BLASTX nr result
ID: Ephedra25_contig00004061
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra25_contig00004061
(1433 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI28010.3| unnamed protein product [Vitis vinifera] 234 9e-59
ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [A... 226 1e-56
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme... 226 2e-56
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr... 215 4e-53
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr... 212 4e-52
gb|EEC70113.1| hypothetical protein OsI_00772 [Oryza sativa Indi... 199 2e-48
ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polyme... 199 3e-48
ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutr... 199 3e-48
gb|EXB59781.1| putative RNA-dependent RNA polymerase 4 [Morus no... 198 4e-48
ref|XP_004251631.1| PREDICTED: probable RNA-dependent RNA polyme... 196 2e-47
sp|Q5QMN5.2|RDR3_ORYSJ RecName: Full=Probable RNA-dependent RNA ... 193 2e-46
gb|EEE54052.1| hypothetical protein OsJ_00745 [Oryza sativa Japo... 193 2e-46
ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Caps... 192 3e-46
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ... 189 2e-45
ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme... 188 6e-45
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu... 187 7e-45
ref|NP_179582.2| RNA-dependent RNA polymerase family protein [Ar... 187 7e-45
ref|XP_002883964.1| hypothetical protein ARALYDRAFT_319567 [Arab... 187 9e-45
ref|XP_006645607.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA... 187 1e-44
gb|ESW24973.1| hypothetical protein PHAVU_004G1764001g, partial ... 186 3e-44
>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
Length = 929
Score = 234 bits (596), Expect = 9e-59
Identities = 155/435 (35%), Positives = 220/435 (50%), Gaps = 6/435 (1%)
Frame = -1
Query: 1340 VEQMVKEIAAKHGIQPPDQRVKQELDALGEDRALSILIKVSKVSVPIRNLSAYIKWAIKN 1161
VEQM++ I + PP+ ++ L +LGE+ L +L K+S + IRNLSA I + +
Sbjct: 9 VEQMLQRICTEQQQPPPEAHTRRNLASLGEESTLELLRKISHLK--IRNLSALINYMV-- 64
Query: 1160 LNDXXXXXXXXXXXXXXXXXXXXTVHDNDNEVTSISIPNDGWEDESSCSTSMPTSRNCIS 981
G + ++ PT ++ IS
Sbjct: 65 ----------------------------------------GKAAQGDAASHSPTPKHLIS 84
Query: 980 ------KNCERQPSSEKAMALDNLAFPKAFMALAYLAQDELDELLSLNEINSLKMLSMGA 819
K RQ SS + +AL L F KAF+ L+Y+ ++LLS EI LK L MG
Sbjct: 85 SPSSTPKKARRQASSPQLVALGELEFRKAFLILSYIGDKRPEDLLSAEEILKLKNLPMGV 144
Query: 818 VEQLLRKKQRKKCGSNFQLDKKVLENEFWKDWNPDEDKDYDKNPNIFLQYHCYVDVNGKY 639
E + L +K ++ E D + +D + + YHC+V +G Y
Sbjct: 145 FETEVWNN----------LGRKFIKEE-------DRQRSFDWDSDKTHIYHCHVSPDGSY 187
Query: 638 TFKGPFAEQEKTHLHRVYGDSNVLRVHFAEELHDTKSYTPSNLEKEKFHWLAQNGIYIGR 459
FKGP+ + +THL RV GD N+L V FAE++ D S S ++ +A+ GI++G
Sbjct: 188 RFKGPYLNKTRTHLQRVLGDENILLVKFAEDVTDRSSLNCSTDSNASYNKIAREGIFVGL 247
Query: 458 RKYLFFVYKEIDKREKKVSKNKRNPTVSTKCYFVCITSFSIANKNMSRGMSRNPVQEARC 279
R+Y FFV+K+ K EK K+NPT S KCYFV + S +++ K V EARC
Sbjct: 248 RQYRFFVFKDGGKEEK-----KKNPTSSVKCYFVFMESSALSGKT---------VHEARC 293
Query: 278 QFMHIHNVATLPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIECIDENGNAARDINGEV 99
FMH H V+++ KYMARFSLILSKT LD DLS V ++ D DE+G+ D + +
Sbjct: 294 IFMHAHMVSSVAKYMARFSLILSKTVKLDVDLSTVNIQRIDDEPGRDEDGHVVYDEDWKP 353
Query: 98 MIHTDGTGFISEDLA 54
+I TDGTGFISEDLA
Sbjct: 354 LILTDGTGFISEDLA 368
>ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [Amborella trichopoda]
gi|548857326|gb|ERN15132.1| hypothetical protein
AMTR_s00056p00110240 [Amborella trichopoda]
Length = 988
Score = 226 bits (577), Expect = 1e-56
Identities = 151/439 (34%), Positives = 226/439 (51%), Gaps = 4/439 (0%)
Frame = -1
Query: 1340 VEQMVKEIAAKHGIQPPDQRVKQELDALGEDRALSILIKVSKVSVPIRNLSAYIKWAIKN 1161
VE + +I +QP R ++ L ++GE A+++L +S + IR+ SA+I + +KN
Sbjct: 28 VEAKLGQICRYQSVQPASMRAREMLASIGESSAMNLLNWIS--TQKIRDFSAFIIYMVKN 85
Query: 1160 LNDXXXXXXXXXXXXXXXXXXXXTVHDNDNEVTSISIPNDGWEDESSCSTSMPTSRNCIS 981
+N +V S + +D C+ ++ S
Sbjct: 86 MN-------------------------RPPDVLSST------DDVCECAPNLEPSSLMND 114
Query: 980 KNCERQPSSEKAM--ALDNLAFPKAFMALAYLAQDELDELLSLNEINSLKMLSMGAVEQL 807
C S+E AL L F KAF+ L Y+ + +D++LS+ +I + K LSM E
Sbjct: 115 FRCNTYGSNEFQFRKALGELEFRKAFLILNYIGKQRIDDVLSIEKIRTWKDLSMQCFEYE 174
Query: 806 LRKKQRKKCGSNFQLDKKVLENEFWKDWNPDEDKDYDKNPNIFLQYHCYVDVNGKYTFKG 627
