BLASTX nr result
ID: Ephedra25_contig00004382
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra25_contig00004382
(455 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABK22069.1| unknown [Picea sitchensis] gi|116785114|gb|ABK236... 203 2e-50
gb|AFK46555.1| unknown [Lotus japonicus] 193 2e-47
gb|ESW03389.1| hypothetical protein PHAVU_011G010100g [Phaseolus... 193 2e-47
ref|XP_004251169.1| PREDICTED: DNA-directed RNA polymerase II su... 192 3e-47
ref|XP_004149719.1| PREDICTED: DNA-directed RNA polymerase II su... 192 5e-47
ref|XP_003534400.1| PREDICTED: DNA-directed RNA polymerases II, ... 191 1e-46
ref|XP_002973726.1| hypothetical protein SELMODRAFT_173532 [Sela... 191 1e-46
ref|NP_001240124.1| uncharacterized protein LOC100784219 [Glycin... 190 1e-46
ref|XP_004489205.1| PREDICTED: DNA-directed RNA polymerase II su... 189 3e-46
ref|XP_002285578.1| PREDICTED: DNA-directed RNA polymerase II su... 187 1e-45
gb|EMJ02624.1| hypothetical protein PRUPE_ppa013559mg [Prunus pe... 186 2e-45
ref|XP_001753081.1| predicted protein [Physcomitrella patens] gi... 186 2e-45
ref|XP_006292069.1| hypothetical protein CARUB_v10018264mg [Caps... 185 6e-45
gb|ACJ83854.1| unknown [Medicago truncatula] gi|388519401|gb|AFK... 185 6e-45
ref|XP_002313254.1| DNA-directed RNA polymerase II 13.6 kDa poly... 185 6e-45
ref|XP_004289695.1| PREDICTED: DNA-directed RNA polymerase II su... 184 8e-45
ref|XP_006403846.1| hypothetical protein EUTSA_v10010833mg [Eutr... 184 1e-44
ref|NP_190777.1| DNA-directed RNA polymerases II, IV and V subun... 184 1e-44
gb|EOX96660.1| DNA-directed RNA polymerase II subunit RPB11 [The... 183 2e-44
ref|XP_002877842.1| ATRPB13.6 [Arabidopsis lyrata subsp. lyrata]... 183 2e-44
>gb|ABK22069.1| unknown [Picea sitchensis] gi|116785114|gb|ABK23600.1| unknown
[Picea sitchensis] gi|116790373|gb|ABK25590.1| unknown
[Picea sitchensis] gi|224284720|gb|ACN40091.1| unknown
[Picea sitchensis]
Length = 120
Score = 203 bits (516), Expect = 2e-50
Identities = 95/115 (82%), Positives = 108/115 (93%)
Frame = -2
Query: 358 MNAPERFDKFVVPEGTKKVSYERDLKIMNAATFVIEREDHTIANITRMQLHRDPTVLFAG 179
MNAP+R++KFVVPEGTKKVSYERD+KIMNAATFVIEREDHTI NI RMQLHRDP VLFAG
Sbjct: 1 MNAPDRYEKFVVPEGTKKVSYERDMKIMNAATFVIEREDHTIGNIVRMQLHRDPNVLFAG 60
Query: 178 YRLPHPLQYKVQLRIQTTSQSSPMQAYNLAINDLDKELDHIKNAFQNEMARFQTD 14
Y+LPHPLQYK+ LRIQTTSQSSPMQAYNLAI+DLDKELDH+K +F++EM R Q++
Sbjct: 61 YKLPHPLQYKILLRIQTTSQSSPMQAYNLAIDDLDKELDHLKRSFEDEMVRLQSE 115
>gb|AFK46555.1| unknown [Lotus japonicus]
Length = 116
Score = 193 bits (491), Expect = 2e-47
Identities = 90/116 (77%), Positives = 103/116 (88%)
Frame = -2
Query: 358 MNAPERFDKFVVPEGTKKVSYERDLKIMNAATFVIEREDHTIANITRMQLHRDPTVLFAG 179
