BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00002312
         (5323 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [A...  2736   0.0  
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su...  2712   0.0  
ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II su...  2686   0.0  
ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II su...  2674   0.0  
ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II su...  2672   0.0  
ref|XP_006425357.1| hypothetical protein CICLE_v10024686mg [Citr...  2670   0.0  
ref|XP_004972809.1| PREDICTED: DNA-directed RNA polymerase II su...  2670   0.0  
ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II su...  2669   0.0  
ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II su...  2669   0.0  
ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II su...  2669   0.0  
ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II su...  2669   0.0  
ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II su...  2669   0.0  
ref|XP_004972810.1| PREDICTED: DNA-directed RNA polymerase II su...  2668   0.0  
ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II su...  2668   0.0  
ref|XP_002530639.1| DNA-directed RNA polymerase II largest subun...  2667   0.0  
gb|ESW29856.1| hypothetical protein PHAVU_002G104500g [Phaseolus...  2666   0.0  
ref|XP_004512182.1| PREDICTED: DNA-directed RNA polymerase II su...  2664   0.0  
gb|EMJ04257.1| hypothetical protein PRUPE_ppa000093mg [Prunus pe...  2662   0.0  
ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II su...  2662   0.0  
ref|XP_006383037.1| DNA-directed RNA polymerase II largest subun...  2661   0.0  

>ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [Amborella trichopoda]
            gi|548833823|gb|ERM96260.1| hypothetical protein
            AMTR_s00001p00152770 [Amborella trichopoda]
          Length = 1844

 Score = 2736 bits (7091), Expect = 0.0
 Identities = 1333/1538 (86%), Positives = 1449/1538 (94%), Gaps = 1/1538 (0%)
 Frame = +3

Query: 213  MDTRFPFSPAEVAKVKMVQFGIISPDEIRQMSVAQIEHSEIYDNGKPRTGGLSDPRLGTI 392
            MD RFP+SPAEVAKV++VQFGI+SP+EIR MSV +I+HSE  + GKP+  GLSDPRLGTI
Sbjct: 1    MDMRFPYSPAEVAKVRVVQFGILSPEEIRNMSVVEIQHSETMERGKPKPSGLSDPRLGTI 60

Query: 393  DRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRILADEEDHR 572
            DRK+KC++C A MAECPGHFGHLELAKPM+HIGFLKTVLSI+RCVCFNCSRILADEEDHR
Sbjct: 61   DRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSRILADEEDHR 120

Query: 573  FKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXXVKKKPHGGCGSQQPKI 752
            FKQA+K++NPK RLK+VLDCCKNKTKCEGGD I           VKKK HGGCG+QQPKI
Sbjct: 121  FKQALKIRNPKTRLKKVLDCCKNKTKCEGGDDIDEDQAQDSEEVVKKKRHGGCGAQQPKI 180

Query: 753  TIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQMLGFDPQ 932
            TI+GMK++AEY+ PRKK DEQ+Q++PEPVERKQQL AE+VLN+LKRI+DE+CQ+LG +P+
Sbjct: 181  TIEGMKMVAEYKLPRKKNDEQEQMLPEPVERKQQLAAEKVLNVLKRITDEDCQLLGLNPK 240

Query: 933  FARPDWMILQVLXXXXXXXXXSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQEKNGAPAH 1112
            +ARPDWMILQV+         SVMM+++SRSEDDLTHQLAM+IRHNE LK+QEKNGAPAH
Sbjct: 241  YARPDWMILQVMPIPPPPVRPSVMMDTSSRSEDDLTHQLAMVIRHNENLKRQEKNGAPAH 300

Query: 1113 IVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 1292
            I++EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF
Sbjct: 301  IISEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 360

Query: 1293 SARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPPGKTGAKY 1472
            SARTVITPDP INID+LGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPPGKTGAKY
Sbjct: 361  SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 420

Query: 1473 IIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 1652
            IIR+DGQRLDLRYLK+S DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP
Sbjct: 421  IIREDGQRLDLRYLKKSGDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 480

Query: 1653 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV 1832
            YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIV
Sbjct: 481  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 540

Query: 1833 QDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQVFNLIIPK 2012
            QDTLLGCRKITKRDTFIEKDVFMNILMWWE+FDGKIPAP I KPRP+WTGKQVFNLIIPK
Sbjct: 541  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPK 600

Query: 2013 QINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHVIWEEVGP 2192
            QINLIRYSAWH+ESE GF+T GDT VRIE+GE+L GTLCKKTLG+SSGSLIHVIWEEVGP
Sbjct: 601  QINLIRYSAWHSESESGFITPGDTCVRIERGELLSGTLCKKTLGTSSGSLIHVIWEEVGP 660

Query: 2193 DAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQLIEKAQE 2372
            DAARKFLGHTQWLVNYWLLQQ FS+GIGDTIADAATMEKINETIS AK +V++LI+ AQE
Sbjct: 661  DAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADAATMEKINETISKAKNEVKELIKAAQE 720

Query: 2373 KKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINIS 2552
            K+LEAEPGRTMMESFEN+VNQVLNKARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINIS
Sbjct: 721  KQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 780

Query: 2553 QMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMG 2732
            QMTACVGQQNVEGKRIP+GFN RTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMG
Sbjct: 781  QMTACVGQQNVEGKRIPFGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 840

Query: 2733 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 2912
            GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE
Sbjct: 841  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 900

Query: 2913 SQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAEVQKLEAD 3092
            SQKLDSLKMKR EF++ YKYE DQ++WSP+YMLP ++EDLK+IREFQNVF+AEVQKLEAD
Sbjct: 901  SQKLDSLKMKRAEFENVYKYEIDQENWSPSYMLPEHVEDLKTIREFQNVFDAEVQKLEAD 960

Query: 3093 RRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAIDKLQERLR 3272
            R QLG EI  +GDNSWP+PVNLKRLIWN QK+FK+D RRPSDMHPMEIVEA+DKLQERL+
Sbjct: 961  RHQLGTEITTTGDNSWPMPVNLKRLIWNAQKMFKVDLRRPSDMHPMEIVEAVDKLQERLK 1020

Query: 3273 VVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEARFLQSLV 3452
            VVPGDD +S EAQKNATLFFNILLRST ASKRVLKEY LT+EAF+W++GEIE+RFLQSLV
Sbjct: 1021 VVPGDDLMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLV 1080

Query: 3453 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 3632
            APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV
Sbjct: 1081 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1140

Query: 3633 YLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYYEMPD 3812
            YLK EV KTKE+AKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFV+SYYEMPD
Sbjct: 1141 YLKHEVNKTKEKAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVRSYYEMPD 1200

Query: 3813 EDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKLILRI 3992
            E+++P++ISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD+TCIFNDDNAEKLILRI
Sbjct: 1201 EEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRI 1260

Query: 3993 RIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFDENEG 4172
            RIMND+APKGE++D + EDD FLK+IESNMLT+M+LRGIPDINKVFIKS KINKFDENEG
Sbjct: 1261 RIMNDEAPKGELQDESSEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINKFDENEG 1320

Query: 4173 FTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELRVVIS 4352
            F P  EWMLDTEGVN+LAVMC+E+VDA+RTTSNHLIEVI+VLGIEAVR+ALLDELRVVIS
Sbjct: 1321 FKPEIEWMLDTEGVNLLAVMCNEEVDATRTTSNHLIEVIQVLGIEAVRRALLDELRVVIS 1380

Query: 4353 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAMFAE 4532
            FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA++AE
Sbjct: 1381 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE 1440

Query: 4533 SDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSMSPVL 4712
            +D+LRGVTENIMLGQLAPIGTG C+LYL+D+MLQQAIELQLPSYMEG+DF M+PS SP+ 
Sbjct: 1441 ADHLRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYMEGMDFGMTPSRSPMT 1500

Query: 4713 -SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 4823
             +P H+ MMSP YL SPNM SSPI DAQFSPYVGGMAF
Sbjct: 1501 GTPYHEGMMSP-YLLSPNMRSSPITDAQFSPYVGGMAF 1537


>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
            vinifera]
          Length = 1848

 Score = 2712 bits (7030), Expect = 0.0
 Identities = 1325/1538 (86%), Positives = 1440/1538 (93%), Gaps = 1/1538 (0%)
 Frame = +3

Query: 213  MDTRFPFSPAEVAKVKMVQFGIISPDEIRQMSVAQIEHSEIYDNGKPRTGGLSDPRLGTI 392
            MD RFP+SPAEVAKV+MVQFGI+SPDEIRQMSV QIEHSE  + GKP+ GGLSDPRLGTI
Sbjct: 1    MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60

Query: 393  DRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRILADEEDHR 572
            DRK+KCE+C A MAECPGHFGHLELAKPM+HIGF+KTVLSI+RCVCFNCS+ILADEEDH+
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 573  FKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXXVKKKPHGGCGSQQPKI 752
            FKQA K++NPK+RLK++LD CKNK+KCEGGD I             KK  GGCG+QQPK+
Sbjct: 121  FKQAQKIRNPKNRLKKILDACKNKSKCEGGDEIETQALDSDEPV--KKSRGGCGAQQPKL 178

Query: 753  TIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQMLGFDPQ 932
            TI+GMK+IAEY+  RKK D+ +QL PEPVERKQQL+AERVLN+LKRISDE+C +LG +P+
Sbjct: 179  TIEGMKMIAEYKIQRKKNDDPEQL-PEPVERKQQLSAERVLNVLKRISDEDCILLGLNPK 237

Query: 933  FARPDWMILQVLXXXXXXXXXSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQEKNGAPAH 1112
            +ARPDWMILQVL         SVMM+++SRSEDDLTHQLAMIIRHNE L++QE+NGAPAH
Sbjct: 238  YARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAH 297

Query: 1113 IVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 1292
            I++EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF
Sbjct: 298  IISEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 357

Query: 1293 SARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPPGKTGAKY 1472
            SARTVITPDP INID+LGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPPGKTGAKY
Sbjct: 358  SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 417

Query: 1473 IIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 1652
            IIR+DGQRLDLRYLK+SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP
Sbjct: 418  IIREDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 477

Query: 1653 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV 1832
            YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIV
Sbjct: 478  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 537

Query: 1833 QDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQVFNLIIPK 2012
            QDTLLGCRKITKRDTFIEKDVFMNILMWWE+FDGKIPAP I KPRP+WTGKQVFNLIIPK
Sbjct: 538  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPK 597

Query: 2013 QINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHVIWEEVGP 2192
            QINL+R SAWH+ESE GF+T GDTQVRIEKGE+L GTLCKKTLG+S+GSLIHVIWEEVGP
Sbjct: 598  QINLLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGP 657

Query: 2193 DAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQLIEKAQE 2372
            DAARKFLGHTQWLVNYWLLQ GFS+GIGDTIADAATMEKINETIS AK +V++LI  AQE
Sbjct: 658  DAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQE 717

Query: 2373 KKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINIS 2552
            ++LEAEPGRTMMESFEN+VNQVLNKARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINIS
Sbjct: 718  RQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 777

Query: 2553 QMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMG 2732
            QMTACVGQQNVEGKRIPYGF  RTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMG
Sbjct: 778  QMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 837

Query: 2733 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 2912
            GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE
Sbjct: 838  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 897

Query: 2913 SQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAEVQKLEAD 3092
            +QKLDSLKMK+ EFD  +KYE D ++W+P+YMLP ++EDLK+IREF+NVF+AEVQKLEAD
Sbjct: 898  TQKLDSLKMKKGEFDRVFKYEIDDENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEAD 957

Query: 3093 RRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAIDKLQERLR 3272
            R QLG EIA +GDNSWP+PVNLKRLIWN QK FK+D RRPSDMHPMEIVEA+DKLQERL+
Sbjct: 958  RFQLGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLK 1017

Query: 3273 VVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEARFLQSLV 3452
            VVPGDD +S EAQKNATLFFNILLRST ASKRVLKEY LT+EAFEW++GEIE+RFLQSLV
Sbjct: 1018 VVPGDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLV 1077

Query: 3453 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 3632
            APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV
Sbjct: 1078 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1137

Query: 3633 YLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYYEMPD 3812
            YLKP+V KTKERAKNVQCALEYTTLRSVT+ATEVWYDPDPMSTIIEEDVDFVKSYYEMPD
Sbjct: 1138 YLKPDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPD 1197

Query: 3813 EDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKLILRI 3992
            E+++P++ISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD+TCIFNDDNAEKLILRI
Sbjct: 1198 EEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRI 1257

Query: 3993 RIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFDENEG 4172
            RIMND+APKGE++D + EDD FLK+IESNMLT+M+LRGIPDINKVFIKS K+NKFDE+EG
Sbjct: 1258 RIMNDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDESEG 1317

Query: 4173 FTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELRVVIS 4352
            F P  EWMLDTEGVN+LAVMCHEDVDA RTTSNHLIEVIEVLGIEAVR++LLDELRVVIS
Sbjct: 1318 FKPEVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVIS 1377

