BLASTX nr result

ID: Ephedra25_contig00004114 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00004114
         (992 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006362818.1| PREDICTED: extensin-1-like isoform X1 [Solan...    57   8e-06

>ref|XP_006362818.1| PREDICTED: extensin-1-like isoform X1 [Solanum tuberosum]
          Length = 464

 Score = 57.4 bits (137), Expect = 8e-06
 Identities = 56/192 (29%), Positives = 73/192 (38%), Gaps = 12/192 (6%)
 Frame = +2

Query: 254 PNYPVYMVPSHHHSAPNMQQMNPVMRPVH--GQPGYGMPVPRSMTVVSHNHLPGVYSSDG 427
           P++PVY  P  HH  P  +   P  +P +    P Y  P P       H H P VY S  
Sbjct: 44  PHHPVYKSPPPHHHHPVYKSPPPSEKPHYPPHTPVYKSPPPH------HIHHP-VYKS-- 94

Query: 428 MHPKPVTVPIQHPTAPPM-----QRQPVYDTMPKHVMMPAATQLKEHQVPVLPNVVAGVP 592
             P P T PI     PP         PVY + P H           H  PV  +     P
Sbjct: 95  --PPPPT-PIYKSPPPPKTPHYPPHTPVYKSPPPH-----------HHHPVYKSPPPPTP 140

Query: 593 RYRAPQPRPADVRV-----MYRPGPVPTSVYPDQQYAVHHMQAPQSMGFENPPQQQMYYT 757
            Y++P P P D        +Y+  P PT VY            P +  +++PP     Y 
Sbjct: 141 VYKSPSP-PKDPHYPPHTPVYKSPPPPTPVYKSPPPPKEPHYPPHTPVYKSPPPPTPVY- 198

Query: 758 QSASVPSHPHHP 793
           +S   P  P+HP
Sbjct: 199 KSPPPPKRPYHP 210


Top