+ + ++ S Q D++ L DW+ + ++Y C+VD G ++FKG
Sbjct: 175 VWRTVGERYAS--QTDRRNL------DWDSGKAENYQ----------CHVDPVGNFSFKG 216
Query: 626 PFAEQEKTHLHRVYGDSNVLRVHFAEELHDTKSYTPSNLEKEK--FHWLAQNGIYIGRRK 453
PF E +THL RV GD VL V FAEE+ D + NL + K F +A++GI +G R+
Sbjct: 217 PFLESTQTHLRRVLGDDKVLTVKFAEEMVDERR-GEFNLSRSKNIFRRIAKDGILVGLRR 275
Query: 452 YLFFVYKEIDKREKKVSKNKRNPTVSTKCYFVCITSFSIANKNMSRGMSRNPVQEARCQF 273
Y FFV+K+ K EK+ + N T KCYFVC+ S + ++ + +S +QEAR F
Sbjct: 276 YHFFVFKDGGKEEKRKNAN----TTGVKCYFVCMKSDAESDMHTPYILSNKTIQEARSMF 331
Query: 272 MHIHNVATLPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIECIDENGNAARDINGEVMI 93
M +H V L KYMARFSLILSKT L+ DL V + D C+D + D NG+ +I
Sbjct: 332 MDVHTVPNLAKYMARFSLILSKTIKLEVDLGSVNIERINDKPCLDNHNEIVYDQNGQCLI 391
Query: 92 HTDGTGFISEDLAEKIQRS 36
HTDGTGFISEDL K ++
Sbjct: 392 HTDGTGFISEDLMSKFSKN 410
>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 226 bits (576), Expect = 2e-56
Identities = 155/443 (34%), Positives = 221/443 (49%), Gaps = 14/443 (3%)
Frame = -1
Query: 1340 VEQMVKEIAAKHGIQPPDQRVKQELDALGEDRALSILIKVSKVSVPIRNLSAYIKWAIKN 1161
VEQM++ I + PP+ ++ L +LGE+ L +L K+S + IRNLSA I + +
Sbjct: 9 VEQMLQRICTEQQQPPPEAHTRRNLASLGEESTLELLRKISHLK--IRNLSALINYMV-- 64
Query: 1160 LNDXXXXXXXXXXXXXXXXXXXXTVHDNDNEVTSISIPNDGWEDESSCSTSMPTSRNCIS 981
G + ++ PT ++ IS
Sbjct: 65 ----------------------------------------GKAAQGDAASHSPTPKHLIS 84
Query: 980 ------KNCERQPSSEKAMALDNLAFPKAFMALAYLAQDELDELLSLNEINSLKMLSMGA 819
K RQ SS + +AL L F KAF+ L+Y+ + ++LLS EI LK L MG
Sbjct: 85 SPSSTPKKARRQASSPQLVALGELEFRKAFLILSYIGELRPEDLLSAEEILKLKNLPMGV 144
Query: 818 VEQLLRKKQRKKCGSNFQLDKKVLENEFWKDWNPDEDKDYDKNPNIFLQYHCYVDVNGKY 639
E + L +K ++ E D + +D + + YHC+V +G Y
Sbjct: 145 FETEVWNN----------LGRKFIKEE-------DRQRSFDWDSDKTHIYHCHVSPDGSY 187
Query: 638 TFK--------GPFAEQEKTHLHRVYGDSNVLRVHFAEELHDTKSYTPSNLEKEKFHWLA 483
FK GP+ + +THL RV GD N+L V FAE++ D S S ++ +A
Sbjct: 188 RFKVCISSSLNGPYLNKTRTHLQRVLGDENILLVKFAEDVTDRSSLNCSTDSNASYNKIA 247
Query: 482 QNGIYIGRRKYLFFVYKEIDKREKKVSKNKRNPTVSTKCYFVCITSFSIANKNMSRGMSR 303
+ GI++G R+Y FFV+K+ K EKK +NPT S KCYFV + S +++ K
Sbjct: 248 REGIFVGLRQYRFFVFKDGGKEEKK-----KNPTSSVKCYFVFMESSALSGKT------- 295
Query: 302 NPVQEARCQFMHIHNVATLPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIECIDENGNA 123
V EARC FMH H V+++ KYMARFSLILSKT LD DLS V ++ D DE+G+
Sbjct: 296 --VHEARCIFMHAHMVSSVAKYMARFSLILSKTVKLDVDLSTVNIQRIDDEPGRDEDGHV 353
Query: 122 ARDINGEVMIHTDGTGFISEDLA 54
D + + +I TDGTGFISEDLA
Sbjct: 354 VYDEDWKPLILTDGTGFISEDLA 376
>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843311|ref|XP_006475557.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
sinensis] gi|557554498|gb|ESR64512.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1013
Score = 215 bits (547), Expect = 4e-53
Identities = 145/433 (33%), Positives = 219/433 (50%), Gaps = 2/433 (0%)
Frame = -1
Query: 1340 VEQMVKEIAAKHGIQPPDQRVKQELDALGEDRALSILIKVSKVSVPIRNLSAYIKWAIKN 1161
VEQ++ +I + PPD ++ L +LGED AL +L ++ + + S YI + +K
Sbjct: 19 VEQLISKIYTEQNKLPPDDGARRSLASLGEDAALDVLRTIASDKIKY-SFSGYINYLVKK 77
Query: 1160 LNDXXXXXXXXXXXXXXXXXXXXTVHDNDNEVTSISIPNDGWEDESSCSTSMP--TSRNC 987
N+ V V +++P D +S + P + +
Sbjct: 78 RNNNGSPLKRVCFSPSSPQQNRSPV--TVTTVRLLNLPQDYVVKQSPVADQQPRGSPMSS 135
Query: 986 ISKNCERQPSSEKAMALDNLAFPKAFMALAYLAQDELDELLSLNEINSLKMLSMGAVEQL 807
IS + S + +AL L F KAF+ L+Y+ ++ L+E+++ +EI ++ L M E
Sbjct: 136 ISHAMRHRASIPQYVALGELEFRKAFLILSYIGENSLEEVITADEIRGMRDLQMARFESE 195
Query: 806 LRKKQRKKCGSNFQLDKKVLENEFWKDWNPDEDKDYDKNPNIFLQYHCYVDVNGKYTFKG 627
+ +K +K S Q D+++ W D K + YHC++ G TFKG
Sbjct: 196 VWEKLGRKNIS--QEDRRMSLK-----W--DSGKTH--------MYHCHISTKGNCTFKG 238
Query: 626 PFAEQEKTHLHRVYGDSNVLRVHFAEELHDTKSYTPSNLEKEKFHWLAQNGIYIGRRKYL 447
P+ Q +THL R GD N+L V F EEL +S N K++ +A+ GI +G R Y
Sbjct: 239 PYLNQTRTHLQRELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYH 298
Query: 446 FFVYKEIDKREKKVSKNKRNPTVSTKCYFVCITSFSIANKNMSRGMSRNPVQEARCQFMH 267
FFV+K+ K EKK K T KCYFV + S + + +S V EAR FMH
Sbjct: 299 FFVFKDGGKEEKK----KDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMH 354
Query: 266 IHNVATLPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIECIDENGNAARDINGEVMIHT 87
+ V+++ YM+R SLILSKT L+ D S + + +D C D++GN +GE +IHT
Sbjct: 355 VRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYK-DGEALIHT 413
Query: 86 DGTGFISEDLAEK 48