Query: 4353 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAMFAE 4532
            FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA++AE
Sbjct: 1378 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE 1437

Query: 4533 SDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSMSPVL 4712
            +D+LRGVTENIMLGQLAPIGTG C+LYL+D+MLQ AIELQLPSYMEG+DF M+PS SP+ 
Sbjct: 1438 TDFLRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYMEGLDFGMTPSRSPIT 1497

Query: 4713 -SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 4823
             +P HD MMSP+YL SPN+  SPI DAQFSPYVGGMAF
Sbjct: 1498 GTPYHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAF 1535


>ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Oryza
            brachyantha]
          Length = 1855

 Score = 2686 bits (6963), Expect = 0.0
 Identities = 1306/1538 (84%), Positives = 1433/1538 (93%), Gaps = 1/1538 (0%)
 Frame = +3

Query: 213  MDTRFPFSPAEVAKVKMVQFGIISPDEIRQMSVAQIEHSEIYDNGKPRTGGLSDPRLGTI 392
            MD RFP+SPAEVAKV++VQFGI+SPDEIRQMSV QIEH+E  + GKP+ GGLSDPRLGTI
Sbjct: 1    MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVVQIEHAETMERGKPKPGGLSDPRLGTI 60

Query: 393  DRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRILADEEDHR 572
            DRK+KCE+C AGMAECPGHFGHLELAKPM+HIGF+KTVLSI+RCVCFNCS+ILADE+D +
Sbjct: 61   DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTK 120

Query: 573  FKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXXVKKKPHGGCGSQQPKI 752
            FKQA+K++NPK+RLKR+ D CK+K  C GGD +           VK++  GGCG+QQP I
Sbjct: 121  FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQQDTDEPVKRR--GGCGAQQPNI 178

Query: 753  TIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQMLGFDPQ 932
            T+DGMK++AE++AP+KK D+Q+QL PEPVERKQ L+AERVLN+LKRISDE+C +LG +P+
Sbjct: 179  TVDGMKMVAEFKAPKKKNDDQEQL-PEPVERKQILSAERVLNVLKRISDEDCLLLGLNPK 237

Query: 933  FARPDWMILQVLXXXXXXXXXSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQEKNGAPAH 1112
            FARPDWMILQVL         SVMM+++SRSEDDLTHQLAMIIRHNE L++QE+NGAPAH
Sbjct: 238  FARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAH 297

Query: 1113 IVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 1292
            I+TEFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF
Sbjct: 298  IITEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 357

Query: 1293 SARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPPGKTGAKY 1472
            SARTVITPDPNINID+LGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPPGKTGAKY
Sbjct: 358  SARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 417

Query: 1473 IIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 1652
            IIR+DGQRLDLRY+K+SSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP
Sbjct: 418  IIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 477

Query: 1653 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV 1832
            YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIV
Sbjct: 478  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 537

Query: 1833 QDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQVFNLIIPK 2012
            QDTLLGCRKITKRDT IEKDVFMNILMWWE+FDGK+PAP I KPRPIWTGKQVFNLIIPK
Sbjct: 538  QDTLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPK 597

Query: 2013 QINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHVIWEEVGP 2192
             INLIR+SAWH+E+E GF+T GDT VRIEKGE+L GTLCKKTLG+S+GSLIHVIWEEVGP
Sbjct: 598  PINLIRFSAWHSEAETGFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 657

Query: 2193 DAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQLIEKAQE 2372
            DAARKFLGHTQWLVNYWLLQ GFS+GIGDTIADAATMEKINETIS AK +V++LI++A +
Sbjct: 658  DAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISTAKNEVKELIKQAHD 717

Query: 2373 KKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINIS 2552
            K LEAEPGRTMMESFEN+VNQVLNKARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINIS
Sbjct: 718  KHLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 777

Query: 2553 QMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMG 2732
            QMTACVGQQNVEGKRIP+GF  RTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMG
Sbjct: 778  QMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 837

Query: 2733 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 2912
            GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE
Sbjct: 838  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 897

Query: 2913 SQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAEVQKLEAD 3092
            SQKLDSLKMK+ EFD  ++YE D ++W PNYMLP ++EDLK+IREF+NVF AEVQKLEAD
Sbjct: 898  SQKLDSLKMKKGEFDTVFRYELDDENWRPNYMLPEHVEDLKTIREFRNVFEAEVQKLEAD 957

Query: 3093 RRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAIDKLQERLR 3272
            R QLG EIA +GDN+WP+PVNLKRLIWN QK FKID RRPSDMHPMEIVEAIDKLQERL+
Sbjct: 958  RFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLK 1017

Query: 3273 VVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEARFLQSLV 3452
            VVPGDD +S EAQKNATLFFNILLRST ASKRVLKEY LTKEAFEW++GEIE+RFLQSLV
Sbjct: 1018 VVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLV 1077

Query: 3453 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 3632
            APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV
Sbjct: 1078 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1137

Query: 3633 YLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYYEMPD 3812
            YLKPEV K KE AKNVQCALEYTTLRSVT ATE+WYDPDP+ TIIEEDV+FV+SYYEMPD
Sbjct: 1138 YLKPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPD 1197

Query: 3813 EDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKLILRI 3992
            ED+ PD+ISPWLLRIELNREMMVDKKLSMADIAEKINHEF DD++CIFNDDNA+KLILR+
Sbjct: 1198 EDVDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRV 1257

Query: 3993 RIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFDENEG 4172
            RI ND+APKGE++D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK  K+NKF++N+G
Sbjct: 1258 RITNDEAPKGEIQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKYGKVNKFEDNDG 1317

Query: 4173 FTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELRVVIS 4352
            F P  EWMLDTEGVN+LAVMCHEDVDA+RTTSNHLIEVIEVLGIEAVR+ALLDELRVVIS
Sbjct: 1318 FKPDNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVIS 1377

Query: 4353 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAMFAE 4532
            FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAA++AE
Sbjct: 1378 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAE 1437

Query: 4533 SDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSMSPVL 4712
            SDYLRGVTENIMLGQLAPIGTG C+LYL+D+MLQQAIELQLPSY+EG+DF M+P+ SP+ 
Sbjct: 1438 SDYLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTPARSPIS 1497

Query: 4713 -SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 4823
             +P H+ MMSPSYL SPN+ +SPI DAQFSPYVGGMAF
Sbjct: 1498 GTPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 1535


>ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Fragaria
            vesca subsp. vesca]
          Length = 1842

 Score = 2674 bits (6930), Expect = 0.0
 Identities = 1307/1538 (84%), Positives = 1425/1538 (92%), Gaps = 1/1538 (0%)
 Frame = +3

Query: 213  MDTRFPFSPAEVAKVKMVQFGIISPDEIRQMSVAQIEHSEIYDNGKPRTGGLSDPRLGTI 392
            MD RFPFSP EVAKV+ VQFGI+SPDEIRQMSV QIEHSE    GKP+T GLSDPRLGTI
Sbjct: 1    MDIRFPFSPCEVAKVRRVQFGILSPDEIRQMSVVQIEHSETMLGGKPKTAGLSDPRLGTI 60

Query: 393  DRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRILADEEDHR 572
            DRK+KCE+C A MAECPGHFGHLELAKPM+HIGF+KTVLSI+RCVCFNCS+IL DE+DH+
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILVDEDDHK 120

Query: 573  FKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXXVKKKPHGGCGSQQPKI 752
            FK A+++KNPK+RLK++LD CKNKTKCEGGD I             KK  GGCG+QQPK+
Sbjct: 121  FKTALRIKNPKNRLKKILDACKNKTKCEGGDEIDVQDTDEPL----KKSRGGCGAQQPKL 176

Query: 753  TIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQMLGFDPQ 932
            TIDGMK++AEY+A RKK+D+Q+QL PEPVERKQ LTAERVL++LKRISDE+CQ+LG +P+
Sbjct: 177  TIDGMKMVAEYKAQRKKSDDQEQL-PEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPK 235

Query: 933  FARPDWMILQVLXXXXXXXXXSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQEKNGAPAH 1112
            +ARPDWMILQVL         SVMM+++SRSEDDLTHQLAMIIRHNE L++QE+NG+PAH
Sbjct: 236  YARPDWMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAH 295

Query: 1113 IVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 1292
            I++EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF
Sbjct: 296  IISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 355

Query: 1293 SARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPPGKTGAKY 1472
            SARTVITPDPNINIDQLGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPPGKTGAKY
Sbjct: 356  SARTVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 415

Query: 1473 IIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 1652
            IIRDDGQRLDLRYLK+SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP
Sbjct: 416  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 475

Query: 1653 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV 1832
            YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIV
Sbjct: 476  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 535

Query: 1833 QDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQVFNLIIPK 2012
            QDTLLGCRKITKRDTFIEKDVFMNILMWWE+FDGK+PAP I KPRP+WTGKQVFNLIIPK
Sbjct: 536  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPK 595

Query: 2013 QINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHVIWEEVGP 2192
            QINL R SAWH+ESE G +T GDT VRIEKGE+L GTLCKK LG+S+GSLIHVIWEEVGP
Sbjct: 596  QINLQRTSAWHSESETGNITPGDTHVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGP 655

Query: 2193 DAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQLIEKAQE 2372
            DAARKFLGHTQWLVNYWLLQ  FS+GIGDTIADAATMEKINETIS AK +V++LI KAQ 
Sbjct: 656  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNEVKELISKAQS 715

Query: 2373 KKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINIS 2552
            K LE EPGRTMM+SFEN+VNQVLN+ARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINIS
Sbjct: 716  KSLEPEPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 775

Query: 2553 QMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMG 2732
            QMTACVGQQNVEGKRIPYGF  RTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMG
Sbjct: 776  QMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 835

Query: 2733 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 2912
            GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE
Sbjct: 836  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 895

Query: 2913 SQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAEVQKLEAD 3092
            SQKLDSLKMK+KEFD T+ Y FD ++W+P+YMLP ++EDLK+IREF+NVF+AEV KLE D
Sbjct: 896  SQKLDSLKMKKKEFDKTFAYVFDDENWNPDYMLPEHVEDLKTIREFRNVFDAEVSKLETD 955

Query: 3093 RRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAIDKLQERLR 3272
            R QLG EIA +GDNSWPLPVNLKRLIWN QK FKID RR SDMHPMEIVEAIDKLQERLR
Sbjct: 956  RLQLGTEIAVTGDNSWPLPVNLKRLIWNAQKTFKIDFRRTSDMHPMEIVEAIDKLQERLR 1015

Query: 3273 VVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEARFLQSLV 3452
            VVPGDD LS EAQKNATLFFNILLRST ASKRVL+EY LT+EAFEW++GEIE+RFLQSLV
Sbjct: 1016 VVPGDDLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESRFLQSLV 1075

Query: 3453 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 3632
            APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSV
Sbjct: 1076 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSV 1135

Query: 3633 YLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYYEMPD 3812
            YLKPE  KTKERAKNVQCALEYTTLRSVT+ATEVWYDPDPMST+IEED+DFV+SYYEMPD
Sbjct: 1136 YLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDLDFVRSYYEMPD 1195

Query: 3813 EDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKLILRI 3992
            E+++PD+ISPWLLRIELNREMMVDKKLSMADIAEKIN EF  D+TCIFNDDNAEKLILRI
Sbjct: 1196 EEVNPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDGDLTCIFNDDNAEKLILRI 1255

Query: 3993 RIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFDENEG 4172
            RIMN++ PKG+ +D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK  K+NKFD+NEG
Sbjct: 1256 RIMNEETPKGDSQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNKFDQNEG 1315

Query: 4173 FTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELRVVIS 4352
            F   QEWMLDTEGVN+LAV+CH+DVDA RTTSNHLIE+IEVLGIEAVR++LLDELRVVIS
Sbjct: 1316 FKAEQEWMLDTEGVNLLAVLCHDDVDAKRTTSNHLIEIIEVLGIEAVRRSLLDELRVVIS 1375

Query: 4353 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAMFAE 4532
            FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA++FAE
Sbjct: 1376 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDASVFAE 1435

Query: 4533 SDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSMSPVL 4712
            +D+LRGVTENIMLGQLAPIGTG C+LYL+D+ML+ AIELQLPSY++G+DF M+PS SPV 
Sbjct: 1436 TDHLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYVDGLDFGMTPSRSPVS 1495

Query: 4713 -SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 4823
             +P  D MMSP+YL SPNM  SPI+DAQFSPYVGGMAF
Sbjct: 1496 GTPFRDGMMSPNYLLSPNMRMSPISDAQFSPYVGGMAF 1533


>ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Glycine
            max]
          Length = 1827

 Score = 2672 bits (6926), Expect = 0.0
 Identities = 1306/1538 (84%), Positives = 1429/1538 (92%), Gaps = 1/1538 (0%)
 Frame = +3

