BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00003240
         (1522 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOY22546.1| Chromatin remodeling complex subunit, putative is...   150   2e-43
ref|XP_002280389.1| PREDICTED: SWI/SNF complex subunit SWI3A [Vi...   142   3e-43
emb|CAN80839.1| hypothetical protein VITISV_043833 [Vitis vinifera]   140   9e-43
ref|NP_850476.1| SWI/SNF complex subunit SWI3A [Arabidopsis thal...   137   2e-41
ref|XP_003527961.2| PREDICTED: SWI/SNF complex subunit SWI3A-lik...   134   3e-41
ref|XP_004168975.1| PREDICTED: SWI/SNF complex subunit SWI3A-lik...   132   2e-40
ref|XP_004138253.1| PREDICTED: SWI/SNF complex subunit SWI3A-lik...   132   2e-40
ref|XP_006295465.1| hypothetical protein CARUB_v10024568mg [Caps...   138   7e-40
gb|EXB25272.1| SWI/SNF complex subunit SWI3A [Morus notabilis]        131   1e-38
ref|XP_002511138.1| DNA binding protein, putative [Ricinus commu...   131   4e-38
ref|XP_003579976.1| PREDICTED: SWI/SNF complex subunit SWI3A-lik...   120   6e-35
gb|EOY22547.1| Chromatin remodeling complex subunit, putative is...   150   2e-33
gb|EOY22550.1| Chromatin remodeling complex subunit, putative is...   149   2e-33
gb|EOY22549.1| Chromatin remodeling complex subunit, putative is...   149   2e-33
gb|EOY22548.1| Chromatin remodeling complex subunit, putative is...   149   2e-33
ref|XP_004235292.1| PREDICTED: SWI/SNF complex subunit SWI3A-lik...   116   7e-33
gb|EMJ10292.1| hypothetical protein PRUPE_ppa003602mg [Prunus pe...   147   2e-32
ref|XP_004297521.1| PREDICTED: SWI/SNF complex subunit SWI3A-lik...   146   3e-32
ref|XP_006844619.1| hypothetical protein AMTR_s00016p00224780 [A...   142   4e-31
ref|XP_003602787.1| SWI/SNF complex subunit SMARCC2 [Medicago tr...   140   1e-30

>gb|EOY22546.1| Chromatin remodeling complex subunit, putative isoform 1 [Theobroma
            cacao]
          Length = 595

 Score =  150 bits (380), Expect(2) = 2e-43
 Identities = 119/406 (29%), Positives = 183/406 (45%), Gaps = 22/406 (5%)
 Frame = -1

Query: 1522 RKSPQNRLTFTHIRKLLIGDVTALHNIFNFLDAWGLINFQASSQRPNTKYEAPHIVVDNG 1343
            R+ P  RLTFT IRK L+GDVT LH +F FL+ WGLINF  S  RP+   E    V    
Sbjct: 104  REDPSRRLTFTEIRKSLVGDVTLLHKVFIFLETWGLINF-VSPPRPHEGSEKDDTVRVED 162

Query: 1342 VPPSAVRVAFPSHSVRRGMAPSARRLVSDGPS--KTMYDTSLVSHKDIFCNEKE-DAPQL 1172
              P+ VRV    +S+R   AP  +   SDG +    +    L S+ D+F + K       
Sbjct: 163  GAPNGVRVVATPNSLRPLSAPVVKGKSSDGGAGEGVLKLPPLASYSDVFGDLKRLRCGNC 222

Query: 1171 VTTSSE----AKSKFPVCIKCFMNGNYGNCHCASDNKHVSNHEKRSRVECNPWTDQEMLR 1004
                SE     K  F VC+KCF +GNYG  + + D+ ++ N    S      WT+ E L 
Sbjct: 223  GDCDSEYYEYNKDHFVVCVKCFKSGNYGE-NKSMDDFNLKNGSGNSATNGAVWTEAETLL 281

Query: 1003 LLEGTLYYGDNWTKIAEFVGTKSESECIMKLIQLPFGEEFMEESIIECNTRSSSNPTIDR 824
            LLE  L +GD+W  +A+ V TKS+ +CI KLI+LPFGE  ++      N   SS P+++ 
Sbjct: 282  LLESVLKHGDDWDLVAQDVQTKSKLDCITKLIELPFGESLIDSVNGRAN---SSGPSMNM 338

Query: 823  KIADHTYSLIDSSMQNYDDSNVEVKGIFEENKHPSENKYASKARRLTDEDDISDRAPRNC 644
                       +S++     +   + I  E++ P+     +       + +  +   +  
Sbjct: 339  -----------NSVKPVPVPSEHQENIRNEDQGPNLGHDDTNENEQNGDSENEEPPLKKK 387

Query: 643  NVSSSDDTDNKSIRQAAMLPTIVGPNXXXXXXXXXXXALCHEDPSATFLFGRD------- 485
              +S  D D+  ++Q A++ T+VGP             L  E      +F  D       
Sbjct: 388  RTASISDADSSLMKQVALISTMVGPQITAAAAEAAVAVLAEEMACPREIFDGDEINLTNG 447

Query: 484  -------GTEQTSYHQQELTVSGHGLTRKRMEP-EALEVQPESREL 371
                   G  + +YH +E  +      ++R  P E  E  P+  ++
Sbjct: 448  LPSPTSIGQPERAYHDEESEM------KERASPSETQETSPKKNDV 487



 Score = 53.5 bits (127), Expect(2) = 2e-43
 Identities = 29/87 (33%), Positives = 50/87 (57%)
 Frame = -3

Query: 350 EKTTEPSHLRMRXXXXXXXXXXXXXXXXXADQEEREMQYLMSVIIQNQLNKLLIKMKHFG 171
           +K   P  LR+R                 A+ EERE+++L++ II+ QL KL  K+KH  
Sbjct: 483 KKNDVPLPLRIRAAVATGLGAAAAHAKLLAEHEEREIEHLVATIIEAQLKKLHSKIKHCE 542

Query: 170 ELKMIMEKERSIVEKTKEILLAERIHI 90
           + +++M+KE + +E  +E ++ ERI+I
Sbjct: 543 DAELLMKKEYAAIEDLREYIIGERINI 569


>ref|XP_002280389.1| PREDICTED: SWI/SNF complex subunit SWI3A [Vitis vinifera]
            gi|297734457|emb|CBI15704.3| unnamed protein product
            [Vitis vinifera]
          Length = 563

 Score =  142 bits (358), Expect(2) = 3e-43
 Identities = 114/402 (28%), Positives = 176/402 (43%), Gaps = 13/402 (3%)
 Frame = -1

Query: 1522 RKSPQNRLTFTHIRKLLIGDVTALHNIFNFLDAWGLINFQASSQRPN---TKYEAPHIVV 1352
            R+ P  RLTF  IRK L+GDV+ LH +F FL+ WGLINF A     +    +    H V 
Sbjct: 72   REDPSRRLTFAEIRKSLVGDVSLLHKVFLFLERWGLINFGAPGGEDSAAVAEGAERHRVR 131

Query: 1351 DNGVPPSAVRVAFPSHSVRRGMAPSARRLVSDGPSKTMYDTSLVSHKDIFCNEKEDAPQL 1172
                 P+ +RV    +S++    P    +  +          L S+ D+F +  ++   +
Sbjct: 132  SEDGAPNGIRVVAMPNSLKPITMPLTLDVNGEVDENGFRLPPLASYSDVFSDLTKEKGLV 191

Query: 1171 VTTSSE---------AKSKFPVCIKCFMNGNYGNCHCASDNKHVSNHEKRSRVECNPWTD 1019
                 +          K    +C+KCF NGNYG      D K    +E R       WT+
Sbjct: 192  CGNCGDNCDSGHYNCLKGSPVICVKCFKNGNYGENRSVDDFKFNDCNENRGN-RGAVWTE 250

Query: 1018 QEMLRLLEGTLYYGDNWTKIAEFVGTKSESECIMKLIQLPFGEEFMEESIIECNTRSSSN 839
             E L LLE  L +GD+W  + + V TK++ +CI KLI+LPFGE  +  S+    +R+S+ 
Sbjct: 251  AETLLLLESVLKHGDDWELVVQNVQTKTKLDCISKLIELPFGELMLGSSL--GKSRASN- 307

Query: 838  PTIDRKIADHTYSLIDSSMQNYDDSNVEVKGIFEENKHPSENKYASKARRLTDEDDISDR 659
                    D+T S+           N++  G  +E  + SE           D ++    
Sbjct: 308  --------DNTSSIKPVQTSLESQENIKNGGQGDEQINESEQN--------GDAENQGPP 351

Query: 658  APRNCNVSSSDDTDNKSIRQAAMLPTIVGPNXXXXXXXXXXXALCHEDPSATFLFGRDGT 479
              R C ++S  D     +RQ A++ T+VGP+           ALC E+P    +F  DG 
Sbjct: 352  LKRKC-ITSLSDAGISLMRQVAVISTMVGPHISAAAADAAVAALCDENPCVKDIF--DGA 408