DGTGFISEDLA K
Sbjct: 414 DGTGFISEDLALK 426
>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843309|ref|XP_006475556.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
sinensis] gi|557554497|gb|ESR64511.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1015
Score = 212 bits (539), Expect = 4e-52
Identities = 143/433 (33%), Positives = 217/433 (50%), Gaps = 2/433 (0%)
Frame = -1
Query: 1340 VEQMVKEIAAKHGIQPPDQRVKQELDALGEDRALSILIKVSKVSVPIRNLSAYIKWAIKN 1161
VEQ++ +I + PPD ++ L +LGED AL +L ++ + + S YI + +K
Sbjct: 19 VEQLISKIYTEQNKLPPDDGARRSLASLGEDAALDVLRTIASDKIKY-SFSGYINYLVKK 77
Query: 1160 LNDXXXXXXXXXXXXXXXXXXXXTVHDNDNEVTSISIPNDGWEDESSCSTSMP--TSRNC 987
N+ V + ++ D +S + P + +
Sbjct: 78 RNNNGSPLKRVCFSPSSPQQNRSPVTVTTVRLLNLPQGTDYVVKQSPVADQQPRGSPMSS 137
Query: 986 ISKNCERQPSSEKAMALDNLAFPKAFMALAYLAQDELDELLSLNEINSLKMLSMGAVEQL 807
IS + S + +AL L F KAF+ L+Y+ ++ L+E+++ +EI ++ L M E
Sbjct: 138 ISHAMRHRASIPQYVALGELEFRKAFLILSYIGENSLEEVITADEIRGMRDLQMARFESE 197
Query: 806 LRKKQRKKCGSNFQLDKKVLENEFWKDWNPDEDKDYDKNPNIFLQYHCYVDVNGKYTFKG 627
+ +K +K S Q D+++ W D K + YHC++ G TFKG
Sbjct: 198 VWEKLGRKNIS--QEDRRMSLK-----W--DSGKTH--------MYHCHISTKGNCTFKG 240
Query: 626 PFAEQEKTHLHRVYGDSNVLRVHFAEELHDTKSYTPSNLEKEKFHWLAQNGIYIGRRKYL 447
P+ Q +THL R GD N+L V F EEL +S N K++ +A+ GI +G R Y
Sbjct: 241 PYLNQTRTHLQRELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYH 300
Query: 446 FFVYKEIDKREKKVSKNKRNPTVSTKCYFVCITSFSIANKNMSRGMSRNPVQEARCQFMH 267
FFV+K+ K EKK K T KCYFV + S + + +S V EAR FMH
Sbjct: 301 FFVFKDGGKEEKK----KDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMH 356
Query: 266 IHNVATLPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIECIDENGNAARDINGEVMIHT 87
+ V+++ YM+R SLILSKT L+ D S + + +D C D++GN +GE +IHT
Sbjct: 357 VRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYK-DGEALIHT 415
Query: 86 DGTGFISEDLAEK 48
DGTGFISEDLA K
Sbjct: 416 DGTGFISEDLALK 428
>gb|EEC70113.1| hypothetical protein OsI_00772 [Oryza sativa Indica Group]
Length = 1155
Score = 199 bits (507), Expect = 2e-48
Identities = 132/324 (40%), Positives = 181/324 (55%), Gaps = 7/324 (2%)
Frame = -1
Query: 1004 PTSRNCISKNCERQPSSEKAMALDNLAFPKAFMALAYLAQDELDELLSLNEINSLKMLSM 825
PT+ + N R+ +S + +AL+ L F K FM AYLA ++++ +LS++ I SLK LSM
Sbjct: 266 PTTTCHTTDNALREAASPQMLALEELGFRKIFMVFAYLASEKIENVLSVDYIRSLKFLSM 325
Query: 824 GAVE-QLLRKKQRKKCGSNFQLDKKVLENEFWKDWNPDEDKDYDKNPNIFLQYHCYVDVN 648
E Q+ R K ++ D K+ D +P + YHC V +
Sbjct: 326 VQFESQIWRTFGHKYIAAS------------------DRAKNLDSDPGMTKVYHCNVAIR 367
Query: 647 GKYT---FKGPFAEQEKTHLHRVYGDSNVLRVHFAEELHDTKSYTPSNLEKEKFHWLAQN 477
G FKGP+ E +THLH+V GD NVL V F +L DTK T + E +H +A++
Sbjct: 368 GDTVVKIFKGPYIENTRTHLHKVVGDDNVLVVKFMGKLSDTK--TDFSTYCEHYHKVAED 425
Query: 476 GIYIGRRKYLFFVYKEIDKREK---KVSKNKRNPTVSTKCYFVCITSFSIANKNMSRGMS 306
GI +G R+Y FFVYK+ K EK + ++K T +CYFV + S N + +S
Sbjct: 426 GIVLGLRRYRFFVYKDGGKEEKLKQEKIEDKNKCTSPVRCYFV--RTESGWNMDEPYILS 483
Query: 305 RNPVQEARCQFMHIHNVATLPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIECIDENGN 126
V +AR FMHI + TL KYMARF+LILSKT LD DLS V VR KD C+D +GN
Sbjct: 484 GRTVGQARELFMHISSAPTLAKYMARFALILSKTITLDADLSAVYVRRIKDEPCMDRHGN 543
Query: 125 AARDINGEVMIHTDGTGFISEDLA 54
+ E++IHTDGTG +S DLA
Sbjct: 544 VVHK-DQELLIHTDGTGLVSVDLA 566
>ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
tuberosum]
Length = 911
Score = 199 bits (505), Expect = 3e-48
Identities = 146/446 (32%), Positives = 212/446 (47%), Gaps = 17/446 (3%)
Frame = -1
Query: 1340 VEQMVKEIAAKHGIQPPDQRVKQELDALGEDRALSILIKVSKVSVPIR-NLSAYIKWAIK 1164
VE M+++I + G +P +++ L ++GE +L IL +S S PI+ +LSA++ + I
Sbjct: 24 VETMLEKICNEQGQKPLGTGIRRRLSSIGEKGSLEILKIIS--SRPIKKSLSAFLVYLID 81
Query: 1163 NLNDXXXXXXXXXXXXXXXXXXXXTVHDN---DNEVTSISIPNDGWEDESSCSTSMPTSR 993
D + E S S G+ +C++ +R
Sbjct: 82 RYPDCLSSSPFNSPLKRSSSPLLFPSPEGKRVQGESPSKSKLEMGF---LACASPQKVAR 138
Query: 992 NCISK-----NCERQPS--SEKAMALDNLAFPKAFMALAYLAQDELDELLSLNEINSLKM 834
+ NC R S++ M L+ L F K F+ L+Y+ +L++++S
Sbjct: 139 QLSFREEPESNCRRTSPNVSQQLMILNELEFRKLFLVLSYIGCKKLEDIVSPQ------- 191
Query: 833 LSMGAVEQLLRKKQRKKCGSNFQLDKKVLENEFWKDWNP------DEDKDYDKNPNIFLQ 672
+ ++RKK L E+E W + D K D N
Sbjct: 192 ----IADDIVRKKN---------LSMTDFESEIWNAFGKAYYAESDRSKYVDWNCRKTHI 238
Query: 671 YHCYVDVNGKYTFKGPFAEQEKTHLHRVYGDSNVLRVHFAEELHDTKSYTPSNLEKEKFH 492
Y+C++ NG+ TFKGP+ +THL R GD NVL V F E+ +