Query: 213  MDTRFPFSPAEVAKVKMVQFGIISPDEIRQMSVAQIEHSEIYDNGKPRTGGLSDPRLGTI 392
            MD RFPFSPAEVAKV+MVQFGI+SPDEIRQMSV QIEH E  + GKP+ GGLSDPRLGTI
Sbjct: 1    MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60

Query: 393  DRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRILADEEDHR 572
            DRKLKCE+C A MAECPGHFGHLELAKPM+HIGFLKTVL+I+RCVCFNCS+ILADE DH+
Sbjct: 61   DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120

Query: 573  FKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXXVKKKPHGGCGSQQPKI 752
            FKQA++++NPK+RLK++LD CKNK+KCEGGD I             KK  GGCG+QQPKI
Sbjct: 121  FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTDEPV--KKSRGGCGAQQPKI 178

Query: 753  TIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQMLGFDPQ 932
            TI+GMK+IAEY+A RKK+D+Q+QL PEPVERKQ L+AERVL +LKRISDE+CQ+LG +P+
Sbjct: 179  TIEGMKMIAEYKAQRKKSDDQEQL-PEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPK 237

Query: 933  FARPDWMILQVLXXXXXXXXXSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQEKNGAPAH 1112
            +ARPDWMILQVL         SVMM+++SRSEDDLTHQLAMIIRHNE LK+QE+NG+PAH
Sbjct: 238  YARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAH 297

Query: 1113 IVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 1292
            I++EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF
Sbjct: 298  IISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 357

Query: 1293 SARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPPGKTGAKY 1472
            SARTVITPDP INIDQLGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPPGKTGAKY
Sbjct: 358  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 417

Query: 1473 IIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 1652
            IIRDDGQRLDLRYLK+SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP
Sbjct: 418  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 477

Query: 1653 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV 1832
            YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIV
Sbjct: 478  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 537

Query: 1833 QDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQVFNLIIPK 2012
            QDTLLGCRKITKRDTFI KDVFMNILMWWE+FDGK+PAP I KP P+WTGKQVFNLIIPK
Sbjct: 538  QDTLLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPK 597

Query: 2013 QINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHVIWEEVGP 2192
            QINLIRYS+WH+ESE+G +T GDT VRIEKGE+L GTLCKKTLG+S+GSLIHVIWEEVGP
Sbjct: 598  QINLIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGP 657

Query: 2193 DAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQLIEKAQE 2372
            DAARKFLGHTQWLVNYWLLQ  FS+GIGDTIADA+TME IN+TIS AK KV+QLI +AQE
Sbjct: 658  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAQE 717

Query: 2373 KKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINIS 2552
            KKLEAEPGRTMM+SFEN+VNQ LN+ARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINIS
Sbjct: 718  KKLEAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINIS 777

Query: 2553 QMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMG 2732
            QMTACVGQQNVEGKRIPYGF  RTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMG
Sbjct: 778  QMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 837

Query: 2733 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 2912
            GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE
Sbjct: 838  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 897

Query: 2913 SQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAEVQKLEAD 3092
            +QKLDSLKMK+ EFD  ++YEFD ++W P YML   +EDLK+IREF+NVF AEVQKLEAD
Sbjct: 898  TQKLDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEAD 957

Query: 3093 RRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAIDKLQERLR 3272
            R QL  EIA +GD+S PLPVNLKRLIWN QK FK+D RRPSDMHPMEIVEAIDKLQERL+
Sbjct: 958  RYQLATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLK 1017

Query: 3273 VVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEARFLQSLV 3452
            VVPG+D LSQEAQKNATL FNILLRST ASKRVL+EY L++EAFEW+VGEIE+RFLQSLV
Sbjct: 1018 VVPGEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLV 1077

Query: 3453 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 3632
            A GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSV
Sbjct: 1078 ASGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSV 1137

Query: 3633 YLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYYEMPD 3812
            YL+ +VGKTKERAK+VQCALEYTTLRSVT+ATEVWYDPDPMSTIIEED DFVKSYYEMPD
Sbjct: 1138 YLRSDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDADFVKSYYEMPD 1197

Query: 3813 EDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKLILRI 3992
            E+++ ++ISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD+TCIFNDDNAEKLILRI
Sbjct: 1198 EEVALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRI 1257

Query: 3993 RIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFDENEG 4172
            RIMND+APKGE++D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK+ K+ KFDEN+G
Sbjct: 1258 RIMNDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENQG 1317

Query: 4173 FTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELRVVIS 4352
            F P++EWMLDTEGVN+LAVMCHEDVDA+RTTSNHLIEVIEVLGIEAVR+ALLDELRVVIS
Sbjct: 1318 FKPNEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVIS 1377

Query: 4353 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAMFAE 4532
            FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA++AE
Sbjct: 1378 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE 1437

Query: 4533 SDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSMSPVL 4712
            +DYLRGVTENIMLGQLAPIGTG C+LYL+D+ML+ AIELQLPSYM+G+DF M+P+ SP+ 
Sbjct: 1438 TDYLRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPARSPIS 1497

Query: 4713 -SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 4823
             +P H+ +MSPSYL SPN+  SP +DAQFSPYVGGMAF
Sbjct: 1498 GTPYHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAF 1535


>ref|XP_006425357.1| hypothetical protein CICLE_v10024686mg [Citrus clementina]
            gi|557527347|gb|ESR38597.1| hypothetical protein
            CICLE_v10024686mg [Citrus clementina]
          Length = 1860

 Score = 2670 bits (6922), Expect = 0.0
 Identities = 1303/1538 (84%), Positives = 1422/1538 (92%), Gaps = 1/1538 (0%)
 Frame = +3

Query: 213  MDTRFPFSPAEVAKVKMVQFGIISPDEIRQMSVAQIEHSEIYDNGKPRTGGLSDPRLGTI 392
            MDTRFP+SPAEVAKV+MVQFGI+SPDEIRQMSV QIEH E  + GKP+ GGLSDPRLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 393  DRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRILADEEDHR 572
            DRK+KCE+C A MAECPGHFGHLELAKPM+HIGF+KTVLSI+R VCFNCS+ILADE+DH+
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 573  FKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXXVKKKPHGGCGSQQPKI 752
            FKQA+K++NPK+RLK++LD CKNKTKCEGGD I            KKK  GGCG+QQPK+
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKKK--GGCGAQQPKL 178

Query: 753  TIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQMLGFDPQ 932
            TI+GMK+IAEY+A RKK D+Q+QL PEPVERKQ LTAERVL +LKRISDE+CQ+LG +P+
Sbjct: 179  TIEGMKMIAEYKAQRKKNDDQEQL-PEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237

Query: 933  FARPDWMILQVLXXXXXXXXXSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQEKNGAPAH 1112
            +ARPDWMILQVL         SVMM+++SRSEDDLTHQLAMIIRHNE L++QE+NGAPAH
Sbjct: 238  YARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAH 297

Query: 1113 IVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 1292
            I++EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF
Sbjct: 298  IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 357

Query: 1293 SARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPPGKTGAKY 1472
            SARTVITPDP INIDQLGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPPGKTGAKY
Sbjct: 358  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 417

Query: 1473 IIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 1652
            IIRDDGQRLDLRYLK+SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP
Sbjct: 418  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 477

Query: 1653 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV 1832
            YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIV
Sbjct: 478  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 537

Query: 1833 QDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQVFNLIIPK 2012
            QDTLLGCRKITKRDTFIEKDVFMNILMWWE+FDGK+P PTI KPRP+WTGKQVFNLIIPK
Sbjct: 538  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 597

Query: 2013 QINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHVIWEEVGP 2192
            QINL R +AWH +++KG LT GDT VRIEKGE+L GTLCKKTLG+S+GSLIHVIWEEVGP
Sbjct: 598  QINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 657

Query: 2193 DAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQLIEKAQE 2372
            DAARKFLGHTQWLVNYWLLQ  FS+GIGDTIADA TME IN+TIS AK  V+ LI++AQ+
Sbjct: 658  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 717

Query: 2373 KKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINIS 2552
            K LE EPGRTMMESFEN+VNQVLN ARD+AG+SAQKSLSESNNLKAMVTAGSKGSFINIS
Sbjct: 718  KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 777

Query: 2553 QMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMG 2732
            QMTACVGQQNVEGKRIP+GF  RTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMG
Sbjct: 778  QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 837

Query: 2733 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 2912
            GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE
Sbjct: 838  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 897

Query: 2913 SQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAEVQKLEAD 3092
            SQ LDSLKMK+ EFD  +++E D+++W+PNYML  YI+DLK+I+E ++VF+AEVQKLEAD
Sbjct: 898  SQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEAD 957

Query: 3093 RRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAIDKLQERLR 3272
            R QL  EIA SGD+SWPLPVNLKRLIWN QK FK+DPRRPSDMHPME+VEA+DKLQERL+
Sbjct: 958  RYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLK 1017

Query: 3273 VVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEARFLQSLV 3452
            VVPG+D LS EAQKNATLFFNILLRST ASKRVLKE+ LT+EAFEW++GEIE+RFLQSLV
Sbjct: 1018 VVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1077

Query: 3453 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 3632
            APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV
Sbjct: 1078 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1137

Query: 3633 YLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYYEMPD 3812
            +LKP V  TKERAKNVQCALEYTTLRSVTEATEVWYDPDPM TIIEEDV+FVKSYYEMPD
Sbjct: 1138 FLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPD 1197

Query: 3813 EDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKLILRI 3992
            EDI+P++ISPWLLRIELNREMMVDKKLSMA +AEKIN EF DD+TCIFNDDNA+KLILRI
Sbjct: 1198 EDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRI 1257

Query: 3993 RIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFDENEG 4172
            RIMND+APKGE+ D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK  K  K+D+NEG
Sbjct: 1258 RIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEG 1317

Query: 4173 FTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELRVVIS 4352
            F    EWMLDTEGVN+LAVMCHEDVDA RTTSNHLIE+IEVLGIEAVR+ALLDELRVVIS
Sbjct: 1318 FKSEDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVIS 1377

Query: 4353 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAMFAE 4532
            FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA+FAE
Sbjct: 1378 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE 1437

Query: 4533 SDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSMSPVL 4712
            SDYLRGVTENIMLGQLAPIGTG CSLYL+D+ML+ AIELQLPSYMEG++F M+P+ SPV 
Sbjct: 1438 SDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVS 1497

Query: 4713 -SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 4823
             +P HD MMSP YLFSPN+  SP+ DAQFSPYVGGMAF
Sbjct: 1498 GTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535


>ref|XP_004972809.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
            X1 [Setaria italica]
          Length = 1852

 Score = 2670 bits (6921), Expect = 0.0
 Identities = 1303/1539 (84%), Positives = 1428/1539 (92%), Gaps = 2/1539 (0%)
 Frame = +3

Query: 213  MDTRFPFSPAEVAKVKMVQFGIISPDEIRQMSVAQIEHSEIYDNGKPRTGGLSDPRLGTI 392
            MD RFP+SPAEVAKV++VQFGI+SPDEIRQMSV QIEH+E  + GKP+ GGLSDPRLGTI
Sbjct: 1    MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVIQIEHAETMERGKPKPGGLSDPRLGTI 60

Query: 393  DRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRILADEEDHR 572
            DRK+KCE+C AGMAECPGHFGHLELAKPM+HIGF+KTVLSI+RCVCFNCS+ILADE+D +
Sbjct: 61   DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTK 120

Query: 573  FKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXXVKKKPHGGCGSQQPKI 752
            FKQA+K++NPK+RLKR+ D CK+K  C GGD +           VKK+  GGCG+QQP I
Sbjct: 121  FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQQDTDEPVKKR--GGCGAQQPNI 178

Query: 753  TIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQMLGFDPQ 932
            T+DGMK++AE++AP+KK D+QDQL PEPVERKQ L+AERVLN+LKRISDE+C +LG +P+
Sbjct: 179  TVDGMKMVAEFKAPKKKTDDQDQL-PEPVERKQILSAERVLNVLKRISDEDCLLLGLNPK 237

Query: 933  FARPDWMILQVLXXXXXXXXXSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQEKNGAPAH 1112
            FARPDWMILQVL         SVMM+++SRSEDDLTHQLAMIIRHNE L++QE+NGAPAH
Sbjct: 238  FARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAH 297

Query: 1113 IVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 1292
            I+TEFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF
Sbjct: 298  IITEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 357

Query: 1293 SARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPPGKTGAKY 1472
            SARTVITPDPNINID+LGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPPGKTGAKY
Sbjct: 358  SARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 417

Query: 1473 IIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 1652
            IIR+DGQRLDLRY+K+SSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP
Sbjct: 418  IIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 477

Query: 1653 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV 1832
            YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIV
Sbjct: 478  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 537

Query: 1833 QDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQVFNLIIPK 2012
            QDTLLGCRKITKRDT IEKDVFMN LMWW++FDGKIPAP I KPRPIWTGKQVFNLIIPK
Sbjct: 538  QDTLLGCRKITKRDTLIEKDVFMNTLMWWQDFDGKIPAPAILKPRPIWTGKQVFNLIIPK 597

