQN+L SKV ++N+A+ +++ +  +     +V  RW++LQ  VNV+ DS+   +   K+ 
Sbjct: 364  PQNVLLSKVQESNLALQQSIAASNHM----EVLRRWMDLQRNVNVLYDSSKGLSKNEKNA 419

Query: 367  TGVRQLLEKKEGLFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTP 546
             G+RQLLEKKEG+ RQ MMGKRVNYACRSVISPDPYLAVNEIGIPP FA RLTYPEKVTP
Sbjct: 420  NGIRQLLEKKEGILRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPVFATRLTYPEKVTP 479

Query: 547  WNEEKLRQAIRNGPHVYPGATHFEDEQGMVDLSKILPHQRNSIAKKLLSTRGVASSGTSV 726
            WN  KL++AI NG  ++PGATH+ D   M  L +  P +R +IAK L ++RG  S     
Sbjct: 480  WNARKLQEAINNGADIHPGATHYRDNNNMYKL-QAAPPKRRAIAKMLPASRGSISQPGKD 538

Query: 727  ENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSMMAHIARVLKGEKTLRMHYANCSAY 906
               +    E KVVYRHLQDGDV+LVNRQPTLHKPSMMAH+ RVL GEKT+RMHYANCS Y
Sbjct: 539  PKCE---FESKVVYRHLQDGDVVLVNRQPTLHKPSMMAHVVRVLPGEKTIRMHYANCSTY 595

Query: 907  NADFDGDEMNVHFPQDEISRAEAYSIVNANKQYTVPTSGDPIRGLIQDHIVSATLLTKRD 1086
            NADFDGDEMNVHFPQDEISRAEA +IV+ANKQY  P SGD +RGLIQDHI+ A LLTK D
Sbjct: 596  NADFDGDEMNVHFPQDEISRAEAINIVDANKQYIGPRSGDAVRGLIQDHIIGAVLLTKLD 655

Query: 1087 TFLSKEEYQNLVYSACIXXXXXXXXXXXXQPKVAICKEDGLFVSLPPAVWKPVPLWTGKQ 1266
            TFLS+EEY  LVY + +              K++I  +D     +PPA+WKP PLWTGKQ
Sbjct: 656  TFLSREEYNQLVYGSVLSSTRRSGQFG---KKISIIMDDDALEPVPPAIWKPKPLWTGKQ 712

Query: 1267 VITTILDYITRGSLPFSMKKLGRVPAIYWGRES-----------WELEVVIQNNELVCGV 1413
            VITTIL+++T+G  PF+++K GR+   Y   E             E  + + +NEL+ G+
Sbjct: 713  VITTILNHVTKGRPPFTVEKKGRIEKEYLIPEERNGDKVKTINPSEQVLYVHDNELIKGM 772

Query: 1414 IDKAQFGKYGLVHVVHELYGADAAGRLLSVFSRLFTCFMQMHGFTCGAVDLLLFPHAEI 1590
            IDKAQFG YG+VH VHELYG + AG LLS FSRLFT  +Q+HGFTCG  DLLL   +++
Sbjct: 773  IDKAQFGNYGIVHTVHELYGPETAGVLLSSFSRLFTMVLQLHGFTCGVDDLLLSQESDM 831


>gb|EEE66008.1| hypothetical protein OsJ_21959 [Oryza sativa Japonica Group]
          Length = 994

 Score =  590 bits (1521), Expect = e-166
 Identities = 302/539 (56%), Positives = 377/539 (69%), Gaps = 11/539 (2%)
 Frame = +1

Query: 7    LRLLWENETRICCLMWDIQQEKKNSWKQAPSYEMFFLQVLLVPPSRFRPPNKVGTSVLEH 186
            L+ LW+ E R C L+ D QQ   +  ++   YEMFFL+ LLV P+RFRP       ++EH
Sbjct: 86   LKDLWKKEARFCMLLCDFQQNTLSVSEKRRGYEMFFLKNLLVAPNRFRPSISSSLGIMEH 145

Query: 187  PQNILYSKVLQANIAVVEALKSGKNQGYVFQVTNRWLNLQDAVNVVIDSNTANTMKGKDV 366
            PQN+L SKV ++N+A+ +++ +  +     +V  RW++LQ  VNV+ DS+   +   K+ 
Sbjct: 146  PQNVLLSKVQESNLALQQSIAASNHM----EVLRRWMDLQRNVNVLYDSSKGLSKNEKNA 201

Query: 367  TGVRQLLEKKEGLFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTP 546
             G+RQLLEKKEG+ RQ MMGKRVNYACRSVISPDPYLAVNEIGIPP FA RLTYPEKVTP
Sbjct: 202  NGIRQLLEKKEGILRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPVFATRLTYPEKVTP 261

Query: 547  WNEEKLRQAIRNGPHVYPGATHFEDEQGMVDLSKILPHQRNSIAKKLLSTRGVASSGTSV 726
            WN  KL++AI NG  ++PGATH+ D   M  L +  P +R +IAK L ++RG  S     
Sbjct: 262  WNARKLQEAINNGADIHPGATHYRDNNNMYKL-QAAPPKRRAIAKMLPASRGSISQPGKD 320