Sbjct: 239 YYCHIKQNGQCTFKGPYLNTARTHLQRALGDDNVLLVKFVEDTSCA-------------N 285
Query: 491 WLAQNGIYIGRRKYLFFVYKEIDKREKKVSKNKRNPTVSTKCYFVCITSFSIANKNMSRG 312
+ + GI +G R+Y FFVYK+ DK +KK + T S KCYFV S N S
Sbjct: 286 MIVEEGILVGLRRYRFFVYKD-DKEKKKSPAMMKKKTASLKCYFVRFESIETCNDGGSYV 344
Query: 311 MSRNPVQEARCQFMHIHNVATLPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIECIDEN 132
S + +ARCQFMH+H V+ + KY AR SLILSKT L +L+ VT+ +DI C DEN
Sbjct: 345 FSTKRISQARCQFMHVHMVSNMAKYAARLSLILSKTIKLQVNLASVTIERIEDILCRDEN 404
Query: 131 GNAARDINGEVMIHTDGTGFISEDLA 54
G +D +GE IHTDGTGFISEDLA
Sbjct: 405 GCIIKDEDGEPRIHTDGTGFISEDLA 430
>ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutrema salsugineum]
gi|557110064|gb|ESQ50361.1| hypothetical protein
EUTSA_v10001897mg [Eutrema salsugineum]
Length = 988
Score = 199 bits (505), Expect = 3e-48
Identities = 142/431 (32%), Positives = 209/431 (48%), Gaps = 1/431 (0%)
Frame = -1
Query: 1343 RVEQMVKEIAAKHGIQPPDQRVKQELDALGEDRALSILIKVSKVSVPIRNLSAYIKWAIK 1164
R+E+++ I ++H P + +Q L ++ ED A +L K V + NL +I +
Sbjct: 26 RLERLLDRIYSQHKCSPINDESRQRLSSIPEDLAFELLRKAFNSPV-MYNLDGFI---VS 81
Query: 1163 NLNDXXXXXXXXXXXXXXXXXXXXTVHDNDNEVTSISIPNDGWEDESSCSTSMPTSRNCI 984
N +S + ++E S P+ +
Sbjct: 82 KFNQAVSVTGSPRLSSGGSPA-------KSPPSSSRKHGSRVHQEEMSLDFEAPSPESLR 134
Query: 983 SKNCERQPS-SEKAMALDNLAFPKAFMALAYLAQDELDELLSLNEINSLKMLSMGAVEQL 807
+ P + +AL L F KAF+ L+Y L E+LS +EI K L M A E
Sbjct: 135 RGDIGGSPHIPPQILALSELEFKKAFLLLSYFPGQSLAEVLSADEIRQWKDLPMVAYEAA 194
Query: 806 LRKKQRKKCGSNFQLDKKVLENEFWKDWNPDEDKDYDKNPNIFLQYHCYVDVNGKYTFKG 627
+ + S +L + V +W D +K + Y C+V +G YTFKG
Sbjct: 195 VWDRL-----SRLELSQTVERVSL--EW--DSEKTH--------YYQCHVASDGSYTFKG 237
Query: 626 PFAEQEKTHLHRVYGDSNVLRVHFAEELHDTKSYTPSNLEKEKFHWLAQNGIYIGRRKYL 447
P E THLH+V GD NVL V FA+ ++ +Y SN + +A+NGI +G R+Y
Sbjct: 238 PLLEPTGTHLHKVLGDENVLTVKFADVQKNSSTY--SNDRYSAYKRIAKNGIMVGLRRYQ 295
Query: 446 FFVYKEIDKREKKVSKNKRNPTVSTKCYFVCITSFSIANKNMSRGMSRNPVQEARCQFMH 267
FFV+K++ K EKK K T KCYF+ S + + + S + EAR FMH
Sbjct: 296 FFVFKDVGKAEKK----KDFSTNGVKCYFIRTDSTAANDMGKAYIFSGKTINEARMHFMH 351
Query: 266 IHNVATLPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIECIDENGNAARDINGEVMIHT 87
+H + +L KYMARFSLILSKT L+ D++ +T + K+I C D+N N D N E +H+
Sbjct: 352 VHTLPSLAKYMARFSLILSKTKKLEVDMTGITYQEIKEIHCHDQNNNVVLDKNKEPRMHS 411
Query: 86 DGTGFISEDLA 54
DGTG+ISEDLA
Sbjct: 412 DGTGYISEDLA 422
>gb|EXB59781.1| putative RNA-dependent RNA polymerase 4 [Morus notabilis]
Length = 529
Score = 198 bits (504), Expect = 4e-48
Identities = 148/453 (32%), Positives = 227/453 (50%), Gaps = 10/453 (2%)
Frame = -1
Query: 1340 VEQMVKEIAAKHGIQPPDQRVKQELDALGEDRALSILIKVSKVSVPIRNLSAYIKWAIKN 1161
V ++++ I A+ PPD ++++L + GED AL +L ++ I++L ++ + ++
Sbjct: 22 VLELLERICAERSQPPPDAELRRKLASAGEDEALRVLRTIADCKTKIKSLHGFVTYLLRQ 81
Query: 1160 LNDXXXXXXXXXXXXXXXXXXXXTVHDNDNEVTSISIPNDGWEDESSCSTSMP-TSRNCI 984
S+S P+ E+S +S P T N
Sbjct: 82 ----------------------------QPPPPSLSSPSRSPVPENSRPSSSPGTFANSQ 113
Query: 983 SKNCERQPSSEKAMALDNLAFPKAFMALAYLAQDELDELLSLNEINSLKMLSMGAVEQLL 804
N + AL L F K F+ L Y+ ++EL + + EI SLK LSM E+ +
Sbjct: 114 GAN------GAQMEALGELEFRKQFLILNYIGRNELQSVTTAEEIRSLKNLSMVQFEKQV 167
Query: 803 RKKQRKKCGSNFQLDKKVLENEFWKDWNPDEDKDYDKNPNIFLQYHCYVDVNGKYTFKGP 624
++ +K Q D+++ + DW D K + Y C+V G + FKGP
Sbjct: 168 WQRFGEKYVD--QEDRRI-----YHDW--DSGKTHI--------YRCHVSPEGSFRFKGP 210
Query: 623 FAEQEKTHLHRVYGDSNVLRVHFAEELHDTKSYTPSNLEKEKFHWLAQNGIYIGRRKYLF 444
+ E+ K HL +V GD NVL V FAEE + S + + + + GI +G R+Y F
Sbjct: 211 YLEKPKKHLQKVLGDDNVLMVKFAEEEAERFSIGSRDHYYAGYSKICREGILVGLRRYCF 270
Query: 443 FVYKEIDKREKKVSKNKRNPTVS-TKCYFVCITSFSIANKNMSRGMSRNPVQEARCQFMH 267
FV+K+ K EKK ++PT S KC+F+ I S + ++N+S +S + EAR FMH
Sbjct: 271 FVFKDGGKEEKK-----KDPTSSPVKCFFIRIHSDACIDQNVSYILSGRTISEARKLFMH 325
Query: 266 IHNVATLPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIECIDENGNAA-RDINGEVMIH 90
H V+++ YM RFSLILS T L DLS V + +D C DE+GN RD G+ +I+
Sbjct: 326 AHTVSSVSNYMIRFSLILSNTLSLKIDLSSVNIDIIEDEYCQDESGNPIYRD--GKPLIY 383
Query: 89 TDGTGFISEDLA-------EKIQRSKNPSCEVL 12
TDGTGFISEDLA EK +R + + E++
Sbjct: 384 TDGTGFISEDLALLCPKNLEKWKRINDNNIEIM 416
>ref|XP_004251631.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
lycopersicum]
Length = 759
Score = 196 bits (499), Expect = 2e-47
