BLASTX nr result
ID: Ephedra25_contig00003670
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra25_contig00003670
(2312 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_001770727.1| predicted protein [Physcomitrella patens] gi... 182 6e-43
ref|XP_005842382.1| hypothetical protein GUITHDRAFT_83772 [Guill... 79 9e-12
gb|ETW03462.1| hypothetical protein, variant [Aphanomyces invadans] 79 1e-11
gb|ETW03461.1| hypothetical protein H310_04918 [Aphanomyces inva... 79 1e-11
gb|ELW70170.1| DNA polymerase sigma [Tupaia chinensis] 78 2e-11
gb|ETV85174.1| hypothetical protein, variant 2 [Aphanomyces asta... 77 4e-11
gb|ETV85173.1| hypothetical protein, variant 1 [Aphanomyces astaci] 77 4e-11
gb|ETV85172.1| hypothetical protein H257_03008 [Aphanomyces astaci] 77 4e-11
ref|XP_006517250.1| PREDICTED: DNA polymerase sigma isoform X3 [... 77 4e-11
ref|XP_006517249.1| PREDICTED: DNA polymerase sigma isoform X2 [... 77 4e-11
ref|XP_006517248.1| PREDICTED: DNA polymerase sigma isoform X1 [... 77 4e-11
ref|XP_005248291.1| PREDICTED: DNA polymerase sigma isoform X1 [... 77 4e-11
sp|Q5XG87.3|PAPD7_HUMAN RecName: Full=Non-canonical poly(A) RNA ... 77 4e-11
gb|AAD45198.1|AF089896_1 topoisomerase-related function protein ... 77 4e-11
ref|XP_003899535.1| PREDICTED: DNA polymerase sigma [Papio anubis] 77 4e-11
ref|XP_003800943.1| PREDICTED: DNA polymerase sigma [Otolemur ga... 77 4e-11
ref|XP_006143387.1| PREDICTED: DNA polymerase sigma [Tupaia chin... 75 1e-10
ref|XP_006806722.1| PREDICTED: DNA polymerase sigma-like isoform... 75 1e-10
ref|XP_006806721.1| PREDICTED: DNA polymerase sigma-like isoform... 75 1e-10
gb|ETP31939.1| hypothetical protein F442_19262 [Phytophthora par... 75 1e-10
>ref|XP_001770727.1| predicted protein [Physcomitrella patens] gi|162677945|gb|EDQ64409.1|
predicted protein [Physcomitrella patens]
Length = 1560
Score = 182 bits (462), Expect = 6e-43
Identities = 144/448 (32%), Positives = 203/448 (45%), Gaps = 74/448 (16%)
Frame = +1
Query: 1147 PAAEF--NLYGLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFA 1320
P+ +F N+ LH EILE+A P+ E + EAA++CVR AVK LWP D+EV+GS+A
Sbjct: 1028 PSQQFLTNVEELHSEILEFAHTASPSAEARSCAEAAIDCVRGAVKKLWPNADVEVFGSYA 1087
Query: 1321 TGLCLSKSDVDLLVVNEXXXXXXXXETSGRPPQL--------ITVLGDHIRKYPWCKSLM 1476
TGLCLS SDVD++VV+ T +L I +LG ++ Y WCKS+
Sbjct: 1088 TGLCLSHSDVDVVVVDAPPPLKLPDTTGLTGTRLVASLLAPSIRLLGAALQDYDWCKSIR 1147
Query: 1477 TVENAPIPVIKLNCKPQINGEECKEEDSDNVVAIDITIQG---NTEV------------- 1608
T+++A +PVIKL C+P + + + VV IDITI G N E
Sbjct: 1148 TIDSATMPVIKLQCRPLVT----SLDPAAPVVKIDITIGGKKTNEEAVATASQSSEGSET 1203
Query: 1609 -------YKEKRYCHTGVQAREFVLHKLKQFXXXXXXXXXXXXXXXXXXXNNVXXXXXXX 1767
++ R H G ARE+V+ +L+Q +V
