BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00003142
         (1152 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAO73521.1| gag-pol polyprotein [Glycine max]                      354   3e-95
gb|AAO73527.1| gag-pol polyprotein [Glycine max]                      354   3e-95
gb|AAO73523.1| gag-pol polyprotein [Glycine max]                      354   4e-95
gb|AAO73525.1| gag-pol polyprotein [Glycine max]                      350   6e-94
gb|AAO73529.1| gag-pol polyprotein [Glycine max]                      349   1e-93
gb|ABD32582.1| Integrase, catalytic region; Zinc finger, CCHC-ty...   348   2e-93
gb|AAC64917.1| gag-pol polyprotein [Glycine max]                      346   1e-92
gb|ABF67921.1| Ji1 putative pol protein [Zea mays]                    343   6e-92
gb|AAN40025.1| putative gag-pol polyprotein [Zea mays]                343   6e-92
gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays]         342   1e-91
gb|AAG52949.1| gag/pol polyprotein [Arabidopsis thaliana]             340   5e-91
gb|AAD20307.1| copia-type pol polyprotein [Zea mays]                  340   6e-91
gb|AAL66759.1|AF464738_10 putative pol protein [Zea mays]             339   1e-90
gb|AAC49502.1| Pol [Zea mays]                                         339   1e-90
gb|AEJ07931.1| Opie3 pol protein [Zea mays subsp. mexicana]           338   2e-90
gb|AEJ07899.1| Opie3 putative pol protein [Zea mays subsp. mexic...   338   3e-90
gb|AEJ07927.1| Opie2 pol protein [Zea mays subsp. mexicana]           337   4e-90
gb|ABF67947.1| Opie2 pol protein [Zea mays]                           337   4e-90
gb|AEJ07944.1| Opie1 putative pol protein [Zea diploperennis]         337   5e-90
gb|ABE88110.1| Reverse transcriptase (RNA-dependent DNA polymera...   336   9e-90

>gb|AAO73521.1| gag-pol polyprotein [Glycine max]
          Length = 1574

 Score =  354 bits (909), Expect = 3e-95
 Identities = 182/374 (48%), Positives = 248/374 (66%)
 Frame = +1

Query: 31   ENTEIVKASSDSLANSIPEKSFPRVTKDISTNDIIGDPYKGIQTRSQISQQTNYLCYLSQ 210
            EN++   A+ +S  N   ++S  R+ K      IIGDP +G+ TRS+  +  +  C++S+
Sbjct: 1006 ENSD--SATDESNINQPDKRSSTRIQKMHPKELIIGDPNRGVTTRSREVEIVSNSCFVSK 1063

Query: 211  DEKDIVPQTTQEALKDDGWKAAMKDEIDQIKRTGTWVLVPRTSEMNVISCKWVFRNKFDE 390
             E    P+  +EAL D+ W  AM++E++Q KR   W LVPR    NVI  KW+F+NK +E
Sbjct: 1064 IE----PKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNE 1119

Query: 391  KGKFDRKRARIVAKGYKQVAGIDYEETFAPVARLEAVRTLIALAARLNIKLYQMDVKGAF 570
            +G   R +AR+VA+GY Q+ G+D++ETFAPVARLE++R L+ +A  L  KLYQMDVK AF
Sbjct: 1120 EGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAF 1179

Query: 571  LNGNLEEEVYMEQPEGFEDEDHPSYVCHLKKALYGLKQAPRAWYGRLDSFLKSKGFIRGI 750
            LNG L EEVY+EQP+GF D  HP +V  LKKALYGLKQAPRAWY RL  FL  +G+ +G 
Sbjct: 1180 LNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGG 1239

Query: 751  NDDTQYYLIKNEQILIVEVYVDDILFGATDESLCHDFSNWMTSEFEMSMFQILKHFLGMQ 930
             D T +     E ++I ++YVDDI+FG     +   F   M SEFEMS+   L +FLG+Q
Sbjct: 1240 IDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQ 1299

Query: 931  IRQIQNGIHLSQGTYLKNMLQKFGMLQCKPHSTPMAARLVLHKDENGKSVDKTQYRSMIG 1110
            ++Q+++ I LSQ  Y KN+++KFGM       TP    L L KDE G SVD++ YRSMIG
Sbjct: 1300 VKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIG 1359

Query: 1111 CLMYATASRPEITF 1152
             L+Y TASRP+IT+
Sbjct: 1360 SLLYLTASRPDITY 1373


>gb|AAO73527.1| gag-pol polyprotein [Glycine max]
          Length = 1576

 Score =  354 bits (909), Expect = 3e-95
 Identities = 182/374 (48%), Positives = 248/374 (66%)
 Frame = +1

Query: 31   ENTEIVKASSDSLANSIPEKSFPRVTKDISTNDIIGDPYKGIQTRSQISQQTNYLCYLSQ 210
            EN++   A+ +S  N   ++S  R+ K      IIGDP +G+ TRS+  +  +  C++S+
Sbjct: 1008 ENSD--SATDESNINQPDKRSSTRIQKMHPKELIIGDPNRGVTTRSREVEIVSNSCFVSK 1065

Query: 211  DEKDIVPQTTQEALKDDGWKAAMKDEIDQIKRTGTWVLVPRTSEMNVISCKWVFRNKFDE 390
             E    P+  +EAL D+ W  AM++E++Q KR   W LVPR    NVI  KW+F+NK +E
Sbjct: 1066 IE----PKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNE 1121

Query: 391  KGKFDRKRARIVAKGYKQVAGIDYEETFAPVARLEAVRTLIALAARLNIKLYQMDVKGAF 570
            +G   R +AR+VA+GY Q+ G+D++ETFAPVARLE++R L+ +A  L  KLYQMDVK AF
Sbjct: 1122 EGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAF 1181

Query: 571  LNGNLEEEVYMEQPEGFEDEDHPSYVCHLKKALYGLKQAPRAWYGRLDSFLKSKGFIRGI 750
            LNG L EEVY+EQP+GF D  HP +V  LKKALYGLKQAPRAWY RL  FL  +G+ +G 
Sbjct: 1182 LNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGG 1241

Query: 751  NDDTQYYLIKNEQILIVEVYVDDILFGATDESLCHDFSNWMTSEFEMSMFQILKHFLGMQ 930
             D T +     E ++I ++YVDDI+FG     +   F   M SEFEMS+   L +FLG+Q
Sbjct: 1242 IDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQ 1301

Query: 931  IRQIQNGIHLSQGTYLKNMLQKFGMLQCKPHSTPMAARLVLHKDENGKSVDKTQYRSMIG 1110
            ++Q+++ I LSQ  Y KN+++KFGM       TP    L L KDE G SVD++ YRSMIG
Sbjct: 1302 VKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIG 1361