Identities = 149/474 (31%), Positives = 220/474 (46%), Gaps = 43/474 (9%)
Frame = -1
Query: 1340 VEQMVKEIAAKHGIQPPDQRVKQELDALGEDRALSILIKVSKVSVPIRNLSAYIKW-AIK 1164
V+QM+ +I K PD V++ L A+GE+R+L IL ++SK + + LS +I + A K
Sbjct: 18 VQQMINQICKKERQNSPDDTVRRLLVAIGEERSLYILNEISKCQIK-KTLSGFIVFMAKK 76
Query: 1163 NLNDXXXXXXXXXXXXXXXXXXXXTVHDNDNEVTSISIPNDGWE---------------- 1032
H S+S PN
Sbjct: 77 YYQSETQQFYQKQNHEQPVLSAESFYHSPQIRRNSLSSPNSSCSSVNFSPRNRPIFQDRD 136
Query: 1031 ---DESSCSTSMP-------TSRNCISKNCERQPS-------------SEKAMALDNLAF 921
D S TS P + + C PS SE+ +AL+ L F
Sbjct: 137 IVGDTSDSPTSGPRIPSPPLSPVTTSFQKCHYDPSPSKFRDRASTRGISEQLLALNKLEF 196
Query: 920 PKAFMALAYLAQDELDELLSLNEINSLKML---SMGAVEQLLRKKQRKKCGSNFQLDKKV 750
K F+ L Y+ + +++++++L+++ + + M E + K C N ++
Sbjct: 197 RKFFLILNYIGRRKVEDVITLHDVGDILDMIYQPMSHFESYIWNKYGHLCEHNKRVQ--- 253
Query: 749 LENEFWKDWNPDEDKDYDKNPNIFLQYHCYVDVNGKYTFKGPFAEQEKTHLHRVYGDSNV 570
+ DW+ YHC+V + YTFKGP+ + E+THL GD NV
Sbjct: 254 -----YLDWDSGRTH----------LYHCHVHSDRSYTFKGPYLKAERTHLQHSLGDENV 298
Query: 569 LRVHFAEELHDTKSYTPSNLEKEKFHWLAQNGIYIGRRKYLFFVYKEIDKREKKVSKNKR 390
L V F + TP E+ + QNGI +G R+Y FFVYK D +K+ K+K
Sbjct: 299 LIVKFEQN-------TPGCPEE-----IVQNGILVGLRRYRFFVYK--DDGKKRRLKDKE 344
Query: 389 NPTVSTKCYFVCITSFSIANKNMSRGMSRNPVQEARCQFMHIHNVATLPKYMARFSLILS 210
S KCYFV + S + +N + + V EARC FMH+H V+++ KYMARFSLILS
Sbjct: 345 EKIDSVKCYFVRMESLN-PYENETYILHDKMVHEARCNFMHVHMVSSMAKYMARFSLILS 403
Query: 209 KTTPLDYDLSDVTVRFEKDIECIDENGNAARDINGEVMIHTDGTGFISEDLAEK 48
T L DL+ V + +DI C D++G D +G+ +IHTDGTG+ISEDLA K
Sbjct: 404 TTVKLQVDLNSVNIDRIEDIYCHDKSGRIIYDEDGKPLIHTDGTGYISEDLARK 457
>sp|Q5QMN5.2|RDR3_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 3; Short=OsRDR3
Length = 1153
Score = 193 bits (490), Expect = 2e-46
Identities = 130/324 (40%), Positives = 177/324 (54%), Gaps = 7/324 (2%)
Frame = -1
Query: 1004 PTSRNCISKNCERQPSSEKAMALDNLAFPKAFMALAYLAQDELDELLSLNEINSLKMLSM 825
PT+ + N R+ +S + +AL+ L F K FM AYLA ++++ +LS++ I SLK LSM
Sbjct: 273 PTTTCHTTDNALREAASPQMLALEELGFRKIFMVFAYLASEKIENVLSVDYIRSLKFLSM 332
Query: 824 GAVE-QLLRKKQRKKCGSNFQLDKKVLENEFWKDWNPDEDKDYDKNPNIFLQYHCYVDVN 648
E Q+ R K ++ D K+ D +P + YHC V +
Sbjct: 333 AQFESQIWRTFGHKYIAAS------------------DRAKNLDSDPGMTKVYHCNVAIR 374
Query: 647 GKYT---FKGPFAEQEKTHLHRVYGDSNVLRVHFAEELHDTKSYTPSNLEKEKFHWLAQN 477
G FKGP+ E +THL +V GD NVL V F +L DTK T + E +H +A++
Sbjct: 375 GDTVVKIFKGPYIENTRTHLQKVVGDDNVLVVKFMGKLSDTK--TDFSTYCEHYHKVAED 432
Query: 476 GIYIGRRKYLFFVYKEIDKREK---KVSKNKRNPTVSTKCYFVCITSFSIANKNMSRGMS 306
GI +G R+Y FFVYK+ K EK + ++K T CYFV + S N + +S
Sbjct: 433 GIVLGLRRYRFFVYKDGGKEEKLKQEKIEDKNKCTSPVMCYFV--RTESGWNMDEPYILS 490
Query: 305 RNPVQEARCQFMHIHNVATLPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIECIDENGN 126
V +AR FMHI + TL KYMARF+LILSKT D DLS V VR KD C+D +GN
Sbjct: 491 GRTVGQARELFMHISSAPTLAKYMARFALILSKTITWDADLSAVYVRRIKDEPCMDRHGN 550
Query: 125 AARDINGEVMIHTDGTGFISEDLA 54
+ E +IHTDGTG +S DLA
Sbjct: 551 VVHK-DQEPLIHTDGTGLVSVDLA 573
>gb|EEE54052.1| hypothetical protein OsJ_00745 [Oryza sativa Japonica Group]
Length = 1243
Score = 193 bits (490), Expect = 2e-46
Identities = 130/324 (40%), Positives = 177/324 (54%), Gaps = 7/324 (2%)
Frame = -1
Query: 1004 PTSRNCISKNCERQPSSEKAMALDNLAFPKAFMALAYLAQDELDELLSLNEINSLKMLSM 825
PT+ + N R+ +S + +AL+ L F K FM AYLA ++++ +LS++ I SLK LSM
Sbjct: 327 PTTTCHTTDNALREAASPQMLALEELGFRKIFMVFAYLASEKIENVLSVDYIRSLKFLSM 386
Query: 824 GAVE-QLLRKKQRKKCGSNFQLDKKVLENEFWKDWNPDEDKDYDKNPNIFLQYHCYVDVN 648
E Q+ R K ++ D K+ D +P + YHC V +
Sbjct: 387 AQFESQIWRTFGHKYIAAS------------------DRAKNLDSDPGMTKVYHCNVAIR 428
Query: 647 GKYT---FKGPFAEQEKTHLHRVYGDSNVLRVHFAEELHDTKSYTPSNLEKEKFHWLAQN 477
G FKGP+ E +THL +V GD NVL V F +L DTK T + E +H +A++
Sbjct: 429 GDTVVKIFKGPYIENTRTHLQKVVGDDNVLVVKFMGKLSDTK--TDFSTYCEHYHKVAED 486
Query: 476 GIYIGRRKYLFFVYKEIDKREK---KVSKNKRNPTVSTKCYFVCITSFSIANKNMSRGMS 306
GI +G R+Y FFVYK+ K EK + ++K T CYFV + S N + +S
Sbjct: 487 GIVLGLRRYRFFVYKDGGKEEKLKQEKIEDKNKCTSPVMCYFV--RTESGWNMDEPYILS 544
Query: 305 RNPVQEARCQFMHIHNVATLPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIECIDENGN 126
V +AR FMHI + TL KYMARF+LILSKT D DLS V VR KD C+D +GN
Sbjct: 545 GRTVGQARELFMHISSAPTLAKYMARFALILSKTITWDADLSAVYVRRIKDEPCMDRHGN 604
Query: 125 AARDINGEVMIHTDGTGFISEDLA 54
+ E +IHTDGTG +S DLA
Sbjct: 605 VVHK-DQEPLIHTDGTGLVSVDLA 627
>ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Capsella rubella]
gi|482565615|gb|EOA29804.1| hypothetical protein
CARUB_v10012898mg [Capsella rubella]
Length = 982
Score = 192 bits (488), Expect = 3e-46
Identities = 142/435 (32%), Positives = 207/435 (47%), Gaps = 2/435 (0%)
Frame = -1
Query: 1349 SERVEQMVKEIAAKHGIQPPDQRVKQELDALGEDRALSILIKVSKVSVP-IRNLSAYIKW 1173
S R+E + I +H + P + +Q L ++ E+ A ++ V + V I NL ++I
Sbjct: 20 SGRIEIALVNIYRQHNLTPINDETRQRLCSIPENLAFELVSDVLSLQVGVIYNLDSFIVS 79
Query: 1172 AIKNLNDXXXXXXXXXXXXXXXXXXXXTVHDNDNEVTSISIPNDGWEDESSCSTSMPTSR 993
+ H + +DE S + P+S+
Sbjct: 80 KVNQAVSVTGSQRLSSGGSSAQPRSPSGRH----------VCRVLDQDEMSVDSDAPSSK 129
Query: 992 NCISKNCERQPSSEKAMALDNLAFPKAFMALAYLAQDELDELLSLNEINSLKMLSMGAVE 813
+ ++ + +AL L F KAF+ L+Y+ L E+++ EI K L M A E
Sbjct: 130 SLQREDVGGTLHIPQLVALGELEFKKAFLLLSYIPGQRLGEVVTAEEIRRWKDLPMVAYE 189
Query: 812 QLLRKKQ-RKKCGSNFQLDKKVLENEFWKDWNPDEDKDYDKNPNIFLQYHCYVDVNGKYT 636
+ RK C Q D++VL+ W D K + Y C+V +G YT
Sbjct: 190 AAVWDSLGRKFCP---QTDERVLQ------W--DSGKTH--------YYQCHVAPDGSYT 230
Query: 635 FKGPFAEQEKTHLHRVYGDSNVLRVHFAEELHDTKSYTPSNLEKEKFHWLAQNGIYIGRR 456
FKGP E THLH+V GD NVL V FA ++ +Y + K +A+NGI +G R
Sbjct: 231 FKGPLLESTGTHLHKVLGDENVLTVKFANVQKNSSTYCSDSYFTYK--GIAKNGIMVGLR 288
Query: 455 KYLFFVYKEIDKREKKVSKNKRNPTVSTKCYFVCITSFSIANKNMSRGMSRNPVQEARCQ 276
+Y FFV+K+ K +K NK T KCYF+ S + + S + EAR
Sbjct: 289 RYKFFVFKDGGKDDK----NKDVSTKRAKCYFIRTDSTASIDMEKPYIFSGKSIHEARMH 344
Query: 275 FMHIHNVATLPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIECIDENGNAARDINGEVM 96
FMH+H + +L YMARFSLILSKT L+ DL+ V KDI C D++G D N +
Sbjct: 345 FMHVHTLPSLANYMARFSLILSKTKKLEVDLTGVNFEIIKDIPCHDQDGKDVLDKNKKPR 404
Query: 95 IHTDGTGFISEDLAE 51
IH+DGTG+ISEDLA+
Sbjct: 405 IHSDGTGYISEDLAQ 419
>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
RNA polymerase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 981
Score = 189 bits (480), Expect = 2e-45
Identities = 138/433 (31%), Positives = 207/433 (47%), Gaps = 1/433 (0%)
Frame = -1
Query: 1349 SERVEQMVKEIAAKHGIQPPDQRVKQELDALGEDRALSILIKVSKVSVPIRNLSAYIKWA 1170
S R+E ++ I K + P + +Q L ++ E+ + +RN+ +
Sbjct: 17 SGRIETALENIYRKFNLTPINDETRQRLSSIPENLGFEL----------VRNVFSLQAGL 66
Query: 1169 IKNLNDXXXXXXXXXXXXXXXXXXXXTVHDNDNEVTSISIPNDGWEDESSCSTSMPTSRN 990
I NL+ V ++ S ++E S + P+ ++
Sbjct: 67 IYNLDSFIVSKVNQAVNFTGYPRLSSGVSPANSRSPSGRHVCRVLQEEMSVDSDAPSPKS 126
Query: 989 CISKNCERQPSSEKAMALDNLAFPKAFMALAYLAQDELDELLSLNEINSLKMLSMGAVEQ 810
S+ + +AL L F KAF+ L+Y+ +L ++ + +EI K L M A E
Sbjct: 127 LKSEENGGSLHIPQLVALGELEFKKAFLLLSYIPGQQLGQVTTADEIRLWKDLPMVAYEA 186
Query: 809 LLRKKQ-RKKCGSNFQLDKKVLENEFWKDWNPDEDKDYDKNPNIFLQYHCYVDVNGKYTF 633
+ + R+ C Q D+++L+ W D K + Y C+V +G YTF
Sbjct: 187 AVWDRLGRRYCP---QTDRRMLQ------W--DSGKTH--------YYQCHVAPDGSYTF 227
Query: 632 KGPFAEQEKTHLHRVYGDSNVLRVHFAEELHDTKSYTPSNLEKEKFHWLAQNGIYIGRRK 453
KGP E THLH+V GD NVL V FA+ ++ +Y SN + +A+NGI IG R+
Sbjct: 228 KGPLLEHTGTHLHKVLGDENVLTVKFADVPKNSSTY--SNDRYFTYKEIAKNGIMIGLRR 285
Query: 452 YLFFVYKEIDKREKKVSKNKRNPTVSTKCYFVCITSFSIANKNMSRGMSRNPVQEARCQF 273
Y FFV+K+ K EKK K T KCYF+ S + + + + EAR F
Sbjct: 286 YQFFVFKDGGKEEKK----KDLSTKKVKCYFIRTDSTASCDMENPYIFTGKSIHEARMHF 341
Query: 272 MHIHNVATLPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIECIDENGNAARDINGEVMI 93
MH+H TL YMARFSLILSKT L+ D++ +T DI C D++G D N + I
Sbjct: 342 MHVHRAPTLANYMARFSLILSKTKTLEVDMTGITFDPIDDIHCHDQDGKDVLDKNKKPCI 401
Query: 92 HTDGTGFISEDLA 54
H+DGTG+ISEDLA
Sbjct: 402 HSDGTGYISEDLA 414
>ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
sativus]
Length = 1056
Score = 188 bits (477), Expect = 6e-45
Identities = 153/444 (34%), Positives = 209/444 (47%), Gaps = 15/444 (3%)
Frame = -1
Query: 1340 VEQMVKEIAAKHGIQPPDQRVKQELDALGEDRALSILIKVSKVSVPIRNLSAYIKWAIKN 1161
VEQ + I H PD V + L ++GE AL L K+S +V RNLS +I ++
Sbjct: 64 VEQFLLHICKLHDQPLPDTEVLRALASVGEVAALDALHKISCSTV--RNLSGFILHLVRK 121
Query: 1160 LNDXXXXXXXXXXXXXXXXXXXXTVHDNDNEVTSISIPNDGWEDESSCSTSMPTSRNCIS 981
V + ++ S S P + S+CS S+ S + S
Sbjct: 122 --------------DSCASPQNKMVRVSPHQSPSSSCPVSQLQSPSTCSVSLHQSPSTFS 167
Query: 980 KNCERQP--SSEKAMALDNLAFPKAFMALAYLAQDELDELLSLNEINSLKMLSMGAVEQL 807
C Q ++E A + + L + + + ++L E+ K+ L
Sbjct: 168 V-CSGQGLGTAENASLQPPTPEKSGSFSSSVLDRARISQFVALGELEFRKIT-------L 219
Query: 806 LRKKQRKKCGSNFQLDKKVLENEFWKDWNPDEDKDYDKNPNIFLQY-----------HCY 660