MNAP+R+++FVVPEGTKKVSYERD KI+NAA+F IEREDHTI NI RMQLHRDP VLFAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDPNVLFAG 60
Query: 178 YRLPHPLQYKVQLRIQTTSQSSPMQAYNLAINDLDKELDHIKNAFQNEMARFQTDY 11
Y+LPHPLQYK+ +RI T SQSSPMQAYN +INDLDKELDH+KNAF+ +M RF DY
Sbjct: 61 YKLPHPLQYKIIVRIHTASQSSPMQAYNQSINDLDKELDHLKNAFEADMLRFSRDY 116
>gb|ESW03389.1| hypothetical protein PHAVU_011G010100g [Phaseolus vulgaris]
Length = 116
Score = 193 bits (490), Expect = 2e-47
Identities = 89/116 (76%), Positives = 104/116 (89%)
Frame = -2
Query: 358 MNAPERFDKFVVPEGTKKVSYERDLKIMNAATFVIEREDHTIANITRMQLHRDPTVLFAG 179
MNAP+R+++FVVPEGTKKVSYERD KI+NAA+F IERE+HTI NI RMQLHRDP VLFAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDPNVLFAG 60
Query: 178 YRLPHPLQYKVQLRIQTTSQSSPMQAYNLAINDLDKELDHIKNAFQNEMARFQTDY 11
Y+LPHPLQYK+ +RI TTSQSSPMQAYN +INDLD+ELDH+KNAF+ EM +F DY
Sbjct: 61 YKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDRELDHLKNAFEAEMLKFSRDY 116
>ref|XP_004251169.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Solanum lycopersicum] gi|565346226|ref|XP_006340167.1|
PREDICTED: DNA-directed RNA polymerases II, IV and V
subunit 11-like [Solanum tuberosum]
Length = 116
Score = 192 bits (489), Expect = 3e-47
Identities = 90/116 (77%), Positives = 102/116 (87%)
Frame = -2
Query: 358 MNAPERFDKFVVPEGTKKVSYERDLKIMNAATFVIEREDHTIANITRMQLHRDPTVLFAG 179
MNAP+R+++FVVPEG KKVSYERD KIMNAATF +EREDHTI NI RMQLHRD VLFAG
Sbjct: 1 MNAPDRYERFVVPEGVKKVSYERDTKIMNAATFTVEREDHTIGNIVRMQLHRDDNVLFAG 60
Query: 178 YRLPHPLQYKVQLRIQTTSQSSPMQAYNLAINDLDKELDHIKNAFQNEMARFQTDY 11
Y+LPHPLQYK+ LRIQTTSQSSPMQAYN AINDLDKELDH+K+ F+ E+A+ DY
Sbjct: 61 YKLPHPLQYKILLRIQTTSQSSPMQAYNQAINDLDKELDHLKSQFEGELAKHTRDY 116
>ref|XP_004149719.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Cucumis sativus] gi|449516703|ref|XP_004165386.1|
PREDICTED: DNA-directed RNA polymerase II subunit
RPB11-like [Cucumis sativus]
Length = 116
Score = 192 bits (487), Expect = 5e-47
Identities = 90/116 (77%), Positives = 103/116 (88%)
Frame = -2
Query: 358 MNAPERFDKFVVPEGTKKVSYERDLKIMNAATFVIEREDHTIANITRMQLHRDPTVLFAG 179
MNAP+R+++FVVPEGTKKVSYERD KI+NAA+F IERE+HTI NI RMQLHRD VLFAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
Query: 178 YRLPHPLQYKVQLRIQTTSQSSPMQAYNLAINDLDKELDHIKNAFQNEMARFQTDY 11
Y+LPHPLQYK+ +RI TTSQSSPMQAYN AINDLDKELDH+KNAF+ E A+F DY
Sbjct: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 116
>ref|XP_003534400.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11
[Glycine max]
Length = 116
Score = 191 bits (484), Expect = 1e-46
Identities = 88/116 (75%), Positives = 104/116 (89%)
Frame = -2
Query: 358 MNAPERFDKFVVPEGTKKVSYERDLKIMNAATFVIEREDHTIANITRMQLHRDPTVLFAG 179
MNAP+R+++FVVPEGTKKVSYERD KI+NAA+F IERE+HTI NI RMQLHRDP VLFAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDPNVLFAG 60