Query: 478  EQTSYHQQELTVSGHGLTRKRM-EPEALEVQPESRELTKSCS 356
            E     +    +  + L R  M E   +  +P   E+ K+ S
Sbjct: 409  EDNVTEELGSPIRNNKLERSLMVEDSEINERPILSEIQKTSS 450



 Score = 62.0 bits (149), Expect(2) = 3e-43
 Identities = 34/87 (39%), Positives = 53/87 (60%)
 Frame = -3

Query: 350 EKTTEPSHLRMRXXXXXXXXXXXXXXXXXADQEEREMQYLMSVIIQNQLNKLLIKMKHFG 171
           EK   P  L+MR                 ADQE RE+++L++ II+ Q+ KL  K++HF 
Sbjct: 451 EKNAIPLPLQMRAAIATALGAAAANAKSLADQEHREIEHLVATIIETQMKKLHCKIQHFE 510

Query: 170 ELKMIMEKERSIVEKTKEILLAERIHI 90
           +L++IMEKE + +++ KE ++AERI I
Sbjct: 511 DLELIMEKEYTHLKELKESIIAERIDI 537


>emb|CAN80839.1| hypothetical protein VITISV_043833 [Vitis vinifera]
          Length = 563

 Score =  140 bits (353), Expect(2) = 9e-43
 Identities = 113/402 (28%), Positives = 175/402 (43%), Gaps = 13/402 (3%)
 Frame = -1

Query: 1522 RKSPQNRLTFTHIRKLLIGDVTALHNIFNFLDAWGLINFQASSQRPN---TKYEAPHIVV 1352
            R+ P  RLTF  IRK L+GDV+ LH +F FL+ WGLINF A     +    +    H V 
Sbjct: 72   REDPSRRLTFAEIRKSLVGDVSLLHKVFLFLERWGLINFGAPGGEDSAAVAEGAERHRVR 131

Query: 1351 DNGVPPSAVRVAFPSHSVRRGMAPSARRLVSDGPSKTMYDTSLVSHKDIFCNEKEDAPQL 1172
                 P+ +RV    +S++    P    +  +          L S+ D+F +  ++   +
Sbjct: 132  SEDGAPNGIRVVAMPNSLKPITMPLTLDVNGEVDENGFRLPPLASYSDVFSDLTKEKGLV 191

Query: 1171 VTTSSE---------AKSKFPVCIKCFMNGNYGNCHCASDNKHVSNHEKRSRVECNPWTD 1019
                 +          K    +C+KCF NGNYG      D K    +E R       WT+
Sbjct: 192  CGNCGDNCDSGHYNCLKGSPVICVKCFKNGNYGENRSVDDFKFNDCNENRGN-RGAVWTE 250

Query: 1018 QEMLRLLEGTLYYGDNWTKIAEFVGTKSESECIMKLIQLPFGEEFMEESIIECNTRSSSN 839
             E L LLE  L +GD+W  + + V TK++ +CI KLI+LPFGE  +  S+    +R+S+ 
Sbjct: 251  AETLLLLESVLKHGDDWELVVQNVQTKTKLDCISKLIELPFGELMLGSSL--GKSRASN- 307

Query: 838  PTIDRKIADHTYSLIDSSMQNYDDSNVEVKGIFEENKHPSENKYASKARRLTDEDDISDR 659
                    D+T S+           N++  G  +E  + SE           D ++    
Sbjct: 308  --------DNTSSIKPVQTSLESQENIKNGGQGDEQINESEQN--------GDAENQGPP 351

Query: 658  APRNCNVSSSDDTDNKSIRQAAMLPTIVGPNXXXXXXXXXXXALCHEDPSATFLFGRDGT 479
              R C ++S  D     + Q A++ T+VGP+           ALC E+P    +F  DG 
Sbjct: 352  LKRKC-ITSLSDAGISLMXQVAVISTMVGPHISAAAADAAVAALCDENPCVKDIF--DGA 408

Query: 478  EQTSYHQQELTVSGHGLTRKRM-EPEALEVQPESRELTKSCS 356
            E     +    +  + L R  M E   +  +P   E+ K+ S
Sbjct: 409  EDNVTEELGSPIRNNXLERSLMVEDSEINERPILSEIQKTSS 450



 Score = 62.0 bits (149), Expect(2) = 9e-43
 Identities = 34/87 (39%), Positives = 53/87 (60%)
 Frame = -3

Query: 350 EKTTEPSHLRMRXXXXXXXXXXXXXXXXXADQEEREMQYLMSVIIQNQLNKLLIKMKHFG 171
           EK   P  L+MR                 ADQE RE+++L++ II+ Q+ KL  K++HF 
Sbjct: 451 EKNAIPLPLQMRAAIATALGAAAANAKSLADQEHREIEHLVATIIETQMKKLHCKIQHFE 510

Query: 170 ELKMIMEKERSIVEKTKEILLAERIHI 90
           +L++IMEKE + +++ KE ++AERI I
Sbjct: 511 DLELIMEKEYTHLKELKESIIAERIDI 537


>ref|NP_850476.1| SWI/SNF complex subunit SWI3A [Arabidopsis thaliana]
            gi|75331380|sp|Q8W475.1|SWI3A_ARATH RecName: Full=SWI/SNF
            complex subunit SWI3A; Short=AtSWI3A; AltName:
            Full=Transcription regulatory protein SWI3A
            gi|17065436|gb|AAL32872.1| putative SWI/SNF family
            transcription activator [Arabidopsis thaliana]
            gi|20148483|gb|AAM10132.1| putative SWI/SNF family
            transcription activator [Arabidopsis thaliana]
            gi|330255771|gb|AEC10865.1| SWI/SNF complex subunit SWI3A
            [Arabidopsis thaliana]
          Length = 512

 Score =  137 bits (344), Expect(2) = 2e-41
 Identities = 105/358 (29%), Positives = 159/358 (44%), Gaps = 12/358 (3%)
 Frame = -1

Query: 1522 RKSPQNRLTFTHIRKLLIGDVTALHNIFNFLDAWGLINFQASSQRPNTKYEAPHIVVDNG 1343
            R+    RLTFT +RK L+GDV  L  +F FL+ WGLINF +S ++ +      +  ++ G
Sbjct: 63   REDTCRRLTFTSVRKFLVGDVNLLQKVFLFLEKWGLINFSSSLKKNDHLLSVDNAKIEQG 122

Query: 1342 VPPSAVRVAFPSHSVRRGMAPSARRLVSDGPSKTMYDTSLVSHKDIFCNEKEDAPQLVTT 1163
             P + +RV    +S+R   AP    LV +     +    L S+ D+F + K+    LV  
Sbjct: 123  TP-AGIRVTATPNSLRPITAPP---LVEERVETGIKVPPLTSYSDVFSDLKKPDHVLVCA 178

Query: 1162 SSEAKSKFP----------VCIKCFMNGNYGNCHCASDNKHVSNHEKRSRVECNPWTDQE 1013
                +   P          +C KCF NGNYG  + A D K + N           WT++E
Sbjct: 179  HCGERCDSPFYQHNKGIVNICEKCFKNGNYGENNTADDFKLIGNSAAAV------WTEEE 232

Query: 1012 MLRLLEGTLYYGDNWTKIAEFVGTKSESECIMKLIQLPFGEEFMEESIIECNTRSSSNPT 833
            +L LLE  L +GD+W  I++ V TKS  +CI KLI+LPFGE  M       +     NP+
Sbjct: 233  ILLLLESVLKHGDDWELISQSVSTKSRLDCISKLIELPFGEFLMG------SASGRLNPS 286

Query: 832  IDRKIADHTYSLIDSSMQNYDDSNVEVKGIFEENKHPSENKYASKARRLTDEDDISDRAP 653
            I                ++ +   V+  G   E     E K          ED +++  P
Sbjct: 287  I--------------LTEDENTEQVQTDGQEHEETETREEK----------EDRVNEDEP 322

Query: 652  --RNCNVSSSDDTDNKSIRQAAMLPTIVGPNXXXXXXXXXXXALCHEDPSATFLFGRD 485
              +   V+   + D+  ++Q A + + VGP+           ALC E      +F  D
Sbjct: 323  PAKRKRVALISEGDSSLMKQVAAMASKVGPSVATAAAKAALAALCDEASCPKEIFDTD 380



 Score = 60.8 bits (146), Expect(2) = 2e-41
 Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
 Frame = -3

Query: 380 KRVDEELQQDEKTTE---PSHLRMRXXXXXXXXXXXXXXXXXADQEEREMQYLMSVIIQN 210
           K  D E QQ+EK      P  LR+R                 ADQEEREM+ L + +I+ 
Sbjct: 394 KDTDMEEQQEEKDGPQGLPVALRIRASVATALGAAAAQAKILADQEEREMEQLAATVIEQ 453

