BLASTX nr result
ID: Ephedra25_contig00003084
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra25_contig00003084
(2903 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V... 822 0.0
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 822 0.0
gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobro... 820 0.0
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 818 0.0
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu... 814 0.0
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis] 813 0.0
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 813 0.0
gb|ESW25208.1| hypothetical protein PHAVU_003G016600g [Phaseolus... 813 0.0
gb|ESW25207.1| hypothetical protein PHAVU_003G016600g [Phaseolus... 813 0.0
gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tu... 813 0.0
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 811 0.0
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa... 809 0.0
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 808 0.0
ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 808 0.0
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper... 807 0.0
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 806 0.0
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 801 0.0
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 799 0.0
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [... 795 0.0
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum] 789 0.0
>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 822 bits (2124), Expect = 0.0
Identities = 430/865 (49%), Positives = 572/865 (66%), Gaps = 7/865 (0%)
Frame = -1
Query: 2609 AELKNMLKCTLHMCCPIAEYAFCVLHSTTEVLVDLETNSRKICMYLQDNSGEYKLELSYT 2430
A L +M + TLH C +++ FCVL V V + RK +L S EYKLELSY
Sbjct: 92 AFLHSMDRITLHFGCQMSDERFCVLWKAINVSVKFGSGLRKFYFFLSHGSEEYKLELSYE 151
Query: 2429 DTWYVIGGQLKDSENKIALLRLRHAPRVYYRIYGYTNSKLKQRRENVCEWVRTTDYTASG 2250
+ W + + K L++L AP++Y + + K+ ++ +WVR D+T S
Sbjct: 152 NIWQIQLQHPRGQITKFLLIQLLGAPQIYEKDVPVLSYYFKEAPDD--QWVREIDFTPSC 209
Query: 2249 SIAKSSFFGWEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTPNTKNLAILNPPEGCD 2070
I +S E+ +E F +Y++++ LE ++ N + IL PP+G
Sbjct: 210 FIGQSFALCLELPYGSQLPNFRENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSS 269
Query: 2069 VPFSVIFKLNALLQCGTISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLECNAENIVHKPF 1890
+PF ++FK+N L+Q G +S PTLD FF + +R ++ ++ A KL + + ++P
Sbjct: 270 LPFQILFKINTLVQNGCLSGPTLDTSFFRLVDPERFPISFIEHALEKLY-HLKECCYEPV 328
Query: 1889 DWLGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSNRVLRHFAE 1710
WL E+ + + L GL Y+ +V +TP ++YFC PE+ VSNRVLR++ E
Sbjct: 329 RWLSEQYRTYVKKPV-AGSPAISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPE 387
Query: 1709 HIENFLRVSFVDENRACLRSSDLSWNTGNRSTKKCTDIYQRILDVLQEGIVIGNKKFEFL 1530
I+NFLRVSF+DEN + S+ +S + T +Y+RIL +LQ GIVIG+KKF+FL
Sbjct: 388 DIDNFLRVSFLDENLEKIHSTVISPRMSKEGRR--TGVYRRILSILQNGIVIGDKKFDFL 445
Query: 1529 AYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSFSSSTETYDIQ 1350
A+SSSQLR++S WMFAS ++A IR WMG+F I+NVAK A+R+GQSFSSS ET +
Sbjct: 446 AFSSSQLRDNSAWMFASRPGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVA 505
Query: 1349 KNDFEFINDIELERNGKKYIFSDGIGKISVAFAEQVAKKCGFDGKIPSAFQIRYAGYKGV 1170
K++ E I DIE+ + Y+FSDGIGKIS A +VA KCG PSAFQIRY GYKGV
Sbjct: 506 KDEIENIPDIEIHKGRTTYVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGV 565
Query: 1169 VAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKDNVFE 990
VA+DPT +S KLSLR SM KY S N +LDVL+W+KY+P +LNRQ+I LLSTLGVKD+VFE
Sbjct: 566 VAVDPT-SSRKLSLRKSMFKYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFE 624
Query: 989 TLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMMLEEFR 810
Q A+ +D+ L+D A E L+ M GEN N+L +MLMCGY P +EP+L MML+ FR
Sbjct: 625 KKQRAAVDQLDTILKDPVAAQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFR 684
Query: 809 ASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHPSEKKKCYDD-------K 651
A+KLLEL+ + RIFV NGR++MGCLDETRTL+YGEVF+QI+ ++ D
Sbjct: 685 AAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGS 744
Query: 650 YQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGTRPHPNECSGSD 471
+ +EGK+VVAKNPCLHPGD+R+L AV P L HMVDC+VFPQ+G RPHPNECSGSD
Sbjct: 745 HHDNFILEGKIVVAKNPCLHPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSD 804
Query: 470 LDGDIYFVSWDHILIPPQDYQPMDYFSRPPKELDHEVTMKEIQEHFVNHMVNDTLGIIAN 291
LDGDIYFV WD LIPPQ PMDY P K LDH+V ++E++E+F N++VND+LGIIAN
Sbjct: 805 LDGDIYFVCWDRDLIPPQQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIAN 864
Query: 290 GHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFPKEYPDFMEKDDKNT 111
H +FAD+E D A C LA+L SIAVDFPKTG+PAE+PR L KEYPDFMEK DK T
Sbjct: 865 AHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPT 924
Query: 110 YISDRILGKLYRSVKGVATLDNNIR 36
Y S ++GKL+R VK +A + NIR
Sbjct: 925 YESQSVIGKLFREVKDIAPHNCNIR 949
>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
vesca]
Length = 1119
Score = 822 bits (2122), Expect = 0.0
Identities = 433/865 (50%), Positives = 575/865 (66%), Gaps = 10/865 (1%)
Frame = -1
Query: 2603 LKNMLKCTLHMCCPIAEYAFCVLHSTTEVLVDLETNSRKICMYLQDNSGEYKLELSYTDT 2424
L ++ LH+ C +A+ F VL T EV VD R + L Y+L+LSY +
Sbjct: 92 LHSLRDLVLHVGCQVAKDKFSVLWGTAEVSVDFGFGMRNLQFRLLYRQKVYRLQLSYENI 151
Query: 2423 WYVIGGQLKDSENKIALLRLRHAPRVYYRIY------GYTNSKLKQRRENVCEWVRTTDY 2262
W + + K +++L PR+Y + GY + + + +WVRTTD+
Sbjct: 152 WQIELHHQRGRSAKYLVIQLYGNPRIYQQEVCSSGGNGYEDMNYFRDPD---DWVRTTDF 208
Query: 2261 TASGSIAKSSFFGWEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTPNTKNLAILNPP 2082
T I +SS ++ +E F +Y+K++ LE F+ N + I+ P
Sbjct: 209 TPGSCIGQSSSLCLVLTSDGELPDFEENFAYYKKTDGQFILENGSTFSRNRDLVPIVGSP 268
Query: 2081 EGCDVPFSVIFKLNALLQCGTISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLECNAENIV 1902
G D+P+ ++FK+N L+Q G +S PTLDN F+ + +R S ++ A KL N +
Sbjct: 269 AGIDLPYDILFKINLLVQQGCLSGPTLDNNFYRLVDPRRISRPCIEFALDKLS-NLKESC 327
Query: 1901 HKPFDWLGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSNRVLR 1722
++P WL E+ + S + L GL Y+ +V +TPS++YF PE+ VSNR+LR
Sbjct: 328 YEPAVWLNEEYRKYMMSKKPPKPALISLDSGLVYVRRVQITPSKVYFSGPEVNVSNRILR 387
Query: 1721 HFAEHIENFLRVSFVDENRACLRSSDLSWNTGNRSTKKCTDIYQRILDVLQEGIVIGNKK 1542
++ I+NFLRVSFVDE L S+DLS T R T+ IY R+L VL++GIV+G KK
Sbjct: 388 QYSSDIDNFLRVSFVDEEMEKLYSTDLSPRTSTRKTR----IYNRVLSVLRDGIVVGKKK 443
Query: 1541 FEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSFSSSTET 1362
FEFLA+SSSQLRE+SLWMFA T SAD+IR MG+F I+NVAK A+R+GQSF SSTET
Sbjct: 444 FEFLAFSSSQLRENSLWMFAPTDEDSADTIRAGMGDFRQIRNVAKYAARLGQSFGSSTET 503
Query: 1361 YDIQKNDFEFINDIELERNGKKYIFSDGIGKISVAFAEQVAKKCGFDGKIPSAFQIRYAG 1182
+ +N+ E I D+ + G KY+FSDGIGKIS FAE+VAKKCG+ PSAFQIRY G
Sbjct: 504 LSVGRNEMEVIPDVTVNSCGIKYVFSDGIGKISADFAERVAKKCGYKAFTPSAFQIRYGG 563
Query: 1181 YKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKD 1002
YKGVVA+DPT +S KLSLR SM KY S N LDVL+ +KY+PC+LNRQ+I LLSTL V+D
Sbjct: 564 YKGVVAVDPT-SSMKLSLRKSMSKYESENTKLDVLACSKYQPCFLNRQLITLLSTLEVQD 622
Query: 1001 NVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMML 822
+VF Q A+ +++ L D KA E L M +GE+ N+L ++LMCGY P EP+L MML
Sbjct: 623 HVFLKKQRAAVQQLNAILTDPLKAEEALDLMSAGESTNVLKELLMCGYKPNVEPFLSMML 682
Query: 821 EEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHPSEKKK----CYDD 654
+ FRASKLLEL+ + RIF+ +GRA+MGCLDETRTL+YG+VF+Q + ++ C
Sbjct: 683 QTFRASKLLELRTKTRIFIPDGRAMMGCLDETRTLEYGQVFVQFSGKRRRQLFDDICIHS 742
Query: 653 KYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGTRPHPNECSGS 474
+EGKVVVAKNPCLHPGD+R+L AV P L HMVDC+VFPQ+G RPHPNECSGS
Sbjct: 743 SLDSCFIIEGKVVVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGHRPHPNECSGS 802
Query: 473 DLDGDIYFVSWDHILIPPQDYQPMDYFSRPPKELDHEVTMKEIQEHFVNHMVNDTLGIIA 294
DLDGDIYFV WD LIPP+ QPMDY PP E+D +VT++E++E+FVN++VND+LGIIA
Sbjct: 803 DLDGDIYFVCWDPELIPPKQIQPMDYTPAPPIEMDQDVTIEEVEEYFVNYIVNDSLGIIA 862
Query: 293 NGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFPKEYPDFMEKDDKN 114
N H +FAD + D A S CL+LA+L SIAVDFPKTG+PAE+P EL+ KEYPDFMEK DK
Sbjct: 863 NAHTVFADSKLDKAMSHPCLQLAKLFSIAVDFPKTGVPAEIPPELYAKEYPDFMEKPDKR 922
Query: 113 TYISDRILGKLYRSVKGVATLDNNI 39
TYIS ++G+L+R VK +A D++I
Sbjct: 923 TYISHNVIGQLFREVKDIAPHDSSI 947
>gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase
1 isoform 1 [Theobroma cacao] gi|508709489|gb|EOY01386.1|
RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
cacao]
Length = 1109
Score = 820 bits (2117), Expect = 0.0
Identities = 434/862 (50%), Positives = 576/862 (66%), Gaps = 6/862 (0%)
Frame = -1
Query: 2603 LKNMLKCTLHMCCPIAEYAFCVLHSTTEVLVDLETNSRKICMYLQDNSGEYKLELSYTDT 2424
L M TLH C ++ F VL +V V+ RK+ L + EY+L+L Y +
Sbjct: 93 LHTMEGVTLHFGCQVSNEKFYVLWEEVDVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENI 152