Query: 727  ENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSMMAHIARVLKGEKTLRMHYANCSAY 906
               +    E KVVYRHLQDGDV+LVNRQPTLHKPSMMAH+ RVL GEKT+RMHYANCS Y
Sbjct: 321  PKCE---FESKVVYRHLQDGDVVLVNRQPTLHKPSMMAHVVRVLPGEKTIRMHYANCSTY 377

Query: 907  NADFDGDEMNVHFPQDEISRAEAYSIVNANKQYTVPTSGDPIRGLIQDHIVSATLLTKRD 1086
            NADFDGDEMNVHFPQDEISRAEA +IV+ANKQY  P SGD +RGLIQDHI+ A LLTK D
Sbjct: 378  NADFDGDEMNVHFPQDEISRAEAINIVDANKQYIGPRSGDAVRGLIQDHIIGAVLLTKLD 437

Query: 1087 TFLSKEEYQNLVYSACIXXXXXXXXXXXXQPKVAICKEDGLFVSLPPAVWKPVPLWTGKQ 1266
            TFLS+EEY  LVY + +              K++I  +D     +PPA+WKP PLWTGKQ
Sbjct: 438  TFLSREEYNQLVYGSVLSSTRRSGQFG---KKISIIMDDDALEPVPPAIWKPKPLWTGKQ 494

Query: 1267 VITTILDYITRGSLPFSMKKLGRVPAIYWGRES-----------WELEVVIQNNELVCGV 1413
            VITTIL+++T+G  PF+++K GR+   Y   E             E  + + +NEL+ G+
Sbjct: 495  VITTILNHVTKGRPPFTVEKKGRIEKEYLIPEERNGDKVKTINPSEQVLYVHDNELIKGM 554

Query: 1414 IDKAQFGKYGLVHVVHELYGADAAGRLLSVFSRLFTCFMQMHGFTCGAVDLLLFPHAEI 1590
            IDKAQFG YG+VH VHELYG + AG LLS FSRLFT  +Q+HGFTCG  DLLL   +++
Sbjct: 555  IDKAQFGNYGIVHTVHELYGPETAGVLLSSFSRLFTMVLQLHGFTCGVDDLLLSQESDM 613


>ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            tuberosum]
          Length = 1675

 Score =  585 bits (1508), Expect = e-164
 Identities = 305/544 (56%), Positives = 385/544 (70%), Gaps = 19/544 (3%)
 Frame = +1

Query: 16   LWENETRICCLMWDIQQEKKNSWKQAPSYEMFFLQVLLVPPSRFRPPNKVGTSVLEHPQN 195
            LWENE  +C    DIQ +  N+  +     MFFL  +LVPP +FRPP K G S++EHP  
Sbjct: 312  LWENEAPLCTFFCDIQSQHHNTSGKVAGPSMFFLDSILVPPIKFRPPAKGGDSIMEHPHT 371

Query: 196  ILYSKVLQANIAVVEAL--KSGKNQGYVFQVTNRWLNLQDAVNVVIDSNTANTMKGKDV- 366
            +L  KV+QANIA+  A   ++G+++     + +R ++LQ +VNV+ DS TA+    KDV 
Sbjct: 372  VLLGKVVQANIALGNAHINRAGRSK-----IISRLMDLQQSVNVLFDSKTASGPGQKDVG 426

Query: 367  TGVRQLLEKKEGLFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTP 546
            +G+ Q+LEKKEG+FRQ MMGKRVN+ACRSVISPDPYL+VNEIGIPPYFALRLTYPE++TP
Sbjct: 427  SGICQMLEKKEGIFRQKMMGKRVNFACRSVISPDPYLSVNEIGIPPYFALRLTYPERLTP 486

Query: 547  WNEEKLRQAIRNGPHVYPGATHFEDEQGMVDLSKILPHQRNSIAKKLLSTRG-VASSGTS 723
            WN  K+R A+ NGP  +PGA  F D    V L       R +I++KL S+RG V  SG +
Sbjct: 487  WNAVKMRDAVINGPENHPGAVSFADRIATVKLPSN-KKMRVAISRKLPSSRGAVTQSGRN 545

Query: 724  VENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSMMAHIARVLKGEKTLRMHYANCSA 903
             E     + EGKVVYRHLQDGDV+LVNRQPTLHKPS+MAH+ RVLKGEKTLRMHYANCS 
Sbjct: 546  NEY----EFEGKVVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCST 601

Query: 904  YNADFDGDEMNVHFPQDEISRAEAYSIVNANKQYTVPTSGDPIRGLIQDHIVSATLLTKR 1083
            YNADFDGDEMNVHFPQDEISRAEAY+IVNAN+QY VPT GD +RGLIQDHIV A +LT +
Sbjct: 602  YNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVGAVILTMK 661

Query: 1084 DTFLSKEEYQNLVYSACIXXXXXXXXXXXXQPKVAICKEDGLFVSLPPAVWKPVPLWTGK 1263
            +TFL+  E+  L+Y + +              KV++   +G+  ++ PAVWKP PLWTGK
Sbjct: 662  NTFLTLHEFNQLLYGSGVFAAGPAPTSGNHSNKVSVVDFEGVVQTVLPAVWKPKPLWTGK 721

Query: 1264 QVITTILDYITRGSLPFSMKKLGRVPAIYWGRES---------------WELEVVIQNNE 1398
            QVIT +L+++T+G  P ++K  G++P  Y+  ES                E E +I  NE
Sbjct: 722  QVITALLNHLTKGCAPCTVKNKGKIPYPYFLSESRLVEYQSREEQEDRTAENEFLIWKNE 781

Query: 1399 LVCGVIDKAQFGKYGLVHVVHELYGADAAGRLLSVFSRLFTCFMQMHGFTCGAVDLLLFP 1578
            LV GVIDKAQFGK+GLVH + ELYG++ AG LLS  SRLFT F+Q+HGFTCG  DL++ P
Sbjct: 782  LVRGVIDKAQFGKFGLVHTIQELYGSNKAGILLSALSRLFTIFLQLHGFTCGVDDLVILP 841

Query: 1579 HAEI 1590
            H +I
Sbjct: 842  HYDI 845


>gb|ACN85301.1| putative RNA polymerase A(I) large subunit [Oryza coarctata]
          Length = 1830

 Score =  585 bits (1508), Expect = e-164
 Identities = 307/566 (54%), Positives = 375/566 (66%), Gaps = 44/566 (7%)
 Frame = +1

Query: 7    LRLLWENETRICCLMWDIQQEKKNSWKQAPSYEMFFLQVLLVPPSRFRPPNKVGTSVLEH 186
            L+ LW+NE R C L+ D QQ   N   +   YEMFFL+ LLV P+RFRP       ++EH
Sbjct: 295  LKNLWKNEARFCMLLCDFQQNTLNVSDKGRGYEMFFLKNLLVAPNRFRPSISSSLGIMEH 354

Query: 187  PQNILYSKVLQANIAVVEALKSGKNQGYVFQVTNRWLNLQDAVNVVIDSNTANTMKGKDV 366
            PQN+L  KV +AN+A+ ++  S  +     +V  RW++LQ +VNV+ DS+       K+ 
Sbjct: 355  PQNVLLGKVQEANLALQQSNTSSNHM----EVLRRWMDLQRSVNVLYDSSKGLAKSEKNA 410

Query: 367  TGVRQLLEKKEGLFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTP 546
             G+RQLLEKKEG+ RQ MMGKRVNYACRSVISPDPYLAVNEIGIPP FA RLTYPEKVTP
Sbjct: 411  NGIRQLLEKKEGILRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPVFATRLTYPEKVTP 470

Query: 547  WNEEKLRQAIRNGPHVYPGATHFEDEQGMVDLSKILPHQRNSIAKKLLSTRGVASSGTSV 726
            WN  KL++AI NG  ++PGATH+ D   M  L +  P +R +IAK L ++RG  S     
Sbjct: 471  WNARKLQEAINNGADIHPGATHYRDNNNMYKL-QAAPPKRRAIAKMLPASRGSISQPGKD 529

Query: 727  ENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSMMAHIARVLKGEKTLRMHYANCSAY 906
               +    E KVVYRHLQDGD++LVNRQPTLHKPSMMAH  RVL GEKT+RMHYANCS Y
Sbjct: 530  PKCE---FESKVVYRHLQDGDIVLVNRQPTLHKPSMMAHFVRVLPGEKTIRMHYANCSTY 586

Query: 907  NADFDGDEMNVHFPQDEISRAEAYSIVNANKQYTVPTSGDPIRGLIQDHIVSATLLTKRD 1086
            NADFDGDEMNVHFPQDEISRAEA +IV+ANKQY  P SGD +RGLIQDHIV A LLTK D
Sbjct: 587  NADFDGDEMNVHFPQDEISRAEAINIVDANKQYIGPRSGDAVRGLIQDHIVGAVLLTKLD 646

Query: 1087 TFLSKEEYQNLVYSACIXXXXXXXXXXXXQPKVAICKEDGLFVSLPPAVWKPVPLWTGKQ 1266
            TFLS+EEY  LVY +C+              K++I  +D +   +PPA+WKP PLWTGKQ
Sbjct: 647  TFLSREEYNQLVYGSCVLSSARRSGQFG--KKISIIMDDDVLEPVPPAIWKPKPLWTGKQ 704

Query: 1267 VITTILDYITRGSLPFSMKKLGRVPAIYW-----------GRESWELEVVIQNNELVCGV 1413
            VITTIL+++T+G  PF++++ G++   Y             R   EL + + +NEL+ G+
Sbjct: 705  VITTILNHVTKGHPPFTVEQQGKISKEYLIPKKCDGAKDKTRVPSELVLYVHDNELIKGM 764

Query: 1414 IDKAQFGKYGLVHVVHELYGADAAGRLLSVFSRLFT------------------------ 1521
            IDKAQFGKYG+VH VHELYG + AG LLS FSRLFT                        
Sbjct: 765  IDKAQFGKYGIVHTVHELYGPETAGVLLSAFSRLFTIVLQIRGFVELGITNSKKSWIQSC 824

Query: 1522 ---------CFMQMHGFTCGAVDLLL 1572
                      F Q+HGFTCG  DLLL
Sbjct: 825  AKRGELRTFIFFQLHGFTCGVDDLLL 850


>ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            lycopersicum]
          Length = 1677

 Score =  584 bits (1506), Expect = e-164
 Identities = 306/544 (56%), Positives = 384/544 (70%), Gaps = 19/544 (3%)
 Frame = +1

Query: 16   LWENETRICCLMWDIQQEKKNSWKQAPSYEMFFLQVLLVPPSRFRPPNKVGTSVLEHPQN 195
            LWENE  +C    DIQ + +N+  +     MFFL  +LVPP +FRPP K G S++EHP  
Sbjct: 312  LWENEAPLCTFFCDIQSQHRNTSGKVAGPSMFFLDSILVPPVKFRPPAKGGDSIMEHPHT 371

Query: 196  ILYSKVLQANIAVVEAL--KSGKNQGYVFQVTNRWLNLQDAVNVVIDSNTANTMKGKDV- 366
            +L  KV+QANIA+  A   ++G+++     + +R ++LQ +VNV+ DS TA+    KDV 
Sbjct: 372  VLLGKVIQANIALGNAHINRAGRSK-----IISRLMDLQQSVNVLFDSKTASGPGQKDVG 426

Query: 367  TGVRQLLEKKEGLFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTP 546
            +G+ Q+LEKKEG+FRQ MMGKRVN+ACRSVISPDPYL+VNEIGIPPYFA RLTYPE++TP
Sbjct: 427  SGICQMLEKKEGIFRQKMMGKRVNFACRSVISPDPYLSVNEIGIPPYFASRLTYPERLTP 486

Query: 547  WNEEKLRQAIRNGPHVYPGATHFEDEQGMVDLSKILPHQRNSIAKKLLSTRG-VASSGTS 723
            WN  K+R A+ NGP  +PGA  F D    V L       R +I++KL S+RG V  SG +
Sbjct: 487  WNAVKMRDAVINGPENHPGAISFADRIATVKLPSN-KKMRVAISRKLPSSRGAVTQSGRN 545

Query: 724  VENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSMMAHIARVLKGEKTLRMHYANCSA 903
             E     + EGKVVYRHLQDGDV+LVNRQPTLHKPS+MAH+ RVLKGEKTLRMHYANCS 
Sbjct: 546  NEY----EFEGKVVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCST 601

Query: 904  YNADFDGDEMNVHFPQDEISRAEAYSIVNANKQYTVPTSGDPIRGLIQDHIVSATLLTKR 1083
            YNADFDGDEMNVHFPQDEISRAEAY+IVNAN+QY VPT GD +RGLIQDHIV A +LT +
Sbjct: 602  YNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVGAVILTMK 661

Query: 1084 DTFLSKEEYQNLVYSACIXXXXXXXXXXXXQPKVAICKEDGLFVSLPPAVWKPVPLWTGK 1263
            +TFLS  E+  L+Y + +              KV+I   +G+  ++ PAVWKP PLWTGK
Sbjct: 662  NTFLSLHEFNQLLYGSGVFAAGPAPTSGNHSNKVSIVDFEGVVQTVLPAVWKPKPLWTGK 721

Query: 1264 QVITTILDYITRGSLPFSMKKLGRVPAIYWGRES---------------WELEVVIQNNE 1398
            QVIT +L+++T G  P ++K  G++P  Y+  ES                E E +I  NE
Sbjct: 722  QVITALLNHLTNGCPPCTVKNKGKIPYAYFLSESRLVEYQSREEQEDRTAENEFLIWKNE 781

Query: 1399 LVCGVIDKAQFGKYGLVHVVHELYGADAAGRLLSVFSRLFTCFMQMHGFTCGAVDLLLFP 1578
            LV GVIDKAQFGK+GLVH + ELYG++ AG LLS  SRLFT F+Q+HGFTCG  DL++ P
Sbjct: 782  LVRGVIDKAQFGKFGLVHTIQELYGSNKAGILLSALSRLFTIFLQLHGFTCGIDDLVILP 841

Query: 1579 HAEI 1590
            H +I
Sbjct: 842  HYDI 845


>gb|EMJ04262.1| hypothetical protein PRUPE_ppa000153mg [Prunus persica]
          Length = 1612

 Score =  584 bits (1505), Expect = e-164
 Identities = 303/562 (53%), Positives = 387/562 (68%), Gaps = 40/562 (7%)
 Frame = +1