L+K+ G+ E W W + P+ +QY HC+
Sbjct: 220 LKKRPWLLYGNQV---------ERWLGWELVSVTHSESLPSYLVQYVDWDRRKTHIYHCH 270
Query: 659 VDVNGKYTFKGPFAEQEKTHLHRVYGDSNVLRVHFAEELHDTKSYTPSNLEKEKFHWLAQ 480
V ++G FKGPF KTHL RV GD NVL V FAE+ DT S + +A+
Sbjct: 271 VALDGSCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYSKIAR 330
Query: 479 NGIYIGRRKYLFFVYKEIDKREKKVSKNKRNPTVS-TKCYFVCITSFSIANKNMSRGMSR 303
+GI +G R+Y FFV+K+ K EK K+NPT S KCYFV + S + +K +S
Sbjct: 331 DGILLGLRRYHFFVFKDGGKEEK-----KKNPTTSAVKCYFVRMESDAYIDKIEPYKLSN 385
Query: 302 NPVQEARCQFMHIHNVATLPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIECIDENGNA 123
V EAR FMH H V+++ YMARFSLILSKT L DLS V V+ DI C D GN
Sbjct: 386 RTVFEARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNV 445
Query: 122 A-RDINGEVMIHTDGTGFISEDLA 54
RD G+ +IHTDGTGFISEDLA
Sbjct: 446 IYRD--GKPLIHTDGTGFISEDLA 467
>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
gi|550336519|gb|ERP59562.1| hypothetical protein
POPTR_0006s17780g [Populus trichocarpa]
Length = 866
Score = 187 bits (476), Expect = 7e-45
Identities = 118/312 (37%), Positives = 175/312 (56%), Gaps = 3/312 (0%)
Frame = -1
Query: 959 SSEKAMALDNLAFPKAFMALAYLAQDELDELLSLNEINSLKMLSMGAVEQLLRKKQRKKC 780
+S+ +AL L F KAF+ L YL L+E++S ++I K L M E K
Sbjct: 13 TSQHLVALGELEFRKAFLILNYLGGKNLEEVVSADQIRGYKDLPMETFES--------KI 64
Query: 779 GSNFQLDKKVLENEFWKDWNPDEDKDYDKNPNIFLQYHCYVDVNGKYTFKGPFAEQEKTH 600
F + ++ E D K D + YHC+VD +G Y FKGP+ +++
Sbjct: 65 WDAFGCRRDYIKEE-------DRVKYLDWDSGKAHIYHCHVDPDGSYRFKGPYLSKQRNV 117
Query: 599 LHRVYGDSNVLRVHFAEELHDTKSYTPSNLEK--EKFHWLAQNGIYIGRRKYLFFVYKEI 426
L R GD N+L V F EE+ D + S+L+ K++ + + GI++G R Y FFV+K+
Sbjct: 118 LQRTLGDDNILMVKF-EEVKDERYSVSSSLDNYFAKYNKVLREGIHVGLRCYRFFVFKDG 176
Query: 425 DKREKKVSKNKRNPTVS-TKCYFVCITSFSIANKNMSRGMSRNPVQEARCQFMHIHNVAT 249
K EKK ++PT S KC+FVC+ S + + N + +++AR FMH+ N+++
Sbjct: 177 GKEEKK-----KDPTTSPVKCFFVCMESVASVD-NQDNILCGKTIRQARSVFMHVDNLSS 230
Query: 248 LPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIECIDENGNAARDINGEVMIHTDGTGFI 69
L YMARFSLILSKT L+ DLS V ++ D C D++GNA +G+ +IHTDGTGFI
Sbjct: 231 LSNYMARFSLILSKTMNLEVDLSFVDIKPIADEPCRDKDGNAVYGTDGKPLIHTDGTGFI 290
Query: 68 SEDLAEKIQRSK 33
S DLA K +++
Sbjct: 291 SHDLALKCPKNQ 302
>ref|NP_179582.2| RNA-dependent RNA polymerase family protein [Arabidopsis thaliana]
gi|322967571|sp|O82189.2|RDR4_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 4;
Short=AtRDRP4; AltName: Full=RNA-directed RNA polymerase
4 gi|330251849|gb|AEC06943.1| RNA-dependent RNA
polymerase family protein [Arabidopsis thaliana]
Length = 927
Score = 187 bits (476), Expect = 7e-45
Identities = 148/458 (32%), Positives = 215/458 (46%), Gaps = 22/458 (4%)
Frame = -1
Query: 1361 ARMGSERVEQMVKEIAAKHGIQPPDQ-RVKQELDALGEDRALSILIKVSKVSVP-IRNLS 1188
A +GS VE M++++ KH PP + ++ L ++ E+ AL L KV +++P ++ L
Sbjct: 21 ALLGS--VETMLEKVYGKHNHHPPIKVETRRRLSSISEELALETLRKV--LNMPNVKTLD 76
Query: 1187 AYIKWAIKNLNDXXXXXXXXXXXXXXXXXXXXTVHDNDNEVTSISIPNDGWEDESSCS-T 1011
I + + N+ ++ W ES
Sbjct: 77 GIIIYFL-------------------------------NDAVTVDGSPRLWSGESPVQFP 105
Query: 1010 SMPTSRNCISKNCE----RQPSSEK---------------AMALDNLAFPKAFMALAYLA 888
P ++C + E R+ S K +AL L F KAF+ L YL
Sbjct: 106 RTPGKKSCRASQAEVSLDREDPSPKFLRGDENGESKHISLLLALGELEFKKAFLLLTYLG 165
Query: 887 QDELDELLSLNEINSLKMLSMGAVEQLLRKKQRKKCGSNFQLDKKVLENEFWKDWNPDED 708
L E++S +EI K L M A E+ + K + +NE D
Sbjct: 166 GKSLGEVISGDEIRQWKDLPMVAYERAVWFK--------------LGQNEERMQLESDSG 211
Query: 707 KDYDKNPNIFLQYHCYVDVNGKYTFKGPFAEQEKTHLHRVYGDSNVLRVHFAEELHDTKS 528
K + Y C+V +G Y KG F E THLH+V GD NVL V F ++L +
Sbjct: 212 KTH--------YYQCHVAPDGSYRLKGYFLENTGTHLHKVLGDDNVLTVRF-DQLPKEST 262
Query: 527 YTPSNLEKEKFHWLAQNGIYIGRRKYLFFVYKEIDKREKKVSKNKRNPTVSTKCYFVCIT 348
Y + K K +A+NGI +G R+Y FFV+K+ K EKK KRN T KCYF+
Sbjct: 263 YCDNPYSKYKE--IAKNGIMVGLRRYQFFVFKDGGKAEKK----KRNSTKQVKCYFIRTG 316
Query: 347 SFSIANKNMSRGMSRNPVQEARCQFMHIHNVATLPKYMARFSLILSKTTPLDYDLSDVTV 168
S + ++ +S + EAR FMH+H + + YMARFSLILSKT L+ D++++TV
Sbjct: 317 STASSDMENPYILSGMSIHEARMHFMHVHTLPSPANYMARFSLILSKTKKLEVDMTEITV 376
Query: 167 RFEKDIECIDENGNAARDINGEVMIHTDGTGFISEDLA 54
DI C D++ N D NG+ IH+DGTG+ISEDLA
Sbjct: 377 MQIDDIHCHDQSNNDVLDKNGKPRIHSDGTGYISEDLA 414
>ref|XP_002883964.1| hypothetical protein ARALYDRAFT_319567 [Arabidopsis lyrata subsp.