Query: 2013 QINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHVIWEEVGP 2192
            QINLIR+SAWH+E+E GF+T GDT VRIEKGE+L GTLCKK+LG+ SGSLIHVIWEEVGP
Sbjct: 598  QINLIRFSAWHSETETGFITPGDTMVRIEKGELLSGTLCKKSLGTGSGSLIHVIWEEVGP 657

Query: 2193 DAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQLIEKAQE 2372
            DAARKFLGHTQWLVNYWLLQQGFS+GIGDTIADAATMEKINETIS AK +V++LI++AQ+
Sbjct: 658  DAARKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISKAKNEVKELIKQAQD 717

Query: 2373 KKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINIS 2552
            K LEAEPGRTMMESFEN+VNQVLNKARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINIS
Sbjct: 718  KHLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 777

Query: 2553 QMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMG 2732
            QMTACVGQQNVEGKRIP+GF  RTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMG
Sbjct: 778  QMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 837

Query: 2733 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 2912
            GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE
Sbjct: 838  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 897

Query: 2913 SQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAEVQKLEAD 3092
            SQKLDSLKMK+ EFD+ ++YE D ++W PNYMLP +++DLK+IREF+NVF AEVQKLEAD
Sbjct: 898  SQKLDSLKMKKGEFDNVFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEVQKLEAD 957

Query: 3093 RRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAIDKLQERLR 3272
            R QLG EI  +GDNSWP+PVNLKRLIWN QK FKID RRPSDMHPMEIVEAIDKLQERL+
Sbjct: 958  RFQLGTEITTTGDNSWPMPVNLKRLIWNAQKTFKIDFRRPSDMHPMEIVEAIDKLQERLK 1017

Query: 3273 VVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEARFLQSLV 3452
            VVPGDD +S EAQKNATLFFNILLRST ASKRVLKEY LTKEAFEW++GEIE+RFLQSLV
Sbjct: 1018 VVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLV 1077

Query: 3453 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 3632
            APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV
Sbjct: 1078 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1137

Query: 3633 YLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYYEMPD 3812
            YLKPEV K KE AKNVQCALEYTTLRSVT ATE+WYDPDP+ TIIEEDV+FV+SYYEMPD
Sbjct: 1138 YLKPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPD 1197

Query: 3813 EDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKLILRI 3992
            EDI PD+ISPWLLRIELNREMM+DKKLSMADIAEKIN EF DD++CIFNDDNA+KLILRI
Sbjct: 1198 EDIDPDKISPWLLRIELNREMMIDKKLSMADIAEKINREFDDDLSCIFNDDNADKLILRI 1257

Query: 3993 RIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFDENEG 4172
            RI NDDAPKGE++D + EDD FLK+IE NMLT+M+LRGIPDINKVFIK  K+NKFD++EG
Sbjct: 1258 RITNDDAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKHGKVNKFDQSEG 1317

Query: 4173 FTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELRVVIS 4352
            F    EWMLDTEGVN+LAVMCHEDVDA+RTTSNHLIEVIEVLGIEAVR++LLDELRVVIS
Sbjct: 1318 FKADNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVIS 1377

Query: 4353 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAMFAE 4532
            FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAA++AE
Sbjct: 1378 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAE 1437

Query: 4533 SDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSMSPVL 4712
            +D LRGVTENIMLGQLAPIGTG C+LYL+D+MLQQAIELQLPSY+EG+DF M+P+ SP+ 
Sbjct: 1438 ADLLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTPARSPIS 1497

Query: 4713 -SPNHDPMMSPSYLFSPNMHSSPI-ADAQFSPYVGGMAF 4823
             +P H+ MMSPSYL SPN+ +SPI  DA FSPYVG MAF
Sbjct: 1498 GTPYHEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAF 1536


>ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5
            [Citrus sinensis]
          Length = 1963

 Score = 2669 bits (6917), Expect = 0.0
 Identities = 1302/1538 (84%), Positives = 1421/1538 (92%), Gaps = 1/1538 (0%)
 Frame = +3

Query: 213  MDTRFPFSPAEVAKVKMVQFGIISPDEIRQMSVAQIEHSEIYDNGKPRTGGLSDPRLGTI 392
            MDTRFP+SPAEVAKV+MVQFGI+SPDEIRQMSV QIEH E  + GKP+ GGLSDPRLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 393  DRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRILADEEDHR 572
            DRK+KCE+C A MAECPGHFGHLELAKPM+HIGF+KTVLSI+R VCFNCS+ILADE+DH+
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 573  FKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXXVKKKPHGGCGSQQPKI 752
            FKQA+K++NPK+RLK++LD CKNKTKCEGGD I            K K  GGCG+QQPK+
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNK--GGCGAQQPKL 178

Query: 753  TIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQMLGFDPQ 932
            TI+GMK+IAEY+A RKK D+Q+QL PEPVERKQ LTAERVL +LKRISDE+CQ+LG +P+
Sbjct: 179  TIEGMKMIAEYKAQRKKNDDQEQL-PEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237

Query: 933  FARPDWMILQVLXXXXXXXXXSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQEKNGAPAH 1112
            +ARPDWMILQVL         SVMM+++SRSEDDLTHQLAMIIRHNE L++QE+NGAPAH
Sbjct: 238  YARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAH 297

Query: 1113 IVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 1292
            I++EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF
Sbjct: 298  IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 357

Query: 1293 SARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPPGKTGAKY 1472
            SARTVITPDP INIDQLGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPPGKTGAKY
Sbjct: 358  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 417

Query: 1473 IIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 1652
            IIRDDGQRLDLRYLK+SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP
Sbjct: 418  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 477

Query: 1653 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV 1832
            YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIV
Sbjct: 478  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 537

Query: 1833 QDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQVFNLIIPK 2012
            QDTLLGCRKITKRDTFIEKDVFMNILMWWE+FDGK+P PTI KPRP+WTGKQVFNLIIPK
Sbjct: 538  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 597

Query: 2013 QINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHVIWEEVGP 2192
            QINL R +AWH +++KG LT GDT VRIEKGE+L GTLCKKTLG+S+GSLIHVIWEEVGP
Sbjct: 598  QINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 657

Query: 2193 DAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQLIEKAQE 2372
            DAARKFLGHTQWLVNYWLLQ  FS+GIGDTIADA TME IN+TIS AK  V+ LI++AQ+
Sbjct: 658  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 717

Query: 2373 KKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINIS 2552
            K LE EPGRTMMESFEN+VNQVLN ARD+AG+SAQKSLSESNNLKAMVTAGSKGSFINIS
Sbjct: 718  KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 777

Query: 2553 QMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMG 2732
            QMTACVGQQNVEGKRIP+GF  RTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMG
Sbjct: 778  QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 837

Query: 2733 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 2912
            GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE
Sbjct: 838  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 897

Query: 2913 SQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAEVQKLEAD 3092
            SQ LDSLKMK+ EFD  +++E D+++W+PNYML  YI+DLK+I+E ++VF+AEVQKLEAD
Sbjct: 898  SQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEAD 957

Query: 3093 RRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAIDKLQERLR 3272
            R QL  EIA SGD+SWPLPVNLKRLIWN QK FK+DPRRPSDMHPME+VEA+DKLQERL+
Sbjct: 958  RYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLK 1017

Query: 3273 VVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEARFLQSLV 3452
            VVPG+D LS EAQKNATLFFNILLRST ASKRVLKE+ LT+EAFEW++GEIE+RFLQSLV
Sbjct: 1018 VVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1077

Query: 3453 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 3632
            APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV
Sbjct: 1078 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1137

Query: 3633 YLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYYEMPD 3812
            +LKP V  TKERAKNVQCALEYTTLRSVTEATEVWYDPDPM TIIEEDV+FVKSYYEMPD
Sbjct: 1138 FLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPD 1197

Query: 3813 EDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKLILRI 3992
            EDI+P++ISPWLLRIELNREMMVDKKLSMA +AEKIN EF DD+TCIFNDDNA+KLILRI
Sbjct: 1198 EDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRI 1257

Query: 3993 RIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFDENEG 4172
            RIMND+APKGE+ D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK  K  K+D+NEG
Sbjct: 1258 RIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEG 1317

Query: 4173 FTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELRVVIS 4352
            F    EWMLDTEGVN+LAVMCHEDVDA RTTSNHLIE+IEVLGIEAVR+ALLDELRVVIS
Sbjct: 1318 FKSEDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVIS 1377

Query: 4353 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAMFAE 4532
            FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA+FAE
Sbjct: 1378 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE 1437

Query: 4533 SDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSMSPVL 4712
            SDYLRGVTENIMLGQLAPIGTG CSLYL+D+ML+ AIELQLPSYMEG++F M+P+ SPV 
Sbjct: 1438 SDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVS 1497

Query: 4713 -SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 4823
             +P HD MMSP YLFSPN+  SP+ DAQFSPYVGGMAF
Sbjct: 1498 GTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535


>ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X4
            [Citrus sinensis]
          Length = 1853

 Score = 2669 bits (6917), Expect = 0.0
 Identities = 1302/1538 (84%), Positives = 1421/1538 (92%), Gaps = 1/1538 (0%)
 Frame = +3

Query: 213  MDTRFPFSPAEVAKVKMVQFGIISPDEIRQMSVAQIEHSEIYDNGKPRTGGLSDPRLGTI 392
            MDTRFP+SPAEVAKV+MVQFGI+SPDEIRQMSV QIEH E  + GKP+ GGLSDPRLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 393  DRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRILADEEDHR 572
            DRK+KCE+C A MAECPGHFGHLELAKPM+HIGF+KTVLSI+R VCFNCS+ILADE+DH+
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 573  FKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXXVKKKPHGGCGSQQPKI 752
            FKQA+K++NPK+RLK++LD CKNKTKCEGGD I            K K  GGCG+QQPK+
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNK--GGCGAQQPKL 178

Query: 753  TIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQMLGFDPQ 932
            TI+GMK+IAEY+A RKK D+Q+QL PEPVERKQ LTAERVL +LKRISDE+CQ+LG +P+
Sbjct: 179  TIEGMKMIAEYKAQRKKNDDQEQL-PEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237

Query: 933  FARPDWMILQVLXXXXXXXXXSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQEKNGAPAH 1112
            +ARPDWMILQVL         SVMM+++SRSEDDLTHQLAMIIRHNE L++QE+NGAPAH
Sbjct: 238  YARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAH 297

Query: 1113 IVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 1292
            I++EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF
Sbjct: 298  IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 357

Query: 1293 SARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPPGKTGAKY 1472
            SARTVITPDP INIDQLGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPPGKTGAKY
Sbjct: 358  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 417

Query: 1473 IIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 1652
            IIRDDGQRLDLRYLK+SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP
Sbjct: 418  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 477

Query: 1653 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV 1832
            YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIV
Sbjct: 478  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 537

Query: 1833 QDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQVFNLIIPK 2012
            QDTLLGCRKITKRDTFIEKDVFMNILMWWE+FDGK+P PTI KPRP+WTGKQVFNLIIPK
Sbjct: 538  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 597

Query: 2013 QINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHVIWEEVGP 2192
            QINL R +AWH +++KG LT GDT VRIEKGE+L GTLCKKTLG+S+GSLIHVIWEEVGP
Sbjct: 598  QINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 657

Query: 2193 DAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQLIEKAQE 2372
            DAARKFLGHTQWLVNYWLLQ  FS+GIGDTIADA TME IN+TIS AK  V+ LI++AQ+
Sbjct: 658  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 717

Query: 2373 KKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINIS 2552
            K LE EPGRTMMESFEN+VNQVLN ARD+AG+SAQKSLSESNNLKAMVTAGSKGSFINIS
Sbjct: 718  KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 777

Query: 2553 QMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMG 2732
            QMTACVGQQNVEGKRIP+GF  RTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMG
Sbjct: 778  QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 837

Query: 2733 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 2912
            GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE
Sbjct: 838  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 897

Query: 2913 SQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAEVQKLEAD 3092
            SQ LDSLKMK+ EFD  +++E D+++W+PNYML  YI+DLK+I+E ++VF+AEVQKLEAD
Sbjct: 898  SQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEAD 957

Query: 3093 RRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAIDKLQERLR 3272
            R QL  EIA SGD+SWPLPVNLKRLIWN QK FK+DPRRPSDMHPME+VEA+DKLQERL+
Sbjct: 958  RYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLK 1017

Query: 3273 VVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEARFLQSLV 3452
            VVPG+D LS EAQKNATLFFNILLRST ASKRVLKE+ LT+EAFEW++GEIE+RFLQSLV
Sbjct: 1018 VVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1077

Query: 3453 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 3632
            APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV
Sbjct: 1078 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1137

Query: 3633 YLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYYEMPD 3812
            +LKP V  TKERAKNVQCALEYTTLRSVTEATEVWYDPDPM TIIEEDV+FVKSYYEMPD
Sbjct: 1138 FLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPD 1197

