BLASTX nr result
ID: Ephedra25_contig00005395
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra25_contig00005395
(659 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006645957.1| PREDICTED: probable RNA-dependent RNA polyme... 61 3e-07
gb|EMT17690.1| hypothetical protein F775_12225 [Aegilops tauschii] 59 1e-06
sp|Q8LHH9.1|SHL2_ORYSJ RecName: Full=Probable RNA-dependent RNA ... 59 1e-06
ref|XP_003561343.1| PREDICTED: probable RNA-dependent RNA polyme... 59 1e-06
gb|EEE54718.1| hypothetical protein OsJ_02054 [Oryza sativa Japo... 59 1e-06
ref|XP_004968861.1| PREDICTED: probable RNA-dependent RNA polyme... 59 1e-06
tpg|DAA54873.1| TPA: hypothetical protein ZEAMMB73_768916 [Zea m... 59 1e-06
gb|AFK33477.1| unknown [Lotus japonicus] 59 1e-06
ref|XP_002457941.1| hypothetical protein SORBIDRAFT_03g022880 [S... 58 3e-06
ref|XP_004501325.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 57 6e-06
ref|XP_004501324.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 57 6e-06
>ref|XP_006645957.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like [Oryza
brachyantha]
Length = 1105
Score = 61.2 bits (147), Expect = 3e-07
Identities = 28/42 (66%), Positives = 33/42 (78%)
Frame = +3
Query: 372 ANDENFTVEEIR*WMGRFYNRNVAKHATRMGRCFYSTYQSVS 497
A D N TVE IR WMGRF ++NVAKHA RMG+CF STY +V+
Sbjct: 436 AEDRNTTVEGIRKWMGRFTSKNVAKHAARMGQCFSSTYATVT 477
>gb|EMT17690.1| hypothetical protein F775_12225 [Aegilops tauschii]
Length = 946
Score = 59.3 bits (142), Expect = 1e-06
Identities = 28/42 (66%), Positives = 32/42 (76%)
Frame = +3
Query: 372 ANDENFTVEEIR*WMGRFYNRNVAKHATRMGRCFYSTYQSVS 497
A D N TVE IR WMGRF RNVAKHA RMG+CF S+Y +V+
Sbjct: 309 AEDGNTTVESIRQWMGRFTCRNVAKHAARMGQCFSSSYATVT 350
>sp|Q8LHH9.1|SHL2_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase SHL2; AltName:
Full=Protein SHOOTLESS 2 gi|21328146|dbj|BAC00725.1|
putative RNA-dependent RNA polymerase [Oryza sativa
Japonica Group] gi|157279691|dbj|BAF80151.1| SHOOTLESS2
[Oryza sativa Japonica Group]
Length = 1218
Score = 59.3 bits (142), Expect = 1e-06
Identities = 27/42 (64%), Positives = 32/42 (76%)
Frame = +3
Query: 372 ANDENFTVEEIR*WMGRFYNRNVAKHATRMGRCFYSTYQSVS 497
A D TVE IR WMGRF ++NVAKHA RMG+CF STY +V+
Sbjct: 548 AEDRKTTVEAIRKWMGRFTSKNVAKHAARMGQCFSSTYATVT 589
>ref|XP_003561343.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like
[Brachypodium distachyon]
Length = 1208
Score = 59.3 bits (142), Expect = 1e-06
Identities = 27/41 (65%), Positives = 31/41 (75%)
Frame = +3
Query: 372 ANDENFTVEEIR*WMGRFYNRNVAKHATRMGRCFYSTYQSV 494
A D TVE IR WMGRF ++NVAKHA RMG+CF STY +V
Sbjct: 540 AEDSKTTVESIRKWMGRFTSKNVAKHAARMGQCFSSTYATV 580
>gb|EEE54718.1| hypothetical protein OsJ_02054 [Oryza sativa Japonica Group]
Length = 1571
Score = 59.3 bits (142), Expect = 1e-06
Identities = 27/42 (64%), Positives = 32/42 (76%)
Frame = +3
Query: 372 ANDENFTVEEIR*WMGRFYNRNVAKHATRMGRCFYSTYQSVS 497
A D TVE IR WMGRF ++NVAKHA RMG+CF STY +V+
Sbjct: 936 AEDRKTTVEAIRKWMGRFTSKNVAKHAARMGQCFSSTYATVT 977
>ref|XP_004968861.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like [Setaria
italica]
Length = 1211
Score = 58.9 bits (141), Expect = 1e-06
Identities = 27/41 (65%), Positives = 31/41 (75%)
Frame = +3
Query: 372 ANDENFTVEEIR*WMGRFYNRNVAKHATRMGRCFYSTYQSV 494
A D TVE IR WMGRF ++NVAKHA RMG+CF STY +V
Sbjct: 541 AEDRTRTVESIRKWMGRFTSKNVAKHAARMGQCFSSTYATV 581
>tpg|DAA54873.1| TPA: hypothetical protein ZEAMMB73_768916 [Zea mays]
Length = 937
Score = 58.9 bits (141), Expect = 1e-06
Identities = 27/41 (65%), Positives = 31/41 (75%)
Frame = +3
Query: 372 ANDENFTVEEIR*WMGRFYNRNVAKHATRMGRCFYSTYQSV 494
A D TVE IR WMGRF ++NVAKHA RMG+CF STY +V
Sbjct: 537 AEDRTTTVETIRKWMGRFTSKNVAKHAARMGQCFSSTYATV 577
>gb|AFK33477.1| unknown [Lotus japonicus]
Length = 352
Score = 58.9 bits (141), Expect = 1e-06
Identities = 27/38 (71%), Positives = 29/38 (76%)
Frame = +1
Query: 76 VYCSCCTIQQCVFIHSVLEHTDVVVLLDNEAIYGICRR 189
V+ C IQQC HS+LEHTDV VLLDNEAIY ICRR
Sbjct: 80 VHLRCGAIQQCPLYHSLLEHTDVAVLLDNEAIYDICRR 117
>ref|XP_002457941.1| hypothetical protein SORBIDRAFT_03g022880 [Sorghum bicolor]
gi|241929916|gb|EES03061.1| hypothetical protein
SORBIDRAFT_03g022880 [Sorghum bicolor]
Length = 1207
Score = 57.8 bits (138), Expect = 3e-06
Identities = 27/41 (65%), Positives = 31/41 (75%)
Frame = +3
Query: 372 ANDENFTVEEIR*WMGRFYNRNVAKHATRMGRCFYSTYQSV 494
A D TVE IR WMGRF ++NVAKHA RMG+CF STY +V
Sbjct: 537 AEDRMRTVETIRKWMGRFTSKNVAKHAARMGQCFSSTYATV 577
>ref|XP_004501325.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X2 [Cicer
arietinum] gi|502132369|ref|XP_004501326.1| PREDICTED:
RNA-dependent RNA polymerase 6-like isoform X3 [Cicer
arietinum]
Length = 1201
Score = 56.6 bits (135), Expect = 6e-06
Identities = 26/41 (63%), Positives = 30/41 (73%)
Frame = +3
Query: 372 ANDENFTVEEIR*WMGRFYNRNVAKHATRMGRCFYSTYQSV 494
A D N T ++IR WMG+F RNVAK A RMG+CF STY SV
Sbjct: 525 AEDNNITCDDIRNWMGKFNQRNVAKCAARMGQCFSSTYASV 565
>ref|XP_004501324.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Cicer
arietinum]
Length = 1247
Score = 56.6 bits (135), Expect = 6e-06
Identities = 26/41 (63%), Positives = 30/41 (73%)
Frame = +3
Query: 372 ANDENFTVEEIR*WMGRFYNRNVAKHATRMGRCFYSTYQSV 494
A D N T ++IR WMG+F RNVAK A RMG+CF STY SV
Sbjct: 571 AEDNNITCDDIRNWMGKFNQRNVAKCAARMGQCFSSTYASV 611