Sbjct: 1204 SRHVDSQFELARKFHNGAAAREYVIKRLQQQPALAPLVLLLKSYLQSKGLKDVYTGGLGS 1263
Query: 1768 XXXXXXXXFFLEHVLEPYLCLRRSQ---ESVEDNYALGQDTSNMP-------------LK 1899
F+LE V P C+ + +S+ + AL TS+ L
Sbjct: 1264 FSLTIMLVFYLERV--PISCVTSQEVRAQSLAPSNALVSSTSSPDITNLTSAPPGIDFLG 1321
Query: 1900 SEEHPSLCSSKEDSETAIDSRKFC---------YNGGTTIRN----------------AI 2004
S E S CS+ ++ +R NG T +
Sbjct: 1322 SCEEESSCSTTTTDSVSVSNRASASCSTSEGSLVNGATAAGHIQLTGDVSKSGRCNQWTG 1381
Query: 2005 NVIEKQLEHNEVSGSLNLGALLISFLHYYTICMDFRRVRIVLQGRDGSRGGLYWQDESQH 2184
+IE+ L S NLG LLI FL + +DF +VR+V +G GS GGL++ D++
Sbjct: 1382 GIIEQLLASMHYVASPNLGTLLIGFLQIFGWAIDFTQVRLVTKGNGGS-GGLFYHDKTS- 1439
Query: 2185 HPFALWIDDPLRPGVNVGAGSYAMCHVQ 2268
P L IDDPLRPG N+GAGS+ M VQ
Sbjct: 1440 SPAPLTIDDPLRPGANIGAGSFNMHQVQ 1467
>ref|XP_005842382.1| hypothetical protein GUITHDRAFT_83772 [Guillardia theta CCMP2712]
gi|428186552|gb|EKX55402.1| hypothetical protein
GUITHDRAFT_83772 [Guillardia theta CCMP2712]
Length = 440
Score = 79.0 bits (193), Expect = 9e-12
Identities = 42/114 (36%), Positives = 59/114 (51%)
Frame = +1
Query: 1174 LHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDVD 1353
LH EI+E V P T R + V+ V +AVKS W +EVYGSF+T L L SDVD
Sbjct: 97 LHSEIVELLNQVYPTNSTRTRRQRIVDLVDEAVKSCWEGAHVEVYGSFSTDLYLPHSDVD 156
Query: 1354 LLVVNEXXXXXXXXETSGRPPQLITVLGDHIRKYPWCKSLMTVENAPIPVIKLN 1515
+LV+ + L ++ PWC+ + ++EN +PVIKL+
Sbjct: 157 VLVIGAKEWSI---------ESKMKHLASRLKSMPWCRYMRSIENTSVPVIKLS 201
>gb|ETW03462.1| hypothetical protein, variant [Aphanomyces invadans]
Length = 540
Score = 78.6 bits (192), Expect = 1e-11
Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 1/163 (0%)
Frame = +1
Query: 1174 LHDEILEYARMVKPN-QETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDV 1350
LH EI+EYAR + E +E +E VR +V+ LWP +E YGS++TG+ L SD+
Sbjct: 63 LHQEIVEYARYTRAIVSEMAVHIEKTIELVRTSVRKLWPEATVETYGSYSTGIWLPSSDI 122
Query: 1351 DLLVVNEXXXXXXXXETSGRPPQLITVLGDHIRKYPWCKSLMTVENAPIPVIKLNCKPQI 1530
DL+++ TS + L ++ W +S++ VE+A +P++KL
Sbjct: 123 DLVILG----------TSDDASANLKRLAASLKHEKWVESILLVESAKVPLLKL------ 166
Query: 1531 NGEECKEEDSDNVVAIDITIQGNTEVYKEKRYCHTGVQAREFV 1659
+D+ V IDIT E H+G+ AR+ +
Sbjct: 167 -------VSTDSSVPIDITF--------ESANTHSGLLARDLI 194
>gb|ETW03461.1| hypothetical protein H310_04918 [Aphanomyces invadans]
Length = 580
Score = 78.6 bits (192), Expect = 1e-11
Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 1/163 (0%)
Frame = +1
Query: 1174 LHDEILEYARMVKPN-QETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDV 1350
LH EI+EYAR + E +E +E VR +V+ LWP +E YGS++TG+ L SD+
Sbjct: 103 LHQEIVEYARYTRAIVSEMAVHIEKTIELVRTSVRKLWPEATVETYGSYSTGIWLPSSDI 162
Query: 1351 DLLVVNEXXXXXXXXETSGRPPQLITVLGDHIRKYPWCKSLMTVENAPIPVIKLNCKPQI 1530
DL+++ TS + L ++ W +S++ VE+A +P++KL