Query: 178 YRLPHPLQYKVQLRIQTTSQSSPMQAYNLAINDLDKELDHIKNAFQNEMARFQTDY 11
Y+LPHPLQYK+ +RI TTSQSSPMQAYN +INDLD+ELDH+K+AF+ EM +F DY
Sbjct: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQSINDLDRELDHLKSAFEAEMLKFSRDY 116
>ref|XP_002973726.1| hypothetical protein SELMODRAFT_173532 [Selaginella moellendorffii]
gi|302788013|ref|XP_002975776.1| hypothetical protein
SELMODRAFT_150734 [Selaginella moellendorffii]
gi|300156777|gb|EFJ23405.1| hypothetical protein
SELMODRAFT_150734 [Selaginella moellendorffii]
gi|300158764|gb|EFJ25386.1| hypothetical protein
SELMODRAFT_173532 [Selaginella moellendorffii]
Length = 117
Score = 191 bits (484), Expect = 1e-46
Identities = 83/116 (71%), Positives = 107/116 (92%)
Frame = -2
Query: 358 MNAPERFDKFVVPEGTKKVSYERDLKIMNAATFVIEREDHTIANITRMQLHRDPTVLFAG 179
MNAP+R+++FVVPEGTKKV+YERD+K+MNA F I+REDHT+ N+ RMQLHRDP VLFAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVAYERDMKVMNAGAFTIQREDHTVGNVVRMQLHRDPNVLFAG 60
Query: 178 YRLPHPLQYKVQLRIQTTSQSSPMQAYNLAINDLDKELDHIKNAFQNEMARFQTDY 11
Y+LPHPLQYK+ +++QTTSQSSP+QAYNLA++DLDKEL+H+K AF++E+A+ QTDY
Sbjct: 61 YKLPHPLQYKIIVKVQTTSQSSPIQAYNLALSDLDKELEHLKRAFESEVAQRQTDY 116
>ref|NP_001240124.1| uncharacterized protein LOC100784219 [Glycine max]
gi|255626235|gb|ACU13462.1| unknown [Glycine max]
Length = 116
Score = 190 bits (483), Expect = 1e-46
Identities = 87/116 (75%), Positives = 104/116 (89%)
Frame = -2
Query: 358 MNAPERFDKFVVPEGTKKVSYERDLKIMNAATFVIEREDHTIANITRMQLHRDPTVLFAG 179
MNAP+R+++FVVPEGTKKVSYERD KI+NAA+F IERE+HTI NI RMQLHRDP VLFAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDPNVLFAG 60
Query: 178 YRLPHPLQYKVQLRIQTTSQSSPMQAYNLAINDLDKELDHIKNAFQNEMARFQTDY 11
Y+LPHPLQYK+ +RI TTSQSSPMQAYN ++NDLD+ELDH+K+AF+ EM +F DY
Sbjct: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQSVNDLDRELDHLKSAFEAEMLKFSRDY 116
>ref|XP_004489205.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like [Cicer
arietinum] gi|502152948|ref|XP_004509165.1| PREDICTED:
DNA-directed RNA polymerase II subunit RPB11-like
isoform X1 [Cicer arietinum]
gi|502152950|ref|XP_004509166.1| PREDICTED: DNA-directed
RNA polymerase II subunit RPB11-like isoform X2 [Cicer
arietinum]
Length = 116
Score = 189 bits (480), Expect = 3e-46
Identities = 88/116 (75%), Positives = 102/116 (87%)
Frame = -2
Query: 358 MNAPERFDKFVVPEGTKKVSYERDLKIMNAATFVIEREDHTIANITRMQLHRDPTVLFAG 179
MNAP+R+++FVVPEGTKKVSYERD KI+NAA+F IEREDHTIANI RMQLHRDP VLFAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIANILRMQLHRDPNVLFAG 60
Query: 178 YRLPHPLQYKVQLRIQTTSQSSPMQAYNLAINDLDKELDHIKNAFQNEMARFQTDY 11
Y+LPHPLQYK+ +RI T SQSSPMQAYN +INDLDKELD +KN F+ E+ +F DY
Sbjct: 61 YKLPHPLQYKIIVRIHTASQSSPMQAYNQSINDLDKELDQLKNGFEAELLKFSKDY 116
>ref|XP_002285578.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11 [Vitis
