BLASTX nr result

ID: Ephedra25_contig00002893 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00002893
         (784 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABK26380.1| unknown [Picea sitchensis]                             227   4e-57
ref|XP_002530308.1| DNA-directed RNA polymerases I, II, and III ...   217   3e-54
ref|XP_006442881.1| hypothetical protein CICLE_v10022723mg [Citr...   214   4e-53
gb|EOY13785.1| RNA polymerase Rpb8 isoform 1 [Theobroma cacao]        211   3e-52
ref|XP_003580476.1| PREDICTED: DNA-directed RNA polymerases I, I...   207   4e-51
ref|XP_006656427.1| PREDICTED: DNA-directed RNA polymerases II, ...   206   6e-51
dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa s...   206   6e-51
gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indi...   206   6e-51
ref|NP_191519.1| RNA polymerase Rpb8 [Arabidopsis thaliana] gi|2...   206   1e-50
ref|XP_006305757.1| hypothetical protein CARUB_v10010575mg [Caps...   205   1e-50
ref|XP_006402674.1| hypothetical protein EUTSA_v10006298mg [Eutr...   204   2e-50
ref|XP_006397103.1| hypothetical protein EUTSA_v10029046mg [Eutr...   204   2e-50
ref|XP_002466106.1| hypothetical protein SORBIDRAFT_01g001330 [S...   204   3e-50
ref|XP_003563485.1| PREDICTED: DNA-directed RNA polymerases I, I...   204   4e-50
ref|XP_002891800.1| ATRPABC16.5 [Arabidopsis lyrata subsp. lyrat...   203   5e-50
ref|XP_006665034.1| PREDICTED: DNA-directed RNA polymerases II, ...   203   6e-50
ref|NP_175827.1| DNA-directed RNA polymerases II and V subunit 8...   203   6e-50
ref|XP_004234478.1| PREDICTED: DNA-directed RNA polymerases I, I...   202   1e-49
ref|XP_006343291.1| PREDICTED: DNA-directed RNA polymerases II, ...   202   1e-49
ref|XP_004152137.1| PREDICTED: DNA-directed RNA polymerases I, I...   200   4e-49

>gb|ABK26380.1| unknown [Picea sitchensis]
          Length = 145

 Score =  227 bits (578), Expect = 4e-57
 Identities = 112/145 (77%), Positives = 125/145 (86%), Gaps = 1/145 (0%)
 Frame = -2

Query: 735 MAGIMFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLAL 556
           M  ++FEDIF ++RIDP+GKKFDKVSRIEARSEQFDMYMLLDVNI+VYPVSVGEKF +AL
Sbjct: 1   MVELLFEDIFTVTRIDPDGKKFDKVSRIEARSEQFDMYMLLDVNIDVYPVSVGEKFAVAL 60

Query: 555 STTLNLDGTPDTGYFIQ-GRKTLADKYEYVMNGKVYKIDESGSGVAAKVELYVSYGGLLM 379
           + TLNLDGTPD GYFIQ GRK+LADKYEYVM GK+Y + E GSG   KVE+  S+GGLLM
Sbjct: 61  APTLNLDGTPDNGYFIQGGRKSLADKYEYVMYGKLYNLSEEGSGANVKVEINASFGGLLM 120

Query: 378 LLKGDPGNLSKFELDQRLFLLMRKV 304
           LLKGDP N   FELDQRLFLLMRKV
Sbjct: 121 LLKGDPSNAGNFELDQRLFLLMRKV 145


>ref|XP_002530308.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide,
           putative [Ricinus communis] gi|223530164|gb|EEF32075.1|
           DNA-directed RNA polymerases I, II, and III 17.1 kDa
           polypeptide, putative [Ricinus communis]
          Length = 146

 Score =  217 bits (553), Expect = 3e-54
 Identities = 103/142 (72%), Positives = 125/142 (88%), Gaps = 1/142 (0%)
 Frame = -2