Sbjct: 163 DLVILG----------TSDDASANLKRLAASLKHEKWVESILLVESAKVPLLKL------ 206
Query: 1531 NGEECKEEDSDNVVAIDITIQGNTEVYKEKRYCHTGVQAREFV 1659
+D+ V IDIT E H+G+ AR+ +
Sbjct: 207 -------VSTDSSVPIDITF--------ESANTHSGLLARDLI 234
>gb|ELW70170.1| DNA polymerase sigma [Tupaia chinensis]
Length = 729
Score = 77.8 bits (190), Expect = 2e-11
Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 2/172 (1%)
Frame = +1
Query: 1171 GLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDV 1350
GLH+EI+++ + P E A V+ + VK LWPA D++++GSF+TGL L SD+
Sbjct: 56 GLHEEIIDFYNFMSPCPEEAAMRREVVKRIETVVKDLWPAADVQIFGSFSTGLYLPTSDI 115
Query: 1351 DLLVVNEXXXXXXXXETSGRPPQLITVLGDHIRKYPWCK--SLMTVENAPIPVIKLNCKP 1524
DL+V + RPP + +L +RK+ + S+ ++ A +P+IKL
Sbjct: 116 DLVVFGKWE----------RPP--LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLT--- 160
Query: 1525 QINGEECKEEDSDNVVAIDITIQGNTEVYKEKRYCHTGVQAREFVLHKLKQF 1680
D + V +DI+ TGV+A EF+ + +K++
Sbjct: 161 ----------DQETEVKVDISFN-----------METGVRAAEFIKNYMKKY 191
>gb|ETV85174.1| hypothetical protein, variant 2 [Aphanomyces astaci]
gi|574119696|gb|ETV85175.1| hypothetical protein, variant
3 [Aphanomyces astaci]
Length = 470
Score = 76.6 bits (187), Expect = 4e-11
Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 1/163 (0%)
Frame = +1
Query: 1174 LHDEILEYARMVKPN-QETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDV 1350
LH EI++YAR + E +E ++ VR +V+ LWP +E YGS++TG+ L SD+
Sbjct: 4 LHQEIVDYARYTRAIVSEMAVHIEKTIDLVRASVRKLWPDATVETYGSYSTGIWLPSSDI 63
Query: 1351 DLLVVNEXXXXXXXXETSGRPPQLITVLGDHIRKYPWCKSLMTVENAPIPVIKLNCKPQI 1530
DL+++ TS + L ++ W +S++ VE+A +P++KL
Sbjct: 64 DLVILG----------TSDDASSHLKCLAASLKHEKWVESILLVESAKVPLLKL------ 107
Query: 1531 NGEECKEEDSDNVVAIDITIQGNTEVYKEKRYCHTGVQAREFV 1659
+D+ V IDIT E H+G+ AR+ +
Sbjct: 108 -------VSTDSSVPIDITF--------ETANTHSGLLARDLI 135
>gb|ETV85173.1| hypothetical protein, variant 1 [Aphanomyces astaci]
Length = 490
Score = 76.6 bits (187), Expect = 4e-11
Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 1/163 (0%)
Frame = +1
Query: 1174 LHDEILEYARMVKPN-QETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDV 1350
LH EI++YAR + E +E ++ VR +V+ LWP +E YGS++TG+ L SD+
Sbjct: 24 LHQEIVDYARYTRAIVSEMAVHIEKTIDLVRASVRKLWPDATVETYGSYSTGIWLPSSDI 83
Query: 1351 DLLVVNEXXXXXXXXETSGRPPQLITVLGDHIRKYPWCKSLMTVENAPIPVIKLNCKPQI 1530
DL+++ TS + L ++ W +S++ VE+A +P++KL
Sbjct: 84 DLVILG----------TSDDASSHLKCLAASLKHEKWVESILLVESAKVPLLKL------ 127
Query: 1531 NGEECKEEDSDNVVAIDITIQGNTEVYKEKRYCHTGVQAREFV 1659
+D+ V IDIT E H+G+ AR+ +
Sbjct: 128 -------VSTDSSVPIDITF--------ETANTHSGLLARDLI 155
>gb|ETV85172.1| hypothetical protein H257_03008 [Aphanomyces astaci]
Length = 575
Score = 76.6 bits (187), Expect = 4e-11
Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 1/163 (0%)