lyrata] gi|297329804|gb|EFH60223.1| hypothetical protein
ARALYDRAFT_319567 [Arabidopsis lyrata subsp. lyrata]
Length = 893
Score = 187 bits (475), Expect = 9e-45
Identities = 146/467 (31%), Positives = 219/467 (46%), Gaps = 11/467 (2%)
Frame = -1
Query: 1379 ELIIAGARMGSERVEQMVKEIAAKHGIQPPDQ-RVKQELDALGEDRALSILIKVSKVSVP 1203
E+++ G+ VE M+++I KH PP + +++L ++ E+ AL L KV +
Sbjct: 15 EIVLLGS------VETMLEKIYGKHNHHPPIKVETRRKLSSISEELALETLRKVLNMEY- 67
Query: 1202 IRNLSAYIKWAIKNLNDXXXXXXXXXXXXXXXXXXXXTVHDNDNEVTSISIPNDGWEDES 1023
++ L I + + N + ++ + S + P + E
Sbjct: 68 VKTLDGIIMYFVNNA---------------ATVDGSPRLSSGESPLQSPTTPG---KKEV 109
Query: 1022 SCSTSMPTSRNCISKNCERQPSSEKAMALDNLAFPKAFMALAYLAQDE------LDELLS 861
S P+ + R +AL L F KAF+ L YL D L E++S
Sbjct: 110 SLDGEDPSPKFLRRDETGRTNHIPPLVALGELEFKKAFLLLTYLGGDRFCYRKSLGEVIS 169
Query: 860 LNEINSLKMLSMGAVEQLLRKKQRKKCGSNFQLDKKVLENEFWKDWNPDEDKDYDKNPNI 681
+EI K L M A E + K + +NE D K +
Sbjct: 170 GDEIRQWKDLPMVAYESAVWFK--------------LGQNEQRISLESDSGKTH------ 209
Query: 680 FLQYHCYVDVNGKYTFKGPFAEQEKTHLHRVYGDSNVLRVHFAEELHDTKSYTPSNLEKE 501
Y C+V +G Y FKG E THLH+V GD NVL V F ++L +Y K
Sbjct: 210 --YYQCHVTPDGSYRFKGYLLENTGTHLHKVLGDDNVLTVKF-DQLPKESTYCNDPYSKH 266
Query: 500 KFHWLAQNGIYIGRRKYLFFVYKEIDKREKKVSKNKRNPTVSTKCYFVCITSFSIANKNM 321
K +A+NGI +G R+Y FV+K+ K EKK KRN T KCYF+ + S + ++
Sbjct: 267 KE--IAKNGIMVGLRRYQIFVFKDGGKAEKK----KRNSTKQVKCYFIRMDSTASSDMEN 320
Query: 320 SRGMSRNPVQEARCQFMHIHNVATLPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIECI 141
++ + EAR FMH+H + + YMARFSLILSKT L+ D++ +TV+ DI C
Sbjct: 321 PYILAGMSIHEARMHFMHVHTLPSPANYMARFSLILSKTKKLEVDMTGITVKQIDDIHCH 380
Query: 140 DENGNAARDINGEVMIHTDGTGFISEDLAE----KIQRSKNPSCEVL 12
D++ N D NG+ IH+DGTG+ISEDLA I + KN +++
Sbjct: 381 DQSNNDVLDKNGKPRIHSDGTGYISEDLARMCPVNIFKGKNIKSDII 427
>ref|XP_006645607.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA-dependent RNA polymerase
3-like [Oryza brachyantha]
Length = 1109
Score = 187 bits (474), Expect = 1e-44
Identities = 126/316 (39%), Positives = 172/316 (54%), Gaps = 5/316 (1%)
Frame = -1
Query: 968 RQPSSEKAMALDNLAFPKAFMALAYLAQDELDELLSLNEINSLKMLSMGAVEQLLRKKQR 789
R S + +AL+ L F K FM AYL ++++ +LS++ I SL + M
Sbjct: 238 RDSVSPQMLALEELEFKKIFMIFAYLGCNKIETVLSVDYIRSLXFMPMA----------- 286
Query: 788 KKCGSNFQLDKKVLENEFWKDWN-PDEDKDYDKNPNIFLQYHCYVDVNGKYT---FKGPF 621
Q + K+ +K+ D K+ D +P YHC V++ G FKGP+
Sbjct: 287 -------QFESKIWRTFGYKNIAVSDRAKNLDSDPLTTKVYHCNVEIRGDSVVTLFKGPY 339
Query: 620 AEQEKTHLHRVYGDSNVLRVHFAEELHDTKSYTPSNLEKEKFHWLAQNGIYIGRRKYLFF 441
+THL +V GD NVL V F E+L +TK T + E +H +A +GI +G R+Y FF
Sbjct: 340 IGNTRTHLQKVVGDDNVLVVKFMEKLSETK--TDFSTYCEHYHKVANDGILLGLRRYQFF 397
Query: 440 VYKEIDKREKKVSKNKRNPTVSTKCYFVCITSFSIANKNMSRGMSRNPVQEARCQFMHIH 261
+YK+ K +K + KRN + + +CYFV + S N + +S V +AR FMHI+
Sbjct: 398 IYKDGGKEKKMIEGEKRNSSSTVRCYFV--RTESGWNTDEPYILSGKTVGQARELFMHIN 455
Query: 260 NVATLPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIECIDENGNAA-RDINGEVMIHTD 84
TL KYMAR +LILSKT LD DLS V VR D C+DE+GN RD GE +I TD
Sbjct: 456 TAPTLAKYMARLALILSKTITLDADLSQVLVRL-IDEPCLDEHGNVVLRD--GEPLIRTD 512
Query: 83 GTGFISEDLAEKIQRS 36
GTG ISEDLA K S
Sbjct: 513 GTGLISEDLALKCPTS 528
>gb|ESW24973.1| hypothetical protein PHAVU_004G1764001g, partial [Phaseolus vulgaris]
Length = 689
Score = 186 bits (471), Expect = 3e-44
Identities = 148/430 (34%), Positives = 206/430 (47%), Gaps = 1/430 (0%)
Frame = -1
Query: 1340 VEQMVKEIAAKHGIQPPDQRVKQELDALGEDRALSILIKVSKVSVPIRNLSAYIKWAIKN 1161
VE ++ I PPD ++Q L A+GE +AL IL +++ + I +LSA+I + +KN
Sbjct: 18 VEALINTICHDQNQLPPDFIIRQGLAAVGEQQALQILRTIAERPIRI-SLSAFIAYMLKN 76
Query: 1160 LNDXXXXXXXXXXXXXXXXXXXXTVHDNDNEVTSISIPNDGWEDESSCSTSMPTSRNCIS 981
VTS S+ STS S
Sbjct: 77 ----------------------------HRTVTS-----------STPSTSSTPSTPLTP 97
Query: 980 KNCERQPSSEKAMALDNLAFPKAFMALAYLAQDELDELLSLNEINSLKMLSMGAVEQLLR 801
+S AL + F KAF+ L+Y+ ++ L+ + S + I SLK L M E+ +
Sbjct: 98 SPTRPGQTSSALHALGEMEFRKAFLCLSYIGRESLENVASADCIRSLKDLPMATFEKTIW 157
Query: 800 KKQRKKCGSNFQLDKKVLENEFWKDWNPDEDKDYDKNPNIFLQYHCYVDVNGKYTFKGPF 621
+ K + Q D++V + DW+ Y CYV +G FKGP
Sbjct: 158 EAFGKDHIYS-QSDRQV-----YVDWDSGRTH----------VYQCYVSSDGSLRFKGPI 201
Query: 620 AEQEKTHLHRVYGDSNVLRVHFAEELHDTKSYTPSNLEKEKFHWLAQNGIYIGRRKYLFF 441
+ +THL R GD NVL V FAE T + + + GI +G R Y FF
Sbjct: 202 LQSTQTHLQRSLGDDNVLLVKFAENGIANNIRTSAEEAYRLYGKFGKEGINVGLRLYRFF 261
Query: 440 VYKEIDKREKKVSKNKRNPTVST-KCYFVCITSFSIANKNMSRGMSRNPVQEARCQFMHI 264
V+K+ K EKK ++PT S+ KCYFV + S + + + +S V EAR FMH
Sbjct: 262 VFKDGGKEEKK-----KDPTSSSVKCYFVRMQSCWSIDGSANYILSNKTVSEARGLFMHA 316
Query: 263 HNVATLPKYMARFSLILSKTTPLDYDLSDVTVRFEKDIECIDENGNAARDINGEVMIHTD 84
H + +L KYMARFSLILSKT L+ DL+ V V+ +D+ C DENGN D N + I TD
Sbjct: 317 HLLPSLDKYMARFSLILSKTFKLNIDLATVNVQTIQDVYCQDENGNIIYD-NEKPRILTD 375
Query: 83 GTGFISEDLA 54
GTGFIS DLA
Sbjct: 376 GTGFISGDLA 385