Query: 2423 WYVIGGQLKDSENKIALLRLRHAPRVYYRIYGYTNSKLKQRRENVC------EWVRTTDY 2262
W + + ++ +K L++L APR+Y + + + N +WVRTTD+
Sbjct: 153 WQIELHRPRNQTSKYLLIQLFGAPRIYEKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDF 212
Query: 2261 TASGSIAKSSFFGWEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTPNTKNLAILNPP 2082
T S I +SS E+ + +E F +Y++SE LE ++ N + I+ P
Sbjct: 213 TQSSCIGQSSVLCLELPYYLQLPNFRENFAYYKESEGKFVLESGSSYSRNLNLVPIVGPS 272
Query: 2081 EGCDVPFSVIFKLNALLQCGTISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLECNAENIV 1902
G D+P+ ++FK+N L+Q G I P LD F+ ++ R + A KL E
Sbjct: 273 LGIDLPYEILFKINLLVQNGCIPGPALDANFYRLVNPCRIDKVYIDHALEKLYYLKE-CC 331
Query: 1901 HKPFDWLGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSNRVLR 1722
+P WL E+ K S +N + L GL + +V +TPSR+YFC PEI VSNRVLR
Sbjct: 332 FEPSKWLLEQYKGYIASKKNPGSPVISLDDGLVNVRRVQITPSRVYFCGPEINVSNRVLR 391
Query: 1721 HFAEHIENFLRVSFVDENRACLRSSDLSWNTGNRSTKKCTDIYQRILDVLQEGIVIGNKK 1542
HF + I+NFLR++FVDE + S+DL T NR T+IY RIL L+ GIVIG+K+
Sbjct: 392 HFHDDIDNFLRITFVDEELEKIHSTDLL--TRNR----ITEIYGRILSTLKNGIVIGDKQ 445
Query: 1541 FEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSFSSSTET 1362
FEFLA+SSSQLRE+S WMFAS ++A IR WMG F I+NVAK A+R+GQSFSSSTET
Sbjct: 446 FEFLAFSSSQLRENSAWMFASREGLTAADIRTWMGEFSKIRNVAKYAARLGQSFSSSTET 505
Query: 1361 YDIQKNDFEFINDIELERNGKKYIFSDGIGKISVAFAEQVAKKCGFDGKIPSAFQIRYAG 1182
+ K++ E I+D+E++R+G Y+FSDGIGKIS FA++VA KC +G+ PSAFQIR G
Sbjct: 506 LSVAKDEIEIIDDVEIKRDGINYVFSDGIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGG 565
Query: 1181 YKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKD 1002
+KGVVA+DPT +S KLSLR SM KY S N LDVL+W+KY+PC+LNRQ+I LLSTLGV D
Sbjct: 566 FKGVVAVDPT-SSKKLSLRGSMSKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPD 624
Query: 1001 NVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMML 822
+ FE Q + + +++ L D KA E L+ M GEN NIL +ML+CGY P +EP+L MML
Sbjct: 625 HAFEEKQREVVDQLNAILTDPLKAQEALELMSPGENTNILKEMLLCGYEPDAEPFLSMML 684
Query: 821 EEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHPSEKKKCYDDKYQG 642
+ FRASKLLEL+ ++RIFV+NGR++MGCLDETRTL YG+VF+Q++ +++
Sbjct: 685 QTFRASKLLELRTKSRIFVANGRSMMGCLDETRTLDYGQVFVQVSGSRSEQR-------- 736
Query: 641 YLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGTRPHPNECSGSDLDG 462
V+GKVVVAKNPCLHPGD+R+L AV P L HMVDC+VFPQ+G+RPHPNECSGSDLDG
Sbjct: 737 -FIVQGKVVVAKNPCLHPGDVRVLTAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDG 795
Query: 461 DIYFVSWDHILIPPQDYQPMDYFSRPPKELDHEVTMKEIQEHFVNHMVNDTLGIIANGHL 282
DIYFV WD LIP + PMDY P K L+HEVT++E++E+F N++VND+LGIIAN H
Sbjct: 796 DIYFVCWDPELIPSKQIPPMDYSPAPTKPLEHEVTIEEVEEYFTNYIVNDSLGIIANAHT 855
Query: 281 IFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFPKEYPDFMEKDDKNTYIS 102
+FAD+EP A SS+C LA+L SIAVDFPKTG+PAE+P+EL KEYPDFMEK DK TY S
Sbjct: 856 VFADREPRKAMSSECKWLAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPTYQS 915
Query: 101 DRILGKLYRSVKGVATLDNNIR 36
++GKL+R VK +A + IR
Sbjct: 916 YNVIGKLFREVKDLAPNECFIR 937
>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
Length = 1109
Score = 818 bits (2112), Expect = 0.0
Identities = 434/863 (50%), Positives = 574/863 (66%), Gaps = 7/863 (0%)
Frame = -1
Query: 2603 LKNMLKCTLHMCCPIAEYAFCVLHSTTEVLVDLETNSRKICMYLQDNSGEYKLELSYTDT 2424
L +M + TLH ++ FCVL V V RK +L S EYKLELS +
Sbjct: 93 LHSMDRITLHFGYQMSNERFCVLWKAINVSVKFGFGLRKFYFFLSHGSEEYKLELSCENI 152
Query: 2423 WYVIGGQLKDSENKIALLRLRHAPRVYYRIYGYTNSKLKQRRENVCEWVRTTDYTASGSI 2244
W + + + K L++L AP++Y + S K+ ++ +WVR D+T S SI
Sbjct: 153 WQIQLREPRGQNTKFLLIQLLDAPQIYEKDVSAL-SYFKETPDD--QWVREIDFTPSCSI 209
Query: 2243 AKSSFFGWEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTPNTKNLAILNPPEGCDVP 2064
+SS E+ E F Y+++++ LE F+ N + I+ PP+G ++P
Sbjct: 210 GQSSALCLELPHGSQLPNFCENFARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLP 269
Query: 2063 FSVIFKLNALLQCGTISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLECNAENIVHKPFDW 1884
F ++FK+N L+Q G +S PTLD FF ++ QR +++ ++ A KL E ++P W
Sbjct: 270 FKILFKINTLVQNGCLSGPTLDTNFFRWVDPQRINISFIEHALEKLYY-LEECCYEPVRW 328
Query: 1883 LGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSNRVLRHFAEHI 1704
L E+ + S + + L GL Y+ +V +TP ++YFC PE+ VSNRVLR++ E I
Sbjct: 329 LHEQYRTYI-SKQVAGSPAISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDI 387
Query: 1703 ENFLRVSFVDENRACLRSSDLSWNTGNRSTKKCTDIYQRILDVLQEGIVIGNKKFEFLAY 1524
+NFLRVSF+DEN + S+ +S N + T +Y+RIL +LQ GIVIG+KKF+FLA
Sbjct: 388 DNFLRVSFLDENSEKIHSTVISPRMSNEGRR--TGVYRRILSILQNGIVIGDKKFDFLAV 445
Query: 1523 SSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSFSSSTETYDIQKN 1344
SSSQLR++S WMFAS ++A IR MG+F I+NVAK A+R+GQSFSSS ET + K+
Sbjct: 446 SSSQLRDNSAWMFASRPGLTAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKH 505
Query: 1343 DFEFINDIELERNGKKYIFSDGIGKISVAFAEQVAKKCGFDGKIPSAFQIRYAGYKGVVA 1164
+ E I DIE R+G Y+FSDGIGKIS A +VA KCG PSAFQIRY GYKGVVA
Sbjct: 506 EIEIIPDIETHRDGTTYVFSDGIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVA 565
Query: 1163 IDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKDNVFETL 984
+DPT +S KLSLR SM KY S N +LDVLSW+KYRPC+LNRQ+I LLSTLGVKD+VFE
Sbjct: 566 VDPT-SSRKLSLRKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKK 624
Query: 983 QEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMMLEEFRAS 804
Q +A+ +D+ L+D +A E L+ M GEN NIL +MLMCGY P +EP+L MML+ FRA+
Sbjct: 625 QREAVDQLDTILKDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAA 684
Query: 803 KLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHPSEKKKCYDD-------KYQ 645
KLLEL+ + RIFV NGR++MGCLDETRTL+YGEVF+QI+ ++ D +
Sbjct: 685 KLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHH 744
Query: 644 GYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGTRPHPNECSGSDLD 465
+EGKVVVAKNPCLHPGD+RIL AV P L HMVDC+VFPQ+G RPHP+ECSGSDLD
Sbjct: 745 DNFILEGKVVVAKNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLD 804
Query: 464 GDIYFVSWDHILIPPQDYQPMDYFSRPPKELDHEVTMKEIQEHFVNHMVNDTLGIIANGH 285
GDIYFV WDH LIPP+ PMDY P K LDH+V ++E++E+F N++ ND LGIIAN H
Sbjct: 805 GDIYFVCWDHDLIPPRQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAH 864
Query: 284 LIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFPKEYPDFMEKDDKNTYI 105
+FAD+E D A C LA+L SIA++FPKTG+PAE+P L KEYPDFMEK +K TY
Sbjct: 865 TVFADKEYDKALCPPCKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYE 924
Query: 104 SDRILGKLYRSVKGVATLDNNIR 36
S ++GKL+R VK VA + ++R
Sbjct: 925 SQSVIGKLFREVKDVAPHNYDVR 947
>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1115
Score = 814 bits (2102), Expect = 0.0
Identities = 444/888 (50%), Positives = 594/888 (66%), Gaps = 19/888 (2%)
Frame = -1
Query: 2609 AELKNMLKCTLHMCCPIAEYAFCVLHSTTEVLVDLETNSRKICMYLQDNSGEYKLELSYT 2430
A + +M TL+ C I+E F VL ST EV + +K +L S +YKL+LSY
Sbjct: 90 AYVDHMDGITLNFGCQISEDKFAVLGST-EVSIKFGIGLKKFFFFLSSGSADYKLQLSYE 148
Query: 2429 DTWYVIGGQLKDSENKIALLRLRHAPRVYYRIYGYTNSKLKQRRENVCEWVRTTDYTASG 2250
+ W V+ + + L++L APR+Y R+ S K+ ++ +WVRTTD+T S
Sbjct: 149 NIWQVVLHRPYGQNAQFLLIQLFGAPRIYKRLENSCYSFFKETPDD--QWVRTTDFTPSW 206
Query: 2249 SIAKSSFFGWEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTPNTKNLAILN--PPEG 2076
I SS + + V+ +E+F HY + E +I L+ F + K+ + N PPEG
Sbjct: 207 -IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEG 265
Query: 2075 CDVPFSVIFKLNALLQCGTISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLECNAENIVHK 1896
+P+ ++FK+++L+Q G I P L+ FF + QR +VA +++A KL E +
Sbjct: 266 IAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRNVACIEQALEKLYYLKE-CCYD 324
Query: 1895 PFDWLGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSNRVLRHF 1716
P WL E+ + + L GL Y+ +V VTP ++YFC PE+ VSNRVLR++
Sbjct: 325 PVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNY 384
Query: 1715 AEHIENFLRVSFVDENRACLRSSDL--SWNTGNRSTKKCTDIYQRILDVLQEGIVIGNKK 1542
+E I+NFLRVSFVDE L S++L +TGN T+IY+RIL L++G VIG+KK
Sbjct: 385 SEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIR---TNIYERILSTLRKGFVIGDKK 441
Query: 1541 FEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSFSSSTET 1362
FEFLA+SSSQLR++S+WMFAS ++ + IR WMG+F IKNVAK A+R+GQSF SS ET
Sbjct: 442 FEFLAFSSSQLRDNSVWMFASRRGLTTNDIRSWMGDFSQIKNVAKYAARLGQSFGSSRET 501
Query: 1361 YDIQKNDFEFINDIELERNGKKYIFSDGIGKISVAFAEQVAKKCGFDGKIPSAFQIRYAG 1182
+ +++ E I D+++ +G Y+FSDGIGKIS FA +VA KCG PSAFQIRY G
Sbjct: 502 LSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQ-YTPSAFQIRYGG 558
Query: 1181 YKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKD 1002
YKGVVA+DP +S KLSLR SM KY S NN LDVL W+KY+PCYLNRQ++ LLSTLGVKD
Sbjct: 559 YKGVVAVDP-YSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKD 617
Query: 1001 NVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMML 822
+V E Q++A+ +D+ L D KA E L+ M GEN NIL ML CGY P +EP+L MML
Sbjct: 618 DVLEQKQKEAVHQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMML 677
Query: 821 EEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQIT-----------HPSE 675
+ FRASKLL+L+ R+RIF+ NGRA+MGCLDE+RTL+YG+VF+Q T HP
Sbjct: 678 QTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFN 737
Query: 674 KKKCYDDKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGTRPH 495
+ + + ++G VVVAKNPCLHPGDIR+L AV P L HMVDC+VFPQ+G RPH
Sbjct: 738 NSRSTNCNF----ILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPH 793
Query: 494 PNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSRPPKELDHEVTMKEIQEHFVNHMVN 315
PNECSGSDLDGDIYFV WD +IPP+ Q M+Y P +LDH VT++E++E+F N++VN
Sbjct: 794 PNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHNVTIEEVEEYFTNYIVN 853
Query: 314 DTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFPKEYPDF 135
D+LGIIAN H++FAD+EPDMA S C +LAEL SIAVDFPKTG+PAE+P +L PKEYPDF
Sbjct: 854 DSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDF 913
Query: 134 MEK-DDKNTYISDRILGKLYRSVKGVATLDNNIRL---DNKKDIYDTE 3
M+K DK TYIS+R++GKL+R VK A ++I + D + YD +
Sbjct: 914 MDKPPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRDVARRSYDAD 961
>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
Length = 1133
Score = 813 bits (2100), Expect = 0.0
Identities = 438/869 (50%), Positives = 579/869 (66%), Gaps = 18/869 (2%)
Frame = -1
Query: 2609 AELKNMLKCTLHMCCPIAEYAFCVLHSTTEVLVDLETNSRKICMYLQDNSGEYKLELSYT 2430
A L ++ TLH C I++ F L V VD R++ YL EY+L+L Y
Sbjct: 92 ATLYSLQNVTLHFGCQISKEKFSFLWRVGNVSVDFGLGLRRLNFYLTYGPVEYRLQLLYE 151
Query: 2429 DTWYVIGGQLKDSENKIALLRLRHAPRVYYRIYGYTNSKLKQRRENVC------EWVRTT 2268
+ W + + + K L++L APRVY + + L+ N +WVR T
Sbjct: 152 NVWQIELHRPRGQTAKYLLIQLLGAPRVYEKEVRISFDILENPLFNYFKDTPDDQWVRAT 211
Query: 2267 DYTASGSIAKSSFFGWEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTPNTKNLAILN 2088
D+T S I SS E+ V+ L+E FV+Y++SE+ LE F+ N + I+
Sbjct: 212 DFTESCCIGHSSALYLELPYGVDLPDLRENFVYYKESEERFILESGSSFSRNLDLVPIVG 271
Query: 2087 PPEGCDVPFSVIFKLNALLQCGTISWPTLDNKFFDFLHSQR-NSVAKLKKAFTKLECNAE 1911
PP G ++PF +FK+N LLQ G +S PTLD F+ + QR +V + A KL N +
Sbjct: 272 PPSGINLPFETVFKINMLLQNGCLSGPTLDVDFYRLVDPQRIRNVDCINYALEKL-FNLK 330
Query: 1910 NIVHKPFDWLGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSNR 1731
++P WL E+ + + L GL Y+ +V VTPS++YFC PEI VSNR
Sbjct: 331 ECPYEPAAWLNEQYRKYLTAPRPPKPPAIALDSGLVYVRRVQVTPSKVYFCGPEINVSNR 390
Query: 1730 VLRHFAEHIENFLRVSFVDENRACLRSSDLSWNTGNRSTKKCTDIYQRILDVLQEGIVIG 1551
VLR + ++I+ FLRVSFVDE L S+DLS T N + + T IY+RIL VL+ GI IG
Sbjct: 391 VLREYIDYIDYFLRVSFVDEELEKLFSTDLSPRTSNANEDRRTGIYRRILSVLRNGIEIG 450
Query: 1550 NKKFEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSFSSS 1371
++KFEFLA+SSSQLR++SLWMFA+ SAD+IR+W+G+F +I+NVAK A+R+GQSF SS
Sbjct: 451 DRKFEFLAFSSSQLRDNSLWMFAAVDGHSADTIRQWIGDFRSIRNVAKYAARLGQSFGSS 510
Query: 1370 TETYDIQKNDFEFINDIELERNGKKYIFSDGIGKISVAFAEQVAKKCGFDGKIPSAFQIR 1191
TET + +++ E I+DIE+ER KY+FSDGIGKIS FA++VAKKCG +PSAFQIR
Sbjct: 511 TETLTVDESETEVISDIEIERGAVKYVFSDGIGKISSTFAKRVAKKCGLKDCVPSAFQIR 570
Query: 1190 YAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLG 1011
Y GYKGVVA+DPT +S KLSLR SM KY S + LDVL+++K + CYLNRQ+I LLSTLG
Sbjct: 571 YCGYKGVVAVDPT-SSTKLSLRKSMWKYESELHKLDVLAYSKLQHCYLNRQLITLLSTLG 629
Query: 1010 VKDNVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLR 831
V D VFE Q +A+ +++ L D +A E L M +GE NIL ++L CGY P +EP+L
Sbjct: 630 VGDRVFEKKQREAVQQLNAILNDPLRAREALDLMSAGETTNILKELLSCGYQPNAEPFLS 689
Query: 830 MMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQ---ITHPSEKKKCY 660
MML+ FRASKL EL+ + RI + +GRA+MGCLDE RTL+YGEVF+Q ITH + +
Sbjct: 690 MMLQAFRASKLQELRTKTRISIPDGRAMMGCLDEMRTLEYGEVFVQFSGITH----RPFF 745
Query: 659 DDKY--------QGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGT 504
+D + Q Y+ V G+VVVAKNPCLHPGD+R+L AV P L HMVDC+VFPQ+G+
Sbjct: 746 EDSFMLGGTGSGQNYIVV-GRVVVAKNPCLHPGDVRVLRAVNVPALHHMVDCVVFPQKGS 804
Query: 503 RPHPNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSRPPKELDHEVTMKEIQEHFVNH 324
RPHPNECSGSDLDGDIYFV WD LIP + ++PMDY P LDH+V ++E+QE+F N+
Sbjct: 805 RPHPNECSGSDLDGDIYFVCWDDELIPQKQFEPMDYSPAPTTRLDHDVRIEEVQEYFTNY 864
Query: 323 MVNDTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFPKEY 144
+VND+LGIIAN H FAD+EP A S C+ LA L SIAVDFPKTG+PA +P+EL+ KEY
Sbjct: 865 IVNDSLGIIANAHTAFADKEPSKAMSPSCIELARLFSIAVDFPKTGVPAVIPQELYVKEY 924
Query: 143 PDFMEKDDKNTYISDRILGKLYRSVKGVA 57
PDFMEK +K TY S ++GKL+R VK +A
Sbjct: 925 PDFMEKLNKPTYESQNVIGKLFREVKDIA 953
>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
Length = 1115
Score = 813 bits (2099), Expect = 0.0
Identities = 441/867 (50%), Positives = 584/867 (67%), Gaps = 16/867 (1%)
Frame = -1
Query: 2609 AELKNMLKCTLHMCCPIAEYAFCVLHSTTEVLVDLETNSRKICMYLQDNSGEYKLELSYT 2430
A + +M TL+ C I++ F VL ST EV + +K +L S +YKL+LSY
Sbjct: 90 AYVDHMDGITLNFGCQISDDKFAVLGST-EVSIKFGIGLKKFFFFLSSGSADYKLQLSYE 148
Query: 2429 DTWYVIGGQLKDSENKIALLRLRHAPRVYYRIYGYTNSKLKQRRENVCEWVRTTDYTASG 2250
+ W V+ + + L++L APR+Y R+ S K+ ++ +WVRTTD+ S
Sbjct: 149 NIWQVVLHRPYGQNAQFLLIQLFGAPRIYKRLENSCYSFFKETPDD--QWVRTTDFAPSW 206
Query: 2249 SIAKSSFFGWEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTPNTKNLAILN--PPEG 2076
I SS + + V+ +E+F HY + E +I L+ F + K+ + N PPEG
Sbjct: 207 -IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEG 265
Query: 2075 CDVPFSVIFKLNALLQCGTISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLECNAENIVHK 1896
+P+ ++FK+++L+Q G I P L+ FF + QR +VA +++A KL E +
Sbjct: 266 IAIPYKILFKISSLVQHGCIPGPALNVNFFRLVDPQRRNVACIEQALEKLYYLKE-CCYD 324
Query: 1895 PFDWLGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSNRVLRHF 1716
P WL E+ + + L GL Y+ +V VTP ++YFC PE+ VSNRVLR++
Sbjct: 325 PVRWLTEQYDGYLKGRQPPKSPSINLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNY 384
Query: 1715 AEHIENFLRVSFVDENRACLRSSDL--SWNTGNRSTKKCTDIYQRILDVLQEGIVIGNKK 1542
+E I+NFLRVSFVDE L S+DL +TGN T+IY RIL LQ+G VIG+KK
Sbjct: 385 SEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIR---TNIYVRILSTLQKGFVIGDKK 441
Query: 1541 FEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSFSSSTET 1362
FEFLA+SSSQLR++S+WMFAS ++A IR WMG+F IKNVAK A+R+GQSF SS ET
Sbjct: 442 FEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWMGDFSQIKNVAKYAARLGQSFGSSKET 501
Query: 1361 YDIQKNDFEFINDIELERNGKKYIFSDGIGKISVAFAEQVAKKCGFDGKIPSAFQIRYAG 1182
+ +++ E I D+++ +G Y+FSDGIGKIS FA +VA KCG PSAFQIRY G
Sbjct: 502 LSVLRHEIEIIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQ-YTPSAFQIRYGG 558
Query: 1181 YKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKD 1002
YKGVVA+DP +S KLSLR SM KY S NN LDVL W+KY+PC+LNRQ++ LLSTLGVKD
Sbjct: 559 YKGVVAVDP-YSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCFLNRQLVTLLSTLGVKD 617
Query: 1001 NVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMML 822
+V E Q++A+ +D+ L D KA E L+ M GEN NIL ML CGY P +EP+L MML
Sbjct: 618 DVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMML 677
Query: 821 EEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQIT-----------HPSE 675
+ FRASKLL+L+ R+RIF+ NGRA+MGCLDE+RTL+YG+VF+Q T HP
Sbjct: 678 QTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGSGHREFSEDLHPFN 737
Query: 674 KKKCYDDKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGTRPH 495
+ + + ++G VVVAKNPCLHPGDIR+L AV P L HMVDC+VFPQ+G RPH
Sbjct: 738 NSRSTNCNF----ILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPH 793
Query: 494 PNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSRPPKELDHEVTMKEIQEHFVNHMVN 315
PNECSGSDLDGDIYFV WD +IPP+ Q M+Y P +LDH+VT++E++E+F N++VN
Sbjct: 794 PNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHDVTIEEVEEYFTNYIVN 853
Query: 314 DTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFPKEYPDF 135
D+LGIIAN H++FAD+EPDMA S C +LAEL SIAVDFPKTG+PAE+P +L PKEYPDF
Sbjct: 854 DSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDF 913
Query: 134 MEK-DDKNTYISDRILGKLYRSVKGVA 57
M+K DK TYIS+R++GKLYR VK A
Sbjct: 914 MDKPPDKTTYISERVIGKLYRKVKDKA 940
>gb|ESW25208.1| hypothetical protein PHAVU_003G016600g [Phaseolus vulgaris]
gi|561026569|gb|ESW25209.1| hypothetical protein
PHAVU_003G016600g [Phaseolus vulgaris]
Length = 1122
Score = 813 bits (2099), Expect = 0.0
Identities = 435/892 (48%), Positives = 597/892 (66%), Gaps = 22/892 (2%)
Frame = -1
Query: 2612 GAELKNMLKCTLHMCCPIAEYAFCVLHSTTEVLVDLETNSRKICMYLQDNSGEYKLELSY 2433
G L ++ ++ CPI++ F VL +V + + RK+ + N +Y+LELSY
Sbjct: 94 GMNLPSLEGVKVYFGCPISKEVFSVLEEMKDVSLTFGSGKRKVQLMFSHNLVQYRLELSY 153
Query: 2432 TDTWYVIGGQLKDSENKIA---LLRLRHAPRVYYR-IYGYTNSKLKQRRENVC------- 2286
+ W V +L N+ A L++L APR++ + Y+ +N
Sbjct: 154 ENIWKV---ELIRPRNRTACYLLVQLLGAPRIFENGVQTYSEDVFVSIFDNPLYNFFKDV 210
Query: 2285 ---EWVRTTDYTASGSIAKSSFFGWEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTP 2115
+W RT D+T I +SS E S+ N K F +Y +SE+ L+ F+
Sbjct: 211 PEDQWTRTIDFTKDSCIGQSSAICLEFSREQNLPNFKNIFAYYEQSERQYTLQIGIPFSQ 270
Query: 2114 NTKNLAILNPPEGCDVPFSVIFKLNALLQCGTISWPTLDNKFFDFLHSQRNSVAKLKKAF 1935
N NL + P+G ++P+ ++FK+N+L+Q + P L+ F+ + +R + ++ A
Sbjct: 271 NW-NLVPIVAPQGVEIPYDILFKVNSLVQHACLPGPALNADFYRLVDPRRMPLDFIENAL 329
Query: 1934 TKLECNAENIVHKPFDWLGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCR 1755
KL + E ++P WL + S + + L GL Y+ +V +TP ++YFC
Sbjct: 330 EKLYYSKE-FCYEPAKWLTNQYNKYLKSKHHPRSPTISLDAGLVYVRRVQITPCKVYFCG 388
Query: 1754 PEIQVSNRVLRHFAEHIENFLRVSFVDENRACLRSSDLSWNTGNRSTKKCTDIYQRILDV 1575
PE+ VSNRVLRHF EH++NF+RVSFVDE + S+DLS +R+ KK T++Y+RILD+
Sbjct: 389 PEVNVSNRVLRHFHEHLDNFIRVSFVDEELDKMFSTDLS----SRAQKK-TEVYKRILDI 443
Query: 1574 LQEGIVIGNKKFEFLAYSSSQLRESSLWMFASTGI-VSADSIRKWMGNFWAIKNVAKCAS 1398
L+ GI+IG+KKFEFLA+SSSQLRE+SLWMFA TG SA IR+WMGNF I+NVAK A+
Sbjct: 444 LKNGILIGDKKFEFLAFSSSQLRENSLWMFAPTGTGCSAAFIREWMGNFSRIRNVAKYAA 503
Query: 1397 RMGQSFSSSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGKISVAFAEQVAKKCGFDG 1218
R+GQSF SSTET +++++ E I+D++ G +Y+FSDGIGKIS+ FA++VAKKCG+D
Sbjct: 504 RLGQSFGSSTETLSVRRDEIEIIHDVKRTCGGIEYVFSDGIGKISLEFAKRVAKKCGYDC 563
Query: 1217 KIPSAFQIRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQ 1038
PSAFQIRY GYKGVVA+DP + +KLSLRNSMRKY S N LDVL +K++PC+LNRQ
Sbjct: 564 T-PSAFQIRYGGYKGVVAVDPE-SPYKLSLRNSMRKYDSDNTKLDVLGRSKFQPCFLNRQ 621
Query: 1037 IIILLSTLGVKDNVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGY 858
+I LLSTLG+KD VFE Q +A+ +++ L D KA EVL M +GE N+L +ML+CGY
Sbjct: 622 LITLLSTLGIKDGVFEKKQREAVDQLNTILTDSLKAQEVLDLMSTGEITNVLKEMLICGY 681
Query: 857 CPRSEPYLRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHP- 681
P EP+L MML+ FRASKLLEL+ ++RIF+ GRA+MGCLDET TL+YG+VF+Q ++
Sbjct: 682 KPNEEPFLSMMLQVFRASKLLELRLKSRIFIPKGRAMMGCLDETSTLEYGQVFVQFSNNR 741
Query: 680 ----SEKKKCYDDKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQ 513
S+ C D + Y+ V GKVVVAKNPCLHPGD+R+L AV P L HMVDC+VFPQ
Sbjct: 742 LRDLSDDDSCSYDLPKTYMVV-GKVVVAKNPCLHPGDVRVLQAVDVPDLYHMVDCVVFPQ 800
Query: 512 QGTRPHPNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSRPPKELDHEVTMKEIQEHF 333
+GTRPHPNECSGSDLDGDIYFV WD L+P + QPMDY ELDH+VT++E++E+F
Sbjct: 801 KGTRPHPNECSGSDLDGDIYFVCWDPELVPSGEVQPMDYTPSSTIELDHDVTIEEVEEYF 860
Query: 332 VNHMVNDTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFP 153
N++VND+LGIIAN H +FAD +P A S++CL+LA+L S AVDFPKTG+PA +PREL+
Sbjct: 861 CNYIVNDSLGIIANAHTVFADNQPGKAMSAQCLQLAKLFSTAVDFPKTGVPAVIPRELYA 920
Query: 152 KEYPDFMEKDDKNTYISDRILGKLYRSVKGVATLD--NNIRLDNKKDIYDTE 3
KEYPDFMEK DK TY S ++GKL+R VK ++ D ++ + + YDTE
Sbjct: 921 KEYPDFMEKSDKVTYKSPNVIGKLFREVKEISADDSISSFTQEVARRSYDTE 972
>gb|ESW25207.1| hypothetical protein PHAVU_003G016600g [Phaseolus vulgaris]
Length = 1145
Score = 813 bits (2099), Expect = 0.0
Identities = 435/892 (48%), Positives = 597/892 (66%), Gaps = 22/892 (2%)
Frame = -1
Query: 2612 GAELKNMLKCTLHMCCPIAEYAFCVLHSTTEVLVDLETNSRKICMYLQDNSGEYKLELSY 2433
G L ++ ++ CPI++ F VL +V + + RK+ + N +Y+LELSY
Sbjct: 117 GMNLPSLEGVKVYFGCPISKEVFSVLEEMKDVSLTFGSGKRKVQLMFSHNLVQYRLELSY 176
Query: 2432 TDTWYVIGGQLKDSENKIA---LLRLRHAPRVYYR-IYGYTNSKLKQRRENVC------- 2286
+ W V +L N+ A L++L APR++ + Y+ +N
Sbjct: 177 ENIWKV---ELIRPRNRTACYLLVQLLGAPRIFENGVQTYSEDVFVSIFDNPLYNFFKDV 233
Query: 2285 ---EWVRTTDYTASGSIAKSSFFGWEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTP 2115
+W RT D+T I +SS E S+ N K F +Y +SE+ L+ F+
Sbjct: 234 PEDQWTRTIDFTKDSCIGQSSAICLEFSREQNLPNFKNIFAYYEQSERQYTLQIGIPFSQ 293
Query: 2114 NTKNLAILNPPEGCDVPFSVIFKLNALLQCGTISWPTLDNKFFDFLHSQRNSVAKLKKAF 1935
N NL + P+G ++P+ ++FK+N+L+Q + P L+ F+ + +R + ++ A
Sbjct: 294 NW-NLVPIVAPQGVEIPYDILFKVNSLVQHACLPGPALNADFYRLVDPRRMPLDFIENAL 352
Query: 1934 TKLECNAENIVHKPFDWLGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCR 1755
KL + E ++P WL + S + + L GL Y+ +V +TP ++YFC
Sbjct: 353 EKLYYSKE-FCYEPAKWLTNQYNKYLKSKHHPRSPTISLDAGLVYVRRVQITPCKVYFCG 411
Query: 1754 PEIQVSNRVLRHFAEHIENFLRVSFVDENRACLRSSDLSWNTGNRSTKKCTDIYQRILDV 1575
PE+ VSNRVLRHF EH++NF+RVSFVDE + S+DLS +R+ KK T++Y+RILD+
Sbjct: 412 PEVNVSNRVLRHFHEHLDNFIRVSFVDEELDKMFSTDLS----SRAQKK-TEVYKRILDI 466
Query: 1574 LQEGIVIGNKKFEFLAYSSSQLRESSLWMFASTGI-VSADSIRKWMGNFWAIKNVAKCAS 1398
L+ GI+IG+KKFEFLA+SSSQLRE+SLWMFA TG SA IR+WMGNF I+NVAK A+
Sbjct: 467 LKNGILIGDKKFEFLAFSSSQLRENSLWMFAPTGTGCSAAFIREWMGNFSRIRNVAKYAA 526
Query: 1397 RMGQSFSSSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGKISVAFAEQVAKKCGFDG 1218
R+GQSF SSTET +++++ E I+D++ G +Y+FSDGIGKIS+ FA++VAKKCG+D
Sbjct: 527 RLGQSFGSSTETLSVRRDEIEIIHDVKRTCGGIEYVFSDGIGKISLEFAKRVAKKCGYDC 586
Query: 1217 KIPSAFQIRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQ 1038
PSAFQIRY GYKGVVA+DP + +KLSLRNSMRKY S N LDVL +K++PC+LNRQ
Sbjct: 587 T-PSAFQIRYGGYKGVVAVDPE-SPYKLSLRNSMRKYDSDNTKLDVLGRSKFQPCFLNRQ 644
Query: 1037 IIILLSTLGVKDNVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGY 858
+I LLSTLG+KD VFE Q +A+ +++ L D KA EVL M +GE N+L +ML+CGY
Sbjct: 645 LITLLSTLGIKDGVFEKKQREAVDQLNTILTDSLKAQEVLDLMSTGEITNVLKEMLICGY 704
Query: 857 CPRSEPYLRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHP- 681
P EP+L MML+ FRASKLLEL+ ++RIF+ GRA+MGCLDET TL+YG+VF+Q ++
Sbjct: 705 KPNEEPFLSMMLQVFRASKLLELRLKSRIFIPKGRAMMGCLDETSTLEYGQVFVQFSNNR 764
Query: 680 ----SEKKKCYDDKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQ 513
S+ C D + Y+ V GKVVVAKNPCLHPGD+R+L AV P L HMVDC+VFPQ
Sbjct: 765 LRDLSDDDSCSYDLPKTYMVV-GKVVVAKNPCLHPGDVRVLQAVDVPDLYHMVDCVVFPQ 823
Query: 512 QGTRPHPNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSRPPKELDHEVTMKEIQEHF 333
+GTRPHPNECSGSDLDGDIYFV WD L+P + QPMDY ELDH+VT++E++E+F
Sbjct: 824 KGTRPHPNECSGSDLDGDIYFVCWDPELVPSGEVQPMDYTPSSTIELDHDVTIEEVEEYF 883
Query: 332 VNHMVNDTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFP 153
N++VND+LGIIAN H +FAD +P A S++CL+LA+L S AVDFPKTG+PA +PREL+
Sbjct: 884 CNYIVNDSLGIIANAHTVFADNQPGKAMSAQCLQLAKLFSTAVDFPKTGVPAVIPRELYA 943
Query: 152 KEYPDFMEKDDKNTYISDRILGKLYRSVKGVATLD--NNIRLDNKKDIYDTE 3
KEYPDFMEK DK TY S ++GKL+R VK ++ D ++ + + YDTE
Sbjct: 944 KEYPDFMEKSDKVTYKSPNVIGKLFREVKEISADDSISSFTQEVARRSYDTE 995
>gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1065
Score = 813 bits (2099), Expect = 0.0
Identities = 439/867 (50%), Positives = 588/867 (67%), Gaps = 16/867 (1%)
Frame = -1
Query: 2609 AELKNMLKCTLHMCCPIAEYAFCVLHSTTEVLVDLETNSRKICMYLQDNSGEYKLELSYT 2430
A + +M TL+ C I++ F VL ST EV + +KI +L S +YKL+LSY
Sbjct: 89 AYVDHMDGITLNFGCQISDDKFAVLGST-EVSIKFGIGLKKIYFFLSRGSADYKLQLSYE 147
Query: 2429 DTWYVIGGQLKDSENKIALLRLRHAPRVYYRIYGYTNSKLKQRRENVCEWVRTTDYTASG 2250
+ W V+ + + L++L APR+Y R+ S K+ ++ +WVRTTD+ S
Sbjct: 148 NIWQVVLHRPYGQNAQFLLIQLFGAPRIYKRLENSCYSFFKETPDD--QWVRTTDFAPSW 205
Query: 2249 SIAKSSFFGWEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTPNTKNLAILN--PPEG 2076
I SS + + V+ +E+F HY + E +I L+ F + K+ + N PPEG
Sbjct: 206 -IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFISQKSALVPNVQPPEG 264
Query: 2075 CDVPFSVIFKLNALLQCGTISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLECNAENIVHK 1896
+P+ ++FK+++L+Q G I P+L+ FF + QR +VA +++A KL E +
Sbjct: 265 IAIPYKILFKISSLVQHGCIPGPSLNVYFFRLVDPQRRNVACIEQALEKLYYLKE-CCYD 323
Query: 1895 PFDWLGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSNRVLRHF 1716
P WL E+ + + L GL Y+ +V VTP ++YFC PE+ VSNRVLR++
Sbjct: 324 PVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNY 383
Query: 1715 AEHIENFLRVSFVDENRACLRSSDL--SWNTGNRSTKKCTDIYQRILDVLQEGIVIGNKK 1542
+E I+NFLRVSFVDE L S++L +TGN T+IY+RIL +Q+G VIG+KK
Sbjct: 384 SEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIR---TNIYERILSTMQKGFVIGDKK 440
Query: 1541 FEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSFSSSTET 1362
FEFLA+SSSQLR++S+WMFAS ++A+ IR WMG+F IKNVAK A+R+GQSF SS ET
Sbjct: 441 FEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKET 500
Query: 1361 YDIQKNDFEFINDIELERNGKKYIFSDGIGKISVAFAEQVAKKCGFDGKIPSAFQIRYAG 1182
+ +++ E I D+++ +G Y+FSDGIGKIS FA +VA KCG PSAFQIRY G
Sbjct: 501 LSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQ-YTPSAFQIRYGG 557
Query: 1181 YKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKD 1002
YKGVVA+DP +S KLSLR SM KY S NN LDVL W+KY+PCYLNRQ+I LLSTLGVKD
Sbjct: 558 YKGVVAVDP-YSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLITLLSTLGVKD 616
Query: 1001 NVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMML 822
++ E Q++A+ +D+ L D KA E L+ M GEN NIL ML CGY P +EP+L MML
Sbjct: 617 DILEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMML 676
Query: 821 EEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQIT-----------HPSE 675
+ FRASKLL+L+ ++RIF+ NGRA+MGCLDE+RTL+YG+VF+Q T HP
Sbjct: 677 QTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFN 736
Query: 674 KKKCYDDKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGTRPH 495
+ + + ++G VVVAKNPCLHPGDIR+L AV P L HMVDC+VFPQ+G RPH
Sbjct: 737 NSRSTNCNF----ILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPH 792
Query: 494 PNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSRPPKELDHEVTMKEIQEHFVNHMVN 315
PNECSGSDLDGDIYFV WD +IPP+ QPM+Y P +LDH+VT++E++E+F N++VN
Sbjct: 793 PNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVN 852
Query: 314 DTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFPKEYPDF 135
D+LGII+N H++FAD+EPDMA S C +LAEL SIAVDFPKTG+PAE+P + PKEYPDF
Sbjct: 853 DSLGIISNAHVVFADREPDMAMSDPCKKLAELCSIAVDFPKTGVPAEIPSQWRPKEYPDF 912
Query: 134 MEK-DDKNTYISDRILGKLYRSVKGVA 57
M+K DK TYIS+R++GKLYR VK A
Sbjct: 913 MDKPPDKTTYISERVIGKLYRKVKDKA 939
>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
tuberosum]
Length = 1115
Score = 811 bits (2095), Expect = 0.0
Identities = 438/858 (51%), Positives = 581/858 (67%), Gaps = 16/858 (1%)
Frame = -1
Query: 2582 TLHMCCPIAEYAFCVLHSTTEVLVDLETNSRKICMYLQDNSGEYKLELSYTDTWYVIGGQ 2403
TL+ C I++ F VL ST EV + +K +L S +YKL+LSY + W V+ +
Sbjct: 99 TLNFGCQISDDKFAVLGST-EVSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHR 157
Query: 2402 LKDSENKIALLRLRHAPRVYYRIYGYTNSKLKQRRENVCEWVRTTDYTASGSIAKSSFFG 2223
+ L++L APR+Y R+ S K+ ++ +WVRTTD+ S I SS
Sbjct: 158 PYGQNAQFLLIQLFGAPRIYKRLENSCYSFFKETPDD--QWVRTTDFAPSW-IGLSSSLC 214
Query: 2222 WEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTPNTKNLAILN--PPEGCDVPFSVIF 2049
+ + V+ +E+F HY + E +I L+ F + K+ + N PPEG +P+ ++F
Sbjct: 215 LQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILF 274
Query: 2048 KLNALLQCGTISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLECNAENIVHKPFDWLGEKL 1869
K+++L+Q G I P L+ FF + QR +VA +++A KL E + P WL E+
Sbjct: 275 KISSLVQHGCIPGPALNVYFFRLVDPQRRNVACIEQALEKLYYLKE-CCYDPVRWLTEQY 333
Query: 1868 KAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSNRVLRHFAEHIENFLR 1689
+ + L GL Y+ +V VTP ++YFC PE+ VSNRVLR+++E I+NFLR
Sbjct: 334 DGYLKGRQPPKSPSINLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLR 393
Query: 1688 VSFVDENRACLRSSDL--SWNTGNRSTKKCTDIYQRILDVLQEGIVIGNKKFEFLAYSSS 1515
VSFVDE L S+DL +TGN T+IY+RIL L++G VIG+KKFEFLA+SSS
Sbjct: 394 VSFVDEEWEKLYSTDLLPKASTGNGIR---TNIYERILSTLRKGFVIGDKKFEFLAFSSS 450
Query: 1514 QLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSFSSSTETYDIQKNDFE 1335
QLR++S+WMFAS ++A IR WMG+F IKNVAK A+R+GQSF SSTET + +++ E
Sbjct: 451 QLRDNSVWMFASRPGLTAIDIRTWMGDFSQIKNVAKYAARLGQSFGSSTETLSVLRHEIE 510
Query: 1334 FINDIELERNGKKYIFSDGIGKISVAFAEQVAKKCGFDGKIPSAFQIRYAGYKGVVAIDP 1155
I D+++ +G Y+FSDGIGKIS FA +VA KCG PSAFQIRY GYKGVVA+DP
Sbjct: 511 VIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQ-HTPSAFQIRYGGYKGVVAVDP 567
Query: 1154 TMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKDNVFETLQEQ 975
+S KLSLR SM KY S NN LDVL W+KY+PCYLNRQ++ LLSTLGVKD+V E Q++
Sbjct: 568 -YSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKE 626
Query: 974 AITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMMLEEFRASKLL 795
A+ +D+ L D KA E L+ M GEN NIL ML CGY P +EP+L MML+ FRASKLL
Sbjct: 627 AVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLL 686
Query: 794 ELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQIT-----------HPSEKKKCYDDKY 648
+L+ ++RIF+ NGR +MGCLDE+RTL+YG+VF+Q T HP + + +
Sbjct: 687 DLRTKSRIFIPNGRLMMGCLDESRTLEYGQVFVQFTGSGHREFSEDLHPFNNSRSTNCNF 746
Query: 647 QGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGTRPHPNECSGSDL 468
++G VVVAKNPCLHPGDIR+L AV P L HMVDC+VFPQ+G RPHPNECSGSDL
Sbjct: 747 ----ILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDL 802
Query: 467 DGDIYFVSWDHILIPPQDYQPMDYFSRPPKELDHEVTMKEIQEHFVNHMVNDTLGIIANG 288
DGDIYFV WD +IPP+ Q M+Y P +LDH+VT++E++E+F N++VND+LGIIAN
Sbjct: 803 DGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANA 862
Query: 287 HLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFPKEYPDFMEK-DDKNT 111
H++FAD+EPDMA S C +LAEL SIAVDFPKTG+PAE+P +L PKEYPDFM+K DK T
Sbjct: 863 HVVFADREPDMAMSDPCKKLAELCSIAVDFPKTGVPAEIPPQLRPKEYPDFMDKPPDKTT 922
Query: 110 YISDRILGKLYRSVKGVA 57
YIS+R++GKLYR VK A
Sbjct: 923 YISERVIGKLYRKVKDKA 940
>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
[Nicotiana glutinosa]
Length = 1117
Score = 809 bits (2089), Expect = 0.0
Identities = 438/881 (49%), Positives = 588/881 (66%), Gaps = 16/881 (1%)
Frame = -1
Query: 2603 LKNMLKCTLHMCCPIAEYAFCVLHSTTEVLVDLETNSRKICMYLQDNSGEYKLELSYTDT 2424
+++M TL+ C I++ F VL S V + +KI +L S +YKL+LSY +
Sbjct: 92 VQHMDGVTLNFGCQISDKKFAVLGSKV-VSIKFGIGLKKIYFFLSYGSTDYKLQLSYENI 150
Query: 2423 WYVIGGQLKDSENKIALLRLRHAPRVYYRIYGYTNSKLKQRRENVCEWVRTTDYTASGSI 2244
W V+ + + + LL+L APR+Y R+ S K+ ++ +WVRTTD+T S I
Sbjct: 151 WQVVLHRPYGQKAQFLLLQLSGAPRIYKRLEDSCYSFFKETPDD--QWVRTTDFTPSW-I 207
Query: 2243 AKSSFFGWEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTPNTKNLA---ILNPPEGC 2073
SS E V E+F +Y++S + L+ F+ + K LA I++ PEG
Sbjct: 208 GLSSSLCLEFHNGVRLPNFSESFFYYKESANQVILQTGFTFSFSQKKLALVPIVHLPEGI 267
Query: 2072 DVPFSVIFKLNALLQCGTISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLECNAENIVHKP 1893
++P+ ++FK+++L+Q G L+ FF + +R ++A ++ A KL E + P
Sbjct: 268 ELPYKILFKISSLIQHGCFPGLALNFNFFQLVDPRRRNIACIEHALEKLYYLKE-CCYDP 326
Query: 1892 FDWLGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSNRVLRHFA 1713
WL E+ + + L GL Y+ +V VTP ++YFC PE+ VSNRVLR+++
Sbjct: 327 VRWLTEQYDEYLKRRQLPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYS 386
Query: 1712 EHIENFLRVSFVDENRACLRSSDL--SWNTGNRSTKKCTDIYQRILDVLQEGIVIGNKKF 1539
E I+NFLRVSFVDE + S+DL +TGN TDIY RIL L+ G VIG+KKF
Sbjct: 387 EDIDNFLRVSFVDEEWEKIHSTDLLPRASTGNGVR---TDIYLRILSTLRNGFVIGDKKF 443
Query: 1538 EFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSFSSSTETY 1359
EFLA+SSSQLR++S+WMFAS ++A+ IR WMG F I+NVAK A+R+GQSF SS ET
Sbjct: 444 EFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGGFQQIRNVAKYAARLGQSFGSSRETL 503
Query: 1358 DIQKNDFEFINDIELERNGKKYIFSDGIGKISVAFAEQVAKKCGFDGKIPSAFQIRYAGY 1179
+ +++ E I D+ +G YIFSDGIGKIS FA +VA KCG PS FQIRY GY
Sbjct: 504 SVGRHEVEVIPDVVCSLHGTNYIFSDGIGKISADFARRVAVKCGLQ-YTPSCFQIRYGGY 562
Query: 1178 KGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKDN 999
KGVVA+DP +S KLSLRNSM KY S N LDVL W+KY+PCYLNRQ++ LLSTLGVKD+
Sbjct: 563 KGVVAVDP-YSSMKLSLRNSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDD 621
Query: 998 VFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMMLE 819
VFE Q +A+ +D+ L D KA E L+ M GEN NIL +ML CGY P +EP+L MML+
Sbjct: 622 VFEQKQNEAVDQLDAILHDTLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQ 681
Query: 818 EFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHPSEKKKCYDDKYQGY 639
FRASKLL+L+ R+RIF+ NGR +MGCLDE+RTL+YG+VF+Q T +++ Y++ +
Sbjct: 682 TFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGTG-RRQFYEESHPFN 740
Query: 638 --------LTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGTRPHPNEC 483
+EG VVVAKNPCLHPGDIR+L AV P L HMVDC+VFPQ+G RPHPNEC
Sbjct: 741 DSGSTNCDFILEGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNEC 800
Query: 482 SGSDLDGDIYFVSWDHILIPPQDYQPMDYFSRPPKELDHEVTMKEIQEHFVNHMVNDTLG 303
SGSDLDGDIYFV WD L+PP+ +QPMDY P +LDH+VT++E++E+F N++VND+LG
Sbjct: 801 SGSDLDGDIYFVCWDPDLVPPRQFQPMDYTPAPSTQLDHDVTIEEVEEYFTNYIVNDSLG 860
Query: 302 IIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFPKEYPDFMEKD 123
IIAN H++FAD+EPDMA S C +LA+L SIAVDFPKTG+PAE+P +L PKEYPDFMEK
Sbjct: 861 IIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKP 920
Query: 122 DKNTYISDRILGKLYRSVKG---VATLDNNIRLDNKKDIYD 9
DK TY S++++GKL++ VK A+ N +D + YD
Sbjct: 921 DKPTYHSEKVIGKLFQKVKDKTPQASSIANFTMDVARKSYD 961
>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
Length = 1132
Score = 808 bits (2088), Expect = 0.0
Identities = 426/867 (49%), Positives = 569/867 (65%), Gaps = 14/867 (1%)
Frame = -1
Query: 2579 LHMCCPIAEYAFCVLHSTTEVLVDLETNSRKICMYLQDNSGEYKLELSYTDTWYVIGGQL 2400
LH C I+ F VL V V+ RKI L EY+LEL Y + W +
Sbjct: 104 LHFGCKISNEKFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCP 163
Query: 2399 KDSENKIALLRLRHAPRVYYRIYGYTNSKLKQRRENVC------EWVRTTDYTASGSIAK 2238
+ K L++L APR++ + + + N +WVRTTD+T S I +
Sbjct: 164 RWQMTKYLLIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQ 223
Query: 2237 SSFFGWEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTPNTKNLAILNPPEGCDVPFS 2058
S+ E+ + KE F +Y++SE LE ++ + + I+ PP+G +P+
Sbjct: 224 STGLCMELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYE 283
Query: 2057 VIFKLNALLQCGTISWPTLDNKFFDFLHSQRN--SVAKLKKAFTKLECNAENIVHKPFDW 1884
++FK+N L+Q G ++ P LD+ F+ + R S++ ++ A KL + + ++P W
Sbjct: 284 ILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLY-HLKECCYEPSRW 342
Query: 1883 LGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSNRVLRHFAEHI 1704
L ++ + S + L GL Y+++V VTPSR+YFC PEI VSNRVLRHF I
Sbjct: 343 LTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDI 402
Query: 1703 ENFLRVSFVDENRACLRSSDLSWNTGNRSTKKCTDIYQRILDVLQEGIVIGNKKFEFLAY 1524
+NFLR+SF+DE+ + S+DLS + + T IY RIL L+ GI+IG++KFEFLA+
Sbjct: 403 DNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAF 462
Query: 1523 SSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSFSSSTETYDIQKN 1344
SSSQLRESS WMFAS ++A IR+WMGNF I+NVAK A+R+GQSFSSS ET + +
Sbjct: 463 SSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMD 522
Query: 1343 DFEFINDIELERNGKKYIFSDGIGKISVAFAEQVAKKCGFDGKIPSAFQIRYAGYKGVVA 1164
+ E I D+++E KY+FSDGIGK+S FA +VA KCG PSAFQIRY GYKGVVA
Sbjct: 523 EIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVA 582
Query: 1163 IDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKDNVFETL 984
DPT +S KLSLR+SMRKY S LDVL+W+KY+PC+LNRQ+I LLSTLG+ D +FE
Sbjct: 583 ADPT-SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKK 641
Query: 983 QEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMMLEEFRAS 804
Q +A+ +D+ L D KA E L+ M GEN NIL ++L+CGY P +EP+L MML+ FRAS
Sbjct: 642 QREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRAS 701
Query: 803 KLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHPS------EKKKCYDDKYQG 642
KLLEL+ + RIF+ NGR++MGCLDETRTL YG+VF+QI+ E + +
Sbjct: 702 KLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ 761
Query: 641 YLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGTRPHPNECSGSDLDG 462
V+G VVVAKNPCLHPGD+R+L AV P L HMVDC+VFPQ+G RPHPNECSGSDLDG
Sbjct: 762 RFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDG 821
Query: 461 DIYFVSWDHILIPPQDYQPMDYFSRPPKELDHEVTMKEIQEHFVNHMVNDTLGIIANGHL 282
DIYFV WD LIPPQ PMDY +LDH+V +++++E+F N++VND+LGIIAN H
Sbjct: 822 DIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHT 881
Query: 281 IFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFPKEYPDFMEKDDKNTYIS 102
+FAD+EP A+S CL+LAE SIAVDFPKTG+PAE+P L+ KEYPDFMEK DK TY S
Sbjct: 882 VFADREPHKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYES 941
Query: 101 DRILGKLYRSVKGVATLDNNIRLDNKK 21
++GKL+R+VK +A + IRL K+
Sbjct: 942 QNVIGKLFRAVKDIAPHTSCIRLFTKE 968
>ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Cicer
arietinum]
Length = 1126
Score = 808 bits (2086), Expect = 0.0
Identities = 432/880 (49%), Positives = 590/880 (67%), Gaps = 13/880 (1%)
Frame = -1
Query: 2603 LKNMLKCTLHMCCPIAEYAFCVLHSTTEVLVDLETNSRKICMYLQDNSGEYKLELSYTDT 2424
L+++ TL+ C I++ F +L +V VDL RK + ++ ++K +LSY +
Sbjct: 99 LESLDDVTLYFGCQISKERFSILWRKRDVSVDLSAGMRKWRFCMCHDNKKFKFDLSYENI 158
Query: 2423 WYVIGGQLKDSENKIALLRLRHAPRVYYRIYGYTNSKLKQRRENVC---------EWVRT 2271
W + Q K L++L APR++ +Y T++ + + +W+R
Sbjct: 159 WKIEQYQPWGKTAKYLLIQLIGAPRIF-ELYVPTSTSTNVYEDPLKNYFKESPDDQWIRA 217
Query: 2270 TDYTASGSIAKSSFFGWEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTPNTKNLAIL 2091
D+T I +SS E+ + ++E FVHY+++E LE F+ N + I+
Sbjct: 218 VDFTPFNCIGQSSAICLELPCDRDFPNIREYFVHYQENEGQYTLESGSPFSHNLDVVPIV 277
Query: 2090 NPPEGCDVPFSVIFKLNALLQCGTISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLECNAE 1911
PP+G +PF ++FK+N+L+Q G +S LDN F+ + R +V ++ A K+ + +
Sbjct: 278 APPQGIYIPFDILFKVNSLVQHGCLSGSELDNAFYCLVDPLRINVDFIEHALEKMYYS-K 336
Query: 1910 NIVHKPFDWLGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSNR 1731
+ ++P WL ++ + NSN + L GL Y+ +V +TP ++YFC PEI VSNR
Sbjct: 337 DFCYEPARWLKDQYRMYLNSNYPLQSPSISLDNGLVYVRRVQITPCKVYFCGPEINVSNR 396
Query: 1730 VLRHFAEHIENFLRVSFVDENRACLRSSDLSWNTGNRSTKKCTDIYQRILDVLQEGIVIG 1551
V+RHF EHI+NFLRVSFVDE L S+DLS S T++Y RIL +L+ GIVIG
Sbjct: 397 VVRHFHEHIDNFLRVSFVDEELDKLYSTDLS---SRISVGVRTEVYNRILSILRNGIVIG 453
Query: 1550 NKKFEFLAYSSSQLRESSLWMFASTGI-VSADSIRKWMGNFWAIKNVAKCASRMGQSFSS 1374
+KKFEFLA+SSSQLRE+SLWMFA T ++A IR WMG+F I+NVAK A+R+GQSF S
Sbjct: 454 DKKFEFLAFSSSQLRENSLWMFAPTATGLTAQFIRAWMGDFSQIRNVAKYAARLGQSFGS 513
Query: 1373 STETYDIQKNDFEFINDIELERNGKKYIFSDGIGKISVAFAEQVAKKCGFDGKIPSAFQI 1194
STET + +N+ E I D +++ + +Y+FSDGIGKIS+ FA +VAKKCG+D PSAFQI
Sbjct: 514 STETLSVNRNEIEIIPDAQVKHDTIEYVFSDGIGKISLEFARRVAKKCGYDST-PSAFQI 572
Query: 1193 RYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTL 1014
RY GYKGVVA+DPT +S KLSLR SM KY S N LDVL+ +KY+PCYLNRQ+I LLSTL
Sbjct: 573 RYGGYKGVVAVDPT-SSVKLSLRKSMYKYDSDNTKLDVLACSKYQPCYLNRQLITLLSTL 631
Query: 1013 GVKDNVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYL 834
V+D+VFE Q++A+ +++ L + KA EVL M +GE NIL +ML CGY P EP+L
Sbjct: 632 KVEDSVFEKKQKEAVNQLNTILTNSLKAQEVLDLMSTGEITNILKEMLFCGYKPNVEPFL 691
Query: 833 RMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHPSEKKKCYDD 654
MML+ FRASKLLEL+++ RIF+ GRA+MG LDETRTL+YGEVF+Q ++ Y
Sbjct: 692 SMMLQTFRASKLLELRQKTRIFIPKGRAMMGVLDETRTLEYGEVFVQYSNNRISSLSYGS 751
Query: 653 KYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGTRPHPNECSGS 474
L V GKVVVAKNPCLHPGD+R+L AV P L HMVDC+VFPQ+G RPHPNECSGS
Sbjct: 752 ANS--LVVTGKVVVAKNPCLHPGDVRVLKAVDVPALHHMVDCVVFPQKGHRPHPNECSGS 809
Query: 473 DLDGDIYFVSWDHILIPPQDYQPMDYFSRPPKELDHEVTMKEIQEHFVNHMVNDTLGIIA 294
DLDGDIYFV WD LIPP+ +PM+Y S P L H+V ++E++E+F N+++ND+LGIIA
Sbjct: 810 DLDGDIYFVCWDPELIPPETTEPMEYASVQPIVLYHDVEIEEVEEYFTNYILNDSLGIIA 869
Query: 293 NGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFPKEYPDFMEKDDKN 114
N H++FAD+EP AK+ C+ LA+L SIAVDFPKTGIPA +P LF KEYPDFMEK DK
Sbjct: 870 NAHIVFADKEPAKAKAEPCIELAKLFSIAVDFPKTGIPAVIPPHLFAKEYPDFMEKPDKT 929
Query: 113 TYISDRILGKLYRSVKGVATLDNNI---RLDNKKDIYDTE 3
TY S+ ++GKL+R ++G+ + D +I L+ K YD +
Sbjct: 930 TYKSNNVIGKLFREIQGIPSRDGSITSFTLEVAKKSYDPD 969
>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
[Solanum lycopersicum]
Length = 1114
Score = 807 bits (2084), Expect = 0.0
Identities = 433/861 (50%), Positives = 577/861 (67%), Gaps = 13/861 (1%)
Frame = -1
Query: 2582 TLHMCCPIAEYAFCVLHSTTEVLVDLETNSRKICMYLQDNSGEYKLELSYTDTWYVIGGQ 2403
TL+ C I++ F VL ST EV + +K +L S +YKL+LSY + W V+ +
Sbjct: 99 TLNFGCQISDDKFAVLGST-EVSIQFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHR 157
Query: 2402 LKDSENKIALLRLRHAPRVYYRIYGYTNSKLKQRRENVCEWVRTTDYTASGSIAKSSFFG 2223
+ L++L APR+Y R+ S K+ ++ +WVRTTD+ S I SS
Sbjct: 158 PYGQNAQFLLIQLFGAPRIYKRLENSCYSFFKETPDD--QWVRTTDFPPSW-IGLSSSLC 214
Query: 2222 WEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTPNTKNLAILN--PPEGCDVPFSVIF 2049
+ + V +E+F HY + E +I L+ F + K+ + N PPEG +P+ ++F
Sbjct: 215 LQFRRGVRLPNFEESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGISIPYKILF 274
Query: 2048 KLNALLQCGTISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLECNAENIVHKPFDWLGEKL 1869
K+++L+Q G I P L+ FF + +R +VA ++ A KL E + P WL E+
Sbjct: 275 KISSLVQHGCIPGPALNVYFFRLVDPRRRNVACIEHALEKLYYIKE-CCYDPVRWLTEQY 333
Query: 1868 KAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSNRVLRHFAEHIENFLR 1689
+ + L GL Y+ +V VTP ++YFC PE+ VSNRVLR+++E I+NFLR
Sbjct: 334 DGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLR 393
Query: 1688 VSFVDENRACLRSSDLSWNTGNRSTKKCTDIYQRILDVLQEGIVIGNKKFEFLAYSSSQL 1509
VSFVDE L S+DL S + T+IY+RIL L++G VIG+KKFEFLA+SSSQL
Sbjct: 394 VSFVDEEWEKLYSTDLLPKASTGSGVR-TNIYERILSTLRKGFVIGDKKFEFLAFSSSQL 452
Query: 1508 RESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSFSSSTETYDIQKNDFEFI 1329
R++S+WMFAS ++A+ IR WMG+F IKNVAK A+R+GQSF SS ET + +++ E I
Sbjct: 453 RDNSVWMFASRPGLTANDIRAWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVI 512
Query: 1328 NDIELERNGKKYIFSDGIGKISVAFAEQVAKKCGFDGKIPSAFQIRYAGYKGVVAIDPTM 1149
D+++ +G Y+FSDGIGKIS FA +VA KCG PSAFQIRY GYKGVV +DP
Sbjct: 513 PDVKV--HGTSYVFSDGIGKISGDFAHRVASKCGLQ-YTPSAFQIRYGGYKGVVGVDPD- 568
Query: 1148 TSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKDNVFETLQEQAI 969
+S KLSLR SM KY S N LDVL W+KY+PCYLNRQ+I LLSTLGVKD V E Q++A+
Sbjct: 569 SSMKLSLRKSMSKYESDNIKLDVLGWSKYQPCYLNRQLITLLSTLGVKDEVLEQKQKEAV 628
Query: 968 TSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMMLEEFRASKLLEL 789
+D+ L D KA E L+ M GEN NIL ML CGY P +EP+L MML+ FRASKLL+L
Sbjct: 629 DQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYKPDAEPFLSMMLQTFRASKLLDL 688
Query: 788 KKRARIFVSNGRALMGCLDETRTLKYGEVFIQIT-----------HPSEKKKCYDDKYQG 642
+ R+RIF+ NGR +MGCLDE+RTL+YG+VF+Q T HP + + +
Sbjct: 689 RTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGAGHGEFSDDLHPFNNSRSTNSNF-- 746
Query: 641 YLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGTRPHPNECSGSDLDG 462
++G VVVAKNPCLHPGDIR+L AV L HMVDC+VFPQ+G RPHPNECSGSDLDG
Sbjct: 747 --ILKGNVVVAKNPCLHPGDIRVLKAVNVRALHHMVDCVVFPQKGKRPHPNECSGSDLDG 804
Query: 461 DIYFVSWDHILIPPQDYQPMDYFSRPPKELDHEVTMKEIQEHFVNHMVNDTLGIIANGHL 282
DIYFV WD +IPP+ QPM+Y P +LDH+VT++E++E+F N++VND+LGIIAN H+
Sbjct: 805 DIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHV 864
Query: 281 IFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFPKEYPDFMEKDDKNTYIS 102
+FAD+EPDMA S C +LAEL SIAVDFPKTG+PAE+P +L PKEYPDFM+K DK +YIS
Sbjct: 865 VFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPDKTSYIS 924
Query: 101 DRILGKLYRSVKGVATLDNNI 39
+R++GKL+R VK A ++I
Sbjct: 925 ERVIGKLFRKVKDKAPQASSI 945
>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 806 bits (2082), Expect = 0.0
Identities = 429/862 (49%), Positives = 566/862 (65%), Gaps = 6/862 (0%)
Frame = -1
Query: 2603 LKNMLKCTLHMCCPIAEYAFCVLHSTTEVLVDLETNSRKICMYLQDNSGEYKLELSYTDT 2424
L M + T++ C ++E F VL V ++ T RK+ L S +YKLEL Y +
Sbjct: 93 LHTMERVTVNFGCQVSEEKFYVLWKADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENI 152
Query: 2423 WYVIGGQLKDSENKIALLRLRHAPRVYYRIYGYTNSKLKQRRENVC------EWVRTTDY 2262
W + +K L++L APR+Y + + N +WVRTTD+
Sbjct: 153 WQIELRCPHSQTSKHLLIQLFGAPRIYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDF 212
Query: 2261 TASGSIAKSSFFGWEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTPNTKNLAILNPP 2082
T S I +SS E+ + +E F +Y+++E + LE ++ N + I+ P
Sbjct: 213 TRSNCIGQSSVLWLELPHNLQLPNFRENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPS 272
Query: 2081 EGCDVPFSVIFKLNALLQCGTISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLECNAENIV 1902
D+PF ++FK+N L+Q G I P LD+ F+ + R + A KL E
Sbjct: 273 RVIDLPFEILFKVNLLVQNGCIPGPALDDTFYRLVDPCRMHKVYIDHALEKLYYLRE-CC 331
Query: 1901 HKPFDWLGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSNRVLR 1722
++P WL E+ K S + + L +GL Y+ +V +TPSR+YFC PEI VSNRVLR
Sbjct: 332 YEPSRWLFEEYKNFSRSRKYQGSPTISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLR 391
Query: 1721 HFAEHIENFLRVSFVDENRACLRSSDLSWNTGNRSTKKCTDIYQRILDVLQEGIVIGNKK 1542
F I+NFLR+SFVDE + S+++ ++ + T IY+RIL L+ GIVIGNK+
Sbjct: 392 QFHNDIDNFLRISFVDEELEKIHSTNV------QARGRRTGIYKRILSTLRNGIVIGNKR 445
Query: 1541 FEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSFSSSTET 1362
FEFLA+SSSQLRE+S WMFAS ++A IR WMGNF I+NVAK A+R+GQSFSSSTET
Sbjct: 446 FEFLAFSSSQLRENSAWMFASRKGLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTET 505
Query: 1361 YDIQKNDFEFINDIELERNGKKYIFSDGIGKISVAFAEQVAKKCGFDGKIPSAFQIRYAG 1182
+ K++ I DIE+ ++G KY+FSDGIGKIS FA++VA KC G PSAFQIR G
Sbjct: 506 LSVSKDEINLIPDIEIMKDGIKYVFSDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGG 565
Query: 1181 YKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKD 1002
+KGVVAIDPT +S KLSLR SM KY S N LDVL+W+KY+PC+LNRQ+I LLSTLGV D
Sbjct: 566 FKGVVAIDPT-SSWKLSLRKSMEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPD 624
Query: 1001 NVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMML 822
FE Q + + +++ L D +A E L+ M GEN NIL +ML+CGY P +EP+L MML
Sbjct: 625 RAFEKKQREVVDQLNALLTDPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMML 684
Query: 821 EEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHPSEKKKCYDDKYQG 642
E FRASKLLEL+ +ARIFV GR++MGCLDETRTL YG+VF+Q + +++
Sbjct: 685 ETFRASKLLELRTKARIFVQKGRSMMGCLDETRTLNYGQVFVQFSGSRSERR-------- 736
Query: 641 YLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGTRPHPNECSGSDLDG 462
V+GKV+VAKNPCLHPGD+R+L AV P L HMVDC+VFPQ+GTRPHPNECSGSDLDG
Sbjct: 737 -FIVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDG 795
Query: 461 DIYFVSWDHILIPPQDYQPMDYFSRPPKELDHEVTMKEIQEHFVNHMVNDTLGIIANGHL 282
D+YFV WD LIP + PMDY +LDHEVT++EI+E+F N++VND+LGII+N H
Sbjct: 796 DVYFVCWDPELIPYKQIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHT 855
Query: 281 IFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFPKEYPDFMEKDDKNTYIS 102
FAD+EPD A S CL LA+L SIAVDFPKTG+PAE+P+EL KEYPDFMEK DK +Y S
Sbjct: 856 AFADREPDKAMSRPCLELAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQS 915
Query: 101 DRILGKLYRSVKGVATLDNNIR 36
++GKL+R VK +A + +I+
Sbjct: 916 HNVIGKLFREVKNLAPNECSIK 937
>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 801 bits (2068), Expect = 0.0
Identities = 430/876 (49%), Positives = 570/876 (65%), Gaps = 9/876 (1%)
Frame = -1
Query: 2603 LKNMLKCTLHMCCPIAEYAFCVLHSTTEVLVDLETNSRKICMYLQDNSGEYKLELSYTDT 2424
L M + T++ C ++E F VL V ++ T RK+ L S +YKLEL Y +
Sbjct: 93 LHTMERVTVNFDCHVSEEKFYVLWKADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENI 152
Query: 2423 WYVIGGQLKDSENKIALLRLRHAPRVYYRIYGYTNSKLKQRRENVC------EWVRTTDY 2262
W + +K L++L APR+Y + + N +WVRTTD+
Sbjct: 153 WQIELRCPHSQTSKHLLIQLFGAPRIYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDF 212
Query: 2261 TASGSIAKSSFFGWEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTPNTKNLAILNPP 2082
T S I +SS E+ + +E F +Y+++E + LE ++ N + I+ P
Sbjct: 213 TRSNCIGQSSVLCLELPHNLQLPNFRENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPS 272
Query: 2081 EGCDVPFSVIFKLNALLQCGTISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLECNAENIV 1902
D+PF ++FK+N L+Q G I P LD+ F+ + R + A KL E
Sbjct: 273 RVIDLPFEILFKVNLLVQNGCIPGPALDDTFYRLVDPCRMHKVYIDHALEKLYYLRE-CC 331
Query: 1901 HKPFDWLGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSNRVLR 1722
++P WL E+ K S + + L +GL Y+ +V +TPSR+YFC PEI VSNRVLR
Sbjct: 332 YEPSRWLFEEYKNFSRSRKYQGSPTISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLR 391
Query: 1721 HFAEHIENFLRVSFVDENRACLRSSDLSWNTGNRSTKKCTDIYQRILDVLQEGIVIGNKK 1542
F I+NFLR+SFVDE + S+++ ++ + T IY+RIL L+ GIVIGNK+
Sbjct: 392 QFHNDIDNFLRISFVDEELEKIHSTNV------QARGRRTGIYKRILSTLRNGIVIGNKR 445
Query: 1541 FEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSFSSSTET 1362
FEFLA+SSSQLRE+S WMFAS ++A IR WMGNF I+NVAK A+R+GQSFSSSTET
Sbjct: 446 FEFLAFSSSQLRENSAWMFASRKGLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTET 505
Query: 1361 YDIQKNDFEFINDIELERNGKKYIFSDGIGKISVAFAEQVAKKCGFDGKIPSAFQIRYAG 1182
+ K++ I DIE+ ++G KY+F DGIGKIS FA++VA KC G PSAFQIR G
Sbjct: 506 LSVSKDEINLIPDIEIMKDGIKYVFPDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGG 565
Query: 1181 YKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKD 1002
+KGVVAIDPT +S KLSLR SM KY S N LDVL+W+KY+PC+LNRQ+I LLSTLGV D
Sbjct: 566 FKGVVAIDPT-SSWKLSLRKSMEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPD 624
Query: 1001 NVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMML 822
FE Q + + +++ L D +A E L+ M GEN NIL +ML+CGY P +EP+L MML
Sbjct: 625 YAFEKKQREVVDQLNALLTDPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMML 684
Query: 821 EEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHPSEKKKCYDDKYQG 642
E FRASKLLEL+ +ARIFV GR++MGCLDETRTL YG+VF+Q + +++
Sbjct: 685 ETFRASKLLELRTKARIFVQKGRSMMGCLDETRTLNYGQVFVQFSGSRSERR-------- 736
Query: 641 YLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGTRPHPNECSGSDLDG 462
V+GKV+VAKNPCLHPGD+R+L AV P L HMVDC+VFPQ+GTRPHPNECSGSDLDG
Sbjct: 737 -FIVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDG 795
Query: 461 DIYFVSWDHILIPPQDYQPMDYFSRPPKELDHEVTMKEIQEHFVNHMVNDTLGIIANGHL 282
D+YFV WD LIP + PMDY +LDHEVT++EI+E+F N++VND+LGII+N H
Sbjct: 796 DVYFVCWDPELIPYKQIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHT 855
Query: 281 IFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFPKEYPDFMEKDDKNTYIS 102
FAD+EP A S CL LA+L SIAVDFPKTG+PAE+P+EL KE+PDFMEK DK +Y S
Sbjct: 856 AFADREPGKAMSRPCLELAKLFSIAVDFPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQS 915
Query: 101 DRILGKLYRSVKGVATLDNNIRL---DNKKDIYDTE 3
++GKL+R VK +A + +I+L + K YD +
Sbjct: 916 YNVIGKLFREVKNLAPNECSIKLLTREKMKRFYDPD 951
>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
max] gi|571439308|ref|XP_006574822.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
max] gi|571439310|ref|XP_006574823.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
max]
Length = 1125
Score = 799 bits (2063), Expect = 0.0
Identities = 428/870 (49%), Positives = 580/870 (66%), Gaps = 15/870 (1%)
Frame = -1
Query: 2567 CPIAEYAFCVLHSTTEVLVDLETNSRKICMYLQDNSGEYKLELSYTDTWYVIGGQLKDSE 2388
C I++ F VL +V+V+ + RK+ N+ +YKLELSY + W + + ++
Sbjct: 109 CQISKGRFSVLWKKQDVIVNFGSGMRKMHFLFSHNNVQYKLELSYENIWKIELHRPRNET 168
Query: 2387 NKIALLRLRHAPRVYYRIYGYTNSKLKQRRENVC------EWVRTTDYTASGSIAKSSFF 2226
+ L++L APRV+ + + N +W+R D+T I +SS
Sbjct: 169 TRYLLIQLLGAPRVFENDVPTSTNIFDDPLFNFFKDAPDEQWIRAIDFTPESRIGQSSAI 228
Query: 2225 GWEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTPNTKNLAILNPPEGCDVPFSVIFK 2046
E+ +E F +Y +SE+ L+ F+ N + I+ PP G + + ++FK
Sbjct: 229 CLELPNGRQLPNFRENFAYYEESERQYTLQTGVPFSQNWGLVPIVAPPLGVKISYDILFK 288
Query: 2045 LNALLQCGTISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLECNAENIVHKPFDWLGEKLK 1866
+N+L+Q ++ P LD F+ + +R ++ A K+ + E ++P WL ++ K
Sbjct: 289 VNSLVQHACLAGPALDGDFYRLVDPRRMPREFIEYALEKIYYSKE-FCYEPTKWLTDQYK 347
Query: 1865 AVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSNRVLRHFAEHIENFLRV 1686
S + + L GL Y+ +V +TP ++YFC PE+ VSNRVLRHF EHI+NFLRV
Sbjct: 348 TYLESKNHPRSPAISLDTGLVYVRRVQITPCKVYFCGPEMNVSNRVLRHFREHIDNFLRV 407
Query: 1685 SFVDENRACLRSSDLSWNTGNRSTKKCTDIYQRILDVLQEGIVIGNKKFEFLAYSSSQLR 1506
SFVDE L S+DLS +RS K T+IY RIL +L+ GIV+G+KKFEFLA+SSSQLR
Sbjct: 408 SFVDEELDKLFSTDLS----SRSQNKKTEIYTRILSILKNGIVVGDKKFEFLAFSSSQLR 463
Query: 1505 ESSLWMFASTGI-VSADSIRKWMGNFWAIKNVAKCASRMGQSFSSSTETYDIQKNDFEFI 1329
E+SLWMFA T +A IRKWMGNF I+NVAK A+R+GQSF SSTET + +++ E I
Sbjct: 464 ENSLWMFAPTETGCTAAYIRKWMGNFSQIRNVAKYAARLGQSFGSSTETLSVHRDEVEII 523
Query: 1328 NDIE-LERNGKKYIFSDGIGKISVAFAEQVAKKCGFDGKIPSAFQIRYAGYKGVVAIDPT 1152
D++ L +G +Y+FSDGIGKIS+ FA++VAKKCG+D PSAFQIRY GYKGVVA+DP
Sbjct: 524 PDVKKLTYDGNEYVFSDGIGKISLEFAQKVAKKCGYDCT-PSAFQIRYGGYKGVVAVDPK 582
Query: 1151 MTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKDNVFETLQEQA 972
+ +KLSLR SMRKY S N LDVL+ +K++PCYLNRQ+I LLSTLG+KD+VFE Q +
Sbjct: 583 -SCYKLSLRKSMRKYDSDNTKLDVLARSKFQPCYLNRQLISLLSTLGIKDDVFEKKQRET 641
Query: 971 ITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMMLEEFRASKLLE 792
+ +++ L D KA EVL M +GE N+L +ML+CGY P EP+L MML+ FRASKLLE
Sbjct: 642 VNQLNTILTDSLKAQEVLDLMSAGEITNVLKEMLICGYKPNEEPFLSMMLQTFRASKLLE 701
Query: 791 LKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHPSEKKKCYD----DKYQGYLTVEG 624
L+ ++RIF+ GRA+MGCLDETRTL+YG+VF+Q ++ + D D + Y+ V+G
Sbjct: 702 LRLKSRIFIPKGRAMMGCLDETRTLEYGQVFVQFSNNRLQNLSDDFFSYDLPKNYM-VKG 760
Query: 623 KVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGTRPHPNECSGSDLDGDIYFVS 444
KVVVAKNPCLHPGD+R+L AV P L HMVDC+VFPQ+G RPHPNECSGSDLDGDIYFV
Sbjct: 761 KVVVAKNPCLHPGDVRVLQAVDVPDLYHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVC 820
Query: 443 WDHILIPPQDYQPMDYFSRPPKELDHEVTMKEIQEHFVNHMVNDTLGIIANGHLIFADQE 264
WDH LIP + PMDY + ELDH+V ++E++E+F N++VND+LGIIAN H +FAD+E
Sbjct: 821 WDHELIPSRPIDPMDYTAPATVELDHDVMIEEVEEYFANYIVNDSLGIIANAHTVFADKE 880
Query: 263 PDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFPKEYPDFMEKDDKNTYISDRILGK 84
A S +C++LA L S AVDFPKTG+PA +P EL KEYPDFMEK DK TY S ++GK
Sbjct: 881 HLKAMSDQCVKLARLFSTAVDFPKTGVPAVIPPELHVKEYPDFMEKPDKPTYKSHNVIGK 940
Query: 83 LYRSVKGVATLDNNIRLDNK---KDIYDTE 3
L+R VK ++T +I K +D YD E
Sbjct: 941 LFREVKEISTSAGSITSFTKLVARDSYDHE 970
>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
family protein [Populus trichocarpa]
Length = 1133
Score = 795 bits (2052), Expect = 0.0
Identities = 428/884 (48%), Positives = 572/884 (64%), Gaps = 17/884 (1%)
Frame = -1
Query: 2603 LKNMLKCTLHMCCPIAEYAFCVLHSTTEVLVDLETNSRKICMYLQDNSGEYKLELSYTDT 2424
L M TLH ++ F + S V V+ RK+ +L N EYKL L + +
Sbjct: 94 LHTMESVTLHFGYQTSKEKFSAVWSGNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENI 153
Query: 2423 WYVIGGQLKDSENKIALLRLRHAPRVYYRIYGYTNSKLKQRRENVC------EWVRTTDY 2262
W + + + K L++L APR+Y R +++ + N +WVRTTD+
Sbjct: 154 WQIELHRPRGQTVKYLLIQLYGAPRIYERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDF 213
Query: 2261 TASGSIAKSSFFGWEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTPNTKNLAILNPP 2082
T S I SS E+ + E F +Y+++E LE F+ N + I+ P
Sbjct: 214 TPSCGIGHSSSLCLELPNHLQLPNFNENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPS 273
Query: 2081 EGCDVPFSVIFKLNALLQCGTISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLECNAENIV 1902
G ++P++++F++N L+Q G ++ LD+ F+ + R V ++ A KL + +
Sbjct: 274 SGVNLPYNILFRVNLLVQNGCLAGSMLDDIFYRLVDPNRMPVRCIEYALEKLY-HLKECC 332
Query: 1901 HKPFDWLGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSNRVLR 1722
++P W E+ K S + L GL Y+ KV +TP +++FC PE+ VSNRVLR
Sbjct: 333 YEPSKWFNEQYKKYLTSGNPPRSPVLSLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLR 392
Query: 1721 HFAEHIENFLRVSFVDENRACLRSSDLSWNTGNRSTKKCTDIYQRILDVLQEGIVIGNKK 1542
+ E I+NFLRVSFVDE + S+D+S T +R+ + T IY RIL LQ GIVIG+KK
Sbjct: 393 QYREDIDNFLRVSFVDEELEKIHSTDVSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKK 452
Query: 1541 FEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSFSSSTET 1362
FEFLA+SSSQLRE+S WMFAS ++A IR WMG+F I+NVA+ A+R+GQSF SSTET
Sbjct: 453 FEFLAFSSSQLRENSCWMFASRLGLTAADIRAWMGSFHKIRNVARYAARLGQSFGSSTET 512
Query: 1361 YDIQKNDFEFINDIELERNGKKYIFSDGIGKISVAFAEQVAKKCGFDGKIPSAFQIRYAG 1182
+ ++ E I DIE+ R G +Y+FSDGIGKIS FA +VA KCG G PSAFQIRYAG
Sbjct: 513 LSVSSHEIEIIPDIEVSRGGTRYLFSDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAG 572
Query: 1181 YKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKD 1002
YKGVVA+DPT +S KLSLR SM KY S N LDVL+ +KY+PC+LNRQ+I LLSTLGV D
Sbjct: 573 YKGVVAVDPT-SSKKLSLRRSMFKYESENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPD 631
Query: 1001 NVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMML 822
+ FE Q +A+ +D+ L D +A E L+ M GEN NIL +ML+CGY P +EP+L MML
Sbjct: 632 HHFERKQREAVDQLDAMLTDPLRAQEALELMSPGENTNILKEMLLCGYQPDAEPFLSMML 691
Query: 821 EEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHPSEKKKCYDD---- 654
+ FRASKLLEL+ + RIF+ NGR++MGCLDETRTL++G+VF++ + S + YD
Sbjct: 692 QTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLEHGQVFVKFS-GSRFRNLYDSSDMF 750
Query: 653 ----KYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGTRPHPNE 486
+ Q YL ++G VVVAKNPCLHPGD+RIL AV P L HMVDC+VFPQ+G RPHPNE
Sbjct: 751 SERGRGQCYL-IKGSVVVAKNPCLHPGDLRILKAVDVPALHHMVDCVVFPQKGPRPHPNE 809
Query: 485 CSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSRPPKELDHEVTMKEIQEHFVNHMVNDTL 306
CSGSDLDGDIYFV WD LIP Q PMDY PP +LDH+VT++E++E+F N++VND+L
Sbjct: 810 CSGSDLDGDIYFVCWDPELIPSQQISPMDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSL 869
Query: 305 GIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFPKEYPDFMEK 126
G+IAN H AD+E A S C+ LA SIAVDFPKTG+PAE+P L +EYPDFMEK
Sbjct: 870 GVIANAHTAHADKESLKAMSEPCVELARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEK 929
Query: 125 DDKNTYISDRILGKLYRSVKGVATLDNNIR---LDNKKDIYDTE 3
DK +Y S ++GKL+R VK +A ++IR D + YD +
Sbjct: 930 PDKPSYESRNVIGKLFREVKDIAPRTSSIRSFTSDVARQCYDPD 973
>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
Length = 1116
Score = 789 bits (2038), Expect = 0.0
Identities = 423/857 (49%), Positives = 571/857 (66%), Gaps = 11/857 (1%)
Frame = -1
Query: 2603 LKNMLKCTLHMCCPIAEYAFCVLHSTTEVLVDLETNSRKICMYLQDNSGEYKLELSYTDT 2424
+++M TL+ C I++ F VL S +V + +KI +L S +YKL+LSY +
Sbjct: 92 VEHMDGVTLNFGCQISDKKFAVLGSK-DVSIKFGIGLKKIYFFLSHASADYKLQLSYENI 150
Query: 2423 WYVIGGQLKDSENKIALLRLRHAPRVYYRIYGYTNSKLKQRRENVCEWVRTTDYTASGSI 2244
W V+ + + LL+L APR+Y R+ S K+ ++ +WVRTTD+T S I
Sbjct: 151 WQVVLHRPYGQNAQFLLLQLFGAPRIYKRLEDSCYSFFKETPDD--QWVRTTDFTPSW-I 207
Query: 2243 AKSSFFGWEISKLVNTTFLKETFVHYRKSEQDIALE--FCKQFTPNTKNLAILNPPEGCD 2070
SS E V E+F +Y++S L+ F F+ + I++ PEG +
Sbjct: 208 GLSSSLCLEFRNGVQLPNFSESFFYYKESMNQFILQTGFTFSFSQKLALVPIVHLPEGIE 267
Query: 2069 VPFSVIFKLNALLQCGTISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLECNAENIVHKPF 1890
+P+ ++FK+++L+Q G L+ FF + +R ++A ++ A KL E + P
Sbjct: 268 LPYKILFKISSLIQHGCFPGLALNFNFFQLVDPRRRNIACIEHALEKLYYLKE-CCYDPV 326
Query: 1889 DWLGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSNRVLRHFAE 1710
WL E+ + + L GL Y+ +V VTP ++YFC PE+ VSNRVLR+++E
Sbjct: 327 RWLTEQYDEYLKGRQLPKSPPITLDDGLVYVRRVVVTPCKVYFCGPEVNVSNRVLRNYSE 386
Query: 1709 HIENFLRVSFVDENRACLRSSDL--SWNTGNRSTKKCTDIYQRILDVLQEGIVIGNKKFE 1536
I NFLRVSFVDE + S+DL +TGN + TDIY+RIL L+ G +IG+K+FE
Sbjct: 387 DINNFLRVSFVDEEWEKIHSTDLLPRASTGNGTR---TDIYERILSTLRNGFIIGDKRFE 443
Query: 1535 FLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSFSSSTETYD 1356
FLA+SSSQLR++S+WMFAS ++A+ IR WMG+F I+NVAK A+R+GQSF SS ET
Sbjct: 444 FLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFRQIRNVAKYAARLGQSFGSSRETLS 503
Query: 1355 IQKNDFEFINDIELERNGKKYIFSDGIGKISVAFAEQVAKKCGFDGKIPSAFQIRYAGYK 1176
+ +++ E I D+ +G YIFSDGIGKIS FA +V KCG PS+FQIRY GYK
Sbjct: 504 VGRHEVEVIPDVACSLHGTNYIFSDGIGKISADFAHRVTIKCGLQ-YTPSSFQIRYGGYK 562
Query: 1175 GVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKDNV 996
GVVA+DP +S KLSLR SM KY S N LDVL W+KY+PCYLNRQ++ LLSTLGV D+V
Sbjct: 563 GVVAVDP-YSSMKLSLRKSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVIDDV 621
Query: 995 FETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMMLEE 816
E Q +A+ +D+ L D KA E L+ M GEN NIL +ML CGY P +EP+L MML+
Sbjct: 622 LEQKQNEAVDQLDAILHDSLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQT 681
Query: 815 FRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHPS-----EKKKCYDDK 651
FRASKLL+L+ R RIF+ NGR +MGCLDE+RTL+YG+VF+Q + E+ ++D
Sbjct: 682 FRASKLLDLRTRTRIFIPNGRTMMGCLDESRTLEYGQVFVQFSGAGRRQFFEESHPFNDS 741
Query: 650 YQGY--LTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGTRPHPNECSG 477
++G VVVAKNPCLHPGDIR+L AV P L HMVDC+VFPQ+G RPHPNECSG
Sbjct: 742 GSANCDFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSG 801
Query: 476 SDLDGDIYFVSWDHILIPPQDYQPMDYFSRPPKELDHEVTMKEIQEHFVNHMVNDTLGII 297
SDLDGDIYFV WD LIPP+ Q MDY P +LDH+VT++E++E+F N+++ND+LGII
Sbjct: 802 SDLDGDIYFVCWDPDLIPPRQVQSMDYTPAPTTQLDHDVTIEEVEEYFTNYIINDSLGII 861
Query: 296 ANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFPKEYPDFMEKDDK 117
AN H++FAD+EPDMA S C +LA+L SIAVDFPKTG+PAE+P +L PKEYPDFMEK DK
Sbjct: 862 ANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDK 921
Query: 116 NTYISDRILGKLYRSVK 66
TY S++++GKL++ VK
Sbjct: 922 PTYPSEKVIGKLFQKVK 938