Frame = +1
Query: 1174 LHDEILEYARMVKPN-QETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDV 1350
LH EI++YAR + E +E ++ VR +V+ LWP +E YGS++TG+ L SD+
Sbjct: 109 LHQEIVDYARYTRAIVSEMAVHIEKTIDLVRASVRKLWPDATVETYGSYSTGIWLPSSDI 168
Query: 1351 DLLVVNEXXXXXXXXETSGRPPQLITVLGDHIRKYPWCKSLMTVENAPIPVIKLNCKPQI 1530
DL+++ TS + L ++ W +S++ VE+A +P++KL
Sbjct: 169 DLVILG----------TSDDASSHLKCLAASLKHEKWVESILLVESAKVPLLKL------ 212
Query: 1531 NGEECKEEDSDNVVAIDITIQGNTEVYKEKRYCHTGVQAREFV 1659
+D+ V IDIT E H+G+ AR+ +
Sbjct: 213 -------VSTDSSVPIDITF--------ETANTHSGLLARDLI 240
>ref|XP_006517250.1| PREDICTED: DNA polymerase sigma isoform X3 [Mus musculus]
Length = 732
Score = 76.6 bits (187), Expect = 4e-11
Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 2/174 (1%)
Frame = +1
Query: 1165 LYGLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKS 1344
+ GLH+EI+++ + P E A V+ + VK LWP D++++GSF+TGL L S
Sbjct: 230 IQGLHEEIIDFYNFMSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTS 289
Query: 1345 DVDLLVVNEXXXXXXXXETSGRPPQLITVLGDHIRKYPWCK--SLMTVENAPIPVIKLNC 1518
D+DL+V + RPP + +L +RK+ + S+ ++ A +P+IKL
Sbjct: 290 DIDLVVFGKWE----------RPP--LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLT- 336
Query: 1519 KPQINGEECKEEDSDNVVAIDITIQGNTEVYKEKRYCHTGVQAREFVLHKLKQF 1680
D + V +DI+ TGV+A EF+ + +K++
Sbjct: 337 ------------DQETEVKVDISFN-----------METGVRAAEFIKNYMKKY 367
>ref|XP_006517249.1| PREDICTED: DNA polymerase sigma isoform X2 [Mus musculus]
Length = 784
Score = 76.6 bits (187), Expect = 4e-11
Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 2/174 (1%)
Frame = +1
Query: 1165 LYGLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKS 1344
+ GLH+EI+++ + P E A V+ + VK LWP D++++GSF+TGL L S
Sbjct: 230 IQGLHEEIIDFYNFMSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTS 289
Query: 1345 DVDLLVVNEXXXXXXXXETSGRPPQLITVLGDHIRKYPWCK--SLMTVENAPIPVIKLNC 1518
D+DL+V + RPP + +L +RK+ + S+ ++ A +P+IKL
Sbjct: 290 DIDLVVFGKWE----------RPP--LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLT- 336
Query: 1519 KPQINGEECKEEDSDNVVAIDITIQGNTEVYKEKRYCHTGVQAREFVLHKLKQF 1680
D + V +DI+ TGV+A EF+ + +K++
Sbjct: 337 ------------DQETEVKVDISFN-----------METGVRAAEFIKNYMKKY 367
>ref|XP_006517248.1| PREDICTED: DNA polymerase sigma isoform X1 [Mus musculus]
Length = 785
Score = 76.6 bits (187), Expect = 4e-11
Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 2/174 (1%)
Frame = +1
Query: 1165 LYGLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKS 1344
+ GLH+EI+++ + P E A V+ + VK LWP D++++GSF+TGL L S
Sbjct: 230 IQGLHEEIIDFYNFMSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTS 289
Query: 1345 DVDLLVVNEXXXXXXXXETSGRPPQLITVLGDHIRKYPWCK--SLMTVENAPIPVIKLNC 1518
D+DL+V + RPP + +L +RK+ + S+ ++ A +P+IKL
Sbjct: 290 DIDLVVFGKWE----------RPP--LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLT- 336
Query: 1519 KPQINGEECKEEDSDNVVAIDITIQGNTEVYKEKRYCHTGVQAREFVLHKLKQF 1680
D + V +DI+ TGV+A EF+ + +K++
Sbjct: 337 ------------DQETEVKVDISFN-----------METGVRAAEFIKNYMKKY 367
>ref|XP_005248291.1| PREDICTED: DNA polymerase sigma isoform X1 [Homo sapiens]
Length = 792
Score = 76.6 bits (187), Expect = 4e-11
Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 2/174 (1%)
Frame = +1
Query: 1165 LYGLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKS 1344
+ GLH+EI+++ + P E A V+ + VK LWP D++++GSF+TGL L S
Sbjct: 237 IQGLHEEIIDFYNFMSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTS 296
Query: 1345 DVDLLVVNEXXXXXXXXETSGRPPQLITVLGDHIRKYPWCK--SLMTVENAPIPVIKLNC 1518
D+DL+V + RPP + +L +RK+ + S+ ++ A +P+IKL
Sbjct: 297 DIDLVVFGKWE----------RPP--LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLT- 343
Query: 1519 KPQINGEECKEEDSDNVVAIDITIQGNTEVYKEKRYCHTGVQAREFVLHKLKQF 1680
D + V +DI+ TGV+A EF+ + +K++
Sbjct: 344 ------------DQETEVKVDISFN-----------METGVRAAEFIKNYMKKY 374
>sp|Q5XG87.3|PAPD7_HUMAN RecName: Full=Non-canonical poly(A) RNA polymerase PAPD7; AltName:
Full=DNA polymerase sigma; AltName: Full=LAK-1; AltName:
Full=PAP-associated domain-containing protein 7; AltName:
Full=TRAMP-like complex polyadenylate polymerase;
AltName: Full=Terminal uridylyltransferase 5;
Short=TUTase 5; AltName: Full=Topoisomerase-related
function protein 4-1; Short=TRF4-1
gi|449326076|gb|AGE92663.1| PAPD7 [Homo sapiens]
Length = 772
Score = 76.6 bits (187), Expect = 4e-11
Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 2/174 (1%)
Frame = +1
Query: 1165 LYGLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKS 1344
+ GLH+EI+++ + P E A V+ + VK LWP D++++GSF+TGL L S
Sbjct: 217 IQGLHEEIIDFYNFMSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTS 276
Query: 1345 DVDLLVVNEXXXXXXXXETSGRPPQLITVLGDHIRKYPWCK--SLMTVENAPIPVIKLNC 1518
D+DL+V + RPP + +L +RK+ + S+ ++ A +P+IKL
Sbjct: 277 DIDLVVFGKWE----------RPP--LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLT- 323
Query: 1519 KPQINGEECKEEDSDNVVAIDITIQGNTEVYKEKRYCHTGVQAREFVLHKLKQF 1680
D + V +DI+ TGV+A EF+ + +K++
Sbjct: 324 ------------DQETEVKVDISFN-----------METGVRAAEFIKNYMKKY 354
>gb|AAD45198.1|AF089896_1 topoisomerase-related function protein [Homo sapiens]
Length = 517
Score = 76.6 bits (187), Expect = 4e-11
Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 2/174 (1%)
Frame = +1
Query: 1165 LYGLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKS 1344
+ GLH+EI+++ + P E A V+ + VK LWP D++++GSF+TGL L S
Sbjct: 27 IQGLHEEIIDFYNFMSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTS 86
Query: 1345 DVDLLVVNEXXXXXXXXETSGRPPQLITVLGDHIRKYPWCK--SLMTVENAPIPVIKLNC 1518
D+DL+V + RPP + +L +RK+ + S+ ++ A +P+IKL
Sbjct: 87 DIDLVVFGKWE----------RPP--LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLT- 133
Query: 1519 KPQINGEECKEEDSDNVVAIDITIQGNTEVYKEKRYCHTGVQAREFVLHKLKQF 1680
D + V +DI+ TGV+A EF+ + +K++
Sbjct: 134 ------------DQETEVKVDISFN-----------METGVRAAEFIKNYMKKY 164
>ref|XP_003899535.1| PREDICTED: DNA polymerase sigma [Papio anubis]
Length = 775
Score = 76.6 bits (187), Expect = 4e-11
Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 2/174 (1%)
Frame = +1
Query: 1165 LYGLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKS 1344
+ GLH+EI+++ + P E A V+ + VK LWP D++++GSF+TGL L S
Sbjct: 220 IQGLHEEIIDFYNFMSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTS 279
Query: 1345 DVDLLVVNEXXXXXXXXETSGRPPQLITVLGDHIRKYPWCK--SLMTVENAPIPVIKLNC 1518
D+DL+V + RPP + +L +RK+ + S+ ++ A +P+IKL
Sbjct: 280 DIDLVVFGKWE----------RPP--LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLT- 326
Query: 1519 KPQINGEECKEEDSDNVVAIDITIQGNTEVYKEKRYCHTGVQAREFVLHKLKQF 1680
D + V +DI+ TGV+A EF+ + +K++
Sbjct: 327 ------------DQETEVKVDISFN-----------METGVRAAEFIKNYMKKY 357
>ref|XP_003800943.1| PREDICTED: DNA polymerase sigma [Otolemur garnettii]
Length = 837
Score = 76.6 bits (187), Expect = 4e-11
Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 2/174 (1%)
Frame = +1
Query: 1165 LYGLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKS 1344
+ GLH+EI+++ + P E A V+ + VK LWP D++++GSF+TGL L S
Sbjct: 282 IQGLHEEIIDFYNFMSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTS 341
Query: 1345 DVDLLVVNEXXXXXXXXETSGRPPQLITVLGDHIRKYPWCK--SLMTVENAPIPVIKLNC 1518
D+DL+V + RPP + +L +RK+ + S+ ++ A +P+IKL
Sbjct: 342 DIDLVVFGKWE----------RPP--LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLT- 388
Query: 1519 KPQINGEECKEEDSDNVVAIDITIQGNTEVYKEKRYCHTGVQAREFVLHKLKQF 1680
D + V +DI+ TGV+A EF+ + +K++
Sbjct: 389 ------------DQETEVKVDISFN-----------METGVRAAEFIKNYMKKY 419
>ref|XP_006143387.1| PREDICTED: DNA polymerase sigma [Tupaia chinensis]
Length = 565
Score = 75.5 bits (184), Expect = 1e-10
Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 2/171 (1%)
Frame = +1
Query: 1174 LHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDVD 1353
LH+EI+++ + P E A V+ + VK LWPA D++++GSF+TGL L SD+D
Sbjct: 13 LHEEIIDFYNFMSPCPEEAAMRREVVKRIETVVKDLWPAADVQIFGSFSTGLYLPTSDID 72
Query: 1354 LLVVNEXXXXXXXXETSGRPPQLITVLGDHIRKYPWCK--SLMTVENAPIPVIKLNCKPQ 1527
L+V + RPP + +L +RK+ + S+ ++ A +P+IKL
Sbjct: 73 LVVFGKWE----------RPP--LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLT---- 116
Query: 1528 INGEECKEEDSDNVVAIDITIQGNTEVYKEKRYCHTGVQAREFVLHKLKQF 1680
D + V +DI+ TGV+A EF+ + +K++
Sbjct: 117 ---------DQETEVKVDISFN-----------METGVRAAEFIKNYMKKY 147
>ref|XP_006806722.1| PREDICTED: DNA polymerase sigma-like isoform X2 [Neolamprologus
brichardi]
Length = 777
Score = 75.1 bits (183), Expect = 1e-10
Identities = 56/217 (25%), Positives = 97/217 (44%), Gaps = 2/217 (0%)
Frame = +1
Query: 1036 RKPDSNSSQHNLTRSSSMNFNYTINPGISSVPMYNFFPAAEFNLYGLHDEILEYARMVKP 1215
RK D+ +S + + S S N + ++ P + GLH+E++++ + + P
Sbjct: 232 RKSDNKASTYGMNYSISNCTNGNYASTCTPWKTRDYSPG----VLGLHEEVMDFYKYISP 287
Query: 1216 NQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDVDLLVVNEXXXXXXXX 1395
E A + V + +K LWP D+++YGSF+TGL L SD+DL+V +
Sbjct: 288 RPEEAAMRKEVVNRIEVVIKELWPTVDVQIYGSFSTGLYLPTSDIDLMVTGKWE------ 341
Query: 1396 ETSGRPPQLITVLGDHIRKYPWC--KSLMTVENAPIPVIKLNCKPQINGEECKEEDSDNV 1569
RPP + L +RK+ S+ ++ A +P+IKL +D
Sbjct: 342 ----RPP--LQELEQALRKHEVADPNSIKVLDKATVPIIKL---------------TDQR 380
Query: 1570 VAIDITIQGNTEVYKEKRYCHTGVQAREFVLHKLKQF 1680
+ + I N E TGV+A F+ +K++
Sbjct: 381 TDVKVDISFNVE---------TGVKAASFIKGYMKKY 408
>ref|XP_006806721.1| PREDICTED: DNA polymerase sigma-like isoform X1 [Neolamprologus
brichardi]
Length = 817
Score = 75.1 bits (183), Expect = 1e-10
Identities = 56/217 (25%), Positives = 97/217 (44%), Gaps = 2/217 (0%)
Frame = +1
Query: 1036 RKPDSNSSQHNLTRSSSMNFNYTINPGISSVPMYNFFPAAEFNLYGLHDEILEYARMVKP 1215
RK D+ +S + + S S N + ++ P + GLH+E++++ + + P
Sbjct: 232 RKSDNKASTYGMNYSISNCTNGNYASTCTPWKTRDYSPG----VLGLHEEVMDFYKYISP 287
Query: 1216 NQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDVDLLVVNEXXXXXXXX 1395
E A + V + +K LWP D+++YGSF+TGL L SD+DL+V +
Sbjct: 288 RPEEAAMRKEVVNRIEVVIKELWPTVDVQIYGSFSTGLYLPTSDIDLMVTGKWE------ 341
Query: 1396 ETSGRPPQLITVLGDHIRKYPWC--KSLMTVENAPIPVIKLNCKPQINGEECKEEDSDNV 1569
RPP + L +RK+ S+ ++ A +P+IKL +D
Sbjct: 342 ----RPP--LQELEQALRKHEVADPNSIKVLDKATVPIIKL---------------TDQR 380
Query: 1570 VAIDITIQGNTEVYKEKRYCHTGVQAREFVLHKLKQF 1680
+ + I N E TGV+A F+ +K++
Sbjct: 381 TDVKVDISFNVE---------TGVKAASFIKGYMKKY 408
>gb|ETP31939.1| hypothetical protein F442_19262 [Phytophthora parasitica P10297]
Length = 640
Score = 75.1 bits (183), Expect = 1e-10
Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 1/163 (0%)
Frame = +1
Query: 1174 LHDEILEYARMVKPNQETYA-RVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDV 1350
LH+EIL Y + K +T A +E + VR +V+SLWP +E +GS++TG+ L SDV
Sbjct: 144 LHEEILAYTKYTKETVDTMAVHIEQMIANVRASVQSLWPQSKVETFGSYSTGIWLPSSDV 203
Query: 1351 DLLVVNEXXXXXXXXETSGRPPQLITVLGDHIRKYPWCKSLMTVENAPIPVIKLNCKPQI 1530
DL+++ + T+ QL VL K W +SL+ ++ A +PV+KL
Sbjct: 204 DLVIL-DVVEVNDSKLTAKHLRQLAKVL----EKKKWVESLLCLDTAKVPVLKL------ 252
Query: 1531 NGEECKEEDSDNVVAIDITIQGNTEVYKEKRYCHTGVQAREFV 1659
++ V IDIT E H+G+ AR+ +
Sbjct: 253 -------VSAETSVPIDITF--------ESAATHSGLLARDLI 280