BLASTX nr result
ID: Ephedra25_contig00002893
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Ephedra25_contig00002893 (784 letters) Database: ./nr 37,332,560 sequences; 13,225,080,153 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABK26380.1| unknown [Picea sitchensis] 227 4e-57 ref|XP_002530308.1| DNA-directed RNA polymerases I, II, and III ... 217 3e-54 ref|XP_006442881.1| hypothetical protein CICLE_v10022723mg [Citr... 214 4e-53 gb|EOY13785.1| RNA polymerase Rpb8 isoform 1 [Theobroma cacao] 211 3e-52 ref|XP_003580476.1| PREDICTED: DNA-directed RNA polymerases I, I... 207 4e-51 ref|XP_006656427.1| PREDICTED: DNA-directed RNA polymerases II, ... 206 6e-51 dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa s... 206 6e-51 gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indi... 206 6e-51 ref|NP_191519.1| RNA polymerase Rpb8 [Arabidopsis thaliana] gi|2... 206 1e-50 ref|XP_006305757.1| hypothetical protein CARUB_v10010575mg [Caps... 205 1e-50 ref|XP_006402674.1| hypothetical protein EUTSA_v10006298mg [Eutr... 204 2e-50 ref|XP_006397103.1| hypothetical protein EUTSA_v10029046mg [Eutr... 204 2e-50 ref|XP_002466106.1| hypothetical protein SORBIDRAFT_01g001330 [S... 204 3e-50 ref|XP_003563485.1| PREDICTED: DNA-directed RNA polymerases I, I... 204 4e-50 ref|XP_002891800.1| ATRPABC16.5 [Arabidopsis lyrata subsp. lyrat... 203 5e-50 ref|XP_006665034.1| PREDICTED: DNA-directed RNA polymerases II, ... 203 6e-50 ref|NP_175827.1| DNA-directed RNA polymerases II and V subunit 8... 203 6e-50 ref|XP_004234478.1| PREDICTED: DNA-directed RNA polymerases I, I... 202 1e-49 ref|XP_006343291.1| PREDICTED: DNA-directed RNA polymerases II, ... 202 1e-49 ref|XP_004152137.1| PREDICTED: DNA-directed RNA polymerases I, I... 200 4e-49 >gb|ABK26380.1| unknown [Picea sitchensis] Length = 145 Score = 227 bits (578), Expect = 4e-57 Identities = 112/145 (77%), Positives = 125/145 (86%), Gaps = 1/145 (0%) Frame = -2 Query: 735 MAGIMFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLAL 556 M ++FEDIF ++RIDP+GKKFDKVSRIEARSEQFDMYMLLDVNI+VYPVSVGEKF +AL Sbjct: 1 MVELLFEDIFTVTRIDPDGKKFDKVSRIEARSEQFDMYMLLDVNIDVYPVSVGEKFAVAL 60 Query: 555 STTLNLDGTPDTGYFIQ-GRKTLADKYEYVMNGKVYKIDESGSGVAAKVELYVSYGGLLM 379 + TLNLDGTPD GYFIQ GRK+LADKYEYVM GK+Y + E GSG KVE+ S+GGLLM Sbjct: 61 APTLNLDGTPDNGYFIQGGRKSLADKYEYVMYGKLYNLSEEGSGANVKVEINASFGGLLM 120 Query: 378 LLKGDPGNLSKFELDQRLFLLMRKV 304 LLKGDP N FELDQRLFLLMRKV Sbjct: 121 LLKGDPSNAGNFELDQRLFLLMRKV 145 >ref|XP_002530308.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide, putative [Ricinus communis] gi|223530164|gb|EEF32075.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide, putative [Ricinus communis] Length = 146 Score = 217 bits (553), Expect = 3e-54 Identities = 103/142 (72%), Positives = 125/142 (88%), Gaps = 1/142 (0%) Frame = -2 Query: 726 IMFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLALSTT 547 ++FEDIFV+ ++DP+GKKFDKVSRIEA S+ DM+M LDVN E+YP++VG+KFT+AL+ T Sbjct: 5 VLFEDIFVVDKLDPDGKKFDKVSRIEAHSQNCDMFMHLDVNTEIYPMAVGDKFTMALAHT 64 Query: 546 LNLDGTPDTGYFIQG-RKTLADKYEYVMNGKVYKIDESGSGVAAKVELYVSYGGLLMLLK 370 LNLDGTPDTGY+ QG RKTLADKYEY+MNGK+YKI E GSG A K E+ VSYGGLLMLL+ Sbjct: 65 LNLDGTPDTGYYTQGARKTLADKYEYIMNGKLYKISEEGSGKAVKAEMLVSYGGLLMLLR 124 Query: 369 GDPGNLSKFELDQRLFLLMRKV 304 GDP ++S FELDQRLFLLMRK+ Sbjct: 125 GDPSHVSHFELDQRLFLLMRKL 146 >ref|XP_006442881.1| hypothetical protein CICLE_v10022723mg [Citrus clementina] gi|568850174|ref|XP_006478800.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 8B-like [Citrus sinensis] gi|557545143|gb|ESR56121.1| hypothetical protein CICLE_v10022723mg [Citrus clementina] Length = 146 Score = 214 bits (544), Expect = 4e-53 Identities = 102/142 (71%), Positives = 124/142 (87%), Gaps = 1/142 (0%) Frame = -2 Query: 726 IMFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLALSTT 547 ++FEDIFV+ +IDP+GKKFDKVSRIEA S+ DMYMLLDVN E+YP+ VG+KFT+AL+ T Sbjct: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64 Query: 546 LNLDGTPDTGYFIQG-RKTLADKYEYVMNGKVYKIDESGSGVAAKVELYVSYGGLLMLLK 370 LNLDGTPDTGY+ G RKTLADKYEY+M+GK++KI + GSG + K E+YVSYGGLLM+LK Sbjct: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLK 124 Query: 369 GDPGNLSKFELDQRLFLLMRKV 304 GDP +S FELDQRLFLLMRK+ Sbjct: 125 GDPSYVSHFELDQRLFLLMRKL 146 >gb|EOY13785.1| RNA polymerase Rpb8 isoform 1 [Theobroma cacao] Length = 145 Score = 211 bits (536), Expect = 3e-52 Identities = 97/141 (68%), Positives = 123/141 (87%) Frame = -2 Query: 726 IMFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLALSTT 547 I FEDIFV+ ++DP+GKKFDKV+RIEARS+ DM+M LDVN E+YP+ VG+KFT+AL+ T Sbjct: 5 IFFEDIFVVDKLDPDGKKFDKVTRIEARSQNCDMFMHLDVNSEIYPMHVGDKFTMALAHT 64 Query: 546 LNLDGTPDTGYFIQGRKTLADKYEYVMNGKVYKIDESGSGVAAKVELYVSYGGLLMLLKG 367 LNLDGTPDTGY+ GRK+LADKYEYVM+GK+YK+ + GSG K E+YVSYGGLLM+L+G Sbjct: 65 LNLDGTPDTGYYTPGRKSLADKYEYVMHGKLYKVSDDGSGKGLKAEIYVSYGGLLMMLRG 124 Query: 366 DPGNLSKFELDQRLFLLMRKV 304 + ++S+FELDQRLFLLMRK+ Sbjct: 125 EASHVSQFELDQRLFLLMRKL 145 >ref|XP_003580476.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit rpabc3-like [Brachypodium distachyon] Length = 146 Score = 207 bits (526), Expect = 4e-51 Identities = 105/146 (71%), Positives = 122/146 (83%), Gaps = 2/146 (1%) Frame = -2 Query: 735 MAGIMFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLAL 556 MA +FEDIFV++RIDP+GKKFD+V+RIEARSEQF MYM LDV VYP+ G+KFT+ L Sbjct: 1 MAEHLFEDIFVVNRIDPDGKKFDRVNRIEARSEQFHMYMQLDVATYVYPMHAGDKFTMVL 60 Query: 555 STTLNLDGTPDTGYFIQ-GRKTLADKYEYVMNGKVYKIDE-SGSGVAAKVELYVSYGGLL 382 + TLNLDGTPDTGY+ Q GRKTLADKY+YVM+GK+YKI E S G AAKVE Y S+GGLL Sbjct: 61 APTLNLDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDSSGGQAAKVETYASFGGLL 120 Query: 381 MLLKGDPGNLSKFELDQRLFLLMRKV 304 MLLKGDP + + ELDQRLFLLMRKV Sbjct: 121 MLLKGDPSSAANLELDQRLFLLMRKV 146 >ref|XP_006656427.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 8B-like isoform X1 [Oryza brachyantha] gi|573948243|ref|XP_006656428.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 8B-like isoform X2 [Oryza brachyantha] gi|573948245|ref|XP_006656429.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 8B-like isoform X3 [Oryza brachyantha] gi|573948247|ref|XP_006656430.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 8B-like isoform X4 [Oryza brachyantha] gi|573948249|ref|XP_006656431.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 8B-like isoform X5 [Oryza brachyantha] Length = 146 Score = 206 bits (525), Expect = 6e-51 Identities = 101/142 (71%), Positives = 121/142 (85%), Gaps = 2/142 (1%) Frame = -2 Query: 723 MFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLALSTTL 544 +FEDIF ++R+DP+GKKFD+VSRIEARSEQFDMYM LDV EVYP+ G+KFT+ L+ TL Sbjct: 5 LFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRPGDKFTMVLAPTL 64 Query: 543 NLDGTPDTGYFIQ-GRKTLADKYEYVMNGKVYKIDESGS-GVAAKVELYVSYGGLLMLLK 370 NLDGTPD G++ Q GRKTLADKY+YVM+GK+YKI E GS G A KVE+Y S+GGLLM+LK Sbjct: 65 NLDGTPDIGFYTQAGRKTLADKYDYVMHGKLYKISEDGSGGQATKVEIYASFGGLLMMLK 124 Query: 369 GDPGNLSKFELDQRLFLLMRKV 304 GDP + FELDQRLFLL+RKV Sbjct: 125 GDPSTAANFELDQRLFLLIRKV 146 >dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa subunit [Oryza sativa Japonica Group] Length = 396 Score = 206 bits (525), Expect = 6e-51 Identities = 100/142 (70%), Positives = 123/142 (86%), Gaps = 2/142 (1%) Frame = -2 Query: 723 MFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLALSTTL 544 +FEDIF ++R+DP+GKKFD+VSRIEARSEQFDMYM LDV EVYP+ G++FT+ L+ TL Sbjct: 255 LFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMVLAPTL 314 Query: 543 NLDGTPDTGYFIQ-GRKTLADKYEYVMNGKVYKIDE-SGSGVAAKVELYVSYGGLLMLLK 370 NLDGTPDTG++ Q GRKTLADK++YVM+GK+YKI E S SG A KVE+Y S+GGLLM+LK Sbjct: 315 NLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGGLLMMLK 374 Query: 369 GDPGNLSKFELDQRLFLLMRKV 304 GDP + + FELDQRLFLL+RKV Sbjct: 375 GDPSSAASFELDQRLFLLIRKV 396 >gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indica Group] gi|125598367|gb|EAZ38147.1| hypothetical protein OsJ_22498 [Oryza sativa Japonica Group] Length = 191 Score = 206 bits (525), Expect = 6e-51 Identities = 100/142 (70%), Positives = 123/142 (86%), Gaps = 2/142 (1%) Frame = -2 Query: 723 MFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLALSTTL 544 +FEDIF ++R+DP+GKKFD+VSRIEARSEQFDMYM LDV EVYP+ G++FT+ L+ TL Sbjct: 50 LFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMVLAPTL 109 Query: 543 NLDGTPDTGYFIQ-GRKTLADKYEYVMNGKVYKIDE-SGSGVAAKVELYVSYGGLLMLLK 370 NLDGTPDTG++ Q GRKTLADK++YVM+GK+YKI E S SG A KVE+Y S+GGLLM+LK Sbjct: 110 NLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGGLLMMLK 169 Query: 369 GDPGNLSKFELDQRLFLLMRKV 304 GDP + + FELDQRLFLL+RKV Sbjct: 170 GDPSSAASFELDQRLFLLIRKV 191 >ref|NP_191519.1| RNA polymerase Rpb8 [Arabidopsis thaliana] gi|297817262|ref|XP_002876514.1| hypothetical protein ARALYDRAFT_907465 [Arabidopsis lyrata subsp. lyrata] gi|565468254|ref|XP_006292007.1| hypothetical protein CARUB_v10018195mg [Capsella rubella] gi|75335784|sp|Q9M1A8.1|RPB8B_ARATH RecName: Full=DNA-directed RNA polymerases II, IV and V subunit 8B; AltName: Full=RNA polymerase Rpb8 gi|6996296|emb|CAB75457.1| putative protein [Arabidopsis thaliana] gi|21554131|gb|AAM63211.1| RNA polymerase II subunit, putative [Arabidopsis thaliana] gi|26453032|dbj|BAC43592.1| unknown protein [Arabidopsis thaliana] gi|30793811|gb|AAP40358.1| unknown protein [Arabidopsis thaliana] gi|297322352|gb|EFH52773.1| hypothetical protein ARALYDRAFT_907465 [Arabidopsis lyrata subsp. lyrata] gi|332646423|gb|AEE79944.1| RNA polymerase Rpb8 [Arabidopsis thaliana] gi|482560714|gb|EOA24905.1| hypothetical protein CARUB_v10018195mg [Capsella rubella] Length = 146 Score = 206 bits (523), Expect = 1e-50 Identities = 100/142 (70%), Positives = 122/142 (85%), Gaps = 1/142 (0%) Frame = -2 Query: 726 IMFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLALSTT 547 IMFEDIFV+ ++DP+GKKFDKV+R+EARS +M+M LDVN EVYP++VG+KFTLA++ T Sbjct: 6 IMFEDIFVVDKLDPDGKKFDKVTRVEARSHNLEMFMHLDVNTEVYPLAVGDKFTLAMAPT 65 Query: 546 LNLDGTPDTGYFIQG-RKTLADKYEYVMNGKVYKIDESGSGVAAKVELYVSYGGLLMLLK 370 LNLDGTPDTGYF G +KTLADKYEY+M+GK+YKI E G K ELYVS+GGLLMLL+ Sbjct: 66 LNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKISER-DGKTPKAELYVSFGGLLMLLQ 124 Query: 369 GDPGNLSKFELDQRLFLLMRKV 304 GDP ++S FELDQRLFLLMRK+ Sbjct: 125 GDPAHISHFELDQRLFLLMRKL 146 >ref|XP_006305757.1| hypothetical protein CARUB_v10010575mg [Capsella rubella] gi|482574468|gb|EOA38655.1| hypothetical protein CARUB_v10010575mg [Capsella rubella] Length = 146 Score = 205 bits (522), Expect = 1e-50 Identities = 100/142 (70%), Positives = 122/142 (85%), Gaps = 1/142 (0%) Frame = -2 Query: 726 IMFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLALSTT 547 IMFEDIFV++++DP+GKKFDKV+R+EA S +M+M LDVN EVYP++VG+KFTLA++ T Sbjct: 6 IMFEDIFVVNKLDPDGKKFDKVTRVEATSHNLEMFMHLDVNTEVYPMAVGDKFTLAMAPT 65 Query: 546 LNLDGTPDTGYFIQG-RKTLADKYEYVMNGKVYKIDESGSGVAAKVELYVSYGGLLMLLK 370 LNLDGTPDTGYF G +KTLADKYEY+M+GK+YKI E G K ELYVS+GGLLMLLK Sbjct: 66 LNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKISER-DGKTPKAELYVSFGGLLMLLK 124 Query: 369 GDPGNLSKFELDQRLFLLMRKV 304 GDP ++S FELDQRLFLLMRK+ Sbjct: 125 GDPAHISHFELDQRLFLLMRKL 146 >ref|XP_006402674.1| hypothetical protein EUTSA_v10006298mg [Eutrema salsugineum] gi|567183404|ref|XP_006402675.1| hypothetical protein EUTSA_v10006298mg [Eutrema salsugineum] gi|557103773|gb|ESQ44127.1| hypothetical protein EUTSA_v10006298mg [Eutrema salsugineum] gi|557103774|gb|ESQ44128.1| hypothetical protein EUTSA_v10006298mg [Eutrema salsugineum] Length = 146 Score = 204 bits (520), Expect = 2e-50 Identities = 100/142 (70%), Positives = 122/142 (85%), Gaps = 1/142 (0%) Frame = -2 Query: 726 IMFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLALSTT 547 I+FEDIFV+ ++DP+GKKFDKV+R+EARS +M+M LDVN EVYP++VG+KFTLA++ T Sbjct: 6 ILFEDIFVVDKLDPDGKKFDKVTRVEARSHNLEMFMHLDVNTEVYPMAVGDKFTLAMAPT 65 Query: 546 LNLDGTPDTGYFIQG-RKTLADKYEYVMNGKVYKIDESGSGVAAKVELYVSYGGLLMLLK 370 LNLDGTPDTGYF G +KTLADKYEYVM+GK+YKI E G K ELYVS+GGLLMLL+ Sbjct: 66 LNLDGTPDTGYFTPGAKKTLADKYEYVMHGKLYKITER-DGKTPKAELYVSFGGLLMLLQ 124 Query: 369 GDPGNLSKFELDQRLFLLMRKV 304 GDP ++S FELDQRLFLLMRK+ Sbjct: 125 GDPAHISHFELDQRLFLLMRKL 146 >ref|XP_006397103.1| hypothetical protein EUTSA_v10029046mg [Eutrema salsugineum] gi|557098120|gb|ESQ38556.1| hypothetical protein EUTSA_v10029046mg [Eutrema salsugineum] Length = 146 Score = 204 bits (520), Expect = 2e-50 Identities = 99/142 (69%), Positives = 122/142 (85%), Gaps = 1/142 (0%) Frame = -2 Query: 726 IMFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLALSTT 547 IMFEDIFV+ ++DP+GKKFDKV+R+EARS +M+M LDVN EVYP++VG+KFT+A++ T Sbjct: 6 IMFEDIFVVDKLDPDGKKFDKVTRVEARSHNLEMFMHLDVNTEVYPMAVGDKFTMAMAPT 65 Query: 546 LNLDGTPDTGYFIQG-RKTLADKYEYVMNGKVYKIDESGSGVAAKVELYVSYGGLLMLLK 370 LNLDGTPDTGYF G +KTLADKYEY+M+GK+YKI E G K ELYVS+GGLLMLL+ Sbjct: 66 LNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKITER-DGKTPKAELYVSFGGLLMLLQ 124 Query: 369 GDPGNLSKFELDQRLFLLMRKV 304 GDP ++S FELDQRLFLLMRK+ Sbjct: 125 GDPAHISHFELDQRLFLLMRKL 146 >ref|XP_002466106.1| hypothetical protein SORBIDRAFT_01g001330 [Sorghum bicolor] gi|241919960|gb|EER93104.1| hypothetical protein SORBIDRAFT_01g001330 [Sorghum bicolor] Length = 145 Score = 204 bits (519), Expect = 3e-50 Identities = 100/145 (68%), Positives = 117/145 (80%), Gaps = 1/145 (0%) Frame = -2 Query: 735 MAGIMFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLAL 556 M+ +FED F++SR+DP+GKKFDKVSR+EARSEQ MYM LDV +VYP+ GEKF + L Sbjct: 1 MSEHLFEDTFIVSRLDPDGKKFDKVSRVEARSEQLGMYMQLDVATDVYPLRAGEKFNMVL 60 Query: 555 STTLNLDGTPDTGYFIQ-GRKTLADKYEYVMNGKVYKIDESGSGVAAKVELYVSYGGLLM 379 + TLNLDGTPDTGY+ Q GRKTLAD YEYVM GK+YKI E S AKVE+Y S+GGLLM Sbjct: 61 APTLNLDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKISEDTSSQNAKVEIYASFGGLLM 120 Query: 378 LLKGDPGNLSKFELDQRLFLLMRKV 304 LL+GDP + FELDQRLFLLMRKV Sbjct: 121 LLRGDPSTAASFELDQRLFLLMRKV 145 >ref|XP_003563485.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit rpabc3-like [Brachypodium distachyon] Length = 144 Score = 204 bits (518), Expect = 4e-50 Identities = 105/146 (71%), Positives = 123/146 (84%), Gaps = 2/146 (1%) Frame = -2 Query: 735 MAGIMFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLAL 556 MA +FEDIFV+SRIDP+GKKFD+V+RIEARSEQ MYM LDV +VYP+ G+KFT+ L Sbjct: 1 MAEHLFEDIFVVSRIDPDGKKFDRVNRIEARSEQ--MYMQLDVATDVYPMHAGDKFTMVL 58 Query: 555 STTLNLDGTPDTGYFIQ-GRKTLADKYEYVMNGKVYKIDESGSG-VAAKVELYVSYGGLL 382 + TLNLDGTPDTGY+ Q GRKTLADKY+YVM+GK+YKI E SG AAKVE+Y S+GGLL Sbjct: 59 APTLNLDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDSSGGQAAKVEIYASFGGLL 118 Query: 381 MLLKGDPGNLSKFELDQRLFLLMRKV 304 MLLKGDP + + ELDQRLFLLMRKV Sbjct: 119 MLLKGDPSSAANLELDQRLFLLMRKV 144 >ref|XP_002891800.1| ATRPABC16.5 [Arabidopsis lyrata subsp. lyrata] gi|297337642|gb|EFH68059.1| ATRPABC16.5 [Arabidopsis lyrata subsp. lyrata] Length = 146 Score = 203 bits (517), Expect = 5e-50 Identities = 99/142 (69%), Positives = 121/142 (85%), Gaps = 1/142 (0%) Frame = -2 Query: 726 IMFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLALSTT 547 I+FEDIFV+ ++DP+GKKFDKV+R++A S +M+M LDVN EVYP++VG+KFTLAL+ T Sbjct: 6 ILFEDIFVVDKLDPDGKKFDKVTRVQATSHNLEMFMHLDVNTEVYPLAVGDKFTLALAPT 65 Query: 546 LNLDGTPDTGYFIQG-RKTLADKYEYVMNGKVYKIDESGSGVAAKVELYVSYGGLLMLLK 370 LNLDGTPDTGYF G +KTLADKYEY+M+GK+YKI E G K ELYVS+GGLLMLLK Sbjct: 66 LNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKISER-DGKTPKAELYVSFGGLLMLLK 124 Query: 369 GDPGNLSKFELDQRLFLLMRKV 304 GDP ++S FELDQRLFLLMRK+ Sbjct: 125 GDPAHISHFELDQRLFLLMRKL 146 >ref|XP_006665034.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 8B-like [Oryza brachyantha] Length = 147 Score = 203 bits (516), Expect = 6e-50 Identities = 101/147 (68%), Positives = 123/147 (83%), Gaps = 3/147 (2%) Frame = -2 Query: 735 MAGIMFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLAL 556 MA +FEDIF ++R+DP+GKKFD+VSRIEAR+EQ ++YM LDV +VYP+ G+KFT+ L Sbjct: 1 MAEFLFEDIFTVTRLDPDGKKFDRVSRIEARNEQLNVYMQLDVATDVYPMHPGDKFTMVL 60 Query: 555 STTLNLDGTPDTGYFIQ-GRKTLADKYEYVMNGKVYKI--DESGSGVAAKVELYVSYGGL 385 TLNLDGTPDTG+F Q GRKTLADKYEYVM+GK+YKI D+ SG AKVE+Y S+GGL Sbjct: 61 VPTLNLDGTPDTGFFTQAGRKTLADKYEYVMHGKLYKISEDKETSGQNAKVEMYASFGGL 120 Query: 384 LMLLKGDPGNLSKFELDQRLFLLMRKV 304 LM+LKGDP + + FELDQRLFLLMRKV Sbjct: 121 LMMLKGDPSSAANFELDQRLFLLMRKV 147 >ref|NP_175827.1| DNA-directed RNA polymerases II and V subunit 8A [Arabidopsis thaliana] gi|75100070|sp|O81097.1|RPB8A_ARATH RecName: Full=DNA-directed RNA polymerases II and V subunit 8A; AltName: Full=RNA polymerase I, II and III 16.5 kDa subunit; Short=AtRPABC16.5 gi|4585968|gb|AAD25604.1|AC005287_6 RNA polymerase I, II and III 16.5 kDa subunit [Arabidopsis thaliana] gi|3372230|gb|AAC28252.1| RNA polymerase I, II and III 16.5 kDa subunit [Arabidopsis thaliana] gi|21555812|gb|AAM63939.1| RNA polymerase II subunit, putative [Arabidopsis thaliana] gi|28466897|gb|AAO44057.1| At1g54250 [Arabidopsis thaliana] gi|110735704|dbj|BAE99832.1| RNA polymerase I, II and III 16.5 kDa subunit [Arabidopsis thaliana] gi|332194950|gb|AEE33071.1| RNA polymerase Rpb8 [Arabidopsis thaliana] Length = 146 Score = 203 bits (516), Expect = 6e-50 Identities = 99/142 (69%), Positives = 121/142 (85%), Gaps = 1/142 (0%) Frame = -2 Query: 726 IMFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLALSTT 547 I+FEDIFV+ ++DP+GKKFDKV+R++A S +M+M LDVN EVYP++VG+KFTLAL+ T Sbjct: 6 ILFEDIFVVDQLDPDGKKFDKVTRVQATSHNLEMFMHLDVNTEVYPLAVGDKFTLALAPT 65 Query: 546 LNLDGTPDTGYFIQG-RKTLADKYEYVMNGKVYKIDESGSGVAAKVELYVSYGGLLMLLK 370 LNLDGTPDTGYF G +KTLADKYEY+M+GK+YKI E G K ELYVS+GGLLMLLK Sbjct: 66 LNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKISER-DGKTPKAELYVSFGGLLMLLK 124 Query: 369 GDPGNLSKFELDQRLFLLMRKV 304 GDP ++S FELDQRLFLLMRK+ Sbjct: 125 GDPAHISHFELDQRLFLLMRKL 146 >ref|XP_004234478.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit rpabc3-like isoform 1 [Solanum lycopersicum] gi|460377396|ref|XP_004234479.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit rpabc3-like isoform 2 [Solanum lycopersicum] Length = 145 Score = 202 bits (514), Expect = 1e-49 Identities = 95/145 (65%), Positives = 124/145 (85%), Gaps = 1/145 (0%) Frame = -2 Query: 735 MAGIMFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLAL 556 M +FEDIF +++ DP+GKKFD+V+RIEARSEQFDM+MLLDVN E+YP+ V +KF + L Sbjct: 1 MVETLFEDIFTVTQKDPDGKKFDRVNRIEARSEQFDMFMLLDVNTEIYPMRVKDKFMMVL 60 Query: 555 STTLNLDGTPDTGYFIQG-RKTLADKYEYVMNGKVYKIDESGSGVAAKVELYVSYGGLLM 379 ++TLNLDGTPDTGYFIQG +K+LADK+EYVM+GK+Y+I E GSG K +++VS+GGLLM Sbjct: 61 ASTLNLDGTPDTGYFIQGNKKSLADKFEYVMHGKLYRISEEGSGKHVKADIFVSFGGLLM 120 Query: 378 LLKGDPGNLSKFELDQRLFLLMRKV 304 L+GDP +KFELDQ++FLL+RKV Sbjct: 121 QLRGDPSIAAKFELDQKIFLLIRKV 145 >ref|XP_006343291.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 8B-like [Solanum tuberosum] Length = 145 Score = 202 bits (513), Expect = 1e-49 Identities = 94/145 (64%), Positives = 124/145 (85%), Gaps = 1/145 (0%) Frame = -2 Query: 735 MAGIMFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLAL 556 M +FEDIF +++ DP+GKKFD+V+RIEARSEQFDM+MLLD+N E+YP+ V +KF + L Sbjct: 1 MVETLFEDIFTVTQKDPDGKKFDRVNRIEARSEQFDMFMLLDINTEIYPMRVKDKFMMVL 60 Query: 555 STTLNLDGTPDTGYFIQG-RKTLADKYEYVMNGKVYKIDESGSGVAAKVELYVSYGGLLM 379 ++TLNLDGTPDTGYFIQG +K+LADK+EYVM+GK+Y+I E GSG K +++VS+GGLLM Sbjct: 61 ASTLNLDGTPDTGYFIQGNKKSLADKFEYVMHGKLYRISEEGSGKHVKADIFVSFGGLLM 120 Query: 378 LLKGDPGNLSKFELDQRLFLLMRKV 304 L+GDP +KFELDQ++FLL+RKV Sbjct: 121 QLRGDPSIAAKFELDQKIFLLIRKV 145 >ref|XP_004152137.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit rpabc3-like [Cucumis sativus] gi|449484745|ref|XP_004156968.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit rpabc3-like [Cucumis sativus] Length = 144 Score = 200 bits (509), Expect = 4e-49 Identities = 97/145 (66%), Positives = 124/145 (85%), Gaps = 1/145 (0%) Frame = -2 Query: 735 MAGIMFEDIFVISRIDPEGKKFDKVSRIEARSEQFDMYMLLDVNIEVYPVSVGEKFTLAL 556 M ++F+DIF I R++P+GKKFDKV+RIEA+SE+FDM+M LD+N E+YP+ GEKF++AL Sbjct: 1 MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYPLKEGEKFSMAL 60 Query: 555 STTLNLDGTPDTGYFIQG-RKTLADKYEYVMNGKVYKIDESGSGVAAKVELYVSYGGLLM 379 + TLNLDGTPDTGYF+QG RK+LAD+YEYVM GK+++I ES SG K E+ S+GGLLM Sbjct: 61 APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISES-SGHGGKAEIDASFGGLLM 119 Query: 378 LLKGDPGNLSKFELDQRLFLLMRKV 304 +LKGDP + SKFELDQRLFLL+RKV Sbjct: 120 MLKGDPSHCSKFELDQRLFLLIRKV 144