Query: 209 QLNKLLIKMKHFGELKMIMEKERSIVEKTKEILLAERIHI 90
           QL KL  K+K   +L+ IM++E  ++E  KE ++ ER+ +
Sbjct: 454 QLKKLQSKLKFLDDLESIMDEEEKVIEGVKETIIQERVSV 493


>ref|XP_003527961.2| PREDICTED: SWI/SNF complex subunit SWI3A-like [Glycine max]
          Length = 523

 Score =  134 bits (336), Expect(2) = 3e-41
 Identities = 103/377 (27%), Positives = 167/377 (44%), Gaps = 18/377 (4%)
 Frame = -1

Query: 1522 RKSPQNRLTFTHIRKLLIGDVTALHNIFNFLDAWGLINF---QASSQRPNTKYEAPH--I 1358
            R+ P  RLTFT +RK L+GDVT LH  F  L+ WGLIN+   Q SS     + E  H  +
Sbjct: 67   REEPSRRLTFTEVRKSLVGDVTFLHKAFLLLEHWGLINYGTAQPSSGADAAEEEEEHRKV 126

Query: 1357 VVDNGVPPSAVRVAFPSHSVRRGMAPSARRLVSDGPSKTMYDTSLVSHKDIF-------- 1202
             ++ G P   +RVA   +S++  + P   +   +    ++    L S+ D++        
Sbjct: 127  RLEEGAP-GGIRVAATPNSLKPMLLPRNGKSGVNASGASLKLPPLASYSDVYGDLIRQKE 185

Query: 1201 -----CNEKEDAPQLVTTSSEAKSKFPVCIKCFMNGNYGNCHCASDNKHVSNHEKRSRVE 1037
                 C  K  +     T    +  F +CI CF +GNYG      D   +S   + S   
Sbjct: 186  GNCGLCGHKCGSGHYRCT----QDNFIICINCFKSGNYGEKRSTEDFV-LSESSENSGKH 240

Query: 1036 CNPWTDQEMLRLLEGTLYYGDNWTKIAEFVGTKSESECIMKLIQLPFGEEFMEESIIECN 857
               WT+ E L LLE  L +GD+W  +A+ V TK++ +CI KLI+LPFGE  +  +    N
Sbjct: 241  DTVWTEAETLLLLESVLKHGDDWELVAQSVQTKTKLDCISKLIELPFGELMLGPAHRNVN 300

Query: 856  TRSSSNPTIDRKIADHTYSLIDSSMQNYDDSNVEVKGIFEENKHPSENKYASKARRLTDE 677
               ++       I ++   +  SS  N + S  +     +  +  +EN+         + 
Sbjct: 301  INDANG------IVNNAKQVQSSSSDNQEISKTK----DQSPEFTNENE--------QNG 342

Query: 676  DDISDRAPRNCNVSSSDDTDNKSIRQAAMLPTIVGPNXXXXXXXXXXXALCHEDPSATFL 497
            D + +   +   V+S  D+ +  + Q  ++  +V P+           ALC ED     +
Sbjct: 343  DAVKESPSKRQRVASLSDSSSSLMNQVGLISNVVDPHITAAAADAAVSALCDEDLCPREI 402

Query: 496  FGRDGTEQTSYHQQELT 446
            F  DG E     +  L+
Sbjct: 403  FDVDGEEGLEMERSSLS 419



 Score = 63.5 bits (153), Expect(2) = 3e-41
 Identities = 32/92 (34%), Positives = 57/92 (61%)
 Frame = -3

Query: 365 ELQQDEKTTEPSHLRMRXXXXXXXXXXXXXXXXXADQEEREMQYLMSVIIQNQLNKLLIK 186
           E+++   +  P  LR+R                 ADQE+RE+++L++ II+ Q++K+L K
Sbjct: 412 EMERSSLSEIPLTLRVRAATATALGAAAARAKLLADQEDREIEHLVATIIEAQIDKMLQK 471

Query: 185 MKHFGELKMIMEKERSIVEKTKEILLAERIHI 90
           +KHF +L+++MEKE + +E  K+ +L ERI +
Sbjct: 472 VKHFDDLELLMEKEHAEMENKKDSILTERIDV 503


>ref|XP_004168975.1| PREDICTED: SWI/SNF complex subunit SWI3A-like [Cucumis sativus]
          Length = 566

 Score =  132 bits (332), Expect(2) = 2e-40
 Identities = 112/411 (27%), Positives = 186/411 (45%), Gaps = 28/411 (6%)
 Frame = -1

Query: 1522 RKSPQNRLTFTHIRKLLIGDVTALHNIFNFLDAWGLINFQASSQRPNTKY----EAPHIV 1355
            R+ P +RLTFT IRK L+GDV  LH +F FL+ WGLINF A+S   +       E+  I 
Sbjct: 72   REEPSSRLTFTEIRKSLVGDVNLLHKVFAFLETWGLINFGATSDDDDLAEVEDGESSVIK 131

Query: 1354 VDNGVPPSAVRVAFPSHSVRRGMAPSA--RRLVSDG-----PSKTMYDT---SLVSHKDI 1205
            ++ GV P+ +RV    +SV+   AP      ++ +G     P  T Y      L+  K +
Sbjct: 132  IEEGV-PNGIRVGAMPNSVKPISAPPVVEDSVIVNGSGFKLPPLTSYSDVFGDLLKQKIL 190

Query: 1204 FCNEKEDAPQLVTTSSE--AKSKFPVCIKCFMNGNYGNCHCASDNKHVSNHEKRSRVECN 1031
             C    +  QL  +     AK  + +C  CF +G YG      D +  +      R    
Sbjct: 191  VCG---NCGQLCGSRYHQCAKDDYSICENCFKDGKYGEKRLLEDFELKTTEFTEDRSSTG 247

Query: 1030 P-WTDQEMLRLLEGTLYYGDNWTKIAEFVGTKSESECIMKLIQLPFGEEFM-EESIIECN 857
              WT+ E L LLE  L +GD+W  +A+ V TK++ +CI+K ++LPFG+  +  E+     
Sbjct: 248  AVWTEAETLLLLESVLKHGDDWELVAQNVQTKTKLDCILKFVELPFGDSLLCSETQRNEV 307

Query: 856  TRSSSNPTIDRKIADHTYSLIDSSMQNYDDSNVEVKGIFEENKHPSENKYASKARRLTDE 677
            +  ++N T +++  D      ++     + +  E +   + N+               DE
Sbjct: 308  SGPNNNVTSEKETTDGPPETTEAPPNKQEIAGSEDQCTKDINE---------------DE 352

Query: 676  DDISDRAPRNCNVSSSDDTDNKSIRQAAMLPTIVGPNXXXXXXXXXXXALCHED--PSAT 503
            D  +   P+    +S  DT +  ++Q A++ ++VGP            ALC E+  P   
Sbjct: 353  DGENQGPPKRQCTASIQDTSSSLMKQVALISSMVGPQIMAAASTASVTALCDENSYPKEI 412

Query: 502  F----LFGRDG----TEQTSYHQQELTVSGHGLTRKRMEPEALEVQPESRE 374
            F     F  +G       TS H+ E  ++      K   P++ ++  E ++
Sbjct: 413  FDDQNFFVTNGLCSAASTTSNHEVERILNNEDSVAKE-RPQSGDIMAEDKD 462



 Score = 62.4 bits (150), Expect(2) = 2e-40
 Identities = 26/57 (45%), Positives = 44/57 (77%)
 Frame = -3

Query: 260 DQEEREMQYLMSVIIQNQLNKLLIKMKHFGELKMIMEKERSIVEKTKEILLAERIHI 90
           DQEEREM+YL+ ++I+ Q+ K+  K+KHF +L++IME E  ++E+ ++ LL ER+ +
Sbjct: 490 DQEEREMEYLLGIMIETQMKKMQRKIKHFEDLELIMETEYPVIEEPEDELLMERVSV 546


>ref|XP_004138253.1| PREDICTED: SWI/SNF complex subunit SWI3A-like [Cucumis sativus]
          Length = 566

 Score =  132 bits (332), Expect(2) = 2e-40
 Identities = 112/411 (27%), Positives = 186/411 (45%), Gaps = 28/411 (6%)
 Frame = -1

Query: 1522 RKSPQNRLTFTHIRKLLIGDVTALHNIFNFLDAWGLINFQASSQRPNTKY----EAPHIV 1355
            R+ P +RLTFT IRK L+GDV  LH +F FL+ WGLINF A+S   +       E+  I 
Sbjct: 72   REEPSSRLTFTEIRKSLVGDVNLLHKVFAFLETWGLINFGATSDDDDLAEVEDGESSVIK 131

Query: 1354 VDNGVPPSAVRVAFPSHSVRRGMAPSA--RRLVSDG-----PSKTMYDT---SLVSHKDI 1205
            ++ GV P+ +RV    +SV+   AP      ++ +G     P  T Y      L+  K +
Sbjct: 132  IEEGV-PNGIRVGAMPNSVKPISAPPVVEDSVIVNGSGFKLPPLTSYSDVFGDLLKQKIL 190

Query: 1204 FCNEKEDAPQLVTTSSE--AKSKFPVCIKCFMNGNYGNCHCASDNKHVSNHEKRSRVECN 1031
             C    +  QL  +     AK  + +C  CF +G YG      D +  +      R    
Sbjct: 191  VCG---NCGQLCGSRYHQCAKDDYSICENCFKDGKYGEKRLLEDFELKTTEFTEDRSSTG 247

Query: 1030 P-WTDQEMLRLLEGTLYYGDNWTKIAEFVGTKSESECIMKLIQLPFGEEFM-EESIIECN 857
              WT+ E L LLE  L +GD+W  +A+ V TK++ +CI+K ++LPFG+  +  E+     
Sbjct: 248  AVWTEAETLLLLESVLKHGDDWELVAQNVQTKTKLDCILKFVELPFGDSLLCSETQRNEV 307

Query: 856  TRSSSNPTIDRKIADHTYSLIDSSMQNYDDSNVEVKGIFEENKHPSENKYASKARRLTDE 677
            +  ++N T +++  D      ++     + +  E +   + N+               DE
Sbjct: 308  SGPNNNVTSEKETTDGPPETTEAPPNKQEIAGSEDQCTKDINE---------------DE 352

Query: 676  DDISDRAPRNCNVSSSDDTDNKSIRQAAMLPTIVGPNXXXXXXXXXXXALCHED--PSAT 503
            D  +   P+    +S  DT +  ++Q A++ ++VGP            ALC E+  P   
Sbjct: 353  DGENQGPPKRQCTASIQDTSSSLMKQVALISSMVGPQIMAAASTASVTALCDENSYPKEI 412

Query: 502  F----LFGRDG----TEQTSYHQQELTVSGHGLTRKRMEPEALEVQPESRE 374
            F     F  +G       TS H+ E  ++      K   P++ ++  E ++
Sbjct: 413  FDDQNFFVTNGLCSAASTTSNHEVERILNNEDSVAKE-RPQSGDIMAEDKD 462



 Score = 62.4 bits (150), Expect(2) = 2e-40
 Identities = 26/57 (45%), Positives = 44/57 (77%)
 Frame = -3

Query: 260 DQEEREMQYLMSVIIQNQLNKLLIKMKHFGELKMIMEKERSIVEKTKEILLAERIHI 90
           DQEEREM+YL+ ++I+ Q+ K+  K+KHF +L++IME E  ++E+ ++ LL ER+ +
Sbjct: 490 DQEEREMEYLLGIMIETQMKKMQRKIKHFEDLELIMETEYPVIEELEDELLMERVSV 546


>ref|XP_006295465.1| hypothetical protein CARUB_v10024568mg [Capsella rubella]
            gi|482564173|gb|EOA28363.1| hypothetical protein
            CARUB_v10024568mg [Capsella rubella]
          Length = 508

 Score =  138 bits (347), Expect(2) = 7e-40
 Identities = 112/363 (30%), Positives = 161/363 (44%), Gaps = 12/363 (3%)
 Frame = -1

Query: 1522 RKSPQNRLTFTHIRKLLIGDVTALHNIFNFLDAWGLINFQASSQRPNTKYEAPHIVVDNG 1343
            R+     LTFT IRK L+GDV  L  +F FLD WGLINF  S ++ ++     +  ++ G
Sbjct: 63   REDTSRSLTFTSIRKFLVGDVNLLQKVFLFLDKWGLINFSPSLKKNDSSSLVDNAKIEQG 122

Query: 1342 VPPSAVRVAFPSHSVRRGMAPSARRLVSDGPSKTMYDTSLVSHKDIFCNEKEDAPQLV-- 1169
             P + +RV+   +S+R   AP    LV +     +    L S+ D+F + K+    LV  
Sbjct: 123  TP-AGIRVSAAPNSLRPITAPP---LVEERTESGIKLPPLTSYSDVFSDLKKPDDVLVCG 178

Query: 1168 --------TTSSEAKSKFPVCIKCFMNGNYGNCHCASDNKHVSNHEKRSRVECNPWTDQE 1013
                    +     KS   +C KCF NGNYG  + A D K +             WT++E
Sbjct: 179  HCGERCDSSFYQHNKSIVNICEKCFKNGNYGENNTADDFKLIGISAAAV------WTEEE 232

Query: 1012 MLRLLEGTLYYGDNWTKIAEFVGTKSESECIMKLIQLPFGEEFMEESIIECNTRSSSNPT 833
             L LLE  L +GD+W  IA+ V TKS  +CI KLI+LPFGE  M                
Sbjct: 233  TLLLLESVLKHGDDWELIAQSVSTKSRLDCISKLIELPFGEFLM---------------- 276

Query: 832  IDRKIADHTYSLIDSSMQNYDDSNVEVKGIFEENKHPSENKYASKARRLTDEDDISDRAP 653
                    T   ++SS+   D+   +VK   +E++            R   ED+   +  
Sbjct: 277  ------GSTSGRLNSSIPTEDEDTEQVKTDCQEHQETE--------MREEKEDEPPVKRK 322

Query: 652  RNCNVSSSDDTDNKSIRQAAMLPTIVGPNXXXXXXXXXXXALCHED--PSATFLFGRDGT 479
            R   V+   D D+  ++Q A + + VGP+           ALC E   P   F  G D T
Sbjct: 323  R---VALISDGDSSLMKQVATMASKVGPSVATAAAKAAIAALCDEASCPKEIFDSGDDYT 379

Query: 478  EQT 470
              T
Sbjct: 380  SST 382



 Score = 54.7 bits (130), Expect(2) = 7e-40
 Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
 Frame = -3

Query: 380 KRVDEELQQDEKTTE---PSHLRMRXXXXXXXXXXXXXXXXXADQEEREMQYLMSVIIQN 210
           K  D E +++EK      P  LR+R                 ADQEEREM+ L + +I  
Sbjct: 390 KDTDMEEEREEKDGPQGLPVALRIRASVATALGAAAAQAKILADQEEREMEELAASVIDQ 449

Query: 209 QLNKLLIKMKHFGELKMIMEKERSIVEKTKEILLAERIHI 90
           Q  K+  K+K   +L+MIM+ E  ++E  KE +L ERI +
Sbjct: 450 QRKKVQSKLKFLDQLEMIMDAEEEVIEGGKETILQERISV 489


>gb|EXB25272.1| SWI/SNF complex subunit SWI3A [Morus notabilis]
          Length = 564

 Score =  131 bits (330), Expect(2) = 1e-38
 Identities = 106/371 (28%), Positives = 160/371 (43%), Gaps = 18/371 (4%)
 Frame = -1

Query: 1522 RKSPQNRLTFTHIRKLLIGDVTALHNIFNFLDAWGLINFQASSQRPNTKYE---APHIVV 1352
            R+ P  RLTFT +RK L+GDV  L  +F FL+ WGLINF ASS   +   E      + V
Sbjct: 73   REEPSRRLTFTEVRKSLVGDVNLLRKVFLFLEKWGLINFSASSDGGDCDGEEEKRSRVRV 132

Query: 1351 DNGVPPSAVRVAFPSHSVRRGMAPSARRLVSDG---------PSKTMYD---TSLVSHKD 1208
            + GV P+ +RV    +S+ + + P+   +   G         P  + Y      L+  KD
Sbjct: 133  EEGV-PNGIRVVATPNSI-KPIPPTPPVVGKKGDKFDSGVKLPPLSSYSDVFADLMKQKD 190

Query: 1207 IFCNEKEDAPQLVTTSSEAKSKFPVCIKCFMNGNYGNCHCASD---NKHVSNHEKRSRVE 1037
            + C    D+               +C KCF NGNYG      D   N+ +   +K   V 
Sbjct: 191  VVCGNCGDSCNSGHYKYTKGDNVCICAKCFENGNYGENKSVDDFELNECIREGDKHGAV- 249

Query: 1036 CNPWTDQEMLRLLEGTLYYGDNWTKIAEFVGTKSESECIMKLIQLPFGEEFMEESIIECN 857
               WT+ E   LLE  L +GD+W  +A+ V TK++ +CI KLI+LPFGE     +  + N
Sbjct: 250  ---WTEAETFLLLESVLKHGDDWELVAQNVSTKTKLDCIAKLIELPFGEVLGSATHKKGN 306

Query: 856  TRSSSNPTIDRKIADHTYSLIDSSMQNYDDSNVEVKGIFEENKHPSENKYASKARRLTDE 677
            +      T     A+ + S    +++  D  + +   + E N    EN +  K +R    
Sbjct: 307  SNDPIGNTNSLTQAESSSSENQETVKTGDQCHEKTNEV-EHNGDAVENGHPLKRQR---- 361

Query: 676  DDISDRAPRNCNVSSSDDTDNKSIRQAAMLPTIVGPNXXXXXXXXXXXALCHEDPSATFL 497
                         +S        + Q A++ TIVGP+           +LC E      +
Sbjct: 362  ------------TASLSSPGGSLMEQVALMSTIVGPHITAAAAEAAVTSLCDEYSYPREI 409

Query: 496  FGRDGTEQTSY 464
            F  DG +   Y
Sbjct: 410  F--DGYDDDDY 418



 Score = 57.4 bits (137), Expect(2) = 1e-38
 Identities = 31/92 (33%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
 Frame = -3

Query: 356 QDEKTTE---PSHLRMRXXXXXXXXXXXXXXXXXADQEEREMQYLMSVIIQNQLNKLLIK 186
           QD  +T+   P  LR+R                 ADQEERE+++ ++ II+ ++ KL  K
Sbjct: 453 QDSSSTKDDIPFTLRVRTAVATALGAAAARAKLLADQEEREIEHFVATIIETEMKKLHCK 512

Query: 185 MKHFGELKMIMEKERSIVEKTKEILLAERIHI 90
           +K+F +L++IM+K+ + +E+ ++ LLAER+ +
Sbjct: 513 IKYFEDLEVIMKKQHAEMEEIEDFLLAERVDV 544


>ref|XP_002511138.1| DNA binding protein, putative [Ricinus communis]
            gi|223550253|gb|EEF51740.1| DNA binding protein, putative
            [Ricinus communis]
          Length = 547

 Score =  131 bits (330), Expect(2) = 4e-38
 Identities = 105/358 (29%), Positives = 168/358 (46%), Gaps = 14/358 (3%)
 Frame = -1

Query: 1522 RKSPQNRLTFTHIRKLLIGDVTALHNIFNFLDAWGLINFQASSQRPN--TKYEAPHIVVD 1349
            R+ P  RLTFT IRK L+GDVT L+ +F FLD  GLINF A S   N   + E  +  V+
Sbjct: 69   REDPSRRLTFTEIRKSLVGDVTLLNKVFRFLDNSGLINFGADSAPYNDSEREEIGNFRVE 128

Query: 1348 NGVPPSAVR-VAFPSHSVRRGMAPSARRLVSDGPSKTMYDTSLVSHKDIF---------- 1202
            +G PP+ +R VA P+      + P    +V +     +    L SH D+F          
Sbjct: 129  DG-PPNGIRVVAMPNSLKPLSVPPQNAEIVEN----VLRLPPLTSHSDVFGKQIGFVCGN 183

Query: 1201 CNEKEDAPQLVTTSSEAKSKFPVCIKCFMNGNYGNCHCASDNKHVSNHEKRSRVECNPWT 1022
            C E  ++ +       +K ++ +C  CF NG+YG  +   D K   + +  S      W+
Sbjct: 184  CGETCNSGRYEC----SKGEYILCTNCFNNGDYGQNNSKDDYKFNDSVDHSSG---TVWS 236

Query: 1021 DQEMLRLLEGTLYYGDNWTKIAEFVGTKSESECIMKLIQLPFGEEFMEESIIECNTRSSS 842
            + E + LLE  L +GDNW  +   V TKS+ ECI KLI+LPF    +  +++   +  S 
Sbjct: 237  EAETILLLESVLKHGDNWDLVVRDVQTKSKLECIAKLIELPFRNLLLSSTLVGDTSGLSG 296

Query: 841  NPTIDRKIADHTYSLIDSSMQNYDDSNVEVKGIFEENKHPSENKYASKARRLTDEDDISD 662
            +       AD+   +  SS +  D  +  ++G+  E+++ SE           + D   +
Sbjct: 297  S-------ADYLKPVPVSSSEKQDAVD-NIEGLLPESQNVSEQ----------NGDAADE 338

Query: 661  RAP-RNCNVSSSDDTDNKSIRQAAMLPTIVGPNXXXXXXXXXXXALCHEDPSATFLFG 491
             +P +   + S  D  +  ++Q A++ T+ GP+           ALC E      +FG
Sbjct: 339  GSPLKRKRIVSLSDAGSCLMKQVALISTMAGPDVASAAAKAAIGALCDETSCPREIFG 396



 Score = 55.5 bits (132), Expect(2) = 4e-38
 Identities = 32/101 (31%), Positives = 59/101 (58%)
 Frame = -3

Query: 392 STRVKRVDEELQQDEKTTEPSHLRMRXXXXXXXXXXXXXXXXXADQEEREMQYLMSVIIQ 213
           ST+++  D  L Q++    P  LR+R                 AD+E+++++ L++ +++
Sbjct: 430 STQLETEDTSLGQNDI---PLTLRLRTAVATSLGAAAAHAKLLADEEDQKIEKLVTTVVE 486

Query: 212 NQLNKLLIKMKHFGELKMIMEKERSIVEKTKEILLAERIHI 90
            QL KL  K+KHF  L++IMEKE + +E+ +E L+ ER+ +
Sbjct: 487 AQLKKLQYKIKHFDNLELIMEKEYAELEELQESLIEERMDV 527


>ref|XP_003579976.1| PREDICTED: SWI/SNF complex subunit SWI3A-like [Brachypodium
            distachyon]
          Length = 558

 Score =  120 bits (300), Expect(2) = 6e-35
 Identities = 114/411 (27%), Positives = 172/411 (41%), Gaps = 12/411 (2%)
 Frame = -1

Query: 1522 RKSPQNRLTFTHIRKLLIGDVTALHNIFNFLDAWGLINFQASSQRPNTKYEAPHIVVDNG 1343
            R+ P  RLTFT +RK L+GD T L  +F FLD+ GLINF A+S RP  +      V++  
Sbjct: 80   REDPARRLTFTEVRKALVGDATLLRKLFGFLDSSGLINFSATSPRPVAQQPGLDAVLE-- 137

Query: 1342 VPPSAVRVAFPSHSVRRGMAPSARRLVSDGPSKTMYD-TSLVSHKDIFCN-EKEDAPQLV 1169
              P  ++V     + R  ++ S       G  + ++    L S+ D+F        P   
Sbjct: 138  -APVGLQV-----TPRPQVSYSVEERFGGGTGENVFRLPPLSSYVDVFGEWAPGKGPICA 191

Query: 1168 TTSSEAK--------SKFPVCIKCFM--NGNYGNCHCASDNKHVSNHEKRSRVECNPWTD 1019
                E K          F VC  C    + N     CA D K  +++   S      WTD
Sbjct: 192  FCGVECKDGKVETLEDGFKVCSTCCKTNSDNEEANKCAGDKKESADNHASS-----AWTD 246

Query: 1018 QEMLRLLEGTLYYGDNWTKIAEFVGTKSESECIMKLIQLPFGEEFMEESIIECNTRSSSN 839
             E L LLEG L +GD+W  I + V TK++ ECI +LIQLPFGE  +     + ++R  ++
Sbjct: 247  AETLLLLEGVLKHGDDWDLITQHVRTKNKLECIARLIQLPFGEHMLGAINGKSDSRFQTS 306

Query: 838  PTIDRKIADHTYSLIDSSMQNYDDSNVEVKGIFEENKHPSENKYASKARRLTDEDDISDR 659
             T D K   + Y + D+S Q    SN  V G+  + +    +K             + ++
Sbjct: 307  QTTDGK--TNHYIVKDTSSQ----SNEMVDGMQIDGEQDGADKL------------VEEQ 348

Query: 658  APRNCNVSSSDDTDNKSIRQAAMLPTIVGPNXXXXXXXXXXXALCHEDPSATFLFGRDGT 479
              +   +SSS D     + Q A+L T    +           AL  E+P A         
Sbjct: 349  PSKRQRLSSSIDVTGSLMEQLALLTTATSLDVVAAAAAASIKALGSENPQA--------- 399

Query: 478  EQTSYHQQELTVSGHGLTRKRMEPEALEVQPESRELTKSCSRMKKLQNLLI 326
             + ++H  E    G   +   +      V  +  E+       KKLQ   I
Sbjct: 400  -KNAFHLSEKEYQGKTFSSNHIHESECNVGDQEGEMHGQTVPDKKLQKKYI 449



 Score = 56.2 bits (134), Expect(2) = 6e-35
 Identities = 25/57 (43%), Positives = 43/57 (75%)
 Frame = -3

Query: 260 DQEEREMQYLMSVIIQNQLNKLLIKMKHFGELKMIMEKERSIVEKTKEILLAERIHI 90
           DQEERE++ L++ II+ QL K+  K+KHF EL++IM++E + +++ KE L+ E + +
Sbjct: 475 DQEEREIELLLASIIETQLRKIQYKIKHFEELELIMDQEYNTIQQIKESLINEWLKV 531


>gb|EOY22547.1| Chromatin remodeling complex subunit, putative isoform 2 [Theobroma
            cacao]
          Length = 486

 Score =  150 bits (378), Expect = 2e-33
 Identities = 114/378 (30%), Positives = 172/378 (45%), Gaps = 21/378 (5%)
 Frame = -1

Query: 1522 RKSPQNRLTFTHIRKLLIGDVTALHNIFNFLDAWGLINFQASSQRPNTKYEAPHIVVDNG 1343
            R+ P  RLTFT IRK L+GDVT LH +F FL+ WGLINF  S  RP+   E    V    
Sbjct: 104  REDPSRRLTFTEIRKSLVGDVTLLHKVFIFLETWGLINF-VSPPRPHEGSEKDDTVRVED 162

Query: 1342 VPPSAVRVAFPSHSVRRGMAPSARRLVSDGPS--KTMYDTSLVSHKDIFCNEKE-DAPQL 1172
              P+ VRV    +S+R   AP  +   SDG +    +    L S+ D+F + K       
Sbjct: 163  GAPNGVRVVATPNSLRPLSAPVVKGKSSDGGAGEGVLKLPPLASYSDVFGDLKRLRCGNC 222

Query: 1171 VTTSSE----AKSKFPVCIKCFMNGNYGNCHCASDNKHVSNHEKRSRVECNPWTDQEMLR 1004
                SE     K  F VC+KCF +GNYG  + + D+ ++ N    S      WT+ E L 
Sbjct: 223  GDCDSEYYEYNKDHFVVCVKCFKSGNYGE-NKSMDDFNLKNGSGNSATNGAVWTEAETLL 281

Query: 1003 LLEGTLYYGDNWTKIAEFVGTKSESECIMKLIQLPFGEEFMEESIIECNTRSSSNPTIDR 824
            LLE  L +GD+W  +A+ V TKS+ +CI KLI+LPFGE  ++      N   SS P+++ 
Sbjct: 282  LLESVLKHGDDWDLVAQDVQTKSKLDCITKLIELPFGESLIDSVNGRAN---SSGPSMNM 338

Query: 823  KIADHTYSLIDSSMQNYDDSNVEVKGIFEENKHPSENKYASKARRLTDEDDISDRAPRNC 644
                       +S++     +   + I  E++ P+     +       + +  +   +  
Sbjct: 339  -----------NSVKPVPVPSEHQENIRNEDQGPNLGHDDTNENEQNGDSENEEPPLKKK 387

Query: 643  NVSSSDDTDNKSIRQAAMLPTIVGPNXXXXXXXXXXXALCHEDPSATFLFGRD------- 485
              +S  D D+  ++Q A++ T+VGP             L  E      +F  D       
Sbjct: 388  RTASISDADSSLMKQVALISTMVGPQITAAAAEAAVAVLAEEMACPREIFDGDEINLTNG 447

Query: 484  -------GTEQTSYHQQE 452
                   G  + +YH +E
Sbjct: 448  LPSPTSIGQPERAYHDEE 465


>gb|EOY22550.1| Chromatin remodeling complex subunit, putative isoform 5 [Theobroma
            cacao]
          Length = 461

 Score =  149 bits (377), Expect = 2e-33
 Identities = 106/325 (32%), Positives = 160/325 (49%), Gaps = 7/325 (2%)
 Frame = -1

Query: 1522 RKSPQNRLTFTHIRKLLIGDVTALHNIFNFLDAWGLINFQASSQRPNTKYEAPHIVVDNG 1343
            R+ P  RLTFT IRK L+GDVT LH +F FL+ WGLINF  S  RP+   E    V    
Sbjct: 104  REDPSRRLTFTEIRKSLVGDVTLLHKVFIFLETWGLINF-VSPPRPHEGSEKDDTVRVED 162

Query: 1342 VPPSAVRVAFPSHSVRRGMAPSARRLVSDGPS--KTMYDTSLVSHKDIFCNEKE-DAPQL 1172
              P+ VRV    +S+R   AP  +   SDG +    +    L S+ D+F + K       
Sbjct: 163  GAPNGVRVVATPNSLRPLSAPVVKGKSSDGGAGEGVLKLPPLASYSDVFGDLKRLRCGNC 222

Query: 1171 VTTSSE----AKSKFPVCIKCFMNGNYGNCHCASDNKHVSNHEKRSRVECNPWTDQEMLR 1004
                SE     K  F VC+KCF +GNYG  + + D+ ++ N    S      WT+ E L 
Sbjct: 223  GDCDSEYYEYNKDHFVVCVKCFKSGNYGE-NKSMDDFNLKNGSGNSATNGAVWTEAETLL 281

Query: 1003 LLEGTLYYGDNWTKIAEFVGTKSESECIMKLIQLPFGEEFMEESIIECNTRSSSNPTIDR 824
            LLE  L +GD+W  +A+ V TKS+ +CI KLI+LPFGE  ++      N   SS P+++ 
Sbjct: 282  LLESVLKHGDDWDLVAQDVQTKSKLDCITKLIELPFGESLIDSVNGRAN---SSGPSMNM 338

Query: 823  KIADHTYSLIDSSMQNYDDSNVEVKGIFEENKHPSENKYASKARRLTDEDDISDRAPRNC 644
                       +S++     +   + I  E++ P+     +       + +  +   +  
Sbjct: 339  -----------NSVKPVPVPSEHQENIRNEDQGPNLGHDDTNENEQNGDSENEEPPLKKK 387

Query: 643  NVSSSDDTDNKSIRQAAMLPTIVGP 569
              +S  D D+  ++Q A++ T+VGP
Sbjct: 388  RTASISDADSSLMKQVALISTMVGP 412


>gb|EOY22549.1| Chromatin remodeling complex subunit, putative isoform 4 [Theobroma
            cacao]
          Length = 473

 Score =  149 bits (377), Expect = 2e-33
 Identities = 106/325 (32%), Positives = 160/325 (49%), Gaps = 7/325 (2%)
 Frame = -1

Query: 1522 RKSPQNRLTFTHIRKLLIGDVTALHNIFNFLDAWGLINFQASSQRPNTKYEAPHIVVDNG 1343
            R+ P  RLTFT IRK L+GDVT LH +F FL+ WGLINF  S  RP+   E    V    
Sbjct: 104  REDPSRRLTFTEIRKSLVGDVTLLHKVFIFLETWGLINF-VSPPRPHEGSEKDDTVRVED 162

Query: 1342 VPPSAVRVAFPSHSVRRGMAPSARRLVSDGPS--KTMYDTSLVSHKDIFCNEKE-DAPQL 1172
              P+ VRV    +S+R   AP  +   SDG +    +    L S+ D+F + K       
Sbjct: 163  GAPNGVRVVATPNSLRPLSAPVVKGKSSDGGAGEGVLKLPPLASYSDVFGDLKRLRCGNC 222

Query: 1171 VTTSSE----AKSKFPVCIKCFMNGNYGNCHCASDNKHVSNHEKRSRVECNPWTDQEMLR 1004
                SE     K  F VC+KCF +GNYG  + + D+ ++ N    S      WT+ E L 
Sbjct: 223  GDCDSEYYEYNKDHFVVCVKCFKSGNYGE-NKSMDDFNLKNGSGNSATNGAVWTEAETLL 281

Query: 1003 LLEGTLYYGDNWTKIAEFVGTKSESECIMKLIQLPFGEEFMEESIIECNTRSSSNPTIDR 824
            LLE  L +GD+W  +A+ V TKS+ +CI KLI+LPFGE  ++      N   SS P+++ 
Sbjct: 282  LLESVLKHGDDWDLVAQDVQTKSKLDCITKLIELPFGESLIDSVNGRAN---SSGPSMNM 338

Query: 823  KIADHTYSLIDSSMQNYDDSNVEVKGIFEENKHPSENKYASKARRLTDEDDISDRAPRNC 644
                       +S++     +   + I  E++ P+     +       + +  +   +  
Sbjct: 339  -----------NSVKPVPVPSEHQENIRNEDQGPNLGHDDTNENEQNGDSENEEPPLKKK 387

Query: 643  NVSSSDDTDNKSIRQAAMLPTIVGP 569
              +S  D D+  ++Q A++ T+VGP
Sbjct: 388  RTASISDADSSLMKQVALISTMVGP 412


>gb|EOY22548.1| Chromatin remodeling complex subunit, putative isoform 3, partial
            [Theobroma cacao]
          Length = 422

 Score =  149 bits (377), Expect = 2e-33
 Identities = 106/325 (32%), Positives = 160/325 (49%), Gaps = 7/325 (2%)
 Frame = -1

Query: 1522 RKSPQNRLTFTHIRKLLIGDVTALHNIFNFLDAWGLINFQASSQRPNTKYEAPHIVVDNG 1343
            R+ P  RLTFT IRK L+GDVT LH +F FL+ WGLINF  S  RP+   E    V    
Sbjct: 65   REDPSRRLTFTEIRKSLVGDVTLLHKVFIFLETWGLINF-VSPPRPHEGSEKDDTVRVED 123

Query: 1342 VPPSAVRVAFPSHSVRRGMAPSARRLVSDGPS--KTMYDTSLVSHKDIFCNEKE-DAPQL 1172
              P+ VRV    +S+R   AP  +   SDG +    +    L S+ D+F + K       
Sbjct: 124  GAPNGVRVVATPNSLRPLSAPVVKGKSSDGGAGEGVLKLPPLASYSDVFGDLKRLRCGNC 183

Query: 1171 VTTSSE----AKSKFPVCIKCFMNGNYGNCHCASDNKHVSNHEKRSRVECNPWTDQEMLR 1004
                SE     K  F VC+KCF +GNYG  + + D+ ++ N    S      WT+ E L 
Sbjct: 184  GDCDSEYYEYNKDHFVVCVKCFKSGNYGE-NKSMDDFNLKNGSGNSATNGAVWTEAETLL 242

Query: 1003 LLEGTLYYGDNWTKIAEFVGTKSESECIMKLIQLPFGEEFMEESIIECNTRSSSNPTIDR 824
            LLE  L +GD+W  +A+ V TKS+ +CI KLI+LPFGE  ++      N   SS P+++ 
Sbjct: 243  LLESVLKHGDDWDLVAQDVQTKSKLDCITKLIELPFGESLIDSVNGRAN---SSGPSMNM 299

Query: 823  KIADHTYSLIDSSMQNYDDSNVEVKGIFEENKHPSENKYASKARRLTDEDDISDRAPRNC 644
                       +S++     +   + I  E++ P+     +       + +  +   +  
Sbjct: 300  -----------NSVKPVPVPSEHQENIRNEDQGPNLGHDDTNENEQNGDSENEEPPLKKK 348

Query: 643  NVSSSDDTDNKSIRQAAMLPTIVGP 569
              +S  D D+  ++Q A++ T+VGP
Sbjct: 349  RTASISDADSSLMKQVALISTMVGP 373


>ref|XP_004235292.1| PREDICTED: SWI/SNF complex subunit SWI3A-like [Solanum lycopersicum]
          Length = 573

 Score =  116 bits (290), Expect(2) = 7e-33
 Identities = 104/390 (26%), Positives = 167/390 (42%), Gaps = 44/390 (11%)
 Frame = -1

Query: 1522 RKSPQNRLTFTHIRKLLIGDVTALHNIFNFLDAWGLINFQASSQRPNTKYEAP------- 1364
            R+ P  RL+F+ IRK L+GD++ LH +F FL+ WGLINF  S+        AP       
Sbjct: 68   RQDPTRRLSFSDIRKSLVGDISVLHKVFTFLEKWGLINFDPSNAETPAAIHAPAEEDKED 127

Query: 1363 ---HIVVDNGVPPSAVRVAFPSHSVRRGMAP------SARRLVSDGPSKTMYD-----TS 1226
                I V+ G  P  VRV    HS+ + +AP      +  R    G      D     + 
Sbjct: 128  EKWRIRVEEGT-PHGVRVVAAPHSL-KPLAPVPSPVITGHRGAGKGRGGGTVDNIPKFSP 185

Query: 1225 LVSHKDIF----CNEKEDAPQLVTT-----------SSEAKSKFPVCIKCFMNGNYGNCH 1091
            + S+ D++      +KE++   ++            S +A S   +C KCF +GNY    
Sbjct: 186  MASYLDVYGELVGQQKEESVVCLSCKELCASGHYEYSKDASSN--LCEKCFTSGNYDKNK 243

Query: 1090 CASDNKHVSNHEKRSRVECNPWTDQEMLRLLEGTLYYGDNWTKIAEFVGTKSESECIMKL 911
             A + K +     +       WT+ E L LLE  L +GD+W  + + V TKS+ +CI KL
Sbjct: 244  FADEFKPIDGANPKVN-----WTEAETLLLLESVLKHGDDWDLVTQNVKTKSKLDCISKL 298

Query: 910  IQLPFGEEFMEESIIECNTRSSSNPTIDRKIADHTYSLIDSSMQNYDDSNVEVKGI---- 743
            IQLPFG+  +               +I +K              N+ D N EV+G+    
Sbjct: 299  IQLPFGDLML--------------GSIHKKF-------------NFLDKNREVRGVNQAQ 331

Query: 742  --FEENKHPSENKYASKARRLTDEDDISDRAPRNCNVSSSDDTDNKS--IRQAAMLPTIV 575
                E++    N+   + +      +     P    +  +  +++ S  ++Q A +   V
Sbjct: 332  PAISESRETLGNQSHEQNQERQQNGNAECETPPLKKIRRAPVSEDSSFLMKQVAHISGAV 391

Query: 574  GPNXXXXXXXXXXXALCHEDPSATFLFGRD 485
            GP+           ALC+E+  +T +F  D
Sbjct: 392  GPHIAASAAEAAVTALCYENQCSTDIFDGD 421



 Score = 53.1 bits (126), Expect(2) = 7e-33
 Identities = 30/96 (31%), Positives = 52/96 (54%)
 Frame = -3

Query: 377 RVDEELQQDEKTTEPSHLRMRXXXXXXXXXXXXXXXXXADQEEREMQYLMSVIIQNQLNK 198
           R + E++  ++ +    LR R                 A+QEERE++YL+S +++ Q+ K
Sbjct: 451 RSETEVEASQRNSISLTLRTRAATATAIGAAAAHAKLLANQEEREIEYLVSTLVEAQVKK 510

Query: 197 LLIKMKHFGELKMIMEKERSIVEKTKEILLAERIHI 90
           L  KMKH   L ++MEK+   ++  +E L+ ER+ I
Sbjct: 511 LKRKMKHVEALNLMMEKQHGQMKDLEESLVTERMDI 546


>gb|EMJ10292.1| hypothetical protein PRUPE_ppa003602mg [Prunus persica]
          Length = 563

 Score =  147 bits (370), Expect = 2e-32
 Identities = 113/364 (31%), Positives = 167/364 (45%), Gaps = 18/364 (4%)
 Frame = -1

Query: 1522 RKSPQNRLTFTHIRKLLIGDVTALHNIFNFLDAWGLINFQASSQRPN----TKYEAPHIV 1355
            R+ P  +LTFT +RK L+GDV+ LH +FNFL+ WGLINF A+            E   + 
Sbjct: 73   REDPSRKLTFTEVRKSLVGDVSLLHKVFNFLEKWGLINFSANLGVNGGFGIEGEERSKVK 132

Query: 1354 VDNGVPPSAVRVAFPSHSVRRGMAPSARRLVSD---GPSKTMYDTSLVSHKDIFCNEKED 1184
            V++GV P+ +RVA   +S++  +  SA     D   G    +    L S+ D+F   K++
Sbjct: 133  VEDGV-PNGIRVAAMPNSIKPILPISAPPKAGDAGGGVVNRITLAPLASYSDVFGGLKKE 191

Query: 1183 APQLVTTS---------SEAKSKFPVCIKCFMNGNYGNCHCASDNKHVSNHEKRSRVECN 1031
               +               +K  F +CIKCF NGNYG      D K ++   ++S     
Sbjct: 192  EGLVCGNCGGHCETGHYKYSKGDFLICIKCFENGNYGENKLRDDFK-LNEAIEKSGTNGV 250

Query: 1030 PWTDQEMLRLLEGTLYYGDNWTKIAEFVGTKSESECIMKLIQLPFGEEFMEESIIECNTR 851
             WT+ E L LLE  L +GD+W  +A+ V TK++ +CI KLI LPFGE  +  +  + N  
Sbjct: 251  EWTESETLLLLESVLKHGDDWEFVAQNVQTKTKFDCIAKLIDLPFGELVLGSAYRKGNPS 310

Query: 850  SSSNPTIDRKIADHTYSLIDSSMQNYDDSNVEVKGIFEENKHPSENKYASKARRLTDEDD 671
            S S       I+     L  S  Q+     VE  G   E     +              D
Sbjct: 311  SFSG----NLISSERIQLSSSECQD----TVETNGQLHEQTDDCK-----------QNGD 351

Query: 670  ISDRAP--RNCNVSSSDDTDNKSIRQAAMLPTIVGPNXXXXXXXXXXXALCHEDPSATFL 497
            I D+ P  +   ++S  D  +  I+Q A + T+VGP+           ALC E   +  +
Sbjct: 352  ILDQDPPLKRQRIASLSDASSSLIKQVAAITTMVGPHITSAAAEAAVNALCEETSCSREI 411

Query: 496  FGRD 485
            F  D
Sbjct: 412  FNAD 415


>ref|XP_004297521.1| PREDICTED: SWI/SNF complex subunit SWI3A-like [Fragaria vesca subsp.
            vesca]
          Length = 549

 Score =  146 bits (368), Expect = 3e-32
 Identities = 118/367 (32%), Positives = 168/367 (45%), Gaps = 15/367 (4%)
 Frame = -1

Query: 1522 RKSPQNRLTFTHIRKLLIGDVTALHNIFNFLDAWGLINFQASSQRPNTKYEAPHIV-VDN 1346
            R+ P  +LTFT IRK L+GDVT LH +FNFL+ WGLINF A+  R +   EA   V V+ 
Sbjct: 70   REDPARKLTFTEIRKSLVGDVTLLHKVFNFLEKWGLINFGATLGRNDGFGEARITVKVEE 129

Query: 1345 GVPPSAVRVAF-PSHSVRRGMAPSARRLVSDGPSKTMYDTSLVSHKDIFCNEKEDAPQLV 1169
            GV PSAVRVA  PS S      P  R   S   S+      LVS+ ++F + K++  +LV
Sbjct: 130  GV-PSAVRVAANPSDSKPLSATPLERESGSGSASRIAL-PPLVSYSNVFGDLKKE--RLV 185

Query: 1168 TTSSEA----------KSKFPVCIKCFMNGNYGNCHCASDNKHVSNHEKRSRVECNPWTD 1019
              +             +  F +C KCF NGNYG      D K+    EK        WT+
Sbjct: 186  CNNCGGHCDSGHYKYNEGDFLLCTKCFENGNYGENKLKEDFKYNEPVEKSGNTGVE-WTE 244

Query: 1018 QEMLRLLEGTLYYGDNWTKIAEFVGTKSESECIMKLIQLPFGEEFMEESIIECNTRSSSN 839
             E L LLE  + YGD+W ++A+ V TK++ +CI KLI LPFGE  +              
Sbjct: 245  AETLLLLESVVKYGDDWDRVAQNVQTKTKVDCIAKLIDLPFGEVPLGSG----------- 293

Query: 838  PTIDRKIADHTYSLIDSSMQNYDDSNVEVKGIFEENKHPSENKYASKARRLTDEDDISDR 659
                 +   H+ +L  S                 E +   + K   +A       D +++
Sbjct: 294  ----HRKGKHSGNLSGSKQGQLS---------LSECQEAIKTKSHEQANDSEQNGDTANQ 340

Query: 658  AP---RNCNVSSSDDTDNKSIRQAAMLPTIVGPNXXXXXXXXXXXALCHEDPSATFLFGR 488
             P   + C V+S  D+ +  I Q + L T+VGP+            LC E   +  +F  
Sbjct: 341  GPPLKKQC-VTSLSDSSSSLITQVSALSTLVGPHITAAAAEAAVTILCEETSCSKEIFNA 399

Query: 487  DGTEQTS 467
            +    T+
Sbjct: 400  EDDSVTN 406


>ref|XP_006844619.1| hypothetical protein AMTR_s00016p00224780 [Amborella trichopoda]
            gi|548847090|gb|ERN06294.1| hypothetical protein
            AMTR_s00016p00224780 [Amborella trichopoda]
          Length = 576

 Score =  142 bits (358), Expect = 4e-31
 Identities = 114/356 (32%), Positives = 167/356 (46%), Gaps = 18/356 (5%)
 Frame = -1

Query: 1522 RKSPQNRLTFTHIRKLLIGDVTALHNIFNFLDAWGLINFQASSQRPNTKYEAPHIV-VDN 1346
            R+ P  RLTFT +RKLLIGDV+ +H +++FL+ WGLINFQ S            +V  + 
Sbjct: 95   REDPTRRLTFTEVRKLLIGDVSLIHKVYHFLETWGLINFQVSDHTKEMTINDTQVVNFEE 154

Query: 1345 GVPPSAVRVAFPSHSVRRGMAP--SARRLVSDGPSKTMYDTSLVSHKDIFCNEKEDAPQL 1172
            GVPPS +RV  P+ +V + M    +  R+V       +     V  +DI    K    + 
Sbjct: 155  GVPPS-IRVV-PAMNVTKQMTSDNATERVVWGFEPPPLASYVDVFGEDIHREAKRRKEET 212

Query: 1171 VTTSS---------------EAKSKFPVCIKCFMNGNYGNCHCASDNKHVSNHEKRSRVE 1037
              TS                  K +  +C KCF N        A   +  +  EK+  V 
Sbjct: 213  AVTSLACKGCGAECSLSHYLSVKGESILCGKCFENVTKAEEETADGTRTTA--EKQGPVS 270

Query: 1036 CNPWTDQEMLRLLEGTLYYGDNWTKIAEFVGTKSESECIMKLIQLPFGEEFMEESIIECN 857
               WTD EML LLEGTL +GD+W KIA  V TKS+ +CI+KLIQLPFGE  +       N
Sbjct: 271  ---WTDSEMLLLLEGTLKHGDDWDKIAAHVRTKSKYDCILKLIQLPFGEHLLS------N 321

Query: 856  TRSSSNPTIDRKIADHTYSLIDSSMQNYDDSNVEVKGIFEENKHPSENKYASKARRLTDE 677
              +  N    +K          ++  N ++ N  ++ I +E +   ++++  K+  + + 
Sbjct: 322  VNTKGNLECPKK----------NASVNKENPNPFLEAIMKEEQ---KDEHIEKSLHM-EM 367

Query: 676  DDISDRAPRNCNVSSSDDTDNKSIRQAAMLPTIVGPNXXXXXXXXXXXALCHEDPS 509
            +D S    +   + S  DT    + Q A L TIVGP            AL +E+PS
Sbjct: 368  NDFSVHPLKQNYLPSLTDTSFSLMSQVAFLSTIVGPQIAAAAAEVAVMALGNENPS 423


>ref|XP_003602787.1| SWI/SNF complex subunit SMARCC2 [Medicago truncatula]
            gi|355491835|gb|AES73038.1| SWI/SNF complex subunit
            SMARCC2 [Medicago truncatula]
          Length = 540

 Score =  140 bits (354), Expect = 1e-30
 Identities = 107/358 (29%), Positives = 166/358 (46%), Gaps = 22/358 (6%)
 Frame = -1

Query: 1522 RKSPQNRLTFTHIRKLLIGDVTALHNIFNFLDAWGLINFQASSQRPNTKYEAPH------ 1361
            R+ P  RLTFT +RK L+GDVT L+ +F FL+ WGLIN+ A S   + + E  H      
Sbjct: 66   REEPSRRLTFTEVRKSLVGDVTFLNKVFLFLECWGLINYGAPSAGNDGEAEKEHEKERCK 125

Query: 1360 IVVDNGVPPSAVRVAFPSHSVRRGMAPSARRLVSDGPSKT---MYDTSLVSHKDIF---- 1202
            + V+ G  P+ +RV    +S++    P   ++ + G  ++   +    L S+ D++    
Sbjct: 126  LKVEEGA-PNGIRVVATPNSLKPISLPRDTKIAAGGGDESGAGVKIAPLASYSDVYGDLI 184

Query: 1201 ---------CNEKEDAPQLVTTSSEAKSKFPVCIKCFMNGNYGNCHCASDNKHVSNHEKR 1049
                     C +K  +    +T    K  F +C KCF NGNYG      D K ++   + 
Sbjct: 185  RRKEVNCGNCGDKCGSGHYRST----KDNFIICTKCFKNGNYGEKRSMEDFK-LNESSEI 239

Query: 1048 SRVECNPWTDQEMLRLLEGTLYYGDNWTKIAEFVGTKSESECIMKLIQLPFGEEFMEESI 869
            S      WT+ E L LLE  L +GD+W  +A+ V TK++ ECI KLI+LPFG E M  S+
Sbjct: 240  SANHSAVWTEGETLLLLESVLKHGDDWELVAQSVRTKTKLECISKLIELPFG-ELMLASV 298

Query: 868  IECNTRSSSNPTIDRKIADHTYSLIDSSMQNYDDSNVEVKGIFEENKHPSENKYASKARR 689
               +  +S    ++ +      S          D + E K   E+N   + N+  SK RR
Sbjct: 299  RRNDNSNSVTGIVNNRNQVQVSSSDHQETSMTQDQSSEPKNEVEQN-GDAVNENPSKRRR 357

Query: 688  LTDEDDISDRAPRNCNVSSSDDTDNKSIRQAAMLPTIVGPNXXXXXXXXXXXALCHED 515
                            VS+  D+ +  ++Q  +L T+V P+           ALC E+
Sbjct: 358  ----------------VSTLSDSSSSLMKQVGLLSTVVDPHVTAAAASAAITALCDEN 399



 Score = 64.3 bits (155), Expect = 1e-07
 Identities = 35/98 (35%), Positives = 58/98 (59%)
 Frame = -3

Query: 383 VKRVDEELQQDEKTTEPSHLRMRXXXXXXXXXXXXXXXXXADQEEREMQYLMSVIIQNQL 204
           ++ V+   Q + K   P  LR+R                 ADQE+RE+++L++ II+ Q+
Sbjct: 423 LEMVEGSTQSEVKDDIPLTLRIRAAIGTALGATAARAKLLADQEDREIEHLVATIIEAQV 482

Query: 203 NKLLIKMKHFGELKMIMEKERSIVEKTKEILLAERIHI 90
            KL  K+KHF EL+++MEKE + +E+ K+ +L ERI +
Sbjct: 483 EKLQQKVKHFDELELLMEKEHAEMEELKDSILTERIDV 520