Query: 726 IMFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLALSTT 547
           ++FEDIFV+ ++DP+GKKFDKVSRIEA S+  DM+M LDVN E+YP++VG+KFT+AL+ T
Sbjct: 5   VLFEDIFVVDKLDPDGKKFDKVSRIEAHSQNCDMFMHLDVNTEIYPMAVGDKFTMALAHT 64

Query: 546 LNLDGTPDTGYFIQG-RKTLADKYEYVMNGKVYKIDESGSGVAAKVELYVSYGGLLMLLK 370
           LNLDGTPDTGY+ QG RKTLADKYEY+MNGK+YKI E GSG A K E+ VSYGGLLMLL+
Sbjct: 65  LNLDGTPDTGYYTQGARKTLADKYEYIMNGKLYKISEEGSGKAVKAEMLVSYGGLLMLLR 124

Query: 369 GDPGNLSKFELDQRLFLLMRKV 304
           GDP ++S FELDQRLFLLMRK+
Sbjct: 125 GDPSHVSHFELDQRLFLLMRKL 146


>ref|XP_006442881.1| hypothetical protein CICLE_v10022723mg [Citrus clementina]
           gi|568850174|ref|XP_006478800.1| PREDICTED: DNA-directed
           RNA polymerases II, IV and V subunit 8B-like [Citrus
           sinensis] gi|557545143|gb|ESR56121.1| hypothetical
           protein CICLE_v10022723mg [Citrus clementina]
          Length = 146

 Score =  214 bits (544), Expect = 4e-53
 Identities = 102/142 (71%), Positives = 124/142 (87%), Gaps = 1/142 (0%)
 Frame = -2

Query: 726 IMFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLALSTT 547
           ++FEDIFV+ +IDP+GKKFDKVSRIEA S+  DMYMLLDVN E+YP+ VG+KFT+AL+ T
Sbjct: 5   VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64

Query: 546 LNLDGTPDTGYFIQG-RKTLADKYEYVMNGKVYKIDESGSGVAAKVELYVSYGGLLMLLK 370
           LNLDGTPDTGY+  G RKTLADKYEY+M+GK++KI + GSG + K E+YVSYGGLLM+LK
Sbjct: 65  LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLK 124

Query: 369 GDPGNLSKFELDQRLFLLMRKV 304
           GDP  +S FELDQRLFLLMRK+
Sbjct: 125 GDPSYVSHFELDQRLFLLMRKL 146


>gb|EOY13785.1| RNA polymerase Rpb8 isoform 1 [Theobroma cacao]
          Length = 145

 Score =  211 bits (536), Expect = 3e-52
 Identities = 97/141 (68%), Positives = 123/141 (87%)
 Frame = -2

Query: 726 IMFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLALSTT 547
           I FEDIFV+ ++DP+GKKFDKV+RIEARS+  DM+M LDVN E+YP+ VG+KFT+AL+ T
Sbjct: 5   IFFEDIFVVDKLDPDGKKFDKVTRIEARSQNCDMFMHLDVNSEIYPMHVGDKFTMALAHT 64

Query: 546 LNLDGTPDTGYFIQGRKTLADKYEYVMNGKVYKIDESGSGVAAKVELYVSYGGLLMLLKG 367
           LNLDGTPDTGY+  GRK+LADKYEYVM+GK+YK+ + GSG   K E+YVSYGGLLM+L+G
Sbjct: 65  LNLDGTPDTGYYTPGRKSLADKYEYVMHGKLYKVSDDGSGKGLKAEIYVSYGGLLMMLRG 124

Query: 366 DPGNLSKFELDQRLFLLMRKV 304
           +  ++S+FELDQRLFLLMRK+
Sbjct: 125 EASHVSQFELDQRLFLLMRKL 145


>ref|XP_003580476.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3-like [Brachypodium distachyon]
          Length = 146

 Score =  207 bits (526), Expect = 4e-51
 Identities = 105/146 (71%), Positives = 122/146 (83%), Gaps = 2/146 (1%)
 Frame = -2