Query: 3813 EDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKLILRI 3992
            EDI+P++ISPWLLRIELNREMMVDKKLSMA +AEKIN EF DD+TCIFNDDNA+KLILRI
Sbjct: 1198 EDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRI 1257

Query: 3993 RIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFDENEG 4172
            RIMND+APKGE+ D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK  K  K+D+NEG
Sbjct: 1258 RIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEG 1317

Query: 4173 FTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELRVVIS 4352
            F    EWMLDTEGVN+LAVMCHEDVDA RTTSNHLIE+IEVLGIEAVR+ALLDELRVVIS
Sbjct: 1318 FKSEDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVIS 1377

Query: 4353 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAMFAE 4532
            FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA+FAE
Sbjct: 1378 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE 1437

Query: 4533 SDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSMSPVL 4712
            SDYLRGVTENIMLGQLAPIGTG CSLYL+D+ML+ AIELQLPSYMEG++F M+P+ SPV 
Sbjct: 1438 SDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVS 1497

Query: 4713 -SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 4823
             +P HD MMSP YLFSPN+  SP+ DAQFSPYVGGMAF
Sbjct: 1498 GTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535


>ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X3
            [Citrus sinensis]
          Length = 1790

 Score = 2669 bits (6917), Expect = 0.0
 Identities = 1302/1538 (84%), Positives = 1421/1538 (92%), Gaps = 1/1538 (0%)
 Frame = +3

Query: 213  MDTRFPFSPAEVAKVKMVQFGIISPDEIRQMSVAQIEHSEIYDNGKPRTGGLSDPRLGTI 392
            MDTRFP+SPAEVAKV+MVQFGI+SPDEIRQMSV QIEH E  + GKP+ GGLSDPRLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 393  DRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRILADEEDHR 572
            DRK+KCE+C A MAECPGHFGHLELAKPM+HIGF+KTVLSI+R VCFNCS+ILADE+DH+
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 573  FKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXXVKKKPHGGCGSQQPKI 752
            FKQA+K++NPK+RLK++LD CKNKTKCEGGD I            K K  GGCG+QQPK+
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNK--GGCGAQQPKL 178

Query: 753  TIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQMLGFDPQ 932
            TI+GMK+IAEY+A RKK D+Q+QL PEPVERKQ LTAERVL +LKRISDE+CQ+LG +P+
Sbjct: 179  TIEGMKMIAEYKAQRKKNDDQEQL-PEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237

Query: 933  FARPDWMILQVLXXXXXXXXXSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQEKNGAPAH 1112
            +ARPDWMILQVL         SVMM+++SRSEDDLTHQLAMIIRHNE L++QE+NGAPAH
Sbjct: 238  YARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAH 297

Query: 1113 IVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 1292
            I++EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF
Sbjct: 298  IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 357

Query: 1293 SARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPPGKTGAKY 1472
            SARTVITPDP INIDQLGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPPGKTGAKY
Sbjct: 358  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 417

Query: 1473 IIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 1652
            IIRDDGQRLDLRYLK+SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP
Sbjct: 418  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 477

Query: 1653 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV 1832
            YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIV
Sbjct: 478  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 537

Query: 1833 QDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQVFNLIIPK 2012
            QDTLLGCRKITKRDTFIEKDVFMNILMWWE+FDGK+P PTI KPRP+WTGKQVFNLIIPK
Sbjct: 538  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 597

Query: 2013 QINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHVIWEEVGP 2192
            QINL R +AWH +++KG LT GDT VRIEKGE+L GTLCKKTLG+S+GSLIHVIWEEVGP
Sbjct: 598  QINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 657

Query: 2193 DAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQLIEKAQE 2372
            DAARKFLGHTQWLVNYWLLQ  FS+GIGDTIADA TME IN+TIS AK  V+ LI++AQ+
Sbjct: 658  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 717

Query: 2373 KKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINIS 2552
            K LE EPGRTMMESFEN+VNQVLN ARD+AG+SAQKSLSESNNLKAMVTAGSKGSFINIS
Sbjct: 718  KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 777

Query: 2553 QMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMG 2732
            QMTACVGQQNVEGKRIP+GF  RTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMG
Sbjct: 778  QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 837

Query: 2733 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 2912
            GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE
Sbjct: 838  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 897

Query: 2913 SQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAEVQKLEAD 3092
            SQ LDSLKMK+ EFD  +++E D+++W+PNYML  YI+DLK+I+E ++VF+AEVQKLEAD
Sbjct: 898  SQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEAD 957

Query: 3093 RRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAIDKLQERLR 3272
            R QL  EIA SGD+SWPLPVNLKRLIWN QK FK+DPRRPSDMHPME+VEA+DKLQERL+
Sbjct: 958  RYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLK 1017

Query: 3273 VVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEARFLQSLV 3452
            VVPG+D LS EAQKNATLFFNILLRST ASKRVLKE+ LT+EAFEW++GEIE+RFLQSLV
Sbjct: 1018 VVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1077

Query: 3453 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 3632
            APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV
Sbjct: 1078 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1137

Query: 3633 YLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYYEMPD 3812
            +LKP V  TKERAKNVQCALEYTTLRSVTEATEVWYDPDPM TIIEEDV+FVKSYYEMPD
Sbjct: 1138 FLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPD 1197

Query: 3813 EDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKLILRI 3992
            EDI+P++ISPWLLRIELNREMMVDKKLSMA +AEKIN EF DD+TCIFNDDNA+KLILRI
Sbjct: 1198 EDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRI 1257

Query: 3993 RIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFDENEG 4172
            RIMND+APKGE+ D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK  K  K+D+NEG
Sbjct: 1258 RIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEG 1317

Query: 4173 FTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELRVVIS 4352
            F    EWMLDTEGVN+LAVMCHEDVDA RTTSNHLIE+IEVLGIEAVR+ALLDELRVVIS
Sbjct: 1318 FKSEDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVIS 1377

Query: 4353 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAMFAE 4532
            FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA+FAE
Sbjct: 1378 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE 1437

Query: 4533 SDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSMSPVL 4712
            SDYLRGVTENIMLGQLAPIGTG CSLYL+D+ML+ AIELQLPSYMEG++F M+P+ SPV 
Sbjct: 1438 SDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVS 1497

Query: 4713 -SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 4823
             +P HD MMSP YLFSPN+  SP+ DAQFSPYVGGMAF
Sbjct: 1498 GTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535


>ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X1
            [Citrus sinensis] gi|568825318|ref|XP_006467028.1|
            PREDICTED: DNA-directed RNA polymerase II subunit 1-like
            isoform X2 [Citrus sinensis]
          Length = 1860

 Score = 2669 bits (6917), Expect = 0.0
 Identities = 1302/1538 (84%), Positives = 1421/1538 (92%), Gaps = 1/1538 (0%)
 Frame = +3

Query: 213  MDTRFPFSPAEVAKVKMVQFGIISPDEIRQMSVAQIEHSEIYDNGKPRTGGLSDPRLGTI 392
            MDTRFP+SPAEVAKV+MVQFGI+SPDEIRQMSV QIEH E  + GKP+ GGLSDPRLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 393  DRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRILADEEDHR 572
            DRK+KCE+C A MAECPGHFGHLELAKPM+HIGF+KTVLSI+R VCFNCS+ILADE+DH+
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 573  FKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXXVKKKPHGGCGSQQPKI 752
            FKQA+K++NPK+RLK++LD CKNKTKCEGGD I            K K  GGCG+QQPK+
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNK--GGCGAQQPKL 178

Query: 753  TIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQMLGFDPQ 932
            TI+GMK+IAEY+A RKK D+Q+QL PEPVERKQ LTAERVL +LKRISDE+CQ+LG +P+
Sbjct: 179  TIEGMKMIAEYKAQRKKNDDQEQL-PEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237

Query: 933  FARPDWMILQVLXXXXXXXXXSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQEKNGAPAH 1112
            +ARPDWMILQVL         SVMM+++SRSEDDLTHQLAMIIRHNE L++QE+NGAPAH
Sbjct: 238  YARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAH 297

Query: 1113 IVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 1292
            I++EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF
Sbjct: 298  IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 357

Query: 1293 SARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPPGKTGAKY 1472
            SARTVITPDP INIDQLGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPPGKTGAKY
Sbjct: 358  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 417

Query: 1473 IIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 1652
            IIRDDGQRLDLRYLK+SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP
Sbjct: 418  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 477

Query: 1653 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV 1832
            YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIV
Sbjct: 478  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 537

Query: 1833 QDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQVFNLIIPK 2012
            QDTLLGCRKITKRDTFIEKDVFMNILMWWE+FDGK+P PTI KPRP+WTGKQVFNLIIPK
Sbjct: 538  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 597

Query: 2013 QINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHVIWEEVGP 2192
            QINL R +AWH +++KG LT GDT VRIEKGE+L GTLCKKTLG+S+GSLIHVIWEEVGP
Sbjct: 598  QINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 657

Query: 2193 DAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQLIEKAQE 2372
            DAARKFLGHTQWLVNYWLLQ  FS+GIGDTIADA TME IN+TIS AK  V+ LI++AQ+
Sbjct: 658  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 717

Query: 2373 KKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINIS 2552
            K LE EPGRTMMESFEN+VNQVLN ARD+AG+SAQKSLSESNNLKAMVTAGSKGSFINIS
Sbjct: 718  KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 777

Query: 2553 QMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMG 2732
            QMTACVGQQNVEGKRIP+GF  RTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMG
Sbjct: 778  QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 837

Query: 2733 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 2912
            GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE
Sbjct: 838  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 897

Query: 2913 SQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAEVQKLEAD 3092
            SQ LDSLKMK+ EFD  +++E D+++W+PNYML  YI+DLK+I+E ++VF+AEVQKLEAD
Sbjct: 898  SQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEAD 957

Query: 3093 RRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAIDKLQERLR 3272
            R QL  EIA SGD+SWPLPVNLKRLIWN QK FK+DPRRPSDMHPME+VEA+DKLQERL+
Sbjct: 958  RYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLK 1017

Query: 3273 VVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEARFLQSLV 3452
            VVPG+D LS EAQKNATLFFNILLRST ASKRVLKE+ LT+EAFEW++GEIE+RFLQSLV
Sbjct: 1018 VVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1077

Query: 3453 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 3632
            APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV
Sbjct: 1078 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1137

Query: 3633 YLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYYEMPD 3812
            +LKP V  TKERAKNVQCALEYTTLRSVTEATEVWYDPDPM TIIEEDV+FVKSYYEMPD
Sbjct: 1138 FLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPD 1197

Query: 3813 EDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKLILRI 3992
            EDI+P++ISPWLLRIELNREMMVDKKLSMA +AEKIN EF DD+TCIFNDDNA+KLILRI
Sbjct: 1198 EDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRI 1257

Query: 3993 RIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFDENEG 4172
            RIMND+APKGE+ D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK  K  K+D+NEG
Sbjct: 1258 RIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEG 1317

Query: 4173 FTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELRVVIS 4352
            F    EWMLDTEGVN+LAVMCHEDVDA RTTSNHLIE+IEVLGIEAVR+ALLDELRVVIS
Sbjct: 1318 FKSEDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVIS 1377

Query: 4353 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAMFAE 4532
            FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA+FAE
Sbjct: 1378 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE 1437

Query: 4533 SDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSMSPVL 4712
            SDYLRGVTENIMLGQLAPIGTG CSLYL+D+ML+ AIELQLPSYMEG++F M+P+ SPV 
Sbjct: 1438 SDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVS 1497

Query: 4713 -SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 4823
             +P HD MMSP YLFSPN+  SP+ DAQFSPYVGGMAF
Sbjct: 1498 GTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535


>ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Solanum
            tuberosum]
          Length = 1839

 Score = 2669 bits (6917), Expect = 0.0
 Identities = 1310/1539 (85%), Positives = 1426/1539 (92%), Gaps = 2/1539 (0%)
 Frame = +3

Query: 213  MDTRFPFSPAEVAKVKMVQFGIISPDEIRQMSVAQIEHSEIYDNGKPRTGGLSDPRLGTI 392
            MD RFPFSPAEVAKV+ VQFGI+SPDEIRQMSV  IEH E  + GKP+ GGLSDPRLGTI
Sbjct: 1    MDLRFPFSPAEVAKVRTVQFGIVSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 393  DRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRILADEEDHR 572
            DRK+KCE+C A MAECPGHFGHLELAKPM+HIGF+K VLSILRCVCFNCS+ILADE+D +
Sbjct: 61   DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKPVLSILRCVCFNCSKILADEDDPK 120

Query: 573  FKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXXVKKKPHGGCGSQQPKI 752
            FKQAM+++NPK+RL+++LD CKNKTKCEGGD I             KK  GGCG+QQPKI
Sbjct: 121  FKQAMRIRNPKNRLRKMLDACKNKTKCEGGDEIDVQGHDTEEPV--KKSRGGCGAQQPKI 178

Query: 753  TIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQMLGFDPQ 932
            +IDGMK++AEY+  +KK+D+ +Q MPEPVERKQQL+AERVL+ILKR+SDE+C +LG +P+
Sbjct: 179  SIDGMKMVAEYKMQKKKSDDPEQ-MPEPVERKQQLSAERVLSILKRVSDEDCLLLGLNPE 237

Query: 933  FARPDWMILQVLXXXXXXXXXSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQEKNGAPAH 1112
            FARPDWMILQ L         SVMM+++SRSEDDLTHQLAMIIRHNE LK+QE+NGAPAH
Sbjct: 238  FARPDWMILQALPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAH 297

Query: 1113 IVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 1292
            I++EFAQLLQFH+ATYFDN+LPGQPRATQRSGRPIKSICSRLK+KEGRIRGNLMGKRVDF
Sbjct: 298  IISEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVDF 357

Query: 1293 SARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPPGKTGAKY 1472
            SARTVITPDP INIDQLGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPPGKTGAKY
Sbjct: 358  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 417

Query: 1473 IIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 1652
            IIRDDGQRLDLRYLK+SSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP
Sbjct: 418  IIRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 477

Query: 1653 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV 1832
            YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV
Sbjct: 478  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV 537

Query: 1833 QDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQVFNLIIPK 2012
            QDTLLGCRK+TKRDTFIEKDVFMNILMWWE+FDGK+PAP I KPRP+WTGKQVFNLIIPK
Sbjct: 538  QDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPVILKPRPLWTGKQVFNLIIPK 597

Query: 2013 QINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHVIWEEVGP 2192
            QINL+RYSAWHN+SEKG++T GDTQVRIEKGE+L GTLCKKTLG+S+GSLIHVIWEEVGP
Sbjct: 598  QINLLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 657

Query: 2193 DAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQLIEKAQE 2372
            DAARKFLGHTQWLVNYWLLQQ FS+GIGDTIADA+TMEKINETISNAK KV++LI+ AQE
Sbjct: 658  DAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKAKVKELIKAAQE 717

Query: 2373 KKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINIS 2552
            K LEAEPGRTMMESFEN+VNQVLNKARDDAG+SA+KSLSESNNLKAMVTAGSKGSFINIS
Sbjct: 718  KLLEAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINIS 777

Query: 2553 QMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMG 2732
            QMTACVGQQNVEGKRIP+GF  RTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMG
Sbjct: 778  QMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 837

Query: 2733 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 2912
            GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE
Sbjct: 838  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 897

Query: 2913 SQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAEVQKLEAD 3092
            +QKLDSLK K+  FDD Y YE D  +W+P+YMLP  +EDLK IRE ++VF+AEVQKLEAD
Sbjct: 898  TQKLDSLKAKKGTFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIREIRSVFDAEVQKLEAD 957

Query: 3093 RRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAIDKLQERLR 3272
            R QLG EIA +GDNSWPLPVN++RL+ N QK FKID RRPSDMHPMEIVEA+DKLQERL+
Sbjct: 958  RHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHPMEIVEAVDKLQERLK 1017

Query: 3273 VVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEARFLQSLV 3452
            VVPGDD LS EAQKNATLFFNILLRS LASKRVLKEY L++EAFEW+VGEIE+RFLQSLV
Sbjct: 1018 VVPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFEWVVGEIESRFLQSLV 1077

Query: 3453 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 3632
            APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV
Sbjct: 1078 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1137

Query: 3633 YLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYYEMPD 3812
            YLKPEVGKTKERAK VQCALEYTTLRSVT+ATEVWYDPDPMST+IEEDV+FVKSYYEMPD
Sbjct: 1138 YLKPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPD 1197

Query: 3813 EDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKLILRI 3992
            E+I PD+ISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD+TCIFNDDNAEKLILRI
Sbjct: 1198 EEIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINVEFDDDLTCIFNDDNAEKLILRI 1257

Query: 3993 RIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFDENEG 4172
            RIMND+APKGE+ D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK+ K+ KFD+NEG
Sbjct: 1258 RIMNDEAPKGEL-DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKVQKFDDNEG 1316

Query: 4173 FTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELRVVIS 4352
            F    EWMLDTEGVN+LAVM HEDVDASRTTSNHLIEVIEVLGIEAVR++LLDELRVVIS
Sbjct: 1317 FKAENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIEAVRRSLLDELRVVIS 1376

Query: 4353 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAMFAE 4532
            FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA+FAE
Sbjct: 1377 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE 1436

Query: 4533 SDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYME-GVDFAMSPSMSPV 4709
            SD+LRGVTENIMLGQLAPIGTG CSLYL+++ML+QAIE+ LPSYME G++F M+P  SP+
Sbjct: 1437 SDHLRGVTENIMLGQLAPIGTGSCSLYLNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPI 1496

Query: 4710 L-SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 4823
              +P HD MMSP+YL SPNM  SPI DAQFSPYVGGMAF
Sbjct: 1497 SGTPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 1535


>ref|XP_004972810.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
            X2 [Setaria italica]
          Length = 1852

 Score = 2668 bits (6916), Expect = 0.0
 Identities = 1302/1539 (84%), Positives = 1427/1539 (92%), Gaps = 2/1539 (0%)
 Frame = +3

Query: 213  MDTRFPFSPAEVAKVKMVQFGIISPDEIRQMSVAQIEHSEIYDNGKPRTGGLSDPRLGTI 392
            MD RFP+SPAEVAKV++VQFGI+SPDEIRQMSV QIEH+E  + GKP+ GGLSDPRLGTI
Sbjct: 1    MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVIQIEHAETMERGKPKPGGLSDPRLGTI 60

Query: 393  DRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRILADEEDHR 572
            DRK+KCE+C AGMAECPGHFGHLELAKPM+HIGF+KTVLSI+RCVCFNCS+ILADE+D +
Sbjct: 61   DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTK 120

Query: 573  FKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXXVKKKPHGGCGSQQPKI 752
            FKQA+K++NPK+RLKR+ D CK+K  C GGD +           VKK+  GGCG+QQP I
Sbjct: 121  FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQQDTDEPVKKR--GGCGAQQPNI 178

Query: 753  TIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQMLGFDPQ 932
            T+DGMK++AE++AP+KK D+QDQL PEPVERKQ L+AERVLN+LKRISDE+C +LG +P+
Sbjct: 179  TVDGMKMVAEFKAPKKKTDDQDQL-PEPVERKQILSAERVLNVLKRISDEDCLLLGLNPK 237

Query: 933  FARPDWMILQVLXXXXXXXXXSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQEKNGAPAH 1112
            FARPDWMILQVL         SVMM+++SRSEDDLTHQLAMIIRHNE L++QE+NGAPAH
Sbjct: 238  FARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAH 297

Query: 1113 IVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 1292
            I+TEFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF
Sbjct: 298  IITEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 357

Query: 1293 SARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPPGKTGAKY 1472
            SARTVITPDPNINID+LGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPPGKTGAKY
Sbjct: 358  SARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 417

Query: 1473 IIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 1652
            IIR+DGQRLDLRY+K+SSD HL+LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP
Sbjct: 418  IIREDGQRLDLRYVKKSSDQHLDLGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 477

Query: 1653 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV 1832
            YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIV
Sbjct: 478  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 537

Query: 1833 QDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQVFNLIIPK 2012
            QDTLLGCRKITKRDT IEKDVFMNILMWW++FDGKIPAP I KPRPIWTGKQVFNLIIPK
Sbjct: 538  QDTLLGCRKITKRDTLIEKDVFMNILMWWQDFDGKIPAPAILKPRPIWTGKQVFNLIIPK 597

Query: 2013 QINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHVIWEEVGP 2192
            QINLIR+SAWH+E+E GF+T GDT VRIEKGE+L GTLCKK+LG+ SGSLIHVIWEEVGP
Sbjct: 598  QINLIRFSAWHSETETGFITPGDTMVRIEKGELLSGTLCKKSLGTGSGSLIHVIWEEVGP 657

Query: 2193 DAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQLIEKAQE 2372
            DAARKFLGHTQWLVNYWLLQQGFS+GIGDTIADAATMEKINETIS AK +V++LI++A E
Sbjct: 658  DAARKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISKAKNEVKELIKQAHE 717

Query: 2373 KKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINIS 2552
              LEAEPGRTMMESFEN+VNQVLNKARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINIS
Sbjct: 718  NHLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 777

Query: 2553 QMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMG 2732
            QMTACVGQQNVEGKRIP+GF  RTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMG
Sbjct: 778  QMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 837

Query: 2733 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 2912
            GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE
Sbjct: 838  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 897

Query: 2913 SQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAEVQKLEAD 3092
            SQKLDSLKMK+ EFD+ ++YE D ++W PNYMLP +++DLK+IREF+NVF AEVQKLEAD
Sbjct: 898  SQKLDSLKMKKGEFDNVFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEVQKLEAD 957

Query: 3093 RRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAIDKLQERLR 3272
            R QLG EI  +GDNSWP+PVNLKRLIWN QK FKID RRPSDMHPMEIVEAIDKLQERL+
Sbjct: 958  RFQLGTEITTTGDNSWPMPVNLKRLIWNAQKTFKIDFRRPSDMHPMEIVEAIDKLQERLK 1017

Query: 3273 VVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEARFLQSLV 3452
            VVPGDD +S EAQKNATLFFNILLRST ASKRVLKEY LTKEAFEW++GEIE+RFLQSLV
Sbjct: 1018 VVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLV 1077

Query: 3453 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 3632
            APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV
Sbjct: 1078 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1137

Query: 3633 YLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYYEMPD 3812
            YLKPEV K KE AKNVQCALEYTTLRSVT ATE+WYDPDP+ TIIEEDV+FV+SYYEMPD
Sbjct: 1138 YLKPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPD 1197

Query: 3813 EDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKLILRI 3992
            EDI PD+ISPWLLRIELNREMM+DKKLSMADIAEKIN EF DD++CIFNDDNA+KLILRI
Sbjct: 1198 EDIDPDKISPWLLRIELNREMMIDKKLSMADIAEKINREFDDDLSCIFNDDNADKLILRI 1257

Query: 3993 RIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFDENEG 4172
            RI NDDAPKGE++D + EDD FLK+IE NMLT+M+LRGIPDINKVFIK  K+NKFD++EG
Sbjct: 1258 RITNDDAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKHGKVNKFDQSEG 1317

Query: 4173 FTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELRVVIS 4352
            F    EWMLDTEGVN+LAVMCHEDVDA+RTTSNHLIEVIEVLGIEAVR++LLDELRVVIS
Sbjct: 1318 FKADNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVIS 1377

Query: 4353 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAMFAE 4532
            FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAA++AE
Sbjct: 1378 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAE 1437

Query: 4533 SDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSMSPVL 4712
            +D LRGVTENIMLGQLAPIGTG C+LYL+D+MLQQAIELQLPSY+EG+DF M+P+ SP+ 
Sbjct: 1438 ADLLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTPARSPIS 1497

Query: 4713 -SPNHDPMMSPSYLFSPNMHSSPI-ADAQFSPYVGGMAF 4823
             +P H+ MMSPSYL SPN+ +SPI  DA FSPYVG MAF
Sbjct: 1498 GTPYHEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAF 1536


>ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Solanum
            lycopersicum]
          Length = 1846

 Score = 2668 bits (6916), Expect = 0.0
 Identities = 1310/1539 (85%), Positives = 1426/1539 (92%), Gaps = 2/1539 (0%)
 Frame = +3

Query: 213  MDTRFPFSPAEVAKVKMVQFGIISPDEIRQMSVAQIEHSEIYDNGKPRTGGLSDPRLGTI 392
            MD RFPFSPAEVAKV+ VQFGI+SPDEIRQMSV  IEH E  + GKP+ GGLSDPRLGTI
Sbjct: 1    MDLRFPFSPAEVAKVRTVQFGIVSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 393  DRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRILADEEDHR 572
            DRK+KCE+C A MAECPGHFGHLELAKPM+HIGF+K VLSILRCVCFNCS+ILADE+D +
Sbjct: 61   DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKPVLSILRCVCFNCSKILADEDDPK 120

Query: 573  FKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXXVKKKPHGGCGSQQPKI 752
            FKQAM+++NPK+RL+++LD CKNKTKCEGGD I             KK  GGCG+QQPKI
Sbjct: 121  FKQAMRIRNPKNRLRKMLDACKNKTKCEGGDEIDVQGQDTEEPV--KKSRGGCGAQQPKI 178

Query: 753  TIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQMLGFDPQ 932
            +IDGMK++AEY+  +KK+D+ +Q MPEPVERKQQL+AERVL+ILKR+SDE+C +LG +P+
Sbjct: 179  SIDGMKMVAEYKMQKKKSDDPEQ-MPEPVERKQQLSAERVLSILKRVSDEDCLLLGLNPE 237

Query: 933  FARPDWMILQVLXXXXXXXXXSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQEKNGAPAH 1112
            FARPDWMILQ L         SVMM+++SRSEDDLTHQLAMIIRHNE LK+QE+NGAPAH
Sbjct: 238  FARPDWMILQALPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAH 297

Query: 1113 IVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 1292
            I++EFAQLLQFH+ATYFDN+LPGQPRATQRSGRPIKSICSRLK+KEGRIRGNLMGKRVDF
Sbjct: 298  IISEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVDF 357

Query: 1293 SARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPPGKTGAKY 1472
            SARTVITPDP INIDQLGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPPGKTGAKY
Sbjct: 358  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 417

Query: 1473 IIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 1652
            IIRDDGQRLDLRYLK+SSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP
Sbjct: 418  IIRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 477

Query: 1653 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV 1832
            YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV
Sbjct: 478  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV 537

Query: 1833 QDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQVFNLIIPK 2012
            QDTLLGCRK+TKRDTFIEKDVFMNILMWWE+FDGK+PAP I KPRP+WTGKQVFNLIIPK
Sbjct: 538  QDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPVILKPRPLWTGKQVFNLIIPK 597

Query: 2013 QINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHVIWEEVGP 2192
            QINL+RYSAWHN+SEKG++T GDTQVRIEKGE+L GTLCKKTLG+S+GSLIHVIWEEVGP
Sbjct: 598  QINLLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 657

Query: 2193 DAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQLIEKAQE 2372
            DAARKFLGHTQWLVNYWLLQQ FS+GIGDTIADA+TMEKINETISNAK KV++LI+ AQE
Sbjct: 658  DAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKAKVKELIKAAQE 717

Query: 2373 KKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINIS 2552
            K LEAEPGRTMMESFEN+VNQVLNKARDDAG+SA+KSLSESNNLKAMVTAGSKGSFINIS
Sbjct: 718  KLLEAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINIS 777

Query: 2553 QMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMG 2732
            QMTACVGQQNVEGKRIP+GF  RTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMG
Sbjct: 778  QMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 837

Query: 2733 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 2912
            GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE
Sbjct: 838  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 897

Query: 2913 SQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAEVQKLEAD 3092
            +QKLDSLK K+  FDD Y YE D  +W+P+YMLP  +EDLK IRE ++VF+AEVQKLEAD
Sbjct: 898  TQKLDSLKAKKGTFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIREIRSVFDAEVQKLEAD 957

Query: 3093 RRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAIDKLQERLR 3272
            R QLG EIA +GDNSWPLPVN++RL+ N QK FKID RRPSDMHPMEIVEA+DKLQERL+
Sbjct: 958  RHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHPMEIVEAVDKLQERLK 1017

Query: 3273 VVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEARFLQSLV 3452
            VVPGDD LS EAQKNATLFFNILLRS LASKRVLKEY L++EAFEW+VGEIE+RFLQSLV
Sbjct: 1018 VVPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFEWVVGEIESRFLQSLV 1077

Query: 3453 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 3632
            APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV
Sbjct: 1078 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1137

Query: 3633 YLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYYEMPD 3812
            YLKPEVGKTKERAK VQCALEYTTLRSVT+ATEVWYDPDPMST+IEEDV+FVKSYYEMPD
Sbjct: 1138 YLKPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPD 1197

Query: 3813 EDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKLILRI 3992
            E+I PD+ISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD+TCIFNDDNAEKLILRI
Sbjct: 1198 EEIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRI 1257

Query: 3993 RIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFDENEG 4172
            RIMND+APKGE+ D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK+ K+ KFD+NEG
Sbjct: 1258 RIMNDEAPKGEL-DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKVQKFDDNEG 1316

Query: 4173 FTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELRVVIS 4352
            F    EWMLDTEGVN+LAVM HEDVDASRTTSNHLIEVIEVLGIEAVR++LLDELRVVIS
Sbjct: 1317 FKAENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIEAVRRSLLDELRVVIS 1376

Query: 4353 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAMFAE 4532
            FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA+FAE
Sbjct: 1377 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE 1436

Query: 4533 SDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYME-GVDFAMSPSMSPV 4709
            SD+LRGVTENIMLGQLAPIGTG CSLYL+++ML+QAIE+ LPSYME G++F M+P  SP+
Sbjct: 1437 SDHLRGVTENIMLGQLAPIGTGGCSLYLNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPI 1496

Query: 4710 L-SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 4823
              +P HD MMSP+YL SPNM  SPI DAQFSPYVGGMAF
Sbjct: 1497 SGTPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 1535


>ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
            communis] gi|223529812|gb|EEF31747.1| DNA-directed RNA
            polymerase II largest subunit, putative [Ricinus
            communis]
          Length = 1855

 Score = 2667 bits (6913), Expect = 0.0
 Identities = 1306/1538 (84%), Positives = 1427/1538 (92%), Gaps = 1/1538 (0%)
 Frame = +3

Query: 213  MDTRFPFSPAEVAKVKMVQFGIISPDEIRQMSVAQIEHSEIYDNGKPRTGGLSDPRLGTI 392
            MD RFP+SPAEVAKV+MVQFGI+SPDEIRQMSV QIE SE  + GKP+ GGLSD RLGTI
Sbjct: 1    MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEFSETTERGKPKPGGLSDLRLGTI 60

Query: 393  DRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRILADEEDHR 572
            DRK+KCE+C A MAECPGHFGHLELAKPM+HIGFLKTVLSI+RCVCFNCS+ILADEEDH+
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 573  FKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXXVKKKPHGGCGSQQPKI 752
            FKQA+K+KNPK+RLK++LD CKNKTKCEGGD I             KK  GGCG+QQP++
Sbjct: 121  FKQALKIKNPKNRLKKILDACKNKTKCEGGDDIDVHSQDTDEPV--KKSRGGCGAQQPRM 178

Query: 753  TIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQMLGFDPQ 932
            TI+GMK+IAEY+A RKK D+Q+QL PEPVERKQ LTAERVL +LKRISD++C++LGF+P+
Sbjct: 179  TIEGMKMIAEYKAQRKKNDDQEQL-PEPVERKQTLTAERVLGVLKRISDDDCRLLGFNPK 237

Query: 933  FARPDWMILQVLXXXXXXXXXSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQEKNGAPAH 1112
            +ARPDWMILQVL         SVMM+++SRSEDDLTHQLAMIIRHNE LKKQEK GAPAH
Sbjct: 238  YARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKKQEKGGAPAH 297

Query: 1113 IVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 1292
            I++EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF
Sbjct: 298  IISEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 357

Query: 1293 SARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPPGKTGAKY 1472
            SARTVITPDPNINIDQLGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPPGKTGAKY
Sbjct: 358  SARTVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 417

Query: 1473 IIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 1652
            IIRDDGQRLDLRYLK+SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP
Sbjct: 418  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 477

Query: 1653 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV 1832
            YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIV
Sbjct: 478  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 537

Query: 1833 QDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQVFNLIIPK 2012
            QDTLLGCRKITKRDTFIEKDVFMNILMWWE+FDGK+PAP I KPRP+WTGKQVFNLIIPK
Sbjct: 538  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPK 597

Query: 2013 QINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHVIWEEVGP 2192
            QINLIR +AWH++SE+G +T GDT VRIEKGE+L GT+CKKTLG+S+GSLIHVIWEEVGP
Sbjct: 598  QINLIRTAAWHSDSERGVITPGDTLVRIEKGELLSGTVCKKTLGTSTGSLIHVIWEEVGP 657

Query: 2193 DAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQLIEKAQE 2372
            DAARKFLGHTQWLVNYWLLQ GFS+GIGDTIADAATMEKINETISNAK  V++LI KAQ 
Sbjct: 658  DAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISNAKNAVKELIRKAQN 717

Query: 2373 KKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINIS 2552
            K+LE +PGRTMMESFEN+VNQVLN+ARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINIS
Sbjct: 718  KELEPKPGRTMMESFENEVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 777

Query: 2553 QMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMG 2732
            QMTACVGQQNVEGKRIPYGF  RTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMG
Sbjct: 778  QMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 837

Query: 2733 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 2912
            GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE
Sbjct: 838  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 897

Query: 2913 SQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAEVQKLEAD 3092
            SQKLDSLKMK+ EFD  +KYE D ++W+P YM   +I+DLK+IRE ++VF+AEVQKLEAD
Sbjct: 898  SQKLDSLKMKKSEFDRVFKYELDDENWNPTYMYQDHIDDLKNIRELRDVFDAEVQKLEAD 957

Query: 3093 RRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAIDKLQERLR 3272
            R QLG EIA +GD+SWPLPVNL+RLIWN QK FK+D RRPSD+HPME VEA+DKLQERL+
Sbjct: 958  RYQLGTEIATTGDSSWPLPVNLRRLIWNAQKTFKVDKRRPSDIHPMEAVEAVDKLQERLK 1017

Query: 3273 VVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEARFLQSLV 3452
            VVPGDD LS EAQKNATLFF ILLRSTLASKRVL++Y LT+EAF+W++GEIE+RFLQSLV
Sbjct: 1018 VVPGDDPLSVEAQKNATLFFGILLRSTLASKRVLEDYRLTREAFDWVIGEIESRFLQSLV 1077

Query: 3453 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 3632
            APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS+
Sbjct: 1078 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSI 1137

Query: 3633 YLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYYEMPD 3812
            +L PE  KTKERAKNVQCALEYTTLRSVT+ATEVWYDPDPMSTIIEEDVDFVKSYYEMPD
Sbjct: 1138 FLIPECNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPD 1197

Query: 3813 EDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKLILRI 3992
            E+ISP++ISPWLLRIELNREMMVDKKL+MADIAEKIN EF DD+TCIFNDDNAEKLILRI
Sbjct: 1198 EEISPEKISPWLLRIELNREMMVDKKLNMADIAEKINLEFDDDLTCIFNDDNAEKLILRI 1257

Query: 3993 RIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFDENEG 4172
            RIMND+APKGE+ D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK  K++KFDENEG
Sbjct: 1258 RIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQSKVSKFDENEG 1317

Query: 4173 FTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELRVVIS 4352
            F   +EWMLDTEGVN+LAVMC+E+VDA RTTSNHLIEVIEVLGIEAVR++LLDELRVVIS
Sbjct: 1318 FKTIEEWMLDTEGVNLLAVMCNENVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVIS 1377

Query: 4353 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAMFAE 4532
            FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAA++AE
Sbjct: 1378 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAE 1437

Query: 4533 SDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSMSPV- 4709
            +DYLRGVTENIMLGQLAPIGTG C+LYL+D ML+ AIELQLPSYM+G+DF M+P+ SPV 
Sbjct: 1438 ADYLRGVTENIMLGQLAPIGTGDCALYLNDDMLKNAIELQLPSYMDGLDFGMTPARSPVS 1497

Query: 4710 LSPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 4823
            ++P HD MMSPSYL SP++  SP  DAQFSPYV GM F
Sbjct: 1498 VTPYHDGMMSPSYLLSPSLRLSPTTDAQFSPYVSGMPF 1535


>gb|ESW29856.1| hypothetical protein PHAVU_002G104500g [Phaseolus vulgaris]
          Length = 1834

 Score = 2666 bits (6911), Expect = 0.0
 Identities = 1304/1538 (84%), Positives = 1426/1538 (92%), Gaps = 1/1538 (0%)
 Frame = +3

Query: 213  MDTRFPFSPAEVAKVKMVQFGIISPDEIRQMSVAQIEHSEIYDNGKPRTGGLSDPRLGTI 392
            MD RFPFSPAEVAKV+MVQFGI+SPDEIRQMSV QIEH E  + GKP+  GLSDPRLGTI
Sbjct: 1    MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 393  DRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRILADEEDHR 572
            DRKLKCE+C A MAECPGHFGHLELAKPM+HIGFLKTVL+I+RCVCFNCS+ILADE DH+
Sbjct: 61   DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120

Query: 573  FKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXXVKKKPHGGCGSQQPKI 752
            FKQA++++NPK+RLK++LD CKNK+KCEGGD I             KK  GGCG+QQPKI
Sbjct: 121  FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTDEPV--KKSRGGCGAQQPKI 178

Query: 753  TIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQMLGFDPQ 932
            TI+GMKIIAEY+A RKK+D+Q+QL PEPVERKQ L+AERVL +LKRISDE+CQ+LG +P+
Sbjct: 179  TIEGMKIIAEYKAQRKKSDDQEQL-PEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPK 237

Query: 933  FARPDWMILQVLXXXXXXXXXSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQEKNGAPAH 1112
            +ARPDWMILQVL         SVMM+++SRSEDDLTHQLAMIIRHNE LK+QE+NG+PAH
Sbjct: 238  YARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAH 297

Query: 1113 IVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 1292
            I++EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF
Sbjct: 298  IISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 357

Query: 1293 SARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPPGKTGAKY 1472
            SARTVITPDP INIDQLGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPPGKTGAKY
Sbjct: 358  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 417

Query: 1473 IIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 1652
            IIRDDGQRLDLRYLK+SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP
Sbjct: 418  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 477

Query: 1653 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV 1832
            YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIV
Sbjct: 478  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 537

Query: 1833 QDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQVFNLIIPK 2012
            QDTLLGCRKITKRDTFI KDVFMN LMWWE+FDGK+P PTI KP P+WTGKQVFNLIIPK
Sbjct: 538  QDTLLGCRKITKRDTFISKDVFMNTLMWWEDFDGKVPTPTILKPEPLWTGKQVFNLIIPK 597

Query: 2013 QINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHVIWEEVGP 2192
             INLIRYS+WH+ESE+G +T GDT VRIEKGE+L GTLCKKTLG+S+GSLIHVIWEEVGP
Sbjct: 598  PINLIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGP 657

Query: 2193 DAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQLIEKAQE 2372
            DAARKFLGHTQWLVNYWLLQ  FS+GIGDTIADA+TME IN+TIS AK KV+QLI  AQE
Sbjct: 658  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIRDAQE 717

Query: 2373 KKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINIS 2552
            KKLEAEPGRTMM+SFEN+VNQ LN+ARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINIS
Sbjct: 718  KKLEAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINIS 777

Query: 2553 QMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMG 2732
            QMTACVGQQNVEGKRIPYGF  RTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMG
Sbjct: 778  QMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 837

Query: 2733 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 2912
            GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE
Sbjct: 838  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 897

Query: 2913 SQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAEVQKLEAD 3092
            +QKLDSLKMK+ EFD  ++YEFD ++W P YML   +EDLK+IREF+NVF AEVQKLEAD
Sbjct: 898  TQKLDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEAD 957

Query: 3093 RRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAIDKLQERLR 3272
            R QL  EIA +GD+S PLPVNLKRLIWN QK FK+D RRPSDMHPMEIVEAIDKLQERLR
Sbjct: 958  RYQLATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLR 1017

Query: 3273 VVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEARFLQSLV 3452
            VVPG+D LSQEAQKNATL FNILLRST ASKRVL+EY L++EAFEW+VGEIE+RFLQSLV
Sbjct: 1018 VVPGEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLV 1077

Query: 3453 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 3632
            A GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSV
Sbjct: 1078 ASGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSV 1137

Query: 3633 YLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYYEMPD 3812
            YL P+VGKTKERAK+VQCALEYTTLRSVT+ATEVWYDP+PMSTII+EDVDFVKSYYEMPD
Sbjct: 1138 YLNPDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPEPMSTIIDEDVDFVKSYYEMPD 1197

Query: 3813 EDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKLILRI 3992
            E+++ ++ISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD+TCIFNDDNAEKLILRI
Sbjct: 1198 EEVALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRI 1257

Query: 3993 RIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFDENEG 4172
            RIMND+APKGE++D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK+ K+ KFDE+EG
Sbjct: 1258 RIMNDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDESEG 1317

Query: 4173 FTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELRVVIS 4352
            F P++EWMLDTEGVN+LAVMCHEDVDA+RTTSNHLIEVIEVLGIEAVR+ALLDELRVVIS
Sbjct: 1318 FKPNEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVIS 1377

Query: 4353 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAMFAE 4532
            FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA++AE
Sbjct: 1378 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE 1437

Query: 4533 SDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSMSPVL 4712
            +D+LRGVTENIMLGQLAPIGTG C+LYL+D+ML+ AIELQLPSYM+G+DF M+P+ SP+ 
Sbjct: 1438 TDHLRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPARSPIS 1497

Query: 4713 -SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 4823
             +P H+ +MSPSYL SPN+  SP +DAQFSPYVGGMAF
Sbjct: 1498 GTPYHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAF 1535


>ref|XP_004512182.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cicer
            arietinum]
          Length = 1834

 Score = 2664 bits (6906), Expect = 0.0
 Identities = 1306/1538 (84%), Positives = 1425/1538 (92%), Gaps = 1/1538 (0%)
 Frame = +3

Query: 213  MDTRFPFSPAEVAKVKMVQFGIISPDEIRQMSVAQIEHSEIYDNGKPRTGGLSDPRLGTI 392
            MD RFPFSPAEVAKV+MVQFGI+SPDEIRQMSV QIEH E  + GKP+ GGLSDPRLGTI
Sbjct: 1    MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKIGGLSDPRLGTI 60

Query: 393  DRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRILADEEDHR 572
            DRK+KCE+C A MAECPGHFG+LELAKPM+HIGFLKTVLSI+RCVCFNCS+ILADE+DH+
Sbjct: 61   DRKMKCETCTASMAECPGHFGYLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEQDHK 120

Query: 573  FKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXXVKKKPHGGCGSQQPKI 752
            FKQA+++K+PK+RL+++LD CKNKTKCEGGD I             KK  GGCG+QQPKI
Sbjct: 121  FKQALRIKSPKNRLRKILDACKNKTKCEGGDDIDMPGHDTEEPV--KKSRGGCGAQQPKI 178

Query: 753  TIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQMLGFDPQ 932
            TI+GMK+IAEY+A RKK+D+Q+QL PEPVERKQ L+AERVL +LKRISDE+CQ+LG +P+
Sbjct: 179  TIEGMKMIAEYKAQRKKSDDQEQL-PEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPK 237

Query: 933  FARPDWMILQVLXXXXXXXXXSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQEKNGAPAH 1112
            +ARPDW+ILQVL         SVMM+++SRSEDDLTHQLAMIIRHNE LK+QE+NG+PAH
Sbjct: 238  YARPDWLILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAH 297

Query: 1113 IVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 1292
            I++EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF
Sbjct: 298  IISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 357

Query: 1293 SARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPPGKTGAKY 1472
            SARTVITPDP INIDQLGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPPGKTGAKY
Sbjct: 358  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 417

Query: 1473 IIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 1652
            IIRDDGQRLDLRYLK+SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP
Sbjct: 418  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 477

Query: 1653 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV 1832
            YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIV
Sbjct: 478  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 537

Query: 1833 QDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQVFNLIIPK 2012
            QD+LLGCRKITKRDTFI KDVFMNILMWWE+FDGK+P PTI KP P+WTGKQVFNLIIPK
Sbjct: 538  QDSLLGCRKITKRDTFISKDVFMNILMWWEDFDGKVPTPTILKPEPMWTGKQVFNLIIPK 597

Query: 2013 QINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHVIWEEVGP 2192
            QINLIRYS+WHNE+EKG +T GDT VRIEKGE+L GTLCKKTLG+S+GSLIHVIWEEVGP
Sbjct: 598  QINLIRYSSWHNENEKGPITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGP 657

Query: 2193 DAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQLIEKAQE 2372
            DAARKFLGHTQWLVNYWLLQ  FS+GIGDTIADA+TME IN+TIS AK KV+QLI +AQE
Sbjct: 658  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISQAKEKVKQLIREAQE 717

Query: 2373 KKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINIS 2552
            KKLEAEPGRTMMESFEN+VNQ LN+ARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINIS
Sbjct: 718  KKLEAEPGRTMMESFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINIS 777

Query: 2553 QMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMG 2732
            QMTACVGQQNVEGKRIP+GF  RTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMG
Sbjct: 778  QMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 837

Query: 2733 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 2912
            GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE
Sbjct: 838  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 897

Query: 2913 SQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAEVQKLEAD 3092
            +QKLDSLKMK+ +FD  ++YEFD ++W P YML   +EDLK+IREF+NVF AEVQKL+AD
Sbjct: 898  TQKLDSLKMKKADFDRAFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLDAD 957

Query: 3093 RRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAIDKLQERLR 3272
            R QL  EIA +GD+S PLPVNLKRLIWN QK FK+D RRPSDMHPMEIVEAIDKLQERL+
Sbjct: 958  RFQLATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLK 1017

Query: 3273 VVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEARFLQSLV 3452
            VVPGDD LSQEAQKNATL FNILLRST ASKRVL+EY L++EAFEW+VGEIE+RFLQSLV
Sbjct: 1018 VVPGDDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLV 1077

Query: 3453 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 3632
            A GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSV
Sbjct: 1078 ASGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSV 1137

Query: 3633 YLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYYEMPD 3812
            YLKPEV KTKERAK+VQCALEYTTLRSVT+ATEVWYDPDPMSTIIEEDVDFVKSYYEMPD
Sbjct: 1138 YLKPEVCKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPD 1197

Query: 3813 EDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKLILRI 3992
            E+++ ++ISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD+TCIFNDDNAEKLILRI
Sbjct: 1198 EEVALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRI 1257

Query: 3993 RIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFDENEG 4172
            RIMND+APKGE++D + EDD FLK+IESNMLT+M+LRGI DINKVFIK+ KI KFDENEG
Sbjct: 1258 RIMNDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIADINKVFIKNTKIQKFDENEG 1317

Query: 4173 FTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELRVVIS 4352
            F P +EWMLDTEGVN+LAVMCHEDVDA RTTSNHLIEVIEVLGIEAVR++LLDELRVVIS
Sbjct: 1318 FKPYEEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVIS 1377

Query: 4353 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAMFAE 4532
            FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA++AE
Sbjct: 1378 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE 1437

Query: 4533 SDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSMSPV- 4709
            +DYLRGVTENIMLGQLAPIGTG C+L L+D+ML+ AIELQLPSYMEG+DF M+P  SP+ 
Sbjct: 1438 TDYLRGVTENIMLGQLAPIGTGECALLLNDEMLKNAIELQLPSYMEGLDFGMTPGRSPIS 1497

Query: 4710 LSPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 4823
             +P H+ +MSPSYL SPN+  SP  DAQFSPYVGGMAF
Sbjct: 1498 ATPYHEGLMSPSYLLSPNLRLSPTNDAQFSPYVGGMAF 1535


>gb|EMJ04257.1| hypothetical protein PRUPE_ppa000093mg [Prunus persica]
          Length = 1844

 Score = 2662 bits (6900), Expect = 0.0
 Identities = 1305/1538 (84%), Positives = 1423/1538 (92%), Gaps = 1/1538 (0%)
 Frame = +3

Query: 213  MDTRFPFSPAEVAKVKMVQFGIISPDEIRQMSVAQIEHSEIYDNGKPRTGGLSDPRLGTI 392
            MD RFPFSPAEVAKV+ VQFGI+SPDEIRQMSV QIEHSE    GKP+T GLSDPRLGTI
Sbjct: 1    MDIRFPFSPAEVAKVRCVQFGILSPDEIRQMSVVQIEHSETMLGGKPKTAGLSDPRLGTI 60

Query: 393  DRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRILADEEDHR 572
            DRK+KCE+C A MAECPGHFGHLELAKPM+HIGF+KTVLSI+RCVCFNCS+IL DE+DH+
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILVDEDDHK 120

Query: 573  FKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXXVKKKPHGGCGSQQPKI 752
            FKQA+++K+PK+RLK++LD CKNKTKC+GGD I             KK  GGCG+QQPK+
Sbjct: 121  FKQALRIKSPKNRLKKILDACKNKTKCDGGDEIDVQGQESEEPV--KKSRGGCGAQQPKL 178

Query: 753  TIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQMLGFDPQ 932
            +I+GMK+ AEY+A RKK+D+Q+QL PEPVERKQ LTAERVL++LKRISDE+ Q+LG +P+
Sbjct: 179  SIEGMKMNAEYKAQRKKSDDQEQL-PEPVERKQTLTAERVLSVLKRISDEDSQLLGLNPK 237

Query: 933  FARPDWMILQVLXXXXXXXXXSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQEKNGAPAH 1112
            +ARPDWMILQVL         SVMM+++SRSEDDLTHQLAMIIRHNE L++QE+NG+PAH
Sbjct: 238  YARPDWMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAH 297

Query: 1113 IVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 1292
            I++EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF
Sbjct: 298  IISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 357

Query: 1293 SARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPPGKTGAKY 1472
            SARTVITPDPNINIDQLGVPWSIALNLTYPE VTPYNIERLKELVE GPHPPPGKTGAKY
Sbjct: 358  SARTVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKY 417

Query: 1473 IIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 1652
            IIRDDGQRLDLRYLK+SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP
Sbjct: 418  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 477

Query: 1653 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV 1832
            YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIV
Sbjct: 478  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 537

Query: 1833 QDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQVFNLIIPK 2012
            QDTLLGCRKITKRDTFIEKDVFMNILMWWE+FDGK+PAP I KPRP+WTGKQVFNLIIPK
Sbjct: 538  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPK 597

Query: 2013 QINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHVIWEEVGP 2192
            QINL R SAWH+E+E G +T GDT VRIEKGE+L GTLCKK LG+S+GSLIHVIWEEVGP
Sbjct: 598  QINLQRTSAWHSEAESGNITPGDTFVRIEKGELLAGTLCKKALGTSTGSLIHVIWