BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00006058
         (890 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABK24406.1| unknown [Picea sitchensis]                             295   1e-77
ref|XP_006840722.1| hypothetical protein AMTR_s00096p00105910 [A...   249   7e-64
ref|XP_004158319.1| PREDICTED: peptide deformylase 1B, chloropla...   246   1e-62
ref|XP_006288433.1| hypothetical protein CARUB_v10001691mg [Caps...   244   4e-62
ref|XP_002300047.2| hypothetical protein POPTR_0001s35190g [Popu...   243   7e-62
ref|XP_002873683.1| predicted protein [Arabidopsis lyrata subsp....   243   9e-62
gb|AAG33980.1|AF269165_1 peptide deformylase [Arabidopsis thaliana]   242   1e-61
ref|NP_196970.1| peptide deformylase 1B [Arabidopsis thaliana] g...   242   1e-61
ref|XP_002276964.1| PREDICTED: peptide deformylase 1B, chloropla...   242   2e-61
gb|AAM62644.1| Formylmethionine deformylase [Arabidopsis thaliana]    241   2e-61
ref|XP_004306350.1| PREDICTED: peptide deformylase 1B, chloropla...   241   3e-61
gb|EOY02424.1| Polypeptide deformylase, putative isoform 1 [Theo...   241   3e-61
pdb|3CPM|A Chain A, Plant Peptide Deformylase Pdf1b Crystal Stru...   239   8e-61
ref|XP_006369928.1| hypothetical protein POPTR_0001s35190g [Popu...   239   1e-60
gb|EMJ17002.1| hypothetical protein PRUPE_ppa009947mg [Prunus pe...   238   2e-60
ref|XP_002521451.1| polypeptide deformylase, putative [Ricinus c...   238   3e-60
ref|XP_006399979.1| hypothetical protein EUTSA_v10014367mg [Eutr...   237   4e-60
gb|EOY02428.1| Polypeptide deformylase, putative isoform 5 [Theo...   236   8e-60
gb|AFW83381.1| hypothetical protein ZEAMMB73_684024 [Zea mays] g...   232   1e-58
ref|XP_006470303.1| PREDICTED: peptide deformylase 1B, chloropla...   230   5e-58

>gb|ABK24406.1| unknown [Picea sitchensis]
          Length = 290

 Score =  295 bits (756), Expect = 1e-77
 Identities = 161/282 (57%), Positives = 190/282 (67%), Gaps = 23/282 (8%)
 Frame = +2

Query: 113 MALMNLASAKPPS---------LLLNSFTPFISSSNTLNFHRRNISFSRSRF----PLLS 253
           MA+  + S  PP+            N   PF SS +  +     +   ++ F    P  S
Sbjct: 1   MAMTKMVSLNPPASSALRGSSPFFFNGLLPFASSISRSSPQTTKVISLKASFQAKGPPNS 60

Query: 254 THGITSSVSKVFAKI----------GLKEELRKSVADKDIAVSDLHYDLPLKIVKYPDPR 403
             GI  SV+ V  K+          G   ELRK   ++D A S+L Y+LPLKIVKYPD R
Sbjct: 61  PRGI-GSVNGVNLKLRMGVMSQARRGFLSELRKMKEEEDFA-SELQYELPLKIVKYPDSR 118

Query: 404 LRAKNMRVKCFDESLQVLVKAMFDIMYRTDGCGLSAPQVGVNVQLMVFNPAGEPGKGEEI 583
           LRAKN  +  FDE LQ L   MFD+MY+TDG GLSAPQVGVNVQLMVFNPAGE GKGEE+
Sbjct: 119 LRAKNKPINIFDEKLQRLADEMFDLMYKTDGVGLSAPQVGVNVQLMVFNPAGESGKGEEV 178

Query: 584 VLVNPEIYKYSVKTDVLNEGCLSFPNIYGDIERPISVKIKAWDAKGKKFILNLKEFHGRI 763
           +LVNPEIYKYS + +V  EGCLSFP IY D+ERP+SVKI+AWD KGKKFIL+LKEF+ RI
Sbjct: 179 ILVNPEIYKYSKRKEVFTEGCLSFPEIYADVERPMSVKIEAWDVKGKKFILSLKEFNARI 238

Query: 764 FQHEYDHLEGILFFERMDPKTLEIVRPSLQDLEQKYESETGM 889
           FQHEYDHL+ ILFFERM P  LE +RP+LQDLEQKYE  TGM
Sbjct: 239 FQHEYDHLQRILFFERMHPDILETIRPALQDLEQKYEIRTGM 280


>ref|XP_006840722.1| hypothetical protein AMTR_s00096p00105910 [Amborella trichopoda]
           gi|548842467|gb|ERN02397.1| hypothetical protein
           AMTR_s00096p00105910 [Amborella trichopoda]
          Length = 273

 Score =  249 bits (637), Expect = 7e-64
 Identities = 118/180 (65%), Positives = 145/180 (80%)
 Frame = +2

Query: 350 SDLHYDLPLKIVKYPDPRLRAKNMRVKCFDESLQVLVKAMFDIMYRTDGCGLSAPQVGVN 529
           +DL Y+ PLKIV+YPDPRLR +N RV  FDE+L+ LV  MFD+MY+TDG GLSAPQVG+N
Sbjct: 73  ADLSYEAPLKIVEYPDPRLRVRNKRVSVFDENLKELVAEMFDVMYKTDGIGLSAPQVGIN 132

Query: 530 VQLMVFNPAGEPGKGEEIVLVNPEIYKYSVKTDVLNEGCLSFPNIYGDIERPISVKIKAW 709
           VQLMVFNPAGE G+GEE+VL+NP++YKYS K  + +EGCLSFP IY D+ERP SVKI A 
Sbjct: 133 VQLMVFNPAGERGEGEELVLINPKVYKYSKKLVLFDEGCLSFPGIYADVERPTSVKIDAR 192

Query: 710 DAKGKKFILNLKEFHGRIFQHEYDHLEGILFFERMDPKTLEIVRPSLQDLEQKYESETGM 889
           D  G KF ++LK    R+FQHE+DHL+GILFFERM  + LE +RP LQ LE+KYE+ TG+
Sbjct: 193 DITGAKFSVHLKGLPARVFQHEFDHLQGILFFERMTEEVLESIRPGLQALEKKYETLTGL 252


>ref|XP_004158319.1| PREDICTED: peptide deformylase 1B, chloroplastic-like [Cucumis
           sativus]
          Length = 273

 Score =  246 bits (627), Expect = 1e-62
 Identities = 118/190 (62%), Positives = 148/190 (77%), Gaps = 1/190 (0%)
 Frame = +2

Query: 323 SVADKDIAVS-DLHYDLPLKIVKYPDPRLRAKNMRVKCFDESLQVLVKAMFDIMYRTDGC 499
           S  + D+A S DL ++ PLKIV+YPDP LRAKN R+  FD++L+ LV+ MFD+MY+TDG 
Sbjct: 64  SAKEDDVASSVDLEFEAPLKIVEYPDPILRAKNKRIGSFDDNLKKLVQEMFDVMYKTDGI 123

Query: 500 GLSAPQVGVNVQLMVFNPAGEPGKGEEIVLVNPEIYKYSVKTDVLNEGCLSFPNIYGDIE 679
           GLSAPQVGVNVQLMVFN  GE G+GEEIVLVNP++Y+YS KT + NEGCLSFP IY D+E
Sbjct: 124 GLSAPQVGVNVQLMVFNSVGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFPMIYADVE 183

Query: 680 RPISVKIKAWDAKGKKFILNLKEFHGRIFQHEYDHLEGILFFERMDPKTLEIVRPSLQDL 859
           RP S+KI A D  G +F++NL     R+FQHE+DHL+G LFF+RM  + LE +RP LQ L
Sbjct: 184 RPESIKIDARDISGTRFMVNLSGLSARVFQHEFDHLQGTLFFDRMTDEVLETIRPQLQAL 243

Query: 860 EQKYESETGM 889
           E+KYE  TG+
Sbjct: 244 EKKYEDRTGL 253


>ref|XP_006288433.1| hypothetical protein CARUB_v10001691mg [Capsella rubella]
           gi|482557139|gb|EOA21331.1| hypothetical protein
           CARUB_v10001691mg [Capsella rubella]
          Length = 273

 Score =  244 bits (622), Expect = 4e-62
 Identities = 127/233 (54%), Positives = 158/233 (67%), Gaps = 10/233 (4%)
 Frame = +2

Query: 221 SFSRSRFPLLSTHGITSSVSKVFAKIGLKEELRKSVA----------DKDIAVSDLHYDL 370
           + SR    L + HG+  S     + +     L   V           D+  + SDL ++ 
Sbjct: 20  ALSRRDSTLTAGHGLLKSTGMFSSAVNRSTPLTSPVRAAVKRVPRKEDEVASASDLEFET 79

Query: 371 PLKIVKYPDPRLRAKNMRVKCFDESLQVLVKAMFDIMYRTDGCGLSAPQVGVNVQLMVFN 550
           PLKIV+YPDP LRAKN R+  FDE+L+ LV AMFDIMY+TDG GLSAPQVG+NVQLMVFN
Sbjct: 80  PLKIVEYPDPILRAKNKRIGVFDENLKNLVDAMFDIMYKTDGIGLSAPQVGLNVQLMVFN 139

Query: 551 PAGEPGKGEEIVLVNPEIYKYSVKTDVLNEGCLSFPNIYGDIERPISVKIKAWDAKGKKF 730
           PAGEPG+GEEIVLVNP+I KYS K    +EGCLSFP IY ++ RP SVKI A D  G KF
Sbjct: 140 PAGEPGEGEEIVLVNPKINKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGAKF 199

Query: 731 ILNLKEFHGRIFQHEYDHLEGILFFERMDPKTLEIVRPSLQDLEQKYESETGM 889
            ++L     RIFQHEYDHLEG+LFF+RM  + L+ +R  L+ LE+KYE +TG+
Sbjct: 200 SISLSRLPARIFQHEYDHLEGVLFFDRMTDEVLDSIREELEALEKKYEEKTGL 252


>ref|XP_002300047.2| hypothetical protein POPTR_0001s35190g [Populus trichocarpa]
           gi|566152890|ref|XP_006369926.1| hypothetical protein
           POPTR_0001s35190g [Populus trichocarpa]
           gi|566152892|ref|XP_006369927.1| hypothetical protein
           POPTR_0001s35190g [Populus trichocarpa]
           gi|550348928|gb|EEE84852.2| hypothetical protein
           POPTR_0001s35190g [Populus trichocarpa]
           gi|550348929|gb|ERP66495.1| hypothetical protein
           POPTR_0001s35190g [Populus trichocarpa]
           gi|550348930|gb|ERP66496.1| hypothetical protein
           POPTR_0001s35190g [Populus trichocarpa]
          Length = 268

 Score =  243 bits (620), Expect = 7e-62
 Identities = 116/185 (62%), Positives = 144/185 (77%)
 Frame = +2

Query: 332 DKDIAVSDLHYDLPLKIVKYPDPRLRAKNMRVKCFDESLQVLVKAMFDIMYRTDGCGLSA 511
           D+  A SDL ++ PLKIV+YPDP LRAKN R+  FD++L+ LV  MFD+MY+TDG GLSA
Sbjct: 62  DQVAATSDLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVDEMFDVMYKTDGIGLSA 121

Query: 512 PQVGVNVQLMVFNPAGEPGKGEEIVLVNPEIYKYSVKTDVLNEGCLSFPNIYGDIERPIS 691
           PQVG+NVQLMVFNPA E G+G+EIVLVNP + KYS KT + NEGCLSFP IY D++RP S
Sbjct: 122 PQVGINVQLMVFNPADEHGEGDEIVLVNPRVNKYSKKTVLFNEGCLSFPGIYADVKRPES 181

Query: 692 VKIKAWDAKGKKFILNLKEFHGRIFQHEYDHLEGILFFERMDPKTLEIVRPSLQDLEQKY 871
           VKI A D  G +F +NL     R+FQHE+DHL+GILFF+RM  + L+ +RP LQ LE+KY
Sbjct: 182 VKIDARDINGARFTVNLSGLPARVFQHEFDHLQGILFFDRMTEEVLDSIRPGLQALEKKY 241

Query: 872 ESETG 886
           E +TG
Sbjct: 242 EDKTG 246


>ref|XP_002873683.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297319520|gb|EFH49942.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 273

 Score =  243 bits (619), Expect = 9e-62
 Identities = 136/262 (51%), Positives = 172/262 (65%), Gaps = 3/262 (1%)
 Frame = +2

Query: 113 MALMNLASAKPPSLLLNSFTPFISSSNTLNFHRRNISFSRSRFPLLSTHGITSSVSKVFA 292
           MA+ N     PP  L   F P +S        RR  + S     L ST    S+ ++   
Sbjct: 1   MAVCNCFLQAPP--LSRLFLPVLS--------RRATTLSAGYGRLKSTVMFCSTGNRTSP 50

Query: 293 KIGLKEELRKSVADKDIAV---SDLHYDLPLKIVKYPDPRLRAKNMRVKCFDESLQVLVK 463
            I       K V+ KD+ V   SDL ++ PL+IV+YPDP LRAKN R+  FD++L+ LV 
Sbjct: 51  LISPVRAEVKRVSRKDVEVASASDLQFETPLRIVEYPDPILRAKNKRIGVFDQNLKNLVD 110

Query: 464 AMFDIMYRTDGCGLSAPQVGVNVQLMVFNPAGEPGKGEEIVLVNPEIYKYSVKTDVLNEG 643
           AMFD+MY+TDG GLSAPQVG+NVQLMVFNPAGEPG+GEEIVLVNP I KYS K    +EG
Sbjct: 111 AMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPGEGEEIVLVNPIIKKYSDKLVPFDEG 170

Query: 644 CLSFPNIYGDIERPISVKIKAWDAKGKKFILNLKEFHGRIFQHEYDHLEGILFFERMDPK 823
           CLSFP IY ++ RP SVKI A D  G++F ++L     RIFQHEYDHLEG+LFF+RM  +
Sbjct: 171 CLSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQ 230

Query: 824 TLEIVRPSLQDLEQKYESETGM 889
            L+ +R  L+ LE+KYE +TG+
Sbjct: 231 VLDSIREELEALEKKYEEKTGL 252


>gb|AAG33980.1|AF269165_1 peptide deformylase [Arabidopsis thaliana]
          Length = 273

 Score =  242 bits (618), Expect = 1e-61
 Identities = 121/212 (57%), Positives = 156/212 (73%)
 Frame = +2

Query: 254 THGITSSVSKVFAKIGLKEELRKSVADKDIAVSDLHYDLPLKIVKYPDPRLRAKNMRVKC 433
           T  +TSSV     ++  K+       DK  + +D+ ++ PLKIV+YPDP LRAKN R+  
Sbjct: 48  TSPLTSSVRAEVKRVSRKD-------DKVASATDVQFETPLKIVEYPDPILRAKNKRIDI 100

Query: 434 FDESLQVLVKAMFDIMYRTDGCGLSAPQVGVNVQLMVFNPAGEPGKGEEIVLVNPEIYKY 613
           FDE+L+ LV AMFD+MY+TDG GLSAPQVG+NVQLMVFNPAGEPG+G+EIVLVNP+I KY
Sbjct: 101 FDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKY 160

Query: 614 SVKTDVLNEGCLSFPNIYGDIERPISVKIKAWDAKGKKFILNLKEFHGRIFQHEYDHLEG 793
           S K    +EGCLSFP IY ++ RP SVKI A D  G++F ++L     RIFQHEYDHLEG
Sbjct: 161 SDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSISLSSLPARIFQHEYDHLEG 220

Query: 794 ILFFERMDPKTLEIVRPSLQDLEQKYESETGM 889
           +LFF+RM  + L+ +R  L+ LE+KYE +TG+
Sbjct: 221 VLFFDRMTDQVLDSIREELEALEKKYEEKTGL 252


>ref|NP_196970.1| peptide deformylase 1B [Arabidopsis thaliana]
           gi|30684999|ref|NP_850821.1| peptide deformylase 1B
           [Arabidopsis thaliana]
           gi|39932734|sp|Q9FUZ2.2|DEF1B_ARATH RecName:
           Full=Peptide deformylase 1B,
           chloroplastic/mitochondrial; Short=AtDEF2;
           Short=AtPDF1B; Short=PDF 1B; AltName: Full=Polypeptide
           deformylase; Flags: Precursor gi|7573315|emb|CAB87633.1|
           putative protein [Arabidopsis thaliana]
           gi|15292891|gb|AAK92816.1| unknown protein [Arabidopsis
           thaliana] gi|20465677|gb|AAM20307.1| unknown protein
           [Arabidopsis thaliana] gi|332004676|gb|AED92059.1|
           peptide deformylase 1B [Arabidopsis thaliana]
           gi|332004677|gb|AED92060.1| peptide deformylase 1B
           [Arabidopsis thaliana]
          Length = 273

 Score =  242 bits (618), Expect = 1e-61
 Identities = 121/212 (57%), Positives = 156/212 (73%)
 Frame = +2

Query: 254 THGITSSVSKVFAKIGLKEELRKSVADKDIAVSDLHYDLPLKIVKYPDPRLRAKNMRVKC 433
           T  +TSSV     ++  K+       DK  + +D+ ++ PLKIV+YPDP LRAKN R+  
Sbjct: 48  TSPLTSSVRAEVKRVSRKD-------DKVASATDVQFETPLKIVEYPDPILRAKNKRIDI 100

Query: 434 FDESLQVLVKAMFDIMYRTDGCGLSAPQVGVNVQLMVFNPAGEPGKGEEIVLVNPEIYKY 613
           FDE+L+ LV AMFD+MY+TDG GLSAPQVG+NVQLMVFNPAGEPG+G+EIVLVNP+I KY
Sbjct: 101 FDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKY 160

Query: 614 SVKTDVLNEGCLSFPNIYGDIERPISVKIKAWDAKGKKFILNLKEFHGRIFQHEYDHLEG 793
           S K    +EGCLSFP IY ++ RP SVKI A D  G++F ++L     RIFQHEYDHLEG
Sbjct: 161 SDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLEG 220

Query: 794 ILFFERMDPKTLEIVRPSLQDLEQKYESETGM 889
           +LFF+RM  + L+ +R  L+ LE+KYE +TG+
Sbjct: 221 VLFFDRMTDQVLDSIREELEALEKKYEEKTGL 252


>ref|XP_002276964.1| PREDICTED: peptide deformylase 1B, chloroplastic [Vitis vinifera]
           gi|296087647|emb|CBI34903.3| unnamed protein product
           [Vitis vinifera]
          Length = 275

 Score =  242 bits (617), Expect = 2e-61
 Identities = 137/268 (51%), Positives = 172/268 (64%), Gaps = 13/268 (4%)
 Frame = +2

Query: 122 MNLASAKPPSLLLNSFTPFIS-----SSNTLNFHRRNI------SFSRSRFPLLSTHGIT 268
           M  AS    S L N+F P +      S++T + HR         S +R R PL+      
Sbjct: 1   MAFASCLHSSYLSNTFLPILRHRSALSTSTSHLHRFCSPSRFFSSANRFRLPLMQV---- 56

Query: 269 SSVSKVFAKIGL--KEELRKSVADKDIAVSDLHYDLPLKIVKYPDPRLRAKNMRVKCFDE 442
               +V AK G   KEE+  S AD       L ++ PLKIV+YPDP LRAKN  +  FD+
Sbjct: 57  ----QVQAKRGFSFKEEVIASPAD-------LSFEAPLKIVEYPDPILRAKNKLISTFDD 105

Query: 443 SLQVLVKAMFDIMYRTDGCGLSAPQVGVNVQLMVFNPAGEPGKGEEIVLVNPEIYKYSVK 622
           +L+ LV  MFD+MY+TDG GLSAPQVG+NVQLMVFNP GE G+GEEIVLVNP + KYS K
Sbjct: 106 NLKKLVDEMFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSKK 165

Query: 623 TDVLNEGCLSFPNIYGDIERPISVKIKAWDAKGKKFILNLKEFHGRIFQHEYDHLEGILF 802
             + NEGCLSFP IY D+ERP SVKI A D  G +F++NL     R+FQHE+DHL+G LF
Sbjct: 166 IVLFNEGCLSFPGIYADVERPESVKIDARDITGARFMINLSGLPARVFQHEFDHLQGTLF 225

Query: 803 FERMDPKTLEIVRPSLQDLEQKYESETG 886
           F+RM  + L+ +  +LQDLE+KYE  TG
Sbjct: 226 FDRMTEEVLDSIHANLQDLERKYEDRTG 253


>gb|AAM62644.1| Formylmethionine deformylase [Arabidopsis thaliana]
          Length = 273

 Score =  241 bits (616), Expect = 2e-61
 Identities = 120/209 (57%), Positives = 155/209 (74%)
 Frame = +2

Query: 263 ITSSVSKVFAKIGLKEELRKSVADKDIAVSDLHYDLPLKIVKYPDPRLRAKNMRVKCFDE 442
           +TSSV     ++  K+       DK  + +D+ ++ PLKIV+YPDP LRAKN R+  FDE
Sbjct: 51  LTSSVRAEVKRVSRKD-------DKVASATDVQFETPLKIVEYPDPILRAKNKRIDIFDE 103

Query: 443 SLQVLVKAMFDIMYRTDGCGLSAPQVGVNVQLMVFNPAGEPGKGEEIVLVNPEIYKYSVK 622
           +L+ LV AMFD+MY+TDG GLSAPQVG+NVQLMVFNPAGEPG+G+EIVLVNP+I KYS K
Sbjct: 104 NLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDK 163

Query: 623 TDVLNEGCLSFPNIYGDIERPISVKIKAWDAKGKKFILNLKEFHGRIFQHEYDHLEGILF 802
               +EGCLSFP IY ++ RP SVKI A D  G++F ++L     RIFQHEYDHLEG+LF
Sbjct: 164 LVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLF 223

Query: 803 FERMDPKTLEIVRPSLQDLEQKYESETGM 889
           F+RM  + L+ +R  L+ LE+KYE +TG+
Sbjct: 224 FDRMTDQVLDSIREELEALEKKYEEKTGL 252


>ref|XP_004306350.1| PREDICTED: peptide deformylase 1B, chloroplastic-like [Fragaria
           vesca subsp. vesca]
          Length = 275

 Score =  241 bits (615), Expect = 3e-61
 Identities = 124/229 (54%), Positives = 161/229 (70%)
 Frame = +2

Query: 203 FHRRNISFSRSRFPLLSTHGITSSVSKVFAKIGLKEELRKSVADKDIAVSDLHYDLPLKI 382
           FHR   +FS +  PL + +  T+  ++      LKE       D+  + +D+ ++ PL+I
Sbjct: 32  FHRF-CTFSSADRPLSTANRFTAVRAQAKRGFSLKE-------DQVASAADVEFETPLEI 83

Query: 383 VKYPDPRLRAKNMRVKCFDESLQVLVKAMFDIMYRTDGCGLSAPQVGVNVQLMVFNPAGE 562
           V+YPDP LRAKN R+  FD++L+ LV+ MFDIMYRTDG GLSAPQVG+NVQLMVFNP GE
Sbjct: 84  VEYPDPILRAKNKRLDTFDDNLKKLVEEMFDIMYRTDGIGLSAPQVGINVQLMVFNPVGE 143

Query: 563 PGKGEEIVLVNPEIYKYSVKTDVLNEGCLSFPNIYGDIERPISVKIKAWDAKGKKFILNL 742
            G+GEEIVLVNP + +YS KT + NEGCLSFP IY D++RP SVKI A D  G +F +NL
Sbjct: 144 RGEGEEIVLVNPRVSRYSQKTRLFNEGCLSFPGIYADVQRPESVKIDARDISGARFTVNL 203

Query: 743 KEFHGRIFQHEYDHLEGILFFERMDPKTLEIVRPSLQDLEQKYESETGM 889
                R+FQHE+DHL+GILFF+RM    LE +   LQ LE+KYE +TG+
Sbjct: 204 SGLPARVFQHEFDHLQGILFFDRMTEGVLESISEQLQALEKKYEDKTGL 252


>gb|EOY02424.1| Polypeptide deformylase, putative isoform 1 [Theobroma cacao]
           gi|508710528|gb|EOY02425.1| Polypeptide deformylase,
           putative isoform 1 [Theobroma cacao]
           gi|508710529|gb|EOY02426.1| Polypeptide deformylase,
           putative isoform 1 [Theobroma cacao]
           gi|508710530|gb|EOY02427.1| Polypeptide deformylase,
           putative isoform 1 [Theobroma cacao]
          Length = 278

 Score =  241 bits (614), Expect = 3e-61
 Identities = 126/237 (53%), Positives = 163/237 (68%), Gaps = 4/237 (1%)
 Frame = +2

Query: 191 NTLNFHRRNISFSRSRFPLLSTHGITSSVSKVFAKIG-LKEELRKSVADKDIAVS---DL 358
           +T   HR N   S +RF        TSS+++   ++  +  + ++    KD  V+   DL
Sbjct: 29  STAFLHRLNRFTSPARF--------TSSLNQTNPQLTPVHAQAKRGFLSKDDEVASMEDL 80

Query: 359 HYDLPLKIVKYPDPRLRAKNMRVKCFDESLQVLVKAMFDIMYRTDGCGLSAPQVGVNVQL 538
            +D PLKIV+YPDP LR +N R+  FDE+L+ LV  MFD+MY+TDG GLSAPQVGVNVQL
Sbjct: 81  RFDSPLKIVEYPDPILRKRNKRIDTFDENLKKLVDEMFDVMYKTDGIGLSAPQVGVNVQL 140

Query: 539 MVFNPAGEPGKGEEIVLVNPEIYKYSVKTDVLNEGCLSFPNIYGDIERPISVKIKAWDAK 718
           MVFNP GE G+G+EIVLVNP + KYS KT + NEGCLSFP IY D+ERP S+KI A D  
Sbjct: 141 MVFNPVGERGEGQEIVLVNPRVNKYSKKTVLFNEGCLSFPRIYADVERPESIKIDARDVN 200

Query: 719 GKKFILNLKEFHGRIFQHEYDHLEGILFFERMDPKTLEIVRPSLQDLEQKYESETGM 889
           G +F +NL     RIFQHE+DHL+GILFF+RM  + L+ +R  L+ LE+KYE  TG+
Sbjct: 201 GARFTVNLSGLRARIFQHEFDHLQGILFFDRMTGEVLDSIRAQLEALEKKYEDTTGL 257


>pdb|3CPM|A Chain A, Plant Peptide Deformylase Pdf1b Crystal Structure
          Length = 193

 Score =  239 bits (611), Expect = 8e-61
 Identities = 115/186 (61%), Positives = 146/186 (78%)
 Frame = +2

Query: 332 DKDIAVSDLHYDLPLKIVKYPDPRLRAKNMRVKCFDESLQVLVKAMFDIMYRTDGCGLSA 511
           DK  + +D+ ++ PLKIV+YPDP LRAKN R+  FDE+L+ LV AMFD+MY+TDG GLSA
Sbjct: 3   DKVASATDVQFETPLKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSA 62

Query: 512 PQVGVNVQLMVFNPAGEPGKGEEIVLVNPEIYKYSVKTDVLNEGCLSFPNIYGDIERPIS 691
           PQVG+NVQLMVFNPAGEPG+G+EIVLVNP+I KYS K    +EGCLSFP IY ++ RP S
Sbjct: 63  PQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQS 122

Query: 692 VKIKAWDAKGKKFILNLKEFHGRIFQHEYDHLEGILFFERMDPKTLEIVRPSLQDLEQKY 871
           VKI A D  G++F ++L     RIFQHEYDHLEG+LFF+RM  + L+ +R  L+ LE+KY
Sbjct: 123 VKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKY 182

Query: 872 ESETGM 889
           E +TG+
Sbjct: 183 EEKTGL 188


>ref|XP_006369928.1| hypothetical protein POPTR_0001s35190g [Populus trichocarpa]
           gi|550348931|gb|ERP66497.1| hypothetical protein
           POPTR_0001s35190g [Populus trichocarpa]
          Length = 269

 Score =  239 bits (609), Expect = 1e-60
 Identities = 113/178 (63%), Positives = 140/178 (78%)
 Frame = +2

Query: 353 DLHYDLPLKIVKYPDPRLRAKNMRVKCFDESLQVLVKAMFDIMYRTDGCGLSAPQVGVNV 532
           DL ++ PLKIV+YPDP LRAKN R+  FD++L+ LV  MFD+MY+TDG GLSAPQVG+NV
Sbjct: 70  DLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVDEMFDVMYKTDGIGLSAPQVGINV 129

Query: 533 QLMVFNPAGEPGKGEEIVLVNPEIYKYSVKTDVLNEGCLSFPNIYGDIERPISVKIKAWD 712
           QLMVFNPA E G+G+EIVLVNP + KYS KT + NEGCLSFP IY D++RP SVKI A D
Sbjct: 130 QLMVFNPADEHGEGDEIVLVNPRVNKYSKKTVLFNEGCLSFPGIYADVKRPESVKIDARD 189

Query: 713 AKGKKFILNLKEFHGRIFQHEYDHLEGILFFERMDPKTLEIVRPSLQDLEQKYESETG 886
             G +F +NL     R+FQHE+DHL+GILFF+RM  + L+ +RP LQ LE+KYE +TG
Sbjct: 190 INGARFTVNLSGLPARVFQHEFDHLQGILFFDRMTEEVLDSIRPGLQALEKKYEDKTG 247


>gb|EMJ17002.1| hypothetical protein PRUPE_ppa009947mg [Prunus persica]
          Length = 271

 Score =  238 bits (608), Expect = 2e-60
 Identities = 116/190 (61%), Positives = 144/190 (75%), Gaps = 1/190 (0%)
 Frame = +2

Query: 323 SVADKDIAVS-DLHYDLPLKIVKYPDPRLRAKNMRVKCFDESLQVLVKAMFDIMYRTDGC 499
           SV + ++A + D+ ++ PLKIV+YPDP LRAKN R+  FDE+L++LV  MFDIMY+TDG 
Sbjct: 61  SVKEDEVATAADVEFETPLKIVEYPDPILRAKNKRIDSFDENLKILVDEMFDIMYKTDGI 120

Query: 500 GLSAPQVGVNVQLMVFNPAGEPGKGEEIVLVNPEIYKYSVKTDVLNEGCLSFPNIYGDIE 679
           GLSAPQVG+NVQLMVFNP GE G+GEEIVLVNP + +YS KT   NEGCLSFP IY D+ 
Sbjct: 121 GLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVSRYSQKTRPFNEGCLSFPGIYADVV 180

Query: 680 RPISVKIKAWDAKGKKFILNLKEFHGRIFQHEYDHLEGILFFERMDPKTLEIVRPSLQDL 859
           RP SVKI A D  G +F +NL     R+FQHE+DHL+GILFF+RM    LE +   LQ L
Sbjct: 181 RPESVKIDARDINGARFTVNLSGLPARVFQHEFDHLQGILFFDRMSEGVLETICAQLQTL 240

Query: 860 EQKYESETGM 889
           E+KYE +TG+
Sbjct: 241 EKKYEDKTGL 250


>ref|XP_002521451.1| polypeptide deformylase, putative [Ricinus communis]
           gi|223539350|gb|EEF40941.1| polypeptide deformylase,
           putative [Ricinus communis]
          Length = 282

 Score =  238 bits (606), Expect = 3e-60
 Identities = 123/231 (53%), Positives = 161/231 (69%), Gaps = 3/231 (1%)
 Frame = +2

Query: 203 FHRRNISFSRSRFPLLSTHGITSSVSKVFAKIGLKEELRKSVADKDIAVS---DLHYDLP 373
           F +   S +  RF  LS+    SS++K    I ++ + ++S + K+  ++   DL ++ P
Sbjct: 31  FRQTGFSCNNFRFNQLSSTARFSSIAKP-PSIPVRAQAKRSFSFKEEEIATPADLCFEEP 89

Query: 374 LKIVKYPDPRLRAKNMRVKCFDESLQVLVKAMFDIMYRTDGCGLSAPQVGVNVQLMVFNP 553
           LKIV+YPDP LR KN R+  FD++L+ LV  MFD+MY+TDG GLSAPQVG+NVQLMVFNP
Sbjct: 90  LKIVEYPDPILRRKNKRIDTFDDNLKKLVDEMFDVMYKTDGIGLSAPQVGINVQLMVFNP 149

Query: 554 AGEPGKGEEIVLVNPEIYKYSVKTDVLNEGCLSFPNIYGDIERPISVKIKAWDAKGKKFI 733
            GE G+GEEIVL+NP + KYS K    NEGCLSFP IY D+ RP SVKI A D  G +F 
Sbjct: 150 VGERGEGEEIVLINPRLNKYSKKIVPFNEGCLSFPGIYADVLRPESVKIDARDINGARFT 209

Query: 734 LNLKEFHGRIFQHEYDHLEGILFFERMDPKTLEIVRPSLQDLEQKYESETG 886
           +NL     R+FQHEYDHLEGILFF+RM  + L+ +R  LQ LE+K+E +TG
Sbjct: 210 VNLSGLPARVFQHEYDHLEGILFFDRMTDEVLDSIRAQLQALEKKFEDKTG 260


>ref|XP_006399979.1| hypothetical protein EUTSA_v10014367mg [Eutrema salsugineum]
           gi|557101069|gb|ESQ41432.1| hypothetical protein
           EUTSA_v10014367mg [Eutrema salsugineum]
          Length = 273

 Score =  237 bits (605), Expect = 4e-60
 Identities = 120/195 (61%), Positives = 148/195 (75%), Gaps = 1/195 (0%)
 Frame = +2

Query: 308 EELRKSVADKDIA-VSDLHYDLPLKIVKYPDPRLRAKNMRVKCFDESLQVLVKAMFDIMY 484
           E  R S  D ++A VSDL ++ PLKIV+YPDP LRAKN R+  FDE+L+ LV AMF +MY
Sbjct: 58  EVKRLSRKDDEVASVSDLQFETPLKIVEYPDPILRAKNKRIGVFDENLKNLVDAMFHVMY 117

Query: 485 RTDGCGLSAPQVGVNVQLMVFNPAGEPGKGEEIVLVNPEIYKYSVKTDVLNEGCLSFPNI 664
           +TDG GLSAPQVG+NVQLMVFNPAGE G+GEEIVLVNP+I KYS K    +EGCLSFP I
Sbjct: 118 KTDGVGLSAPQVGLNVQLMVFNPAGERGEGEEIVLVNPKINKYSDKLVPFSEGCLSFPGI 177

Query: 665 YGDIERPISVKIKAWDAKGKKFILNLKEFHGRIFQHEYDHLEGILFFERMDPKTLEIVRP 844
           Y D+ RP SVKI A D  G +F ++L     RIFQHEYDHLEG+LFF++M  + L+ +R 
Sbjct: 178 YADVVRPQSVKIDARDITGARFSISLSRLPARIFQHEYDHLEGVLFFDKMTDQVLDSIRE 237

Query: 845 SLQDLEQKYESETGM 889
            L+ LE+KYE +TG+
Sbjct: 238 ELEALEKKYEEKTGL 252


>gb|EOY02428.1| Polypeptide deformylase, putative isoform 5 [Theobroma cacao]
          Length = 279

 Score =  236 bits (602), Expect = 8e-60
 Identities = 126/238 (52%), Positives = 163/238 (68%), Gaps = 5/238 (2%)
 Frame = +2

Query: 191 NTLNFHRRNISFSRSRFPLLSTHGITSSVSKVFAKIG-LKEELRKSVADKDIAVS---DL 358
           +T   HR N   S +RF        TSS+++   ++  +  + ++    KD  V+   DL
Sbjct: 29  STAFLHRLNRFTSPARF--------TSSLNQTNPQLTPVHAQAKRGFLSKDDEVASMEDL 80

Query: 359 HYDLPLKIVKYPDPRLRAKNMRVKCFDESLQVLVKAMFDIMYRTDGCGLSAPQVGVNVQL 538
            +D PLKIV+YPDP LR +N R+  FDE+L+ LV  MFD+MY+TDG GLSAPQVGVNVQL
Sbjct: 81  RFDSPLKIVEYPDPILRKRNKRIDTFDENLKKLVDEMFDVMYKTDGIGLSAPQVGVNVQL 140

Query: 539 MVFNPAGEPGKGEEIVLVNPEIYKYSVKTDVLNEGCLSFPNIYGDIERPISVKIKAWDAK 718
           MVFNP GE G+G+EIVLVNP + KYS KT + NEGCLSFP IY D+ERP S+KI A D  
Sbjct: 141 MVFNPVGERGEGQEIVLVNPRVNKYSKKTVLFNEGCLSFPRIYADVERPESIKIDARDVN 200

Query: 719 GKKFILNLKEFHGRIFQHEYDHL-EGILFFERMDPKTLEIVRPSLQDLEQKYESETGM 889
           G +F +NL     RIFQHE+DHL +GILFF+RM  + L+ +R  L+ LE+KYE  TG+
Sbjct: 201 GARFTVNLSGLRARIFQHEFDHLQQGILFFDRMTGEVLDSIRAQLEALEKKYEDTTGL 258


>gb|AFW83381.1| hypothetical protein ZEAMMB73_684024 [Zea mays]
           gi|413950733|gb|AFW83382.1| hypothetical protein
           ZEAMMB73_684024 [Zea mays]
          Length = 264

 Score =  232 bits (592), Expect = 1e-58
 Identities = 117/201 (58%), Positives = 145/201 (72%), Gaps = 1/201 (0%)
 Frame = +2

Query: 290 AKIGLKEELRKSVADKDIAV-SDLHYDLPLKIVKYPDPRLRAKNMRVKCFDESLQVLVKA 466
           A+ GL      +  D+D A  SDL ++ PL++VKYPDP LRA+N R+  FD++L+ L   
Sbjct: 44  ARRGLGSSTANAQLDEDFATASDLRFESPLEVVKYPDPVLRARNKRINTFDDNLRALADE 103

Query: 467 MFDIMYRTDGCGLSAPQVGVNVQLMVFNPAGEPGKGEEIVLVNPEIYKYSVKTDVLNEGC 646
           MFD+MY+TDG GLSAPQVGVNVQLMVFNPAG  G+GEEIVLVNP IYK + +  V  EGC
Sbjct: 104 MFDVMYKTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVIYKSAKRLLVFEEGC 163

Query: 647 LSFPNIYGDIERPISVKIKAWDAKGKKFILNLKEFHGRIFQHEYDHLEGILFFERMDPKT 826
           LSFP IYG++ RP SVKI+A D  G K  + L   H R+FQHE+DHL GILFF+RM    
Sbjct: 164 LSFPGIYGNVVRPESVKIEAQDVTGAKIKVKLSGIHARVFQHEFDHLLGILFFDRMTIDV 223

Query: 827 LEIVRPSLQDLEQKYESETGM 889
           LE VR  L++LE+KYE  TG+
Sbjct: 224 LETVREELKNLEKKYEEITGL 244


>ref|XP_006470303.1| PREDICTED: peptide deformylase 1B, chloroplastic-like isoform X1
           [Citrus sinensis] gi|568832146|ref|XP_006470304.1|
           PREDICTED: peptide deformylase 1B, chloroplastic-like
           isoform X2 [Citrus sinensis]
           gi|568832148|ref|XP_006470305.1| PREDICTED: peptide
           deformylase 1B, chloroplastic-like isoform X3 [Citrus
           sinensis]
          Length = 282

 Score =  230 bits (587), Expect = 5e-58
 Identities = 118/218 (54%), Positives = 153/218 (70%), Gaps = 3/218 (1%)
 Frame = +2

Query: 245 LLSTHGITSSVSKVFAKIGLKEELRKSVADKDIAVS---DLHYDLPLKIVKYPDPRLRAK 415
           L ST  + SS ++    +  + + R   + K+  V+   DL ++ PLKIV+YPDP LRAK
Sbjct: 44  LYSTARLFSSPNRTNLPLLTQAKRRYGFSTKEDPVASPADLRFERPLKIVEYPDPILRAK 103

Query: 416 NMRVKCFDESLQVLVKAMFDIMYRTDGCGLSAPQVGVNVQLMVFNPAGEPGKGEEIVLVN 595
           N R+  FD++L+ LV  MFD MY+TDG GLSAPQVG+NVQLMVFNP GE G+GEEIVLVN
Sbjct: 104 NKRIDTFDDNLKKLVDEMFDFMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVN 163

Query: 596 PEIYKYSVKTDVLNEGCLSFPNIYGDIERPISVKIKAWDAKGKKFILNLKEFHGRIFQHE 775
           P + KYS K     EGCLSFP I+ D+ERP SVKI A D  G +F ++L +   R+FQHE
Sbjct: 164 PRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHE 223

Query: 776 YDHLEGILFFERMDPKTLEIVRPSLQDLEQKYESETGM 889
           +DHL+GILFFERM    L+ +R  L+ LE+KYE +TG+
Sbjct: 224 FDHLQGILFFERMTDDVLDSIREQLEALEKKYEDKTGL 261