BLASTX nr result
ID: Ephedra25_contig00002418
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra25_contig00002418
(1675 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EOX97031.1| Smg-4/UPF3 family protein, putative isoform 1 [Th... 278 4e-72
ref|XP_006858584.1| hypothetical protein AMTR_s00071p00188270 [A... 272 3e-70
gb|EOX97032.1| Smg-4/UPF3 family protein, putative isoform 2, pa... 271 5e-70
ref|XP_004230442.1| PREDICTED: uncharacterized protein LOC101264... 268 7e-69
emb|CBI29694.3| unnamed protein product [Vitis vinifera] 266 2e-68
ref|XP_006349314.1| PREDICTED: regulator of nonsense transcripts... 265 3e-68
gb|EMJ23015.1| hypothetical protein PRUPE_ppa004923mg [Prunus pe... 265 4e-68
gb|EMJ23014.1| hypothetical protein PRUPE_ppa004923mg [Prunus pe... 265 4e-68
gb|EMJ27362.1| hypothetical protein PRUPE_ppa015218mg [Prunus pe... 261 5e-67
ref|XP_006385051.1| hypothetical protein POPTR_0004s23450g [Popu... 259 2e-66
ref|XP_002328787.1| predicted protein [Populus trichocarpa] gi|5... 259 2e-66
ref|XP_006492554.1| PREDICTED: regulator of nonsense transcripts... 257 9e-66
ref|XP_006431585.1| hypothetical protein CICLE_v10000901mg [Citr... 257 9e-66
ref|XP_004294505.1| PREDICTED: uncharacterized protein LOC101296... 256 2e-65
ref|XP_006389505.1| hypothetical protein POPTR_0022s00460g [Popu... 255 5e-65
gb|EXB88206.1| hypothetical protein L484_011635 [Morus notabilis] 254 6e-65
gb|EOY26875.1| Smg-4/UPF3 family protein, putative isoform 6 [Th... 254 6e-65
gb|EOY26874.1| Smg-4/UPF3 family protein, putative isoform 5 [Th... 254 6e-65
gb|EOY26871.1| Smg-4/UPF3 family protein, putative isoform 2 [Th... 254 6e-65
gb|EOY26870.1| Smg-4/UPF3 family protein, putative isoform 1 [Th... 254 6e-65
>gb|EOX97031.1| Smg-4/UPF3 family protein, putative isoform 1 [Theobroma cacao]
Length = 514
Score = 278 bits (712), Expect = 4e-72
Identities = 150/256 (58%), Positives = 187/256 (73%), Gaps = 10/256 (3%)
Frame = +3
Query: 627 DRTKVVVRHLPPGLSQSALKEQVDSRFAGRYDWFCFRPGKTSHRRQVYSRAYIEFRRPED 806
DRTKV++RHLPP ++++ L EQVD+ F+GRY+W FRPGK+S + Q YSRAYI+F+R ED
Sbjct: 6 DRTKVILRHLPPAITEAMLVEQVDTAFSGRYNWLSFRPGKSSQKHQSYSRAYIDFKRSED 65
Query: 807 VFEFSEAFGGHVFVNEKGTHYKAQVEYAPSQRVPKILNKKDSREGSIFKDSDYLEFLEML 986
V EF+E F GHVFVNEKGT +K VEYAPSQRVPK +KKD REG+I KD +YLEFLE L
Sbjct: 66 VLEFAEFFNGHVFVNEKGTQFKTIVEYAPSQRVPKRSSKKDGREGTILKDLEYLEFLECL 125
Query: 987 AKPTENLPSADIQLERKEAERAASGV-KENCVVTPLMDFVRQKRAAKGGSQRNASSAKLG 1163
KP ENLPSA+IQLERKEAERA GV K+ +VTPLMDFVRQKRAAKGGS+R+ S+ KL
Sbjct: 126 GKPVENLPSAEIQLERKEAERA--GVPKDTPIVTPLMDFVRQKRAAKGGSRRSLSNGKLS 183
Query: 1164 RRAGANSIVGPS-------VHXXXXXXXXXXXXXSSRIASGKEKSAYVVVSRPDEQAEPD 1322
RRAG +S PS S + ASGK+KS Y++VS+ DEQ D
Sbjct: 184 RRAGGSSGGTPSSASSKRGSEKRRGSTTMYVLRDSLKNASGKDKSTYILVSKRDEQQLSD 243
Query: 1323 KTISHSSNV--ELAEE 1364
K ++ +S++ E++EE
Sbjct: 244 KHVALASSMGTEISEE 259
>ref|XP_006858584.1| hypothetical protein AMTR_s00071p00188270 [Amborella trichopoda]
gi|548862693|gb|ERN20051.1| hypothetical protein
AMTR_s00071p00188270 [Amborella trichopoda]
Length = 599
Score = 272 bits (696), Expect = 3e-70
Identities = 160/316 (50%), Positives = 200/316 (63%), Gaps = 11/316 (3%)
Frame = +3
Query: 609 MKDPNKDRTKVVVRHLPPGLSQSALKEQVDSRFAGRYDWFCFRPGKTSHRRQVYSRAYIE 788
MKDP DRTKVVVR LPP L+Q AL E++DSRF+GRY+W FRPGK S + Q +SR YI+
Sbjct: 1 MKDP-LDRTKVVVRRLPPALTQQALMEKIDSRFSGRYEWAAFRPGKNSLKNQRHSRIYID 59
Query: 789 FRRPEDVFEFSEAFGGHVFVNEKGTHYKAQVEYAPSQRVPKILNKKDSREGSIFKDSDYL 968
F+RPEDV EF+E F GHVFVNEKG+ +KA VEYAPSQRVPK +KKD REG+IFKD +YL
Sbjct: 60 FKRPEDVLEFAEFFVGHVFVNEKGSQFKAVVEYAPSQRVPKPWSKKDGREGTIFKDPEYL 119
Query: 969 EFLEMLAKPTENLPSADIQLERKEAERAASGVKENCVVTPLMDFVRQKRAAKGGSQRNAS 1148
EFLE LAKP ENLPSA+IQLER+EAERA + KE+ +VTPLMDFVRQKRAAK G+ R+++
Sbjct: 120 EFLEFLAKPAENLPSAEIQLERREAERAGAS-KESLIVTPLMDFVRQKRAAKSGTLRSSA 178
Query: 1149 SAKLGRRAGANSIVGPSVHXXXXXXXXXXXXXSSRI-------ASGKEKSAYVVVSRPDE 1307
+ K RR+ S P + S + S K+KS Y +V R DE
Sbjct: 179 NGKTSRRSTGVSSTSPGSNSQKRGPERRKISTSMYVLRDSTKGTSSKDKSTYGLVPRRDE 238
Query: 1308 QAEPDKTISHSSNVELAEETAQSSRTA----VDGATMGYGNVETGXXXXXXXXXXXXEPI 1475
Q PD + + S+ LA A + V AT+G G +E+G E
Sbjct: 239 QKLPDNSSAVSA---LAGPEALDDESVGVADVTAATVG-GTLESGKKKVLLLKGKDREAS 294
Query: 1476 NAGMGRITDTSMSSNI 1523
A + ++SS I
Sbjct: 295 QASGSVVQQQTVSSPI 310
>gb|EOX97032.1| Smg-4/UPF3 family protein, putative isoform 2, partial [Theobroma
cacao]
Length = 440
Score = 271 bits (694), Expect = 5e-70
Identities = 150/263 (57%), Positives = 187/263 (71%), Gaps = 17/263 (6%)
Frame = +3
Query: 627 DRTKVVVRHLPPGLSQSALKEQVDSRFAGRYDWFCFRPGKTSHRRQVYSRAYIEFRRPED 806
DRTKV++RHLPP ++++ L EQVD+ F+GRY+W FRPGK+S + Q YSRAYI+F+R ED
Sbjct: 6 DRTKVILRHLPPAITEAMLVEQVDTAFSGRYNWLSFRPGKSSQKHQSYSRAYIDFKRSED 65
Query: 807 VFEFSEAFGGHVFVNEKGTHYKAQVEYAPSQRVPKILNKKDSREGSIFK-------DSDY 965
V EF+E F GHVFVNEKGT +K VEYAPSQRVPK +KKD REG+I K D +Y
Sbjct: 66 VLEFAEFFNGHVFVNEKGTQFKTIVEYAPSQRVPKRSSKKDGREGTILKVFLDEHLDLEY 125
Query: 966 LEFLEMLAKPTENLPSADIQLERKEAERAASGV-KENCVVTPLMDFVRQKRAAKGGSQRN 1142
LEFLE L KP ENLPSA+IQLERKEAERA GV K+ +VTPLMDFVRQKRAAKGGS+R+
Sbjct: 126 LEFLECLGKPVENLPSAEIQLERKEAERA--GVPKDTPIVTPLMDFVRQKRAAKGGSRRS 183
Query: 1143 ASSAKLGRRAGANSIVGPS-------VHXXXXXXXXXXXXXSSRIASGKEKSAYVVVSRP 1301
S+ KL RRAG +S PS S + ASGK+KS Y++VS+
Sbjct: 184 LSNGKLSRRAGGSSGGTPSSASSKRGSEKRRGSTTMYVLRDSLKNASGKDKSTYILVSKR 243
Query: 1302 DEQAEPDKTISHSSNV--ELAEE 1364
DEQ DK ++ +S++ E++EE
Sbjct: 244 DEQQLSDKHVALASSMGTEISEE 266
>ref|XP_004230442.1| PREDICTED: uncharacterized protein LOC101264766 [Solanum
lycopersicum]
Length = 485
Score = 268 bits (684), Expect = 7e-69
Identities = 145/260 (55%), Positives = 179/260 (68%), Gaps = 8/260 (3%)
Frame = +3
Query: 609 MKDPNKDRTKVVVRHLPPGLSQSALKEQVDSRFAGRYDWFCFRPGKTSHRRQVYSRAYIE 788
MK P DR+KVV+RHLPP +SQS L +QVDSRFAGRY+WFCF PGK+S + Q YSRAYIE
Sbjct: 1 MKGP-LDRSKVVLRHLPPTISQSMLLDQVDSRFAGRYNWFCFLPGKSSQKHQTYSRAYIE 59
Query: 789 FRRPEDVFEFSEAFGGHVFVNEKGTHYKAQVEYAPSQRVPKILNKKDSREGSIFKDSDYL 968
F+RPEDV EF+E F GHVFVNEKGT +K VEYAPSQRVP+ +KKD REG+I KD +YL
Sbjct: 60 FKRPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRVPQHWSKKDGREGTILKDPEYL 119
Query: 969 EFLEMLAKPTENLPSADIQLERKEAERAASGVKENCVVTPLMDFVRQKRAAKGGSQRNAS 1148
EFLE ++KP ENLPSA+IQLERKEAERA S K+ +VTPLMD++RQKRAAK G++++ +
Sbjct: 120 EFLEFISKPIENLPSAEIQLERKEAERAGS-AKDAPIVTPLMDYIRQKRAAKSGARKSIA 178
Query: 1149 SAKLGRRAGANSIVGP-------SVHXXXXXXXXXXXXXSSRIASGKEKSAYVVVSRPDE 1307
+ + RRA S P S SS+ SGK+K+ + R D+
Sbjct: 179 NGRPTRRASGTSAGSPSSSASKRSSEKRRASTTMYVLRDSSKAGSGKDKTYILAPKRDDQ 238
Query: 1308 Q-AEPDKTISHSSNVELAEE 1364
Q AE T + S EE
Sbjct: 239 QRAEKSGTSAPGSVANAVEE 258
>emb|CBI29694.3| unnamed protein product [Vitis vinifera]
Length = 519
Score = 266 bits (681), Expect = 2e-68
Identities = 140/249 (56%), Positives = 179/249 (71%), Gaps = 7/249 (2%)
Frame = +3
Query: 609 MKDPNKDRTKVVVRHLPPGLSQSALKEQVDSRFAGRYDWFCFRPGKTSHRRQVYSRAYIE 788
MK P DRTKVVVRHLPP +S++A EQ+D+ F GRY FRPGK S +RQ YSRAY++
Sbjct: 1 MKGP-LDRTKVVVRHLPPTISEAAFLEQIDTVFKGRYTLVKFRPGKNSQKRQSYSRAYLD 59
Query: 789 FRRPEDVFEFSEAFGGHVFVNEKGTHYKAQVEYAPSQRVPKILNKKDSREGSIFKDSDYL 968
F+RPEDV EF+E F GHVFVNEKGT +K VEYAPSQR+PK KKD REG+IFKD +Y+
Sbjct: 60 FKRPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRIPKHWPKKDGREGTIFKDPEYM 119
Query: 969 EFLEMLAKPTENLPSADIQLERKEAERAASGVKENCVVTPLMDFVRQKRAAKGGSQRNAS 1148
EF+E+LAKP ENLPSA+IQLER+EAERA + VK+ +VTPLMDFVRQKRAAKG S+R+ S
Sbjct: 120 EFVELLAKPVENLPSAEIQLERREAERAGA-VKDTPIVTPLMDFVRQKRAAKGVSRRSLS 178
Query: 1149 SAKLGRRAGANSIVGPSV-------HXXXXXXXXXXXXXSSRIASGKEKSAYVVVSRPDE 1307
+ KL RRA +S PS+ +++ S K+KS +++V + D+
Sbjct: 179 NGKLSRRASGSSSGNPSLGSSKRGSEKRRLSTTMYVLRDTAKSTSAKDKSTFILVPKRDD 238
Query: 1308 QAEPDKTIS 1334
Q DK+++
Sbjct: 239 QLLSDKSVN 247
>ref|XP_006349314.1| PREDICTED: regulator of nonsense transcripts UPF3-like [Solanum
tuberosum]
Length = 483
Score = 265 bits (678), Expect = 3e-68
Identities = 144/260 (55%), Positives = 177/260 (68%), Gaps = 8/260 (3%)
Frame = +3
Query: 609 MKDPNKDRTKVVVRHLPPGLSQSALKEQVDSRFAGRYDWFCFRPGKTSHRRQVYSRAYIE 788
MK P DR+KVV+RHLPP +SQS L +QVDSRFAGRY+WFCF PGK+S + Q YSRAYIE
Sbjct: 1 MKGP-LDRSKVVLRHLPPTISQSMLLDQVDSRFAGRYNWFCFLPGKSSQKHQTYSRAYIE 59
Query: 789 FRRPEDVFEFSEAFGGHVFVNEKGTHYKAQVEYAPSQRVPKILNKKDSREGSIFKDSDYL 968
F+ PEDV EF+E F GHVFVNEKGT +K VEYAPSQRVPK +KKD REG+I KD +YL
Sbjct: 60 FKMPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRVPKHWSKKDGREGTILKDPEYL 119
Query: 969 EFLEMLAKPTENLPSADIQLERKEAERAASGVKENCVVTPLMDFVRQKRAAKGGSQRNAS 1148
EFLE ++KP ENLPSA+IQLERKEAERA S K+ +VTPLMD++RQKRAAK G++++ +
Sbjct: 120 EFLEFISKPIENLPSAEIQLERKEAERAGS-AKDAPIVTPLMDYIRQKRAAKSGARKSIA 178
Query: 1149 SAKLGRRAGANSIVGP-------SVHXXXXXXXXXXXXXSSRIASGKEKSAYVVVSRPDE 1307
+ + RR S P S SS+ SGK+K+ + R D+
Sbjct: 179 NGRPTRRTSGTSTGSPSSSASKRSSEKRRASTTMYVLRDSSKAGSGKDKTYILAPKRDDQ 238
Query: 1308 Q-AEPDKTISHSSNVELAEE 1364
Q AE T + S EE
Sbjct: 239 QRAEKSGTSAAGSVANAVEE 258
>gb|EMJ23015.1| hypothetical protein PRUPE_ppa004923mg [Prunus persica]
Length = 485
Score = 265 bits (677), Expect = 4e-68
Identities = 140/265 (52%), Positives = 183/265 (69%), Gaps = 10/265 (3%)
Frame = +3
Query: 627 DRTKVVVRHLPPGLSQSALKEQVDSRFAGRYDWFCFRPGKTSHRRQVYSRAYIEFRRPED 806
DRTKVV+RHLPP +SQ++L EQ+D F+GRY+W FRPGK S + YSRAYI+ +RPED
Sbjct: 7 DRTKVVLRHLPPSISQTSLVEQIDVFFSGRYNWVAFRPGKRSQKNPSYSRAYIDLKRPED 66
Query: 807 VFEFSEAFGGHVFVNEKGTHYKAQVEYAPSQRVPKILNKKDSREGSIFKDSDYLEFLEML 986
V EF+E F GH+FVNEKG+ +K VEYAPSQRVPK +KKD REG+IF+D +YLEFLE L
Sbjct: 67 VIEFAEFFDGHLFVNEKGSQFKVIVEYAPSQRVPKQWSKKDGREGTIFRDPEYLEFLEFL 126
Query: 987 AKPTENLPSADIQLERKEAERAASGVKENCVVTPLMDFVRQKRAAKGGSQRNASSAKLGR 1166
AKP ENLPSA+IQLER+EAER+ +G K+ +VTPLMDFVRQKRA+K GS+R+ ++ K R
Sbjct: 127 AKPAENLPSAEIQLERREAERSGAG-KDAPIVTPLMDFVRQKRASKAGSRRSLTNGKTSR 185
Query: 1167 RAGANSIVGPSV-------HXXXXXXXXXXXXXSSRIASGKEKSAYVVVSRPDEQAEPDK 1325
RAG S PS+ + + S K+KS Y++V + D+Q +K
Sbjct: 186 RAGGPSSRSPSLATSKRGSERKRNSATMYVLRDARKNTSAKDKSTYILVPKRDDQQPSEK 245
Query: 1326 TISHSSNV---ELAEETAQSSRTAV 1391
+++ +S L EE+ S AV
Sbjct: 246 SVTLASAAGTHVLEEESGVSGADAV 270
>gb|EMJ23014.1| hypothetical protein PRUPE_ppa004923mg [Prunus persica]
Length = 482
Score = 265 bits (677), Expect = 4e-68
Identities = 140/265 (52%), Positives = 183/265 (69%), Gaps = 10/265 (3%)
Frame = +3
Query: 627 DRTKVVVRHLPPGLSQSALKEQVDSRFAGRYDWFCFRPGKTSHRRQVYSRAYIEFRRPED 806
DRTKVV+RHLPP +SQ++L EQ+D F+GRY+W FRPGK S + YSRAYI+ +RPED
Sbjct: 7 DRTKVVLRHLPPSISQTSLVEQIDVFFSGRYNWVAFRPGKRSQKNPSYSRAYIDLKRPED 66
Query: 807 VFEFSEAFGGHVFVNEKGTHYKAQVEYAPSQRVPKILNKKDSREGSIFKDSDYLEFLEML 986
V EF+E F GH+FVNEKG+ +K VEYAPSQRVPK +KKD REG+IF+D +YLEFLE L
Sbjct: 67 VIEFAEFFDGHLFVNEKGSQFKVIVEYAPSQRVPKQWSKKDGREGTIFRDPEYLEFLEFL 126
Query: 987 AKPTENLPSADIQLERKEAERAASGVKENCVVTPLMDFVRQKRAAKGGSQRNASSAKLGR 1166
AKP ENLPSA+IQLER+EAER+ +G K+ +VTPLMDFVRQKRA+K GS+R+ ++ K R
Sbjct: 127 AKPAENLPSAEIQLERREAERSGAG-KDAPIVTPLMDFVRQKRASKAGSRRSLTNGKTSR 185
Query: 1167 RAGANSIVGPSV-------HXXXXXXXXXXXXXSSRIASGKEKSAYVVVSRPDEQAEPDK 1325
RAG S PS+ + + S K+KS Y++V + D+Q +K
Sbjct: 186 RAGGPSSRSPSLATSKRGSERKRNSATMYVLRDARKNTSAKDKSTYILVPKRDDQQPSEK 245
Query: 1326 TISHSSNV---ELAEETAQSSRTAV 1391
+++ +S L EE+ S AV
Sbjct: 246 SVTLASAAGTHVLEEESGVSGADAV 270
>gb|EMJ27362.1| hypothetical protein PRUPE_ppa015218mg [Prunus persica]
Length = 467
Score = 261 bits (668), Expect = 5e-67
Identities = 138/244 (56%), Positives = 175/244 (71%), Gaps = 2/244 (0%)
Frame = +3
Query: 609 MKDPNKDRTKVVVRHLPPGLSQSALKEQVDSRFAGRYDWFCFRPGKTSHRRQVYSRAYIE 788
MKDP RTKV+VRHLPP LS S L +Q+D + A RY+WFCFRPGK S + Q YSRAYI+
Sbjct: 1 MKDPLV-RTKVLVRHLPPSLSHSDLLQQIDHQLADRYNWFCFRPGKNSQKNQRYSRAYID 59
Query: 789 FRRPEDVFEFSEAFGGHVFVNEKGTHYKAQVEYAPSQRVPKILNKKDSREGSIFKDSDYL 968
F+RPEDVFEF+E F GHVFVNEKG+ +KA VEYAPSQRVPK KKD REG+I+KD DYL
Sbjct: 60 FKRPEDVFEFAEFFDGHVFVNEKGSQFKAIVEYAPSQRVPKPCTKKDGREGTIYKDPDYL 119
Query: 969 EFLEMLAKPTENLPSADIQLERKEAERAASGVKENCVVTPLMDFVRQKRAAKGGSQRNAS 1148
EFL+++AKP E+LPSA+IQLERKEAE+ A G KE ++TPLM++VRQKRA G+Q ++
Sbjct: 120 EFLKLIAKPVEHLPSAEIQLERKEAEQ-AGGAKEPPIITPLMEYVRQKRAIGSGTQVSSV 178
Query: 1149 SAKLGRRAGANSI--VGPSVHXXXXXXXXXXXXXSSRIASGKEKSAYVVVSRPDEQAEPD 1322
K+ RRAGA S+ G + S++ S K+KS + VV R ++Q
Sbjct: 179 VRKVRRRAGAASLNKRGSTSTKRVSEKKKYILKDSAKHTSRKDKSTFTVVPRREDQLASS 238
Query: 1323 KTIS 1334
++S
Sbjct: 239 SSVS 242
>ref|XP_006385051.1| hypothetical protein POPTR_0004s23450g [Populus trichocarpa]
gi|550341819|gb|ERP62848.1| hypothetical protein
POPTR_0004s23450g [Populus trichocarpa]
Length = 520
Score = 259 bits (663), Expect = 2e-66
Identities = 136/252 (53%), Positives = 173/252 (68%), Gaps = 6/252 (2%)
Frame = +3
Query: 627 DRTKVVVRHLPPGLSQSALKEQVDSRFAGRYDWFCFRPGKTSHRRQVYSRAYIEFRRPED 806
D+TKVVVRHLPPG+SQ EQ+D F+GRY+W +RPG S + Q YSRAYI+F+RPED
Sbjct: 8 DKTKVVVRHLPPGISQPMFVEQIDVAFSGRYNWLSYRPGNNSQKHQSYSRAYIDFKRPED 67
Query: 807 VFEFSEAFGGHVFVNEKGTHYKAQVEYAPSQRVPKILNKKDSREGSIFKDSDYLEFLEML 986
V +F+E F GH+FVNEKGT +KA VEY+PSQRVPK +KKD REG+I KD +YLEFLE++
Sbjct: 68 VIDFAEFFNGHIFVNEKGTQFKAIVEYSPSQRVPKQWSKKDGREGTISKDPEYLEFLELI 127
Query: 987 AKPTENLPSADIQLERKEAERAASGVKENCVVTPLMDFVRQKRAAKGGSQRNASSAKLGR 1166
AKP ENLPSA+IQLER+EAERA + K+ +VTPLMDFVRQKR AK G +R S+ KL R
Sbjct: 128 AKPVENLPSAEIQLERREAERAGA-AKDAPIVTPLMDFVRQKRVAKNGPRRILSNGKLSR 186
Query: 1167 RAG-----ANSIVGPSVHXXXXXXXXXXXXXSSRIASGKEKSAYV-VVSRPDEQAEPDKT 1328
RAG ++S + +++ SGK+KS YV V R D+Q T
Sbjct: 187 RAGGSGSPSSSSLKRGSEKKRISTTMYVLRDTAKSTSGKDKSTYVHVPKRDDQQLSNAVT 246
Query: 1329 ISHSSNVELAEE 1364
+ S + E+
Sbjct: 247 LGSGSGTAVLED 258
>ref|XP_002328787.1| predicted protein [Populus trichocarpa]
gi|566168252|ref|XP_006385052.1| Smg-4/UPF3 family
protein [Populus trichocarpa] gi|550341820|gb|ERP62849.1|
Smg-4/UPF3 family protein [Populus trichocarpa]
Length = 527
Score = 259 bits (663), Expect = 2e-66
Identities = 136/252 (53%), Positives = 173/252 (68%), Gaps = 6/252 (2%)
Frame = +3
Query: 627 DRTKVVVRHLPPGLSQSALKEQVDSRFAGRYDWFCFRPGKTSHRRQVYSRAYIEFRRPED 806
D+TKVVVRHLPPG+SQ EQ+D F+GRY+W +RPG S + Q YSRAYI+F+RPED
Sbjct: 8 DKTKVVVRHLPPGISQPMFVEQIDVAFSGRYNWLSYRPGNNSQKHQSYSRAYIDFKRPED 67
Query: 807 VFEFSEAFGGHVFVNEKGTHYKAQVEYAPSQRVPKILNKKDSREGSIFKDSDYLEFLEML 986
V +F+E F GH+FVNEKGT +KA VEY+PSQRVPK +KKD REG+I KD +YLEFLE++
Sbjct: 68 VIDFAEFFNGHIFVNEKGTQFKAIVEYSPSQRVPKQWSKKDGREGTISKDPEYLEFLELI 127
Query: 987 AKPTENLPSADIQLERKEAERAASGVKENCVVTPLMDFVRQKRAAKGGSQRNASSAKLGR 1166
AKP ENLPSA+IQLER+EAERA + K+ +VTPLMDFVRQKR AK G +R S+ KL R
Sbjct: 128 AKPVENLPSAEIQLERREAERAGA-AKDAPIVTPLMDFVRQKRVAKNGPRRILSNGKLSR 186
Query: 1167 RAG-----ANSIVGPSVHXXXXXXXXXXXXXSSRIASGKEKSAYV-VVSRPDEQAEPDKT 1328
RAG ++S + +++ SGK+KS YV V R D+Q T
Sbjct: 187 RAGGSGSPSSSSLKRGSEKKRISTTMYVLRDTAKSTSGKDKSTYVHVPKRDDQQLSNAVT 246
Query: 1329 ISHSSNVELAEE 1364
+ S + E+
Sbjct: 247 LGSGSGTAVLED 258
>ref|XP_006492554.1| PREDICTED: regulator of nonsense transcripts UPF3-like [Citrus
sinensis]
Length = 514
Score = 257 bits (657), Expect = 9e-66
Identities = 137/252 (54%), Positives = 175/252 (69%), Gaps = 7/252 (2%)
Frame = +3
Query: 609 MKDPNKDRTKVVVRHLPPGLSQSALKEQVDSRFAGRYDWFCFRPGKTSHRRQVYSRAYIE 788
MK P DRTKVVVR+LPP ++Q A EQ+D F GRY+W FR GKTS + Q +RAY++
Sbjct: 1 MKGP-LDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLD 59
Query: 789 FRRPEDVFEFSEAFGGHVFVNEKGTHYKAQVEYAPSQRVPKILNKKDSREGSIFKDSDYL 968
F++PEDV EF+E F GHVFVNEKG +K VEYAPSQRVPK +KKD REG++ KD +YL
Sbjct: 60 FKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYL 119
Query: 969 EFLEMLAKPTENLPSADIQLERKEAERAASGVKENCVVTPLMDFVRQKRAAKGGSQRNAS 1148
EFLE ++KP ENLPSA+IQLER+EAERA + KE +VTPLMDFVRQKRAAK G +R S
Sbjct: 120 EFLEFISKPVENLPSAEIQLERREAERAGA-AKEALIVTPLMDFVRQKRAAKAGPRRLLS 178
Query: 1149 SAKLGRRAGANSIVGPS-------VHXXXXXXXXXXXXXSSRIASGKEKSAYVVVSRPDE 1307
+ KL RRA +S P+ +++ +SGK+KS Y++V + D+
Sbjct: 179 NGKLSRRASGSSTGSPASGSSKRGSDKKKASTTMYVLRDTAKNSSGKDKSTYILVPKRDD 238
Query: 1308 QAEPDKTISHSS 1343
Q + DK +S SS
Sbjct: 239 Q-DFDKPVSSSS 249
>ref|XP_006431585.1| hypothetical protein CICLE_v10000901mg [Citrus clementina]
gi|557533707|gb|ESR44825.1| hypothetical protein
CICLE_v10000901mg [Citrus clementina]
Length = 514
Score = 257 bits (657), Expect = 9e-66
Identities = 137/252 (54%), Positives = 175/252 (69%), Gaps = 7/252 (2%)
Frame = +3
Query: 609 MKDPNKDRTKVVVRHLPPGLSQSALKEQVDSRFAGRYDWFCFRPGKTSHRRQVYSRAYIE 788
MK P DRTKVVVR+LPP ++Q A EQ+D F GRY+W FR GKTS + Q +RAY++
Sbjct: 1 MKGP-LDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLD 59
Query: 789 FRRPEDVFEFSEAFGGHVFVNEKGTHYKAQVEYAPSQRVPKILNKKDSREGSIFKDSDYL 968
F++PEDV EF+E F GHVFVNEKG +K VEYAPSQRVPK +KKD REG++ KD +YL
Sbjct: 60 FKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYL 119
Query: 969 EFLEMLAKPTENLPSADIQLERKEAERAASGVKENCVVTPLMDFVRQKRAAKGGSQRNAS 1148
EFLE ++KP ENLPSA+IQLER+EAERA + KE +VTPLMDFVRQKRAAK G +R S
Sbjct: 120 EFLEFISKPVENLPSAEIQLERREAERAGA-AKEALIVTPLMDFVRQKRAAKAGPRRLLS 178
Query: 1149 SAKLGRRAGANSIVGPS-------VHXXXXXXXXXXXXXSSRIASGKEKSAYVVVSRPDE 1307
+ KL RRA +S P+ +++ +SGK+KS Y++V + D+
Sbjct: 179 NGKLSRRASGSSTGSPASGSSKRGSDKKKASTTMYVLRDTAKNSSGKDKSTYILVPKRDD 238
Query: 1308 QAEPDKTISHSS 1343
Q + DK +S SS
Sbjct: 239 Q-DFDKPVSSSS 249
>ref|XP_004294505.1| PREDICTED: uncharacterized protein LOC101296641 [Fragaria vesca
subsp. vesca]
Length = 515
Score = 256 bits (655), Expect = 2e-65
Identities = 134/236 (56%), Positives = 171/236 (72%), Gaps = 2/236 (0%)
Frame = +3
Query: 609 MKDPNKDRTKVVVRHLPPGLSQSALKEQVDSRFAGRYDWFCFRPGKTSHRRQVYSRAYIE 788
MKDP RTKV+VRHLPP LSQS +Q+D F R++WFCFRPGK SH+ Q YSRAYIE
Sbjct: 1 MKDPLV-RTKVLVRHLPPSLSQSDFFQQIDHLFGDRHNWFCFRPGKNSHKHQRYSRAYIE 59
Query: 789 FRRPEDVFEFSEAFGGHVFVNEKGTHYKAQVEYAPSQRVPKILNKKDSREGSIFKDSDYL 968
F+RPEDVFEF+E F GHVFVNEKGT +K+ VEYAPSQRVPK NKKD REG+I+KD DYL
Sbjct: 60 FKRPEDVFEFAEFFDGHVFVNEKGTQFKSIVEYAPSQRVPKPSNKKDGREGTIYKDPDYL 119
Query: 969 EFLEMLAKPTENLPSADIQLERKEAERAASGVKENCVVTPLMDFVRQKRAAKGGSQRNAS 1148
EFL+++AKP E+LPSA+IQLERKEAE+A + KE +VTPLM+++RQKRA G+Q ++
Sbjct: 120 EFLKLIAKPAEHLPSAEIQLERKEAEQAGA-AKEAPIVTPLMEYIRQKRAVGSGTQISSV 178
Query: 1149 SAKLGRRAGANSIV--GPSVHXXXXXXXXXXXXXSSRIASGKEKSAYVVVSRPDEQ 1310
K+ RR GA S G + +++ S K++S + V+ R ++Q
Sbjct: 179 VRKVRRRTGAASFSKRGSTSTKRVSEKKKYILKDTAKYTSRKDRSTFNVLPRREDQ 234
>ref|XP_006389505.1| hypothetical protein POPTR_0022s00460g [Populus trichocarpa]
gi|550312328|gb|ERP48419.1| hypothetical protein
POPTR_0022s00460g [Populus trichocarpa]
Length = 511
Score = 255 bits (651), Expect = 5e-65
Identities = 141/271 (52%), Positives = 175/271 (64%), Gaps = 6/271 (2%)
Frame = +3
Query: 609 MKDPNKDRTKVVVRHLPPGLSQSALKEQVDSRFAGRYDWFCFRPGKTSHRRQVYSRAYIE 788
MK D+TKVVVRHLPPG+SQ EQ+D F+GRY+W +RPGK+S + Q SRAYI+
Sbjct: 1 MKVGQSDKTKVVVRHLPPGVSQPMFVEQIDLAFSGRYNWLSYRPGKSSQKHQSCSRAYID 60
Query: 789 FRRPEDVFEFSEAFGGHVFVNEKGTHYKAQVEYAPSQRVPKILNKKDSREGSIFKDSDYL 968
F+RP+DV +F+E F GH+FVNEKGT +KA VEYAPSQ VPK +KKD REG+I KD +YL
Sbjct: 61 FKRPDDVIDFAEFFNGHLFVNEKGTQFKAIVEYAPSQHVPKQWSKKDGREGTILKDPEYL 120
Query: 969 EFLEMLAKPTENLPSADIQLERKEAERAASGVKENCVVTPLMDFVRQKRAAKGGSQRNAS 1148
EFLE +AKP ENLPSA+IQLER+EAERA K+ +VTPLM+F+RQKRAAK G +R S
Sbjct: 121 EFLEFIAKPVENLPSAEIQLERREAERAGV-AKDAPIVTPLMEFIRQKRAAKSGPRRILS 179
Query: 1149 SAKLGRRAGANSIVGPS-----VHXXXXXXXXXXXXXSSRIASGKEKSAYVVVSR-PDEQ 1310
+ K RRAG + S + + SGKEKS Y V + D Q
Sbjct: 180 NGKPSRRAGGSGSPSSSSSKRGSEKKRASTTMYVLRDTVKGTSGKEKSIYAQVPKLDDRQ 239
Query: 1311 AEPDKTISHSSNVELAEETAQSSRTAVDGAT 1403
T+ S E++EE TAV G T
Sbjct: 240 LSKAVTLGSGSGTEVSEE-----ETAVSGIT 265
>gb|EXB88206.1| hypothetical protein L484_011635 [Morus notabilis]
Length = 533
Score = 254 bits (650), Expect = 6e-65
Identities = 148/308 (48%), Positives = 194/308 (62%), Gaps = 4/308 (1%)
Frame = +3
Query: 609 MKDPNKDRTKVVVRHLPPGLSQSALKEQVDSRFAGRYDWFCFRPGKTSHRRQVYSRAYIE 788
MKDP RTK VVR LPP LSQS L +Q+D RF+GRY WFCFRPGK S + Q YSRAYI+
Sbjct: 1 MKDP-LSRTKAVVRRLPPSLSQSDLFQQIDDRFSGRYHWFCFRPGKNSQKHQRYSRAYID 59
Query: 789 FRRPEDVFEFSEAFGGHVFVNEKGTHYKAQVEYAPSQRVPKILNKKDSREGSIFKDSDYL 968
F R EDV EF+E F GHVFVNEKG YK VEYAPSQRVPK+ +KD R+G+I+KD DYL
Sbjct: 60 FNRAEDVLEFAEFFDGHVFVNEKGVQYKTVVEYAPSQRVPKLSTRKDGRDGTIYKDPDYL 119
Query: 969 EFLEMLAKPTENLPSADIQLERKEAERAASGVKENCVVTPLMDFVRQKRAAKGGSQRNAS 1148
EFL+++AKP E+LPSA+IQLERKEAE+A + KE +VTPLM++VRQKR+ + G+Q +
Sbjct: 120 EFLKLIAKPVEHLPSAEIQLERKEAEQAGA-PKEAPIVTPLMEYVRQKRSIETGAQGSLV 178
Query: 1149 SAKLGRRAGANSI--VGPSVHXXXXXXXXXXXXXSSRIASGKEKSAYVVVSRPDEQAEPD 1322
K+ RR+GA S G S ++ S K+KS + VV R ++Q
Sbjct: 179 VRKISRRSGAGSTRKPGSSSAKRASEKKKYILKEKTKNTSRKDKSTFTVVPRREDQ---- 234
Query: 1323 KTISHSSNVELAEETAQSSRTAVDGATMGYGNV-ETGXXXXXXXXXXXXE-PINAGMGRI 1496
++ S+ E E S A++G+ G + ++G E P+ GM +
Sbjct: 235 --LATSTGKETHETEIVS---AIEGSVSGIPVIADSGKKKFLLLKGKRPETPVPTGMLQQ 289
Query: 1497 TDTSMSSN 1520
DTS ++
Sbjct: 290 QDTSFGNS 297
>gb|EOY26875.1| Smg-4/UPF3 family protein, putative isoform 6 [Theobroma cacao]
Length = 450
Score = 254 bits (650), Expect = 6e-65
Identities = 136/238 (57%), Positives = 168/238 (70%), Gaps = 1/238 (0%)
Frame = +3
Query: 609 MKDPNKDRTKVVVRHLPPGLSQSALKEQVDSRFAGRYDWFCFRPGKTSHRRQVYSRAYIE 788
MK+P + RTKVV+RHLPP ++QS L Q+D RF+ RY+WF FR GK+SH+ Q YSRAYI
Sbjct: 1 MKEPLR-RTKVVIRHLPPSVTQSFLFSQIDDRFSDRYNWFSFRLGKSSHKHQRYSRAYIN 59
Query: 789 FRRPEDVFEFSEAFGGHVFVNEKGTHYKAQVEYAPSQRVPKILNKKDSREGSIFKDSDYL 968
F+RPEDVFEF+E F GHVFVNEKGT +KA VEYAPSQRVPK KKD REG+IFKD DYL
Sbjct: 60 FKRPEDVFEFAEFFDGHVFVNEKGTQFKAIVEYAPSQRVPKPGTKKDGREGTIFKDPDYL 119
Query: 969 EFLEMLAKPTENLPSADIQLERKEAERAASGVKENCVVTPLMDFVRQKRAAKGGSQRNAS 1148
EFL+++AKP +NLPSA+IQLERKE E + KE V+TPLM FVRQKRAA+ G+Q +
Sbjct: 120 EFLKLIAKPVDNLPSAEIQLERKEVE-LSGAPKETPVITPLMAFVRQKRAAESGTQGPVT 178
Query: 1149 SAKLGRRAGANSI-VGPSVHXXXXXXXXXXXXXSSRIASGKEKSAYVVVSRPDEQAEP 1319
K+GR+AGA S S S + K+KS + V S+ ++Q P
Sbjct: 179 RRKIGRKAGAASTGKSGSSSKRGSEKKKYILKDSVKGTHHKDKSKFFVASKQEDQPVP 236
>gb|EOY26874.1| Smg-4/UPF3 family protein, putative isoform 5 [Theobroma cacao]
Length = 492
Score = 254 bits (650), Expect = 6e-65
Identities = 136/238 (57%), Positives = 168/238 (70%), Gaps = 1/238 (0%)
Frame = +3
Query: 609 MKDPNKDRTKVVVRHLPPGLSQSALKEQVDSRFAGRYDWFCFRPGKTSHRRQVYSRAYIE 788
MK+P + RTKVV+RHLPP ++QS L Q+D RF+ RY+WF FR GK+SH+ Q YSRAYI
Sbjct: 1 MKEPLR-RTKVVIRHLPPSVTQSFLFSQIDDRFSDRYNWFSFRLGKSSHKHQRYSRAYIN 59
Query: 789 FRRPEDVFEFSEAFGGHVFVNEKGTHYKAQVEYAPSQRVPKILNKKDSREGSIFKDSDYL 968
F+RPEDVFEF+E F GHVFVNEKGT +KA VEYAPSQRVPK KKD REG+IFKD DYL
Sbjct: 60 FKRPEDVFEFAEFFDGHVFVNEKGTQFKAIVEYAPSQRVPKPGTKKDGREGTIFKDPDYL 119
Query: 969 EFLEMLAKPTENLPSADIQLERKEAERAASGVKENCVVTPLMDFVRQKRAAKGGSQRNAS 1148
EFL+++AKP +NLPSA+IQLERKE E + KE V+TPLM FVRQKRAA+ G+Q +
Sbjct: 120 EFLKLIAKPVDNLPSAEIQLERKEVE-LSGAPKETPVITPLMAFVRQKRAAESGTQGPVT 178
Query: 1149 SAKLGRRAGANSI-VGPSVHXXXXXXXXXXXXXSSRIASGKEKSAYVVVSRPDEQAEP 1319
K+GR+AGA S S S + K+KS + V S+ ++Q P
Sbjct: 179 RRKIGRKAGAASTGKSGSSSKRGSEKKKYILKDSVKGTHHKDKSKFFVASKQEDQPVP 236
>gb|EOY26871.1| Smg-4/UPF3 family protein, putative isoform 2 [Theobroma cacao]
Length = 487
Score = 254 bits (650), Expect = 6e-65
Identities = 136/238 (57%), Positives = 168/238 (70%), Gaps = 1/238 (0%)
Frame = +3
Query: 609 MKDPNKDRTKVVVRHLPPGLSQSALKEQVDSRFAGRYDWFCFRPGKTSHRRQVYSRAYIE 788
MK+P + RTKVV+RHLPP ++QS L Q+D RF+ RY+WF FR GK+SH+ Q YSRAYI
Sbjct: 1 MKEPLR-RTKVVIRHLPPSVTQSFLFSQIDDRFSDRYNWFSFRLGKSSHKHQRYSRAYIN 59
Query: 789 FRRPEDVFEFSEAFGGHVFVNEKGTHYKAQVEYAPSQRVPKILNKKDSREGSIFKDSDYL 968
F+RPEDVFEF+E F GHVFVNEKGT +KA VEYAPSQRVPK KKD REG+IFKD DYL
Sbjct: 60 FKRPEDVFEFAEFFDGHVFVNEKGTQFKAIVEYAPSQRVPKPGTKKDGREGTIFKDPDYL 119
Query: 969 EFLEMLAKPTENLPSADIQLERKEAERAASGVKENCVVTPLMDFVRQKRAAKGGSQRNAS 1148
EFL+++AKP +NLPSA+IQLERKE E + KE V+TPLM FVRQKRAA+ G+Q +
Sbjct: 120 EFLKLIAKPVDNLPSAEIQLERKEVE-LSGAPKETPVITPLMAFVRQKRAAESGTQGPVT 178
Query: 1149 SAKLGRRAGANSI-VGPSVHXXXXXXXXXXXXXSSRIASGKEKSAYVVVSRPDEQAEP 1319
K+GR+AGA S S S + K+KS + V S+ ++Q P
Sbjct: 179 RRKIGRKAGAASTGKSGSSSKRGSEKKKYILKDSVKGTHHKDKSKFFVASKQEDQPVP 236
>gb|EOY26870.1| Smg-4/UPF3 family protein, putative isoform 1 [Theobroma cacao]
gi|508779616|gb|EOY26872.1| Smg-4/UPF3 family protein,
putative isoform 1 [Theobroma cacao]
gi|508779617|gb|EOY26873.1| Smg-4/UPF3 family protein,
putative isoform 1 [Theobroma cacao]
Length = 523
Score = 254 bits (650), Expect = 6e-65
Identities = 136/238 (57%), Positives = 168/238 (70%), Gaps = 1/238 (0%)
Frame = +3
Query: 609 MKDPNKDRTKVVVRHLPPGLSQSALKEQVDSRFAGRYDWFCFRPGKTSHRRQVYSRAYIE 788
MK+P + RTKVV+RHLPP ++QS L Q+D RF+ RY+WF FR GK+SH+ Q YSRAYI
Sbjct: 1 MKEPLR-RTKVVIRHLPPSVTQSFLFSQIDDRFSDRYNWFSFRLGKSSHKHQRYSRAYIN 59
Query: 789 FRRPEDVFEFSEAFGGHVFVNEKGTHYKAQVEYAPSQRVPKILNKKDSREGSIFKDSDYL 968
F+RPEDVFEF+E F GHVFVNEKGT +KA VEYAPSQRVPK KKD REG+IFKD DYL
Sbjct: 60 FKRPEDVFEFAEFFDGHVFVNEKGTQFKAIVEYAPSQRVPKPGTKKDGREGTIFKDPDYL 119
Query: 969 EFLEMLAKPTENLPSADIQLERKEAERAASGVKENCVVTPLMDFVRQKRAAKGGSQRNAS 1148
EFL+++AKP +NLPSA+IQLERKE E + KE V+TPLM FVRQKRAA+ G+Q +
Sbjct: 120 EFLKLIAKPVDNLPSAEIQLERKEVE-LSGAPKETPVITPLMAFVRQKRAAESGTQGPVT 178
Query: 1149 SAKLGRRAGANSI-VGPSVHXXXXXXXXXXXXXSSRIASGKEKSAYVVVSRPDEQAEP 1319
K+GR+AGA S S S + K+KS + V S+ ++Q P
Sbjct: 179 RRKIGRKAGAASTGKSGSSSKRGSEKKKYILKDSVKGTHHKDKSKFFVASKQEDQPVP 236