vinifera] gi|296082163|emb|CBI21168.3| unnamed protein
product [Vitis vinifera]
Length = 116
Score = 187 bits (475), Expect = 1e-45
Identities = 87/116 (75%), Positives = 103/116 (88%)
Frame = -2
Query: 358 MNAPERFDKFVVPEGTKKVSYERDLKIMNAATFVIEREDHTIANITRMQLHRDPTVLFAG 179
MNAP+R+++FVVPEGTKKVSYERD KI+NAA+F +EREDHTI NI RMQLHRD VLFAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTVEREDHTIGNILRMQLHRDENVLFAG 60
Query: 178 YRLPHPLQYKVQLRIQTTSQSSPMQAYNLAINDLDKELDHIKNAFQNEMARFQTDY 11
Y+LPHPLQYK+ +RI TTSQSSPMQAYN AINDLDKELD++KNAF+ E+A+ +Y
Sbjct: 61 YKLPHPLQYKIIIRIHTTSQSSPMQAYNQAINDLDKELDYLKNAFEVELAKHSREY 116
>gb|EMJ02624.1| hypothetical protein PRUPE_ppa013559mg [Prunus persica]
Length = 116
Score = 186 bits (473), Expect = 2e-45
Identities = 87/116 (75%), Positives = 102/116 (87%)
Frame = -2
Query: 358 MNAPERFDKFVVPEGTKKVSYERDLKIMNAATFVIEREDHTIANITRMQLHRDPTVLFAG 179
MNAP+R+++FVVPEGTKKVSYERD KI+NAA+F IEREDHTI NI RMQLHRD VLFAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDENVLFAG 60
Query: 178 YRLPHPLQYKVQLRIQTTSQSSPMQAYNLAINDLDKELDHIKNAFQNEMARFQTDY 11
Y+LPHPLQYK+ +RI TTSQSSPMQAYN AINDLDKELDH+K+ F+ E+A+ +Y
Sbjct: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKSCFEAEVAKHSVEY 116
>ref|XP_001753081.1| predicted protein [Physcomitrella patens]
gi|162695780|gb|EDQ82122.1| predicted protein
[Physcomitrella patens]
Length = 117
Score = 186 bits (473), Expect = 2e-45
Identities = 84/116 (72%), Positives = 104/116 (89%)
Frame = -2
Query: 358 MNAPERFDKFVVPEGTKKVSYERDLKIMNAATFVIEREDHTIANITRMQLHRDPTVLFAG 179
MNAP+R+++FVVPEG KKV+YERD+K+MNAATF +EREDHT+ N+ RMQLHRDP+VLFAG
Sbjct: 1 MNAPDRYERFVVPEGMKKVAYERDMKVMNAATFTVEREDHTVGNVIRMQLHRDPSVLFAG 60
Query: 178 YRLPHPLQYKVQLRIQTTSQSSPMQAYNLAINDLDKELDHIKNAFQNEMARFQTDY 11
YRLPHPLQY++ ++IQTTSQSSPMQAYNLAI DL KELDH+K F++E ++ Q DY
Sbjct: 61 YRLPHPLQYRLVVKIQTTSQSSPMQAYNLAITDLIKELDHLKAVFEHETSQKQADY 116
>ref|XP_006292069.1| hypothetical protein CARUB_v10018264mg [Capsella rubella]
gi|482560776|gb|EOA24967.1| hypothetical protein
CARUB_v10018264mg [Capsella rubella]
Length = 116
Score = 185 bits (469), Expect = 6e-45
Identities = 86/116 (74%), Positives = 102/116 (87%)
Frame = -2
Query: 358 MNAPERFDKFVVPEGTKKVSYERDLKIMNAATFVIEREDHTIANITRMQLHRDPTVLFAG 179
MNAP+R+++FVVPEGTKKVSY+RD KI+NAA+F IEREDHTI NI RMQLHRD VLFAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVSYDRDTKIINAASFTIEREDHTIGNIVRMQLHRDENVLFAG 60
Query: 178 YRLPHPLQYKVQLRIQTTSQSSPMQAYNLAINDLDKELDHIKNAFQNEMARFQTDY 11
Y+LPHPL+YK+ +RI TTSQSSPMQAYN AINDLDKELD++KN F+ E+A+F Y
Sbjct: 61 YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQY 116
>gb|ACJ83854.1| unknown [Medicago truncatula] gi|388519401|gb|AFK47762.1| unknown
[Medicago truncatula]
Length = 116
Score = 185 bits (469), Expect = 6e-45
Identities = 85/116 (73%), Positives = 102/116 (87%)
Frame = -2
Query: 358 MNAPERFDKFVVPEGTKKVSYERDLKIMNAATFVIEREDHTIANITRMQLHRDPTVLFAG 179
MNAP+R+++FVVPEGTKKV+YERD KI+NAA+F IEREDHTI NI RMQLH+DP VLFAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVAYERDTKIINAASFTIEREDHTIGNILRMQLHKDPNVLFAG 60
Query: 178 YRLPHPLQYKVQLRIQTTSQSSPMQAYNLAINDLDKELDHIKNAFQNEMARFQTDY 11
Y+LPHPLQYK+ +RI TTSQSSPMQAYN +INDLDKELD +K+ F+ E+ +F DY
Sbjct: 61 YKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFEAELLKFSKDY 116
>ref|XP_002313254.1| DNA-directed RNA polymerase II 13.6 kDa polypeptide family protein
[Populus trichocarpa] gi|566186802|ref|XP_006379118.1|
hypothetical protein POPTR_0009s07520g [Populus
trichocarpa] gi|118484276|gb|ABK94017.1| unknown
[Populus trichocarpa] gi|222849662|gb|EEE87209.1|
DNA-directed RNA polymerase II 13.6 kDa polypeptide
family protein [Populus trichocarpa]
gi|550331237|gb|ERP56915.1| hypothetical protein
POPTR_0009s07520g [Populus trichocarpa]
Length = 116
Score = 185 bits (469), Expect = 6e-45
Identities = 87/116 (75%), Positives = 101/116 (87%)
Frame = -2
Query: 358 MNAPERFDKFVVPEGTKKVSYERDLKIMNAATFVIEREDHTIANITRMQLHRDPTVLFAG 179
MNAP+R+++FVVPEGTKKVSYERD KI+NAA+F +EREDHTI NI RMQLHRD VLFAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTVEREDHTIGNILRMQLHRDDNVLFAG 60
Query: 178 YRLPHPLQYKVQLRIQTTSQSSPMQAYNLAINDLDKELDHIKNAFQNEMARFQTDY 11
Y+LPHPL+YK+ +RI TTSQSSPMQAYN AINDLDKELDH+KNAF+ E+A Y
Sbjct: 61 YKLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAELANRPGQY 116
>ref|XP_004289695.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
isoform 2 [Fragaria vesca subsp. vesca]
Length = 118
Score = 184 bits (468), Expect = 8e-45
Identities = 89/118 (75%), Positives = 103/118 (87%), Gaps = 2/118 (1%)
Frame = -2
Query: 358 MNAPERFDKFVVPEGTKKVSYERDLKIMNAATFVIEREDHTIANITRMQLHRDPTVLFAG 179
MNAP+R+++FVVPEGTKKVSYERD KI+NAA+F IEREDHTI NI RMQLHRD VLFAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDENVLFAG 60
Query: 178 YRLPHPLQYKVQLRIQTTSQSSPMQAYNLAINDLDKELDHIKNAFQNEMAR--FQTDY 11
Y+LPHPLQYK+ +RI TTSQSSPMQAYN AINDLDKELDH+K+ F+ E+A+ Q DY
Sbjct: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKSNFEAEVAKHSMQVDY 118
>ref|XP_006403846.1| hypothetical protein EUTSA_v10010833mg [Eutrema salsugineum]
gi|557104965|gb|ESQ45299.1| hypothetical protein
EUTSA_v10010833mg [Eutrema salsugineum]
Length = 116
Score = 184 bits (467), Expect = 1e-44
Identities = 85/116 (73%), Positives = 103/116 (88%)
Frame = -2
Query: 358 MNAPERFDKFVVPEGTKKVSYERDLKIMNAATFVIEREDHTIANITRMQLHRDPTVLFAG 179
MNAP+R+++FVVPEGTKKV+Y+RD KI+NAA+F IEREDHTI NI RMQLHRD VLFAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVAYDRDTKIINAASFTIEREDHTIGNIVRMQLHRDENVLFAG 60
Query: 178 YRLPHPLQYKVQLRIQTTSQSSPMQAYNLAINDLDKELDHIKNAFQNEMARFQTDY 11
Y+LPHPL+YK+ +RI TTSQSSPMQAYN AINDLDKEL+++KN F+ E+A+F T Y
Sbjct: 61 YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELEYLKNQFEAEVAKFSTQY 116
>ref|NP_190777.1| DNA-directed RNA polymerases II, IV and V subunit 11 [Arabidopsis
thaliana] gi|3219858|sp|Q38859.1|NRPBB_ARATH RecName:
Full=DNA-directed RNA polymerases II, IV and V subunit
11; AltName: Full=DNA-directed RNA polymerase II 13.6
kDa polypeptide; AltName: Full=DNA-directed RNA
polymerase II subunit J; AltName: Full=DNA-directed RNA
polymerase II subunit RPB11; Short=RNA polymerase II
subunit B11 gi|881501|gb|AAB02849.1| RNA polymerase II
13.6 kDa subunit [Arabidopsis thaliana]
gi|4678938|emb|CAB41329.1| DNA-directed RNA polymerase
II 13.6K chain [Arabidopsis thaliana]
gi|29029080|gb|AAO64919.1| At3g52090 [Arabidopsis
thaliana] gi|332645368|gb|AEE78889.1| non-catalytic
subunit of DNA-dependent RNA polymerases II, IV and V
[Arabidopsis thaliana]
Length = 116
Score = 184 bits (467), Expect = 1e-44
Identities = 85/116 (73%), Positives = 102/116 (87%)
Frame = -2
Query: 358 MNAPERFDKFVVPEGTKKVSYERDLKIMNAATFVIEREDHTIANITRMQLHRDPTVLFAG 179
MNAPER+++FVVPEGTKKVSY+RD KI+NAA+F +EREDHTI NI RMQLHRD VLFAG
Sbjct: 1 MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60
Query: 178 YRLPHPLQYKVQLRIQTTSQSSPMQAYNLAINDLDKELDHIKNAFQNEMARFQTDY 11
Y+LPHPL+YK+ +RI TTSQSSPMQAYN AINDLDKELD++KN F+ E+A+F +
Sbjct: 61 YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQF 116
>gb|EOX96660.1| DNA-directed RNA polymerase II subunit RPB11 [Theobroma cacao]
Length = 169
Score = 183 bits (465), Expect = 2e-44
Identities = 86/106 (81%), Positives = 97/106 (91%)
Frame = -2
Query: 358 MNAPERFDKFVVPEGTKKVSYERDLKIMNAATFVIEREDHTIANITRMQLHRDPTVLFAG 179
MNAP+R+++FVVPEGTKKVSYERD KI+NAA+F IEREDHTI NI RMQLHRD VLFAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNIVRMQLHRDENVLFAG 60
Query: 178 YRLPHPLQYKVQLRIQTTSQSSPMQAYNLAINDLDKELDHIKNAFQ 41
Y+LPHPLQYK+ +RI TTSQSSPMQAYN AINDLDKELDH+KNAF+
Sbjct: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFE 106
>ref|XP_002877842.1| ATRPB13.6 [Arabidopsis lyrata subsp. lyrata]
gi|297323680|gb|EFH54101.1| ATRPB13.6 [Arabidopsis
lyrata subsp. lyrata]
Length = 116
Score = 183 bits (465), Expect = 2e-44
Identities = 85/116 (73%), Positives = 102/116 (87%)
Frame = -2
Query: 358 MNAPERFDKFVVPEGTKKVSYERDLKIMNAATFVIEREDHTIANITRMQLHRDPTVLFAG 179
MNAP+R+++FVVPEGTKKVSY+RD KI+NAA+F IEREDHTI NI RMQLHRD VLFAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVSYDRDTKIINAASFTIEREDHTIGNIVRMQLHRDENVLFAG 60
Query: 178 YRLPHPLQYKVQLRIQTTSQSSPMQAYNLAINDLDKELDHIKNAFQNEMARFQTDY 11
Y+LPHPL+YK+ +RI TTSQSSPMQAYN AINDLDKELD++KN F+ E+A+F +
Sbjct: 61 YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQF 116