Query: 735 MAGIMFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLAL 556
           MA  +FEDIFV++RIDP+GKKFD+V+RIEARSEQF MYM LDV   VYP+  G+KFT+ L
Sbjct: 1   MAEHLFEDIFVVNRIDPDGKKFDRVNRIEARSEQFHMYMQLDVATYVYPMHAGDKFTMVL 60

Query: 555 STTLNLDGTPDTGYFIQ-GRKTLADKYEYVMNGKVYKIDE-SGSGVAAKVELYVSYGGLL 382
           + TLNLDGTPDTGY+ Q GRKTLADKY+YVM+GK+YKI E S  G AAKVE Y S+GGLL
Sbjct: 61  APTLNLDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDSSGGQAAKVETYASFGGLL 120

Query: 381 MLLKGDPGNLSKFELDQRLFLLMRKV 304
           MLLKGDP + +  ELDQRLFLLMRKV
Sbjct: 121 MLLKGDPSSAANLELDQRLFLLMRKV 146


>ref|XP_006656427.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
           8B-like isoform X1 [Oryza brachyantha]
           gi|573948243|ref|XP_006656428.1| PREDICTED: DNA-directed
           RNA polymerases II, IV and V subunit 8B-like isoform X2
           [Oryza brachyantha] gi|573948245|ref|XP_006656429.1|
           PREDICTED: DNA-directed RNA polymerases II, IV and V
           subunit 8B-like isoform X3 [Oryza brachyantha]
           gi|573948247|ref|XP_006656430.1| PREDICTED: DNA-directed
           RNA polymerases II, IV and V subunit 8B-like isoform X4
           [Oryza brachyantha] gi|573948249|ref|XP_006656431.1|
           PREDICTED: DNA-directed RNA polymerases II, IV and V
           subunit 8B-like isoform X5 [Oryza brachyantha]
          Length = 146

 Score =  206 bits (525), Expect = 6e-51
 Identities = 101/142 (71%), Positives = 121/142 (85%), Gaps = 2/142 (1%)
 Frame = -2

Query: 723 MFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLALSTTL 544
           +FEDIF ++R+DP+GKKFD+VSRIEARSEQFDMYM LDV  EVYP+  G+KFT+ L+ TL
Sbjct: 5   LFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRPGDKFTMVLAPTL 64

Query: 543 NLDGTPDTGYFIQ-GRKTLADKYEYVMNGKVYKIDESGS-GVAAKVELYVSYGGLLMLLK 370
           NLDGTPD G++ Q GRKTLADKY+YVM+GK+YKI E GS G A KVE+Y S+GGLLM+LK
Sbjct: 65  NLDGTPDIGFYTQAGRKTLADKYDYVMHGKLYKISEDGSGGQATKVEIYASFGGLLMMLK 124

Query: 369 GDPGNLSKFELDQRLFLLMRKV 304
           GDP   + FELDQRLFLL+RKV
Sbjct: 125 GDPSTAANFELDQRLFLLIRKV 146


>dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa subunit [Oryza
           sativa Japonica Group]
          Length = 396

 Score =  206 bits (525), Expect = 6e-51
 Identities = 100/142 (70%), Positives = 123/142 (86%), Gaps = 2/142 (1%)
 Frame = -2

Query: 723 MFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLALSTTL 544
           +FEDIF ++R+DP+GKKFD+VSRIEARSEQFDMYM LDV  EVYP+  G++FT+ L+ TL
Sbjct: 255 LFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMVLAPTL 314

Query: 543 NLDGTPDTGYFIQ-GRKTLADKYEYVMNGKVYKIDE-SGSGVAAKVELYVSYGGLLMLLK 370
           NLDGTPDTG++ Q GRKTLADK++YVM+GK+YKI E S SG A KVE+Y S+GGLLM+LK
Sbjct: 315 NLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGGLLMMLK 374

Query: 369 GDPGNLSKFELDQRLFLLMRKV 304
           GDP + + FELDQRLFLL+RKV
Sbjct: 375 GDPSSAASFELDQRLFLLIRKV 396


>gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indica Group]
           gi|125598367|gb|EAZ38147.1| hypothetical protein
           OsJ_22498 [Oryza sativa Japonica Group]
          Length = 191

 Score =  206 bits (525), Expect = 6e-51
 Identities = 100/142 (70%), Positives = 123/142 (86%), Gaps = 2/142 (1%)
 Frame = -2

Query: 723 MFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLALSTTL 544
           +FEDIF ++R+DP+GKKFD+VSRIEARSEQFDMYM LDV  EVYP+  G++FT+ L+ TL
Sbjct: 50  LFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMVLAPTL 109

Query: 543 NLDGTPDTGYFIQ-GRKTLADKYEYVMNGKVYKIDE-SGSGVAAKVELYVSYGGLLMLLK 370
           NLDGTPDTG++ Q GRKTLADK++YVM+GK+YKI E S SG A KVE+Y S+GGLLM+LK
Sbjct: 110 NLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGGLLMMLK 169

Query: 369 GDPGNLSKFELDQRLFLLMRKV 304
           GDP + + FELDQRLFLL+RKV
Sbjct: 170 GDPSSAASFELDQRLFLLIRKV 191


>ref|NP_191519.1| RNA polymerase Rpb8 [Arabidopsis thaliana]
           gi|297817262|ref|XP_002876514.1| hypothetical protein
           ARALYDRAFT_907465 [Arabidopsis lyrata subsp. lyrata]
           gi|565468254|ref|XP_006292007.1| hypothetical protein
           CARUB_v10018195mg [Capsella rubella]
           gi|75335784|sp|Q9M1A8.1|RPB8B_ARATH RecName:
           Full=DNA-directed RNA polymerases II, IV and V subunit
           8B; AltName: Full=RNA polymerase Rpb8
           gi|6996296|emb|CAB75457.1| putative protein [Arabidopsis
           thaliana] gi|21554131|gb|AAM63211.1| RNA polymerase II
           subunit, putative [Arabidopsis thaliana]
           gi|26453032|dbj|BAC43592.1| unknown protein [Arabidopsis
           thaliana] gi|30793811|gb|AAP40358.1| unknown protein
           [Arabidopsis thaliana] gi|297322352|gb|EFH52773.1|
           hypothetical protein ARALYDRAFT_907465 [Arabidopsis
           lyrata subsp. lyrata] gi|332646423|gb|AEE79944.1| RNA
           polymerase Rpb8 [Arabidopsis thaliana]
           gi|482560714|gb|EOA24905.1| hypothetical protein
           CARUB_v10018195mg [Capsella rubella]
          Length = 146

 Score =  206 bits (523), Expect = 1e-50
 Identities = 100/142 (70%), Positives = 122/142 (85%), Gaps = 1/142 (0%)
 Frame = -2

Query: 726 IMFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLALSTT 547
           IMFEDIFV+ ++DP+GKKFDKV+R+EARS   +M+M LDVN EVYP++VG+KFTLA++ T
Sbjct: 6   IMFEDIFVVDKLDPDGKKFDKVTRVEARSHNLEMFMHLDVNTEVYPLAVGDKFTLAMAPT 65

Query: 546 LNLDGTPDTGYFIQG-RKTLADKYEYVMNGKVYKIDESGSGVAAKVELYVSYGGLLMLLK 370
           LNLDGTPDTGYF  G +KTLADKYEY+M+GK+YKI E   G   K ELYVS+GGLLMLL+
Sbjct: 66  LNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKISER-DGKTPKAELYVSFGGLLMLLQ 124

Query: 369 GDPGNLSKFELDQRLFLLMRKV 304
           GDP ++S FELDQRLFLLMRK+
Sbjct: 125 GDPAHISHFELDQRLFLLMRKL 146


>ref|XP_006305757.1| hypothetical protein CARUB_v10010575mg [Capsella rubella]
           gi|482574468|gb|EOA38655.1| hypothetical protein
           CARUB_v10010575mg [Capsella rubella]
          Length = 146

 Score =  205 bits (522), Expect = 1e-50
 Identities = 100/142 (70%), Positives = 122/142 (85%), Gaps = 1/142 (0%)
 Frame = -2

Query: 726 IMFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLALSTT 547
           IMFEDIFV++++DP+GKKFDKV+R+EA S   +M+M LDVN EVYP++VG+KFTLA++ T
Sbjct: 6   IMFEDIFVVNKLDPDGKKFDKVTRVEATSHNLEMFMHLDVNTEVYPMAVGDKFTLAMAPT 65

Query: 546 LNLDGTPDTGYFIQG-RKTLADKYEYVMNGKVYKIDESGSGVAAKVELYVSYGGLLMLLK 370
           LNLDGTPDTGYF  G +KTLADKYEY+M+GK+YKI E   G   K ELYVS+GGLLMLLK
Sbjct: 66  LNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKISER-DGKTPKAELYVSFGGLLMLLK 124

Query: 369 GDPGNLSKFELDQRLFLLMRKV 304
           GDP ++S FELDQRLFLLMRK+
Sbjct: 125 GDPAHISHFELDQRLFLLMRKL 146


>ref|XP_006402674.1| hypothetical protein EUTSA_v10006298mg [Eutrema salsugineum]
           gi|567183404|ref|XP_006402675.1| hypothetical protein
           EUTSA_v10006298mg [Eutrema salsugineum]
           gi|557103773|gb|ESQ44127.1| hypothetical protein
           EUTSA_v10006298mg [Eutrema salsugineum]
           gi|557103774|gb|ESQ44128.1| hypothetical protein
           EUTSA_v10006298mg [Eutrema salsugineum]
          Length = 146

 Score =  204 bits (520), Expect = 2e-50
 Identities = 100/142 (70%), Positives = 122/142 (85%), Gaps = 1/142 (0%)
 Frame = -2

Query: 726 IMFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLALSTT 547
           I+FEDIFV+ ++DP+GKKFDKV+R+EARS   +M+M LDVN EVYP++VG+KFTLA++ T
Sbjct: 6   ILFEDIFVVDKLDPDGKKFDKVTRVEARSHNLEMFMHLDVNTEVYPMAVGDKFTLAMAPT 65

Query: 546 LNLDGTPDTGYFIQG-RKTLADKYEYVMNGKVYKIDESGSGVAAKVELYVSYGGLLMLLK 370
           LNLDGTPDTGYF  G +KTLADKYEYVM+GK+YKI E   G   K ELYVS+GGLLMLL+
Sbjct: 66  LNLDGTPDTGYFTPGAKKTLADKYEYVMHGKLYKITER-DGKTPKAELYVSFGGLLMLLQ 124

Query: 369 GDPGNLSKFELDQRLFLLMRKV 304
           GDP ++S FELDQRLFLLMRK+
Sbjct: 125 GDPAHISHFELDQRLFLLMRKL 146


>ref|XP_006397103.1| hypothetical protein EUTSA_v10029046mg [Eutrema salsugineum]
           gi|557098120|gb|ESQ38556.1| hypothetical protein
           EUTSA_v10029046mg [Eutrema salsugineum]
          Length = 146

 Score =  204 bits (520), Expect = 2e-50
 Identities = 99/142 (69%), Positives = 122/142 (85%), Gaps = 1/142 (0%)
 Frame = -2

Query: 726 IMFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLALSTT 547
           IMFEDIFV+ ++DP+GKKFDKV+R+EARS   +M+M LDVN EVYP++VG+KFT+A++ T
Sbjct: 6   IMFEDIFVVDKLDPDGKKFDKVTRVEARSHNLEMFMHLDVNTEVYPMAVGDKFTMAMAPT 65

Query: 546 LNLDGTPDTGYFIQG-RKTLADKYEYVMNGKVYKIDESGSGVAAKVELYVSYGGLLMLLK 370
           LNLDGTPDTGYF  G +KTLADKYEY+M+GK+YKI E   G   K ELYVS+GGLLMLL+
Sbjct: 66  LNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKITER-DGKTPKAELYVSFGGLLMLLQ 124

Query: 369 GDPGNLSKFELDQRLFLLMRKV 304
           GDP ++S FELDQRLFLLMRK+
Sbjct: 125 GDPAHISHFELDQRLFLLMRKL 146


>ref|XP_002466106.1| hypothetical protein SORBIDRAFT_01g001330 [Sorghum bicolor]
           gi|241919960|gb|EER93104.1| hypothetical protein
           SORBIDRAFT_01g001330 [Sorghum bicolor]
          Length = 145

 Score =  204 bits (519), Expect = 3e-50
 Identities = 100/145 (68%), Positives = 117/145 (80%), Gaps = 1/145 (0%)
 Frame = -2

Query: 735 MAGIMFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLAL 556
           M+  +FED F++SR+DP+GKKFDKVSR+EARSEQ  MYM LDV  +VYP+  GEKF + L
Sbjct: 1   MSEHLFEDTFIVSRLDPDGKKFDKVSRVEARSEQLGMYMQLDVATDVYPLRAGEKFNMVL 60

Query: 555 STTLNLDGTPDTGYFIQ-GRKTLADKYEYVMNGKVYKIDESGSGVAAKVELYVSYGGLLM 379
           + TLNLDGTPDTGY+ Q GRKTLAD YEYVM GK+YKI E  S   AKVE+Y S+GGLLM
Sbjct: 61  APTLNLDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKISEDTSSQNAKVEIYASFGGLLM 120

Query: 378 LLKGDPGNLSKFELDQRLFLLMRKV 304
           LL+GDP   + FELDQRLFLLMRKV
Sbjct: 121 LLRGDPSTAASFELDQRLFLLMRKV 145


>ref|XP_003563485.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3-like [Brachypodium distachyon]
          Length = 144

 Score =  204 bits (518), Expect = 4e-50
 Identities = 105/146 (71%), Positives = 123/146 (84%), Gaps = 2/146 (1%)
 Frame = -2

Query: 735 MAGIMFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLAL 556
           MA  +FEDIFV+SRIDP+GKKFD+V+RIEARSEQ  MYM LDV  +VYP+  G+KFT+ L
Sbjct: 1   MAEHLFEDIFVVSRIDPDGKKFDRVNRIEARSEQ--MYMQLDVATDVYPMHAGDKFTMVL 58

Query: 555 STTLNLDGTPDTGYFIQ-GRKTLADKYEYVMNGKVYKIDESGSG-VAAKVELYVSYGGLL 382
           + TLNLDGTPDTGY+ Q GRKTLADKY+YVM+GK+YKI E  SG  AAKVE+Y S+GGLL
Sbjct: 59  APTLNLDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDSSGGQAAKVEIYASFGGLL 118

Query: 381 MLLKGDPGNLSKFELDQRLFLLMRKV 304
           MLLKGDP + +  ELDQRLFLLMRKV
Sbjct: 119 MLLKGDPSSAANLELDQRLFLLMRKV 144


>ref|XP_002891800.1| ATRPABC16.5 [Arabidopsis lyrata subsp. lyrata]
           gi|297337642|gb|EFH68059.1| ATRPABC16.5 [Arabidopsis
           lyrata subsp. lyrata]
          Length = 146

 Score =  203 bits (517), Expect = 5e-50
 Identities = 99/142 (69%), Positives = 121/142 (85%), Gaps = 1/142 (0%)
 Frame = -2

Query: 726 IMFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLALSTT 547
           I+FEDIFV+ ++DP+GKKFDKV+R++A S   +M+M LDVN EVYP++VG+KFTLAL+ T
Sbjct: 6   ILFEDIFVVDKLDPDGKKFDKVTRVQATSHNLEMFMHLDVNTEVYPLAVGDKFTLALAPT 65

Query: 546 LNLDGTPDTGYFIQG-RKTLADKYEYVMNGKVYKIDESGSGVAAKVELYVSYGGLLMLLK 370
           LNLDGTPDTGYF  G +KTLADKYEY+M+GK+YKI E   G   K ELYVS+GGLLMLLK
Sbjct: 66  LNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKISER-DGKTPKAELYVSFGGLLMLLK 124

Query: 369 GDPGNLSKFELDQRLFLLMRKV 304
           GDP ++S FELDQRLFLLMRK+
Sbjct: 125 GDPAHISHFELDQRLFLLMRKL 146


>ref|XP_006665034.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
           8B-like [Oryza brachyantha]
          Length = 147

 Score =  203 bits (516), Expect = 6e-50
 Identities = 101/147 (68%), Positives = 123/147 (83%), Gaps = 3/147 (2%)
 Frame = -2

Query: 735 MAGIMFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLAL 556
           MA  +FEDIF ++R+DP+GKKFD+VSRIEAR+EQ ++YM LDV  +VYP+  G+KFT+ L
Sbjct: 1   MAEFLFEDIFTVTRLDPDGKKFDRVSRIEARNEQLNVYMQLDVATDVYPMHPGDKFTMVL 60

Query: 555 STTLNLDGTPDTGYFIQ-GRKTLADKYEYVMNGKVYKI--DESGSGVAAKVELYVSYGGL 385
             TLNLDGTPDTG+F Q GRKTLADKYEYVM+GK+YKI  D+  SG  AKVE+Y S+GGL
Sbjct: 61  VPTLNLDGTPDTGFFTQAGRKTLADKYEYVMHGKLYKISEDKETSGQNAKVEMYASFGGL 120

Query: 384 LMLLKGDPGNLSKFELDQRLFLLMRKV 304
           LM+LKGDP + + FELDQRLFLLMRKV
Sbjct: 121 LMMLKGDPSSAANFELDQRLFLLMRKV 147


>ref|NP_175827.1| DNA-directed RNA polymerases II and V subunit 8A [Arabidopsis
           thaliana] gi|75100070|sp|O81097.1|RPB8A_ARATH RecName:
           Full=DNA-directed RNA polymerases II and V subunit 8A;
           AltName: Full=RNA polymerase I, II and III 16.5 kDa
           subunit; Short=AtRPABC16.5
           gi|4585968|gb|AAD25604.1|AC005287_6 RNA polymerase I, II
           and III 16.5 kDa subunit [Arabidopsis thaliana]
           gi|3372230|gb|AAC28252.1| RNA polymerase I, II and III
           16.5 kDa subunit [Arabidopsis thaliana]
           gi|21555812|gb|AAM63939.1| RNA polymerase II subunit,
           putative [Arabidopsis thaliana]
           gi|28466897|gb|AAO44057.1| At1g54250 [Arabidopsis
           thaliana] gi|110735704|dbj|BAE99832.1| RNA polymerase I,
           II and III 16.5 kDa subunit [Arabidopsis thaliana]
           gi|332194950|gb|AEE33071.1| RNA polymerase Rpb8
           [Arabidopsis thaliana]
          Length = 146

 Score =  203 bits (516), Expect = 6e-50
 Identities = 99/142 (69%), Positives = 121/142 (85%), Gaps = 1/142 (0%)
 Frame = -2

Query: 726 IMFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLALSTT 547
           I+FEDIFV+ ++DP+GKKFDKV+R++A S   +M+M LDVN EVYP++VG+KFTLAL+ T
Sbjct: 6   ILFEDIFVVDQLDPDGKKFDKVTRVQATSHNLEMFMHLDVNTEVYPLAVGDKFTLALAPT 65

Query: 546 LNLDGTPDTGYFIQG-RKTLADKYEYVMNGKVYKIDESGSGVAAKVELYVSYGGLLMLLK 370
           LNLDGTPDTGYF  G +KTLADKYEY+M+GK+YKI E   G   K ELYVS+GGLLMLLK
Sbjct: 66  LNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKISER-DGKTPKAELYVSFGGLLMLLK 124

Query: 369 GDPGNLSKFELDQRLFLLMRKV 304
           GDP ++S FELDQRLFLLMRK+
Sbjct: 125 GDPAHISHFELDQRLFLLMRKL 146


>ref|XP_004234478.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3-like isoform 1 [Solanum lycopersicum]
           gi|460377396|ref|XP_004234479.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit rpabc3-like
           isoform 2 [Solanum lycopersicum]
          Length = 145

 Score =  202 bits (514), Expect = 1e-49
 Identities = 95/145 (65%), Positives = 124/145 (85%), Gaps = 1/145 (0%)
 Frame = -2

Query: 735 MAGIMFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLAL 556
           M   +FEDIF +++ DP+GKKFD+V+RIEARSEQFDM+MLLDVN E+YP+ V +KF + L
Sbjct: 1   MVETLFEDIFTVTQKDPDGKKFDRVNRIEARSEQFDMFMLLDVNTEIYPMRVKDKFMMVL 60

Query: 555 STTLNLDGTPDTGYFIQG-RKTLADKYEYVMNGKVYKIDESGSGVAAKVELYVSYGGLLM 379
           ++TLNLDGTPDTGYFIQG +K+LADK+EYVM+GK+Y+I E GSG   K +++VS+GGLLM
Sbjct: 61  ASTLNLDGTPDTGYFIQGNKKSLADKFEYVMHGKLYRISEEGSGKHVKADIFVSFGGLLM 120

Query: 378 LLKGDPGNLSKFELDQRLFLLMRKV 304
            L+GDP   +KFELDQ++FLL+RKV
Sbjct: 121 QLRGDPSIAAKFELDQKIFLLIRKV 145


>ref|XP_006343291.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
           8B-like [Solanum tuberosum]
          Length = 145

 Score =  202 bits (513), Expect = 1e-49
 Identities = 94/145 (64%), Positives = 124/145 (85%), Gaps = 1/145 (0%)
 Frame = -2

Query: 735 MAGIMFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLAL 556
           M   +FEDIF +++ DP+GKKFD+V+RIEARSEQFDM+MLLD+N E+YP+ V +KF + L
Sbjct: 1   MVETLFEDIFTVTQKDPDGKKFDRVNRIEARSEQFDMFMLLDINTEIYPMRVKDKFMMVL 60

Query: 555 STTLNLDGTPDTGYFIQG-RKTLADKYEYVMNGKVYKIDESGSGVAAKVELYVSYGGLLM 379
           ++TLNLDGTPDTGYFIQG +K+LADK+EYVM+GK+Y+I E GSG   K +++VS+GGLLM
Sbjct: 61  ASTLNLDGTPDTGYFIQGNKKSLADKFEYVMHGKLYRISEEGSGKHVKADIFVSFGGLLM 120

Query: 378 LLKGDPGNLSKFELDQRLFLLMRKV 304
            L+GDP   +KFELDQ++FLL+RKV
Sbjct: 121 QLRGDPSIAAKFELDQKIFLLIRKV 145


>ref|XP_004152137.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3-like [Cucumis sativus]
           gi|449484745|ref|XP_004156968.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit rpabc3-like
           [Cucumis sativus]
          Length = 144

 Score =  200 bits (509), Expect = 4e-49
 Identities = 97/145 (66%), Positives = 124/145 (85%), Gaps = 1/145 (0%)
 Frame = -2

Query: 735 MAGIMFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLAL 556
           M  ++F+DIF I R++P+GKKFDKV+RIEA+SE+FDM+M LD+N E+YP+  GEKF++AL
Sbjct: 1   MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYPLKEGEKFSMAL 60

Query: 555 STTLNLDGTPDTGYFIQG-RKTLADKYEYVMNGKVYKIDESGSGVAAKVELYVSYGGLLM 379
           + TLNLDGTPDTGYF+QG RK+LAD+YEYVM GK+++I ES SG   K E+  S+GGLLM
Sbjct: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISES-SGHGGKAEIDASFGGLLM 119

Query: 378 LLKGDPGNLSKFELDQRLFLLMRKV 304
           +LKGDP + SKFELDQRLFLL+RKV
Sbjct: 120 MLKGDPSHCSKFELDQRLFLLIRKV 144