Query: 7    LRLLWENETRICCLMWDIQQEKKNSWKQAPSYEMFFLQVLLVPPSRFRPPNKVGTSVLEH 186
            +RLLWENE+++C  + DIQ ++  +      Y MFFL+ +LVPP +FRPP+K G SV+EH
Sbjct: 216  IRLLWENESQLCSFISDIQCQETGT---NGGYSMFFLETVLVPPIKFRPPSKGGDSVMEH 272

Query: 187  PQNILYSKVLQANIAVVEALKSGKNQGYVFQVTNRWLNLQDAVNVVIDSNTANTMKGKDV 366
            PQ +L SKVL+AN+++ + L + ++     ++  RW +LQ+++NV+ +S TA     +D 
Sbjct: 273  PQTVLLSKVLEANVSLSQTLTNLEHS----RIIRRWRDLQESINVMFNSKTAAGQGQRDA 328

Query: 367  T-GVRQLLEKKEGLFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVT 543
              G+ QLLEKKEGLFRQ MMGKRVN+ACRSVISPDPYLAVNEIGIPPYFA RLTYPE+VT
Sbjct: 329  APGICQLLEKKEGLFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFATRLTYPERVT 388

Query: 544  PWNEEKLRQAIRNGPHVYPGATHFEDEQGMVDLSKILPHQRN---SIAKKLLSTRG-VAS 711
            PWN +KLR AI NG  ++PGAT + D+ G     KIL   R    SI++KL S++G V  
Sbjct: 389  PWNVDKLRNAIVNGSEIHPGATQYVDKSG----PKILRQNRRERISISRKLPSSKGAVMQ 444

Query: 712  SGTSVENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSMMAHIARVLKGEKTLRMHYA 891
             G   +N     +E K+V+RHL+DGD++LVNRQPTLHKPS+MAH+ RVLKGEKT+RMHYA
Sbjct: 445  HGKGSDN----DIESKIVHRHLRDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYA 500

Query: 892  NCSAYNADFDGDEMNVHFPQDEISRAEAYSIVNANKQYTVPTSGDPIRGLIQDHIVSATL 1071
            NCS YNADFDGDEMNVHFPQDEISR+EAY+IVNAN QY  PTSGDPIR LIQDH++SA L
Sbjct: 501  NCSTYNADFDGDEMNVHFPQDEISRSEAYNIVNANNQYVKPTSGDPIRALIQDHVISAVL 560

Query: 1072 LTKRDTFLSKEEYQNLVYSACIXXXXXXXXXXXXQPKVAICKEDGLFVSLPPAVWKPVPL 1251
            LTK+DTFL  +++  L+YS+C+              KV +   +G    L PA+WKP PL
Sbjct: 561  LTKKDTFLRWDQFNQLLYSSCVSARVSDAFSGKPDKKVFMFNSEGTMQPLLPAIWKPEPL 620

Query: 1252 WTGKQVITTILDYITRGSLPFSMKKLGRVPAIYWG------------------------- 1356
            WTGKQVIT +L++ITRGS P ++++  ++P  ++                          
Sbjct: 621  WTGKQVITALLNHITRGSPPVTVERDAKIPRGFFNCKNVEGEDKSGNDGQQKKRKPSKEQ 680

Query: 1357 ----------RESWELEVVIQNNELVCGVIDKAQFGKYGLVHVVHELYGADAAGRLLSVF 1506
                       E  E  ++I  N LV GVIDKAQFG YGLVH V E YG+D AG+LLSV 
Sbjct: 681  ATDKDSSKEKEEPDENHLLIYRNNLVRGVIDKAQFGDYGLVHTVQEFYGSDTAGKLLSVL 740

Query: 1507 SRLFTCFMQMHGFTCGAVDLLL 1572
            S LFT ++QMHGFTCG  DLLL
Sbjct: 741  SHLFTVYLQMHGFTCGIDDLLL 762


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
            polymerase I largest subunit, putative [Ricinus communis]
          Length = 1686

 Score =  584 bits (1505), Expect = e-164
 Identities = 305/557 (54%), Positives = 394/557 (70%), Gaps = 28/557 (5%)
 Frame = +1

Query: 1    DHLRLLWENETRICCLMWDIQQEKKNSWKQAPSYEMFFLQVLLVPPSRFRPPNKVGTSVL 180
            + L LLW+NE RIC  + D+QQ++    K  P+  MFFL+ +LVPP +FRPP K G SV+
Sbjct: 302  EKLELLWKNEARICSFISDLQQQEFGKRKAGPA--MFFLETILVPPIKFRPPTKGGDSVM 359

Query: 181  EHPQNILYSKVLQANIAVVEALKSGKNQGYVFQVTNRWLNLQDAVNVVIDSNTANTMKGK 360
            EHPQ +L SKVLQ+NI++ +A  + ++     ++  RWL+LQ ++N + DS TA     +
Sbjct: 360  EHPQTVLLSKVLQSNISLGDAHINKEHS----KIVRRWLDLQQSINTLFDSKTAKGPGQR 415

Query: 361  D-VTGVRQLLEKKEGLFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPEK 537
            +   G+ QLLEKKEGLFRQ MMGKRVNYACRSVISPDPY+ VNEIGIPP FA++LTYPE+
Sbjct: 416  EGAPGICQLLEKKEGLFRQKMMGKRVNYACRSVISPDPYIGVNEIGIPPCFAVKLTYPER 475

Query: 538  VTPWNEEKLRQAIRNGPHVYPGATHFEDEQGMVDLSKILPHQ--RNSIAKKLLSTRGV-- 705
            VTPWN  KLR A+ NG   +PGATH+ D+   + ++K+ P +  R SI++KL S+RG   
Sbjct: 476  VTPWNIAKLRNAVINGSECHPGATHYVDK---LSINKLPPARKARISISRKLPSSRGAVT 532

Query: 706  -ASSGTSVENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSMMAHIARVLKGEKTLRM 882
             A  G+  E       EGK+VYRHLQDGDV+LVNRQPTLHKPS+MAH+ RVLKGEKTLRM
Sbjct: 533  QAGKGSECE------FEGKIVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRM 586

Query: 883  HYANCS-AYNADFDGDEMNVHFPQDEISRAEAYSIVNANKQYTVPTSGDPIRGLIQDHIV 1059
            HYANCS  YNADFDGDEMNVHFPQDE+SRAEAY+IVNAN Q+  P++G+P+RGLIQDHIV
Sbjct: 587  HYANCSITYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQFVRPSNGEPLRGLIQDHIV 646

Query: 1060 SATLLTKRDTFLSKEEYQNLVYSACIXXXXXXXXXXXXQPKVAICKEDGLFVSLPPAVWK 1239
            SA LLTK+DTFLS++E+  L+YS+ +              KV   + +    +LPPA+WK
Sbjct: 647  SAVLLTKKDTFLSQDEFNQLLYSSGVSTVGPNSFHGRPGQKVLWSRSEDEIQTLPPAIWK 706

Query: 1240 PVPLWTGKQVITTILDYITRGSLPFSMKKLGRVPAIYW---------------------G 1356
            P PLWTGKQVIT IL++IT    PF+++K  ++P+ ++                      
Sbjct: 707  PKPLWTGKQVITAILNHITSDHPPFTVEKDAKIPSNFFKSRANEDKPCQEEKSDKDAPAE 766

Query: 1357 RESWELEVVIQNNELVCGVIDKAQFGKYGLVHVVHELYGADAAGRLLSVFSRLFTCFMQM 1536
            +E  E ++++  NELV GVIDK QFG+YGLVH VHEL G+  AG LLSV SRLFT ++QM
Sbjct: 767  KEPDEEKMLVYKNELVRGVIDKGQFGEYGLVHTVHELLGSHTAGILLSVLSRLFTAYLQM 826

Query: 1537 HGFTCGAVDLLLFPHAE 1587
            HGFTCG  DLL+  + +
Sbjct: 827  HGFTCGVDDLLILTNKD 843


>ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana]
            gi|4678281|emb|CAB41189.1| DNA-directed RNA polymerase I
            190K chain-like protein [Arabidopsis thaliana]
            gi|332646163|gb|AEE79684.1| nuclear RNA polymerase A1
            [Arabidopsis thaliana]
          Length = 1670

 Score =  583 bits (1504), Expect = e-164
 Identities = 299/546 (54%), Positives = 383/546 (70%), Gaps = 24/546 (4%)
 Frame = +1

Query: 7    LRLLWENETRICCLMWDIQQEKKNSWKQAPSYEMFFLQVLLVPPSRFRPPNKVGTSVLEH 186
            L+ LW+NE   C  + D+ Q    S  +   Y MFFL+ +LVPP++FRPP   G SV+EH
Sbjct: 311  LKHLWQNEHEFCSFIGDLWQ----SGSEKIDYSMFFLESVLVPPTKFRPPTTGGDSVMEH 366

Query: 187  PQNILYSKVLQANIAVVEALKSGKNQGYVFQVTNRWLNLQDAVNVVIDSNTANTMKGKDV 366
            PQ +  +KV+++N  +  A  +  +Q    +V  RW NLQ++VNV+ DS TA     +D 
Sbjct: 367  PQTVGLNKVIESNNILGNACTNKLDQS---KVIFRWRNLQESVNVLFDSKTATVQSQRDS 423

Query: 367  TGVRQLLEKKEGLFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTP 546
            +G+ QLLEKKEGLFRQ MMGKRVN+ACRSVISPDPY+AVN+IGIPP FAL+LTYPE+VTP
Sbjct: 424  SGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVNDIGIPPCFALKLTYPERVTP 483

Query: 547  WNEEKLRQAIRNGPHVYPGATHFEDEQGMVDLSKILPHQRNSIAKKLLSTRGVASSGTSV 726
            WN EKLR+AI NGP ++PGATH+ D+   + L       R +IA+KLLS+RG  +     
Sbjct: 484  WNVEKLREAIINGPDIHPGATHYSDKSSTMKLPST-EKARRAIARKLLSSRGATTELGKT 542

Query: 727  ENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSMMAHIARVLKGEKTLRMHYANCSAY 906
             +I+    EGK V+RH++DGD++LVNRQPTLHKPS+MAH  RVLKGEKTLR+HYANCS Y
Sbjct: 543  CDIN---FEGKTVHRHMRDGDIVLVNRQPTLHKPSLMAHKVRVLKGEKTLRLHYANCSTY 599

Query: 907  NADFDGDEMNVHFPQDEISRAEAYSIVNANKQYTVPTSGDPIRGLIQDHIVSATLLTKRD 1086
            NADFDGDEMNVHFPQDEISRAEAY+IVNAN QY  P++G+P+R LIQDHIVS+ LLTKRD
Sbjct: 600  NADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGEPLRALIQDHIVSSVLLTKRD 659

Query: 1087 TFLSKEEYQNLVYSACIXXXXXXXXXXXXQPKVAICKEDGLFVSLPPAVWKPVPLWTGKQ 1266
            TFL K+ +  L++S+ +              KV +   D   +++ PA+ KPVPLWTGKQ
Sbjct: 660  TFLDKDHFNQLLFSSGVTDMVLSTFSGRSGKKVMVSASDAELLTVTPAILKPVPLWTGKQ 719

Query: 1267 VITTILDYITRGSLPFSMKKLGRVPAIYWG-------------------RESW-----EL 1374
            VIT +L+ IT+G  PF+++K  ++P  ++                     ESW     E 
Sbjct: 720  VITAVLNQITKGHPPFTVEKATKLPVDFFKCRSREVKPNSGDLTKKKEIDESWKQNLNED 779

Query: 1375 EVVIQNNELVCGVIDKAQFGKYGLVHVVHELYGADAAGRLLSVFSRLFTCFMQMHGFTCG 1554
            ++ I+ NE VCGVIDKAQF  YGLVH VHELYG++AAG LLSVFSRLFT F+Q HGFTCG
Sbjct: 780  KLHIRKNEFVCGVIDKAQFADYGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQTHGFTCG 839

Query: 1555 AVDLLL 1572
              DL++
Sbjct: 840  VDDLII 845


>gb|EOY09358.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma cacao]
          Length = 1397

 Score =  583 bits (1502), Expect = e-164
 Identities = 311/562 (55%), Positives = 394/562 (70%), Gaps = 35/562 (6%)
 Frame = +1

Query: 10   RLLWENETRICCLMWDIQQEKKNSWKQAPSYEMFFLQVLLVPPSRFRPPNKVGTSVLEHP 189
            +LLWENE  +C ++ DIQQ+    + +   Y MFFL+ +LVPP +FR P K G SV+EHP
Sbjct: 21   KLLWENEVELCSIISDIQQQ---GFGKKVGYSMFFLETILVPPIKFRAPTKGGDSVMEHP 77

Query: 190  QNILYSKVLQANIAVVEALKSGKNQGYVFQVTNRWLNLQDAVNVVIDSNTANTMKGKDVT 369
            Q +L SKVLQANI++  A  +         V   W++LQ +VN++ DS TA + +G+DV+
Sbjct: 78   QTVLLSKVLQANISLGNAYTNNLQSSKA--VVRLWMDLQQSVNLLFDSKTAMS-QGRDVS 134

Query: 370  -GVRQLLEKKEGLFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTP 546
             G+ QLLEKKEG+FRQ MMGKRVN+ACRSVISPDPYLAVNEIGIPPYFALRLTYPE+VTP
Sbjct: 135  SGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTP 194

Query: 547  WNEEKLRQAIRNGPHVYPGATHFEDEQGMVDLSKILPHQ--RNSIAKKLLSTRG-VASSG 717
            WN  KLR+AI NG   +PGATH+ D+   +   ++ P Q  R SI++KL S+RG +A  G
Sbjct: 195  WNVVKLREAIINGSEFHPGATHYVDK---LSTKRLPPSQKARISISRKLPSSRGAIAQPG 251

Query: 718  TSVENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSMMAHIARVLKGEKTLRMHYANC 897
               +N+D  + EGK+V RHLQDGDV+LVNRQPTLHKPS+MAH+ RVLKGEKT+RMHYANC
Sbjct: 252  ---KNLDY-EFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANC 307

Query: 898  SAYNADFDGDEMNVHFPQDEISRAEAYSIVNANKQYTVPTSGDPIRGLIQDHIVSATLLT 1077
            S YNADFDGDE+NVHFPQDEISRAEAY+IVNAN QY  P++G+PIR LIQDHIVSA LLT
Sbjct: 308  STYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNGEPIRALIQDHIVSAVLLT 367

Query: 1078 KRDTFLSKEEYQNLVYSACIXXXXXXXXXXXXQPKVAICKEDGLFVSLPPAVWKPVPLWT 1257
            KRDTFLS++E+  L+YS+ +              KV +   +   + + PA+ KP PLWT
Sbjct: 368  KRDTFLSRDEFNQLLYSSGVSSLAQNSFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWT 427

Query: 1258 GKQVITTILDYITRGSLPFSMKKLGRVPAIYW---------------------------- 1353
            GKQVI+++L +ITRG  PF++ K  ++P  ++                            
Sbjct: 428  GKQVISSVLSHITRGRPPFTVGKTAKIPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAE 487

Query: 1354 ---GRESWELEVVIQNNELVCGVIDKAQFGKYGLVHVVHELYGADAAGRLLSVFSRLFTC 1524
                +E  E +++I  N+LV GVIDKAQF  YGLVH V ELYG++ AG LLSVFSRLFT 
Sbjct: 488  KNSKKEPDEEKILIYRNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTV 547

Query: 1525 FMQMHGFTCGAVDLLLFPHAEI 1590
            F+QMHGFTCG  DLL+    +I
Sbjct: 548  FLQMHGFTCGVDDLLIMEDKDI 569


>gb|EOY09357.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma cacao]
          Length = 1400

 Score =  583 bits (1502), Expect = e-164
 Identities = 311/562 (55%), Positives = 394/562 (70%), Gaps = 35/562 (6%)
 Frame = +1

Query: 10   RLLWENETRICCLMWDIQQEKKNSWKQAPSYEMFFLQVLLVPPSRFRPPNKVGTSVLEHP 189
            +LLWENE  +C ++ DIQQ+    + +   Y MFFL+ +LVPP +FR P K G SV+EHP
Sbjct: 21   KLLWENEVELCSIISDIQQQ---GFGKKVGYSMFFLETILVPPIKFRAPTKGGDSVMEHP 77

Query: 190  QNILYSKVLQANIAVVEALKSGKNQGYVFQVTNRWLNLQDAVNVVIDSNTANTMKGKDVT 369
            Q +L SKVLQANI++  A  +         V   W++LQ +VN++ DS TA + +G+DV+
Sbjct: 78   QTVLLSKVLQANISLGNAYTNNLQSSKA--VVRLWMDLQQSVNLLFDSKTAMS-QGRDVS 134

Query: 370  -GVRQLLEKKEGLFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTP 546
             G+ QLLEKKEG+FRQ MMGKRVN+ACRSVISPDPYLAVNEIGIPPYFALRLTYPE+VTP
Sbjct: 135  SGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTP 194

Query: 547  WNEEKLRQAIRNGPHVYPGATHFEDEQGMVDLSKILPHQ--RNSIAKKLLSTRG-VASSG 717
            WN  KLR+AI NG   +PGATH+ D+   +   ++ P Q  R SI++KL S+RG +A  G
Sbjct: 195  WNVVKLREAIINGSEFHPGATHYVDK---LSTKRLPPSQKARISISRKLPSSRGAIAQPG 251

Query: 718  TSVENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSMMAHIARVLKGEKTLRMHYANC 897
               +N+D  + EGK+V RHLQDGDV+LVNRQPTLHKPS+MAH+ RVLKGEKT+RMHYANC
Sbjct: 252  ---KNLDY-EFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANC 307

Query: 898  SAYNADFDGDEMNVHFPQDEISRAEAYSIVNANKQYTVPTSGDPIRGLIQDHIVSATLLT 1077
            S YNADFDGDE+NVHFPQDEISRAEAY+IVNAN QY  P++G+PIR LIQDHIVSA LLT
Sbjct: 308  STYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNGEPIRALIQDHIVSAVLLT 367

Query: 1078 KRDTFLSKEEYQNLVYSACIXXXXXXXXXXXXQPKVAICKEDGLFVSLPPAVWKPVPLWT 1257
            KRDTFLS++E+  L+YS+ +              KV +   +   + + PA+ KP PLWT
Sbjct: 368  KRDTFLSRDEFNQLLYSSGVSSLAQNSFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWT 427

Query: 1258 GKQVITTILDYITRGSLPFSMKKLGRVPAIYW---------------------------- 1353
            GKQVI+++L +ITRG  PF++ K  ++P  ++                            
Sbjct: 428  GKQVISSVLSHITRGRPPFTVGKTAKIPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAE 487

Query: 1354 ---GRESWELEVVIQNNELVCGVIDKAQFGKYGLVHVVHELYGADAAGRLLSVFSRLFTC 1524
                +E  E +++I  N+LV GVIDKAQF  YGLVH V ELYG++ AG LLSVFSRLFT 
Sbjct: 488  KNSKKEPDEEKILIYRNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTV 547

Query: 1525 FMQMHGFTCGAVDLLLFPHAEI 1590
            F+QMHGFTCG  DLL+    +I
Sbjct: 548  FLQMHGFTCGVDDLLIMEDKDI 569