Query: 1111 CLMYATASRPEITF 1152
             L+Y TASRP+IT+
Sbjct: 1362 SLLYLTASRPDITY 1375


>gb|AAO73523.1| gag-pol polyprotein [Glycine max]
          Length = 1576

 Score =  354 bits (908), Expect = 4e-95
 Identities = 182/374 (48%), Positives = 247/374 (66%)
 Frame = +1

Query: 31   ENTEIVKASSDSLANSIPEKSFPRVTKDISTNDIIGDPYKGIQTRSQISQQTNYLCYLSQ 210
            EN++   A+ +S  N   ++S  R+ K      IIGDP +G+ TRS+  +  +  C++S+
Sbjct: 1008 ENSD--SATDESNINQPDKRSSTRIQKMHPKELIIGDPNRGVTTRSREVEIVSNSCFVSK 1065

Query: 211  DEKDIVPQTTQEALKDDGWKAAMKDEIDQIKRTGTWVLVPRTSEMNVISCKWVFRNKFDE 390
             E    P+  +EAL D+ W  AM++E++Q KR   W LVPR    NVI  KW+F+NK +E
Sbjct: 1066 IE----PKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNE 1121

Query: 391  KGKFDRKRARIVAKGYKQVAGIDYEETFAPVARLEAVRTLIALAARLNIKLYQMDVKGAF 570
            +G   R +AR+VA+GY Q+ G+D++ETFAPVARLE++R L+ +A  L  KLYQMDVK AF
Sbjct: 1122 EGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAF 1181

Query: 571  LNGNLEEEVYMEQPEGFEDEDHPSYVCHLKKALYGLKQAPRAWYGRLDSFLKSKGFIRGI 750
            LNG L EEVY+EQP+GF D  HP +V  LKKALYGLKQAPRAWY RL  FL  +G+ +G 
Sbjct: 1182 LNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGG 1241

Query: 751  NDDTQYYLIKNEQILIVEVYVDDILFGATDESLCHDFSNWMTSEFEMSMFQILKHFLGMQ 930
             D T +     E ++I ++YVDDI+FG     +   F   M SEFEMS+   L +FLG+Q
Sbjct: 1242 IDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQ 1301

Query: 931  IRQIQNGIHLSQGTYLKNMLQKFGMLQCKPHSTPMAARLVLHKDENGKSVDKTQYRSMIG 1110
            ++Q+++ I LSQ  Y KN+++KFGM       TP    L L KDE G SVD+  YRSMIG
Sbjct: 1302 VKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQKPYRSMIG 1361

Query: 1111 CLMYATASRPEITF 1152
             L+Y TASRP+IT+
Sbjct: 1362 SLLYLTASRPDITY 1375


>gb|AAO73525.1| gag-pol polyprotein [Glycine max]
          Length = 1576

 Score =  350 bits (898), Expect = 6e-94
 Identities = 183/375 (48%), Positives = 246/375 (65%), Gaps = 1/375 (0%)
 Frame = +1

Query: 31   ENTEIVKASSDSLANSIPEKS-FPRVTKDISTNDIIGDPYKGIQTRSQISQQTNYLCYLS 207
            EN E   +++D    + P+KS F R+ K      IIGDP +G+ TRS+  +  +  C++S
Sbjct: 1005 ENAEKSDSTTDEPNINQPDKSPFIRIQKMQPKELIIGDPNRGVTTRSREIEIVSNSCFVS 1064

Query: 208  QDEKDIVPQTTQEALKDDGWKAAMKDEIDQIKRTGTWVLVPRTSEMNVISCKWVFRNKFD 387
            + E    P+  +EAL D+ W  AM++E++Q KR   W LVPR    NVI  KW+F+NK +
Sbjct: 1065 KIE----PKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTN 1120

Query: 388  EKGKFDRKRARIVAKGYKQVAGIDYEETFAPVARLEAVRTLIALAARLNIKLYQMDVKGA 567
            E+G   R +AR+VA+GY Q+ G+D++ETFAPVARLE++R L+ +A  L  KLYQMDVK A
Sbjct: 1121 EEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSA 1180

Query: 568  FLNGNLEEEVYMEQPEGFEDEDHPSYVCHLKKALYGLKQAPRAWYGRLDSFLKSKGFIRG 747
            FLNG L EE Y+EQP+GF D  H  +V  LKKALYGLKQAPRAWY RL  FL  +G+ +G
Sbjct: 1181 FLNGYLNEEAYVEQPKGFVDPTHLDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKG 1240

Query: 748  INDDTQYYLIKNEQILIVEVYVDDILFGATDESLCHDFSNWMTSEFEMSMFQILKHFLGM 927
              D T +     E ++I ++YVDDI+FG     +   F   M SEFEMS+   L +FLG+
Sbjct: 1241 GIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVPQMQSEFEMSLVGELHYFLGL 1300

Query: 928  QIRQIQNGIHLSQGTYLKNMLQKFGMLQCKPHSTPMAARLVLHKDENGKSVDKTQYRSMI 1107
            Q++Q+++ I LSQ  Y KN+++KFGM       TP    L L KDE G SVD+  YRSMI
Sbjct: 1301 QVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQNLYRSMI 1360

Query: 1108 GCLMYATASRPEITF 1152
            G L+Y TASRP+ITF
Sbjct: 1361 GSLLYLTASRPDITF 1375


>gb|AAO73529.1| gag-pol polyprotein [Glycine max]
          Length = 1577

 Score =  349 bits (895), Expect = 1e-93
 Identities = 181/375 (48%), Positives = 246/375 (65%), Gaps = 1/375 (0%)
 Frame = +1

Query: 31   ENTEIVKASSDSLANSIPEKSFP-RVTKDISTNDIIGDPYKGIQTRSQISQQTNYLCYLS 207
            EN E   +++D    + P+K    R+ K      IIGDP +G+ TRS+  +  +  C++S
Sbjct: 1006 ENAENSDSATDEPNINQPDKRPSIRIQKMHPKELIIGDPNRGVTTRSREIEIVSNSCFVS 1065

Query: 208  QDEKDIVPQTTQEALKDDGWKAAMKDEIDQIKRTGTWVLVPRTSEMNVISCKWVFRNKFD 387
            + E    P+  +EAL D+ W  AM++E++Q KR   W LVPR    NVI  KW+F+NK +
Sbjct: 1066 KIE----PKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTN 1121

Query: 388  EKGKFDRKRARIVAKGYKQVAGIDYEETFAPVARLEAVRTLIALAARLNIKLYQMDVKGA 567
            E+G   R +AR+VA+GY Q+ G+D++ETFAPVARLE++R L+ +A  L  KLYQMDVK A
Sbjct: 1122 EEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSA 1181

Query: 568  FLNGNLEEEVYMEQPEGFEDEDHPSYVCHLKKALYGLKQAPRAWYGRLDSFLKSKGFIRG 747
            FLNG L EE Y+EQP+GF D  HP +V  LKKALYGLKQAPRAWY RL  FL  +G+ +G
Sbjct: 1182 FLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKG 1241

Query: 748  INDDTQYYLIKNEQILIVEVYVDDILFGATDESLCHDFSNWMTSEFEMSMFQILKHFLGM 927
              D T +     E ++I ++YVDDI+FG     +   F   M SEFEMS+   L +FLG+
Sbjct: 1242 GIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGL 1301

Query: 928  QIRQIQNGIHLSQGTYLKNMLQKFGMLQCKPHSTPMAARLVLHKDENGKSVDKTQYRSMI 1107
            Q++Q+++ I LSQ  Y KN+++KFGM       TP    L L KDE G SVD++ YRSMI
Sbjct: 1302 QVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMI 1361

Query: 1108 GCLMYATASRPEITF 1152
            G L+Y TASRP+IT+
Sbjct: 1362 GSLLYLTASRPDITY 1376


>gb|ABD32582.1| Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase
            aspartic, catalytic [Medicago truncatula]
          Length = 1715

 Score =  348 bits (893), Expect = 2e-93
 Identities = 180/341 (52%), Positives = 231/341 (67%)
 Frame = +1

Query: 130  IIGDPYKGIQTRSQISQQTNYLCYLSQDEKDIVPQTTQEALKDDGWKAAMKDEIDQIKRT 309
            IIG      +TRS   Q+ + +  LS  E    P+T +EAL DDGW  AM++E++Q +R 
Sbjct: 1179 IIGSKDSPRRTRSHFRQEESLIGLLSIIE----PKTVEEALSDDGWILAMQEELNQFQRN 1234

Query: 310  GTWVLVPRTSEMNVISCKWVFRNKFDEKGKFDRKRARIVAKGYKQVAGIDYEETFAPVAR 489
              W LVP+ S+ N+I  KWVFRNK +E+G+  R +AR+VA+GY Q  GIDY ETFAPVAR
Sbjct: 1235 DVWDLVPKPSQKNIIGTKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGIDYTETFAPVAR 1294

Query: 490  LEAVRTLIALAARLNIKLYQMDVKGAFLNGNLEEEVYMEQPEGFEDEDHPSYVCHLKKAL 669
            LEA+R L++ A    I LYQMDVK AFLNG +EEEVY++QP GFED  HP +V  LKK+L
Sbjct: 1295 LEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSL 1354

Query: 670  YGLKQAPRAWYGRLDSFLKSKGFIRGINDDTQYYLIKNEQILIVEVYVDDILFGATDESL 849
            YGLKQAPRAWY RL +FL    F RG  D T +     + ILIV++YVDDI+FG+T+ SL
Sbjct: 1355 YGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASL 1414

Query: 850  CHDFSNWMTSEFEMSMFQILKHFLGMQIRQIQNGIHLSQGTYLKNMLQKFGMLQCKPHST 1029
            C +FS  M  EFEMSM   LK FLG+QI Q + G+++ Q  Y K +L+KF +  CK  +T
Sbjct: 1415 CKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNT 1474

Query: 1030 PMAARLVLHKDENGKSVDKTQYRSMIGCLMYATASRPEITF 1152
            PM     L K++ G  VD+  YR MIG L+Y TASRP+I F
Sbjct: 1475 PMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILF 1515


>gb|AAC64917.1| gag-pol polyprotein [Glycine max]
          Length = 1550

 Score =  346 bits (887), Expect = 1e-92
 Identities = 180/375 (48%), Positives = 245/375 (65%), Gaps = 1/375 (0%)
 Frame = +1

Query: 31   ENTEIVKASSDSLANSIPEKSFP-RVTKDISTNDIIGDPYKGIQTRSQISQQTNYLCYLS 207
            EN E   +++D    + P+K    R+ K      IIGDP +G+ TRS+  +  +  C++S
Sbjct: 979  ENAENSDSATDEPNINQPDKRPSIRIQKMHPKELIIGDPNRGVTTRSREIEIISNSCFVS 1038

Query: 208  QDEKDIVPQTTQEALKDDGWKAAMKDEIDQIKRTGTWVLVPRTSEMNVISCKWVFRNKFD 387
            + E    P+  +EAL D+ W  AM++E++Q KR   W LVPR    NVI  KW+F+NK +
Sbjct: 1039 KIE----PKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTN 1094

Query: 388  EKGKFDRKRARIVAKGYKQVAGIDYEETFAPVARLEAVRTLIALAARLNIKLYQMDVKGA 567
            E+G   R +AR+VA+GY Q+ G+D++ETFAP ARLE++R L+ +A  L  KLYQMDVK A
Sbjct: 1095 EEGVITRNKARLVAQGYTQIEGVDFDETFAPGARLESIRLLLGVACILKFKLYQMDVKSA 1154

Query: 568  FLNGNLEEEVYMEQPEGFEDEDHPSYVCHLKKALYGLKQAPRAWYGRLDSFLKSKGFIRG 747
            FLNG L EE Y+EQP+GF D  HP +V  LKKALYGLKQAPRAWY RL  FL  +G+ +G
Sbjct: 1155 FLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKG 1214

Query: 748  INDDTQYYLIKNEQILIVEVYVDDILFGATDESLCHDFSNWMTSEFEMSMFQILKHFLGM 927
              D T +     E ++I ++YVDDI+FG     +   F   M SEFEMS+   L +FLG+
Sbjct: 1215 GIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGL 1274

Query: 928  QIRQIQNGIHLSQGTYLKNMLQKFGMLQCKPHSTPMAARLVLHKDENGKSVDKTQYRSMI 1107
            Q++Q+++ I LSQ  Y KN+++KFGM       TP    L L KDE G SVD++ YRSMI
Sbjct: 1275 QVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMI 1334

Query: 1108 GCLMYATASRPEITF 1152
            G L+Y TASRP+IT+
Sbjct: 1335 GSLLYLTASRPDITY 1349


>gb|ABF67921.1| Ji1 putative pol protein [Zea mays]
          Length = 1063

 Score =  343 bits (881), Expect = 6e-92
 Identities = 178/359 (49%), Positives = 235/359 (65%), Gaps = 4/359 (1%)
 Frame = +1

Query: 82   PEKSFPRV----TKDISTNDIIGDPYKGIQTRSQISQQTNYLCYLSQDEKDIVPQTTQEA 249
            P    PRV     +D   + I+GD +KG+ TRS+++    +  ++S  E    P   +EA
Sbjct: 505  PRPPHPRVHQAIQRDHPVDTILGDIHKGVTTRSRVAHFCEHYSFVSSIE----PHRVEEA 560

Query: 250  LKDDGWKAAMKDEIDQIKRTGTWVLVPRTSEMNVISCKWVFRNKFDEKGKFDRKRARIVA 429
            L+D  W  AM++E++   R   W LVPR ++ NV+  KWVFRNK DE G   R +AR+VA
Sbjct: 561  LQDSDWVVAMQEELNNFTRNEVWHLVPRPNQ-NVVGTKWVFRNKQDEHGVVTRNKARLVA 619

Query: 430  KGYKQVAGIDYEETFAPVARLEAVRTLIALAARLNIKLYQMDVKGAFLNGNLEEEVYMEQ 609
            KGY QV G+D+ ET+APVARLE++R L+A A     KLYQMDVK AFLNG ++EEVY+EQ
Sbjct: 620  KGYSQVEGLDFGETYAPVARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQ 679

Query: 610  PEGFEDEDHPSYVCHLKKALYGLKQAPRAWYGRLDSFLKSKGFIRGINDDTQYYLIKNEQ 789
            P GFED ++P++V  L KALYGLKQAPRAWY  L  FL + GF  G  D T +       
Sbjct: 680  PPGFEDSEYPNHVYRLSKALYGLKQAPRAWYECLRDFLIANGFKVGKADPTLFTKTLEND 739

Query: 790  ILIVEVYVDDILFGATDESLCHDFSNWMTSEFEMSMFQILKHFLGMQIRQIQNGIHLSQG 969
            + + ++YVDDI+FG+T+ES C +FS  MT +FEMSM   LK+FLG Q++Q+Q G  +SQ 
Sbjct: 740  LFVCQIYVDDIIFGSTNESTCEEFSRIMTQKFEMSMMGELKYFLGFQVKQLQEGTFISQT 799

Query: 970  TYLKNMLQKFGMLQCKPHSTPMAARLVLHKDENGKSVDKTQYRSMIGCLMYATASRPEI 1146
             Y +++L KFGM   KP  TPM     L  D  GKSVD+  YRSMIG L+Y  ASRP+I
Sbjct: 800  KYTQDILAKFGMKDAKPIKTPMGTNGHLDLDTGGKSVDQKVYRSMIGSLLYLCASRPDI 858


>gb|AAN40025.1| putative gag-pol polyprotein [Zea mays]
          Length = 1892

 Score =  343 bits (881), Expect = 6e-92
 Identities = 177/359 (49%), Positives = 236/359 (65%), Gaps = 4/359 (1%)
 Frame = +1

Query: 82   PEKSFPRV----TKDISTNDIIGDPYKGIQTRSQISQQTNYLCYLSQDEKDIVPQTTQEA 249
            P    PRV     +D   + I+GD +KG+ TRS+++    +  ++S  E    P   +EA
Sbjct: 1334 PRPPHPRVHQAIQRDHPVDTILGDIHKGVTTRSRVAHFCEHYSFVSSIE----PHRVEEA 1389

Query: 250  LKDDGWKAAMKDEIDQIKRTGTWVLVPRTSEMNVISCKWVFRNKFDEKGKFDRKRARIVA 429
            L+D  W  AM++E++   R   W LVPR ++ NV+  KWVFRNK DE G   R +AR+VA
Sbjct: 1390 LQDSDWVVAMQEELNNFTRNEVWHLVPRPNQ-NVVGTKWVFRNKQDEHGVVTRNKARLVA 1448

Query: 430  KGYKQVAGIDYEETFAPVARLEAVRTLIALAARLNIKLYQMDVKGAFLNGNLEEEVYMEQ 609
            KGY QV G+D++ET+APVARLE++R L+A A     KLYQMDVK AFLNG ++EEVY+EQ
Sbjct: 1449 KGYSQVEGLDFDETYAPVARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQ 1508

Query: 610  PEGFEDEDHPSYVCHLKKALYGLKQAPRAWYGRLDSFLKSKGFIRGINDDTQYYLIKNEQ 789
            P GFED ++P++V  L KALYGLKQAPRAWY  L  FL + GF  G  D T +       
Sbjct: 1509 PPGFEDSEYPNHVYRLSKALYGLKQAPRAWYECLRDFLIANGFKVGKADPTLFTKTLEND 1568

Query: 790  ILIVEVYVDDILFGATDESLCHDFSNWMTSEFEMSMFQILKHFLGMQIRQIQNGIHLSQG 969
            + + ++YVDDI+FG+T+ES C +FS  MT +FEMSM   LK+FLG Q++Q++ G  +SQ 
Sbjct: 1569 LFVCQIYVDDIIFGSTNESTCEEFSRIMTQKFEMSMMGELKYFLGFQVKQLREGTFISQT 1628

Query: 970  TYLKNMLQKFGMLQCKPHSTPMAARLVLHKDENGKSVDKTQYRSMIGCLMYATASRPEI 1146
             Y +++L KFGM   KP  TPM     L  D  GKSVD+  YRSMIG L+Y  ASRP+I
Sbjct: 1629 KYTQDILAKFGMKDAKPIKTPMGTNGHLDLDTGGKSVDQKVYRSMIGSLLYLCASRPDI 1687


>gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays]
          Length = 1760

 Score =  342 bits (878), Expect = 1e-91
 Identities = 174/348 (50%), Positives = 232/348 (66%)
 Frame = +1

Query: 103  VTKDISTNDIIGDPYKGIQTRSQISQQTNYLCYLSQDEKDIVPQTTQEALKDDGWKAAMK 282
            + +D   + I+GD +KG+ TRS+++    +  ++S  E    P   +EAL+D  W  AM+
Sbjct: 1213 IQQDHPVDTILGDIHKGVTTRSRVAHFCEHYSFVSSIE----PHRVEEALQDSDWVVAMQ 1268

Query: 283  DEIDQIKRTGTWVLVPRTSEMNVISCKWVFRNKFDEKGKFDRKRARIVAKGYKQVAGIDY 462
            +E++   R   W LVPR ++ NV+  KWVFRNK DE G   R +AR+VAKGY QV G+D+
Sbjct: 1269 EELNNFTRNEVWHLVPRPNQ-NVVGTKWVFRNKQDEHGVVTRNKARLVAKGYSQVEGLDF 1327

Query: 463  EETFAPVARLEAVRTLIALAARLNIKLYQMDVKGAFLNGNLEEEVYMEQPEGFEDEDHPS 642
             ET+APVARLE++R L+A A     KLYQMDVK AFLNG ++EEVY+EQP GFED ++P+
Sbjct: 1328 GETYAPVARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEYPN 1387

Query: 643  YVCHLKKALYGLKQAPRAWYGRLDSFLKSKGFIRGINDDTQYYLIKNEQILIVEVYVDDI 822
            +V  L KALYGLKQAPRAWY  L  FL + GF  G  D T +       + + ++YVDDI
Sbjct: 1388 HVYKLSKALYGLKQAPRAWYECLRDFLIANGFKVGKADPTLFTKTLENDLFVCQIYVDDI 1447

Query: 823  LFGATDESLCHDFSNWMTSEFEMSMFQILKHFLGMQIRQIQNGIHLSQGTYLKNMLQKFG 1002
            +FG+T+ES C +FS  MT +FEMSM   LK+FLG Q++Q+Q G  +SQ  Y +++L KFG
Sbjct: 1448 IFGSTNESTCEEFSRIMTQKFEMSMMGELKYFLGFQVKQLQEGTFISQTKYTQDILSKFG 1507

Query: 1003 MLQCKPHSTPMAARLVLHKDENGKSVDKTQYRSMIGCLMYATASRPEI 1146
            M   KP  TPM     L  D  GKSVD+  YRSMIG L+Y  ASRP+I
Sbjct: 1508 MKDAKPIKTPMGTNGHLDLDTGGKSVDQKVYRSMIGSLLYLCASRPDI 1555


>gb|AAG52949.1| gag/pol polyprotein [Arabidopsis thaliana]
          Length = 1643

 Score =  340 bits (873), Expect = 5e-91
 Identities = 184/404 (45%), Positives = 255/404 (63%), Gaps = 22/404 (5%)
 Frame = +1

Query: 1    NH-EDNSRLQNENTEIVKASSDSLANSIPEKSFPRVTKDISTNDIIGDP----------- 144
            NH E+ +  Q +N +I K+  +S     P +    V +D ++ DIIGDP           
Sbjct: 1047 NHGEERNDNQFDNGDINKSGEESDEEVPPAQ----VHRDHASKDIIGDPSGERVTRGVKQ 1102

Query: 145  ----YKGIQTRSQIS------QQTNYLCYLSQDEKDIVPQTTQEALKDDGWKAAMKDEID 294
                  GI+ + ++       ++  + C++S  E    P+  +EAL+D  W  AM++E++
Sbjct: 1103 DYRQLAGIKQKHRVMASFACFEEIMFSCFVSIVE----PKNVKEALEDHFWILAMEEELE 1158

Query: 295  QIKRTGTWVLVPRTSEMNVISCKWVFRNKFDEKGKFDRKRARIVAKGYKQVAGIDYEETF 474
            +  R   W LVPR  ++NVI  KW+F+NKFDE G   R +AR+VA+GY QV G+D++ETF
Sbjct: 1159 EFSRHQVWDLVPRPPQVNVIGTKWIFKNKFDEVGNITRNKARLVAQGYTQVEGLDFDETF 1218

Query: 475  APVARLEAVRTLIALAARLNIKLYQMDVKGAFLNGNLEEEVYMEQPEGFEDEDHPSYVCH 654
            APVARLE +R L+  A  +  KL+QMDVK AFLNG +EEEVY+EQP+GFE+ + P YV  
Sbjct: 1219 APVARLECIRFLLGTACGMGFKLHQMDVKCAFLNGIIEEEVYVEQPKGFENLEFPEYVYK 1278

Query: 655  LKKALYGLKQAPRAWYGRLDSFLKSKGFIRGINDDTQYYLIKNEQILIVEVYVDDILFGA 834
            LKKALYGLKQAPRAWY RL +FL  +G+ RG  D T +       I+I+++YVDDI+FG 
Sbjct: 1279 LKKALYGLKQAPRAWYERLTTFLIVQGYTRGSVDKTLFVKNDVHGIIIIQIYVDDIVFGG 1338

Query: 835  TDESLCHDFSNWMTSEFEMSMFQILKHFLGMQIRQIQNGIHLSQGTYLKNMLQKFGMLQC 1014
            T + L   F   MT+EF MSM   LK+FLG+QI Q   GI +SQ TY +N++++FGM   
Sbjct: 1339 TSDKLVKTFVKTMTTEFRMSMVGELKYFLGLQINQTDEGITISQSTYAQNLVKRFGMCSS 1398

Query: 1015 KPHSTPMAARLVLHKDENGKSVDKTQYRSMIGCLMYATASRPEI 1146
            KP  TPM+    L KDE G  VD+  YR MIG L+Y TA+RP++
Sbjct: 1399 KPAPTPMSTTTKLFKDEKGVKVDEKLYRGMIGSLLYLTATRPDL 1442


>gb|AAD20307.1| copia-type pol polyprotein [Zea mays]
          Length = 1063

 Score =  340 bits (872), Expect = 6e-91
 Identities = 176/359 (49%), Positives = 234/359 (65%), Gaps = 4/359 (1%)
 Frame = +1

Query: 82   PEKSFPRV----TKDISTNDIIGDPYKGIQTRSQISQQTNYLCYLSQDEKDIVPQTTQEA 249
            P    PRV     +D   + I+GD +KG+ TRS+++    +  ++S  E    P   +EA
Sbjct: 505  PRPPHPRVHQAIQRDHPVDTILGDIHKGVTTRSRVAHFCEHYSFVSSIE----PHRVEEA 560

Query: 250  LKDDGWKAAMKDEIDQIKRTGTWVLVPRTSEMNVISCKWVFRNKFDEKGKFDRKRARIVA 429
            L+D  W  AM++E++   R   W LVPR ++ NV+  KWVFRNK DE G   R +AR+VA
Sbjct: 561  LQDSDWVVAMQEELNNFTRNEVWHLVPRPNQ-NVVGTKWVFRNKQDEHGVVTRNKARLVA 619

Query: 430  KGYKQVAGIDYEETFAPVARLEAVRTLIALAARLNIKLYQMDVKGAFLNGNLEEEVYMEQ 609
            KGY QV G+D+ ET+APVARLE++R L+A A     KLYQMDVK AFLNG ++EEVY+EQ
Sbjct: 620  KGYSQVEGLDFGETYAPVARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQ 679

Query: 610  PEGFEDEDHPSYVCHLKKALYGLKQAPRAWYGRLDSFLKSKGFIRGINDDTQYYLIKNEQ 789
            P GFED ++P++V  L KALYGLKQAPRAWY  L  FL + GF  G  D T +       
Sbjct: 680  PPGFEDSEYPNHVYRLSKALYGLKQAPRAWYECLRDFLIANGFKVGKADPTLFTKTLEND 739

Query: 790  ILIVEVYVDDILFGATDESLCHDFSNWMTSEFEMSMFQILKHFLGMQIRQIQNGIHLSQG 969
            + + ++YVDDI+FG+T++S C +FS  MT +FEMSM   LK+FLG Q++Q+Q G  + Q 
Sbjct: 740  LFVCQIYVDDIIFGSTNKSTCEEFSRIMTQKFEMSMMGELKYFLGFQVKQLQEGTFICQT 799

Query: 970  TYLKNMLQKFGMLQCKPHSTPMAARLVLHKDENGKSVDKTQYRSMIGCLMYATASRPEI 1146
             Y +++L KFGM   KP  TPM     L  D  GKSVD+  YRSMIG L+Y  ASRP+I
Sbjct: 800  KYTQDILTKFGMKDAKPIKTPMGTNGHLDLDTGGKSVDQKVYRSMIGSLLYLCASRPDI 858


>gb|AAL66759.1|AF464738_10 putative pol protein [Zea mays]
          Length = 1657

 Score =  339 bits (869), Expect = 1e-90
 Identities = 172/348 (49%), Positives = 233/348 (66%)
 Frame = +1

Query: 103  VTKDISTNDIIGDPYKGIQTRSQISQQTNYLCYLSQDEKDIVPQTTQEALKDDGWKAAMK 282
            + +D   + I+GD  KG+ TRS++     +  ++S  E    P   +EAL D  W  AM+
Sbjct: 1111 IQRDHPVDQILGDISKGVTTRSRLVNFCEHYSFVSSIE----PFRVEEALLDPDWVLAMQ 1166

Query: 283  DEIDQIKRTGTWVLVPRTSEMNVISCKWVFRNKFDEKGKFDRKRARIVAKGYKQVAGIDY 462
            +E++  KR   W LVPR  + NV+  KWVFRNK DE G   R +AR+VAKGY QVAG+D+
Sbjct: 1167 EELNNFKRNEVWTLVPRPKQ-NVVGTKWVFRNKQDEHGVVTRNKARLVAKGYAQVAGLDF 1225

Query: 463  EETFAPVARLEAVRTLIALAARLNIKLYQMDVKGAFLNGNLEEEVYMEQPEGFEDEDHPS 642
            EETFAPVARLE++R L+A AA  + +LYQMDVK AFLNG ++EEVY+EQP GFEDE +P 
Sbjct: 1226 EETFAPVARLESIRILLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERYPD 1285

Query: 643  YVCHLKKALYGLKQAPRAWYGRLDSFLKSKGFIRGINDDTQYYLIKNEQILIVEVYVDDI 822
            +VC L KALYGLKQAPRAWY  L  FL +  F  G  D T +    +  + + ++YVDDI
Sbjct: 1286 HVCKLSKALYGLKQAPRAWYECLRDFLLANAFKVGKADPTLFTKTCDGDLFVCQIYVDDI 1345

Query: 823  LFGATDESLCHDFSNWMTSEFEMSMFQILKHFLGMQIRQIQNGIHLSQGTYLKNMLQKFG 1002
            +FG+T++  C +FS  MT +FEMSM   L +FLG Q++Q+++G  +SQ  Y +++L++FG
Sbjct: 1346 IFGSTNQKSCEEFSRVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFG 1405

Query: 1003 MLQCKPHSTPMAARLVLHKDENGKSVDKTQYRSMIGCLMYATASRPEI 1146
            M   KP  TPM        ++ GKSVD+  YRSMIG L+Y  ASRP+I
Sbjct: 1406 MKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDI 1453


>gb|AAC49502.1| Pol [Zea mays]
          Length = 1068

 Score =  339 bits (869), Expect = 1e-90
 Identities = 172/348 (49%), Positives = 234/348 (67%)
 Frame = +1

Query: 103  VTKDISTNDIIGDPYKGIQTRSQISQQTNYLCYLSQDEKDIVPQTTQEALKDDGWKAAMK 282
            + +D   + I+GD  KG+ TRS++     +  ++S  E    P   +EAL D  W  AM+
Sbjct: 522  IQRDHPVDQILGDISKGVTTRSRLVNFCEHNSFVSSIE----PFRVEEALLDPDWVLAMQ 577

Query: 283  DEIDQIKRTGTWVLVPRTSEMNVISCKWVFRNKFDEKGKFDRKRARIVAKGYKQVAGIDY 462
            +E++  KR   W LVPR  + NV+  KWVFRNK DE+G   R +AR+VAKGY QVAG+D+
Sbjct: 578  EELNNFKRNEVWTLVPRPKQ-NVVGTKWVFRNKQDERGVVTRNKARLVAKGYAQVAGLDF 636

Query: 463  EETFAPVARLEAVRTLIALAARLNIKLYQMDVKGAFLNGNLEEEVYMEQPEGFEDEDHPS 642
            EETFAPVARLE++R L+A AA  + +LYQMDVK AFLNG ++EEVY+EQP GFEDE +P 
Sbjct: 637  EETFAPVARLESIRILLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERYPD 696

Query: 643  YVCHLKKALYGLKQAPRAWYGRLDSFLKSKGFIRGINDDTQYYLIKNEQILIVEVYVDDI 822
            +VC L KALYGLKQAPRAWY  L  FL +  F  G  D T +    +  + + ++YVDDI
Sbjct: 697  HVCKLSKALYGLKQAPRAWYECLRDFLIANAFKVGKADPTLFTKTCDGDLFVCQIYVDDI 756

Query: 823  LFGATDESLCHDFSNWMTSEFEMSMFQILKHFLGMQIRQIQNGIHLSQGTYLKNMLQKFG 1002
            +FG+T++  C +FS  MT +FEMSM   L +FLG Q++Q+++G  +SQ  Y +++L++FG
Sbjct: 757  IFGSTNQKSCEEFSRVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFG 816

Query: 1003 MLQCKPHSTPMAARLVLHKDENGKSVDKTQYRSMIGCLMYATASRPEI 1146
            M   KP  TPM        ++ GKSVD+  YRSMIG L+Y  ASRP+I
Sbjct: 817  MKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDI 864


>gb|AEJ07931.1| Opie3 pol protein [Zea mays subsp. mexicana]
          Length = 1048

 Score =  338 bits (867), Expect = 2e-90
 Identities = 171/348 (49%), Positives = 233/348 (66%)
 Frame = +1

Query: 103  VTKDISTNDIIGDPYKGIQTRSQISQQTNYLCYLSQDEKDIVPQTTQEALKDDGWKAAMK 282
            + +D   + I+GD  KG+ TRS++     +  ++S  E    P   +EAL D  W  AM+
Sbjct: 502  IQRDHPVDQILGDISKGVTTRSRLVNFCEHYSFVSSIE----PFRVEEALLDPDWVLAMQ 557

Query: 283  DEIDQIKRTGTWVLVPRTSEMNVISCKWVFRNKFDEKGKFDRKRARIVAKGYKQVAGIDY 462
            +E++  KR   W LVPR  + NV+  KWVFRNK DE G   R +AR+VAKGY QVAG+D+
Sbjct: 558  EELNNFKRNEVWTLVPRPKQ-NVVGTKWVFRNKQDEHGVVTRNKARLVAKGYAQVAGLDF 616

Query: 463  EETFAPVARLEAVRTLIALAARLNIKLYQMDVKGAFLNGNLEEEVYMEQPEGFEDEDHPS 642
            EETFAPVARLE++R L+A AA  + +LYQMDVK AFLNG ++EEVY+EQP GFEDE +P 
Sbjct: 617  EETFAPVARLESIRILLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERYPD 676

Query: 643  YVCHLKKALYGLKQAPRAWYGRLDSFLKSKGFIRGINDDTQYYLIKNEQILIVEVYVDDI 822
            +VC L KALYGLKQAPRAWY  L  FL +  F  G  D T +    +  + + ++YVDDI
Sbjct: 677  HVCKLSKALYGLKQAPRAWYECLRDFLIANAFKVGKADPTLFTKTCDGDLFVCQIYVDDI 736

Query: 823  LFGATDESLCHDFSNWMTSEFEMSMFQILKHFLGMQIRQIQNGIHLSQGTYLKNMLQKFG 1002
            +FG+T++  C +FS  MT +FEMSM   L +FLG Q++Q+++G  +SQ  Y +++L++FG
Sbjct: 737  IFGSTNQKSCEEFSRVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFG 796

Query: 1003 MLQCKPHSTPMAARLVLHKDENGKSVDKTQYRSMIGCLMYATASRPEI 1146
            M   KP  TPM        ++ GKS+D+  YRSMIG L+Y  ASRP+I
Sbjct: 797  MKDAKPAKTPMGTDGHTDLNKGGKSIDQKAYRSMIGSLLYLCASRPDI 844


>gb|AEJ07899.1| Opie3 putative pol protein [Zea mays subsp. mexicana]
          Length = 1048

 Score =  338 bits (866), Expect = 3e-90
 Identities = 172/348 (49%), Positives = 232/348 (66%)
 Frame = +1

Query: 103  VTKDISTNDIIGDPYKGIQTRSQISQQTNYLCYLSQDEKDIVPQTTQEALKDDGWKAAMK 282
            + +D   + I+GD  KG+ TRS++     +  ++S  E    P   +EAL D  W  AM+
Sbjct: 502  IQRDHPVDQILGDISKGVTTRSRLVNFCEHYSFVSSIE----PFRVEEALLDPDWVLAMQ 557

Query: 283  DEIDQIKRTGTWVLVPRTSEMNVISCKWVFRNKFDEKGKFDRKRARIVAKGYKQVAGIDY 462
            +E++  KR   W LVPR  + NV+  KWVFRNK DE G   R +AR+VAKGY QVAG+D+
Sbjct: 558  EELNNFKRNEVWTLVPRPKQ-NVVGTKWVFRNKQDEHGMVTRNKARLVAKGYAQVAGLDF 616

Query: 463  EETFAPVARLEAVRTLIALAARLNIKLYQMDVKGAFLNGNLEEEVYMEQPEGFEDEDHPS 642
            EETFAPVARLE++R L+A AA  + +LYQMDVK AFLNG ++EEVY+EQP GFEDE +P 
Sbjct: 617  EETFAPVARLESIRILLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERYPD 676

Query: 643  YVCHLKKALYGLKQAPRAWYGRLDSFLKSKGFIRGINDDTQYYLIKNEQILIVEVYVDDI 822
            +VC L KALYGLKQAPRAWY  L  FL    F  G  D T +    +  + + ++YVDDI
Sbjct: 677  HVCKLSKALYGLKQAPRAWYECLRDFLIVNAFKVGKADPTLFTKTCDGDLFVCQIYVDDI 736

Query: 823  LFGATDESLCHDFSNWMTSEFEMSMFQILKHFLGMQIRQIQNGIHLSQGTYLKNMLQKFG 1002
            +FG+T++  C +FS  MT +FEMSM   L +FLG Q++Q+++G  +SQ  Y +++L++FG
Sbjct: 737  IFGSTNQKSCEEFSRVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFG 796

Query: 1003 MLQCKPHSTPMAARLVLHKDENGKSVDKTQYRSMIGCLMYATASRPEI 1146
            M   KP  TPM        ++ GKSVD+  YRSMIG L+Y  ASRP+I
Sbjct: 797  MKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDI 844


>gb|AEJ07927.1| Opie2 pol protein [Zea mays subsp. mexicana]
          Length = 1048

 Score =  337 bits (865), Expect = 4e-90
 Identities = 172/348 (49%), Positives = 232/348 (66%)
 Frame = +1

Query: 103  VTKDISTNDIIGDPYKGIQTRSQISQQTNYLCYLSQDEKDIVPQTTQEALKDDGWKAAMK 282
            + +D   + I+GD  KG+ TRS++     +  ++S  E    P   +EAL D  W  AM+
Sbjct: 502  IQRDHPVDQILGDISKGVTTRSRLVNFCEHYSFVSSIE----PFRVEEALLDPDWVLAMQ 557

Query: 283  DEIDQIKRTGTWVLVPRTSEMNVISCKWVFRNKFDEKGKFDRKRARIVAKGYKQVAGIDY 462
            +E++  KR   W LVPR  + NV+  KWVFRNK DE G   R +AR+VAKGY QVAG+D+
Sbjct: 558  EELNNFKRNEVWTLVPRPKQ-NVVGTKWVFRNKQDEHGVVTRNKARLVAKGYAQVAGLDF 616

Query: 463  EETFAPVARLEAVRTLIALAARLNIKLYQMDVKGAFLNGNLEEEVYMEQPEGFEDEDHPS 642
            EETFAPVARLE++R L+A AA  + +LYQMDVK AFLNG ++EEVY+EQP GFEDE +P 
Sbjct: 617  EETFAPVARLESIRILLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERYPD 676

Query: 643  YVCHLKKALYGLKQAPRAWYGRLDSFLKSKGFIRGINDDTQYYLIKNEQILIVEVYVDDI 822
            +VC L KALYGLKQAPRAWY  L  FL    F  G  D T +    +  + + ++YVDDI
Sbjct: 677  HVCKLSKALYGLKQAPRAWYECLRDFLIVNAFKVGKADPTLFTKTCDGDLFVCQIYVDDI 736

Query: 823  LFGATDESLCHDFSNWMTSEFEMSMFQILKHFLGMQIRQIQNGIHLSQGTYLKNMLQKFG 1002
            +FG+T++  C +FS  MT +FEMSM   L +FLG Q++Q+++G  +SQ  Y +++L++FG
Sbjct: 737  IFGSTNQKSCEEFSRVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFG 796

Query: 1003 MLQCKPHSTPMAARLVLHKDENGKSVDKTQYRSMIGCLMYATASRPEI 1146
            M   KP  TPM        ++ GKSVD+  YRSMIG L+Y  ASRP+I
Sbjct: 797  MKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDI 844


>gb|ABF67947.1| Opie2 pol protein [Zea mays]
          Length = 1048

 Score =  337 bits (865), Expect = 4e-90
 Identities = 172/348 (49%), Positives = 232/348 (66%)
 Frame = +1

Query: 103  VTKDISTNDIIGDPYKGIQTRSQISQQTNYLCYLSQDEKDIVPQTTQEALKDDGWKAAMK 282
            + +D   + I+GD  KG+ TRS++     +  ++S  E    P   +EAL D  W  AM+
Sbjct: 502  IQRDHPVDQILGDISKGVTTRSRLVNFCEHYSFVSSIE----PFRVEEALLDPDWVLAMQ 557

Query: 283  DEIDQIKRTGTWVLVPRTSEMNVISCKWVFRNKFDEKGKFDRKRARIVAKGYKQVAGIDY 462
            +E++  KR   W LVPR  + NV+  KWVFRNK DE G   R +AR+VAKGY QVAG+D+
Sbjct: 558  EELNNFKRNEVWTLVPRPKQ-NVVGTKWVFRNKQDEHGVVTRNKARLVAKGYAQVAGLDF 616

Query: 463  EETFAPVARLEAVRTLIALAARLNIKLYQMDVKGAFLNGNLEEEVYMEQPEGFEDEDHPS 642
            EETFAPVARLE++R L+A AA  + +LYQMDVK AFLNG ++EEVY+EQP GFEDE +P 
Sbjct: 617  EETFAPVARLESIRILLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERYPD 676

Query: 643  YVCHLKKALYGLKQAPRAWYGRLDSFLKSKGFIRGINDDTQYYLIKNEQILIVEVYVDDI 822
            +VC L KALYGLKQAPRAWY  L  FL    F  G  D T +    +  + + ++YVDDI
Sbjct: 677  HVCKLSKALYGLKQAPRAWYECLRDFLIVNAFKVGKADPTLFTKTCDGDLFVCQIYVDDI 736

Query: 823  LFGATDESLCHDFSNWMTSEFEMSMFQILKHFLGMQIRQIQNGIHLSQGTYLKNMLQKFG 1002
            +FG+T++  C +FS  MT +FEMSM   L +FLG Q++Q+++G  +SQ  Y +++L++FG
Sbjct: 737  IFGSTNQKSCEEFSRVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFG 796

Query: 1003 MLQCKPHSTPMAARLVLHKDENGKSVDKTQYRSMIGCLMYATASRPEI 1146
            M   KP  TPM        ++ GKSVD+  YRSMIG L+Y  ASRP+I
Sbjct: 797  MKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDI 844


>gb|AEJ07944.1| Opie1 putative pol protein [Zea diploperennis]
          Length = 1065

 Score =  337 bits (864), Expect = 5e-90
 Identities = 171/348 (49%), Positives = 233/348 (66%)
 Frame = +1

Query: 103  VTKDISTNDIIGDPYKGIQTRSQISQQTNYLCYLSQDEKDIVPQTTQEALKDDGWKAAMK 282
            + +D   + I+GD  KG+ TRS+++    +  ++S  E    P   +EAL D  W  AM+
Sbjct: 519  IQRDHPVDQILGDISKGVTTRSRLANFCEHYSFVSSIE----PFRVEEALLDPDWVLAMQ 574

Query: 283  DEIDQIKRTGTWVLVPRTSEMNVISCKWVFRNKFDEKGKFDRKRARIVAKGYKQVAGIDY 462
            +E++  KR   W LVPR  + NV+  KWVFRNK DE G   R +AR+VAKGY QVAG+D+
Sbjct: 575  EELNNFKRNEVWTLVPRPKQ-NVVGTKWVFRNKQDEHGVVTRNKARLVAKGYAQVAGLDF 633

Query: 463  EETFAPVARLEAVRTLIALAARLNIKLYQMDVKGAFLNGNLEEEVYMEQPEGFEDEDHPS 642
            EETFAPVARLE++R L+A AA  + +L+QMDVK AFLNG ++EEVY+EQP GFEDE +P 
Sbjct: 634  EETFAPVARLESIRILLAYAAHHSFRLFQMDVKSAFLNGPIKEEVYVEQPPGFEDERYPD 693

Query: 643  YVCHLKKALYGLKQAPRAWYGRLDSFLKSKGFIRGINDDTQYYLIKNEQILIVEVYVDDI 822
            +VC L KALYGLKQAPRAWY  L  FL +  F  G  D T +    +  +   ++YVDDI
Sbjct: 694  HVCKLSKALYGLKQAPRAWYECLRDFLIANAFKVGKADPTLFTKTCDGDLFACQIYVDDI 753

Query: 823  LFGATDESLCHDFSNWMTSEFEMSMFQILKHFLGMQIRQIQNGIHLSQGTYLKNMLQKFG 1002
            +FG+T++  C +FS  MT +FEMSM   L +FLG Q+RQ+++G  +SQ  Y ++++++FG
Sbjct: 754  IFGSTNQKSCEEFSRVMTQKFEMSMMGELSYFLGFQVRQLKDGTFISQTKYTQDLIKRFG 813

Query: 1003 MLQCKPHSTPMAARLVLHKDENGKSVDKTQYRSMIGCLMYATASRPEI 1146
            M   KP  TPM        ++ GKSVD+  YRSMIG L+Y  ASRP+I
Sbjct: 814  MKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDI 861


>gb|ABE88110.1| Reverse transcriptase (RNA-dependent DNA polymerase), putative
            [Medicago truncatula]
          Length = 1654

 Score =  336 bits (862), Expect = 9e-90
 Identities = 176/341 (51%), Positives = 226/341 (66%)
 Frame = +1

Query: 130  IIGDPYKGIQTRSQISQQTNYLCYLSQDEKDIVPQTTQEALKDDGWKAAMKDEIDQIKRT 309
            IIG      +TRS   Q+   +  LS  E    P+T +EAL DDGW  +M++E++Q +R 
Sbjct: 1118 IIGSKDSPRRTRSHFRQEETLIGLLSIIE----PKTVEEALSDDGWILSMQEELNQFQRN 1173

Query: 310  GTWVLVPRTSEMNVISCKWVFRNKFDEKGKFDRKRARIVAKGYKQVAGIDYEETFAPVAR 489
              W LVP+  + N+I  KWVFRNK +E+G+  R +AR+VA+GY Q  GIDY ETFAPVAR
Sbjct: 1174 DVWDLVPKPFQKNIIGTKWVFRNKQNEQGEVTRNKARLVAQGYSQQEGIDYTETFAPVAR 1233

Query: 490  LEAVRTLIALAARLNIKLYQMDVKGAFLNGNLEEEVYMEQPEGFEDEDHPSYVCHLKKAL 669
            LEA+R L++ A    I LYQMDVK A LNG +EEEVY++QP GFED  HP +V  LKK+L
Sbjct: 1234 LEAIRLLLSYAINHGIILYQMDVKSALLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSL 1293

Query: 670  YGLKQAPRAWYGRLDSFLKSKGFIRGINDDTQYYLIKNEQILIVEVYVDDILFGATDESL 849
            YGLKQAPRAWY RL +FL    F RG  D T +     + ILIV++YVDDI+FG+T+ SL
Sbjct: 1294 YGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASL 1353

Query: 850  CHDFSNWMTSEFEMSMFQILKHFLGMQIRQIQNGIHLSQGTYLKNMLQKFGMLQCKPHST 1029
            C +FS  M  EFEMSM   LK FL +QI Q + G+++ Q  Y K +L+KF +  CK   T
Sbjct: 1354 CKEFSKLMQDEFEMSMMGELKFFLVIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMYT 1413

Query: 1030 PMAARLVLHKDENGKSVDKTQYRSMIGCLMYATASRPEITF 1152
            PM     L K++ G  VD+  YR MIG L+Y TASRP+I F
Sbjct: 1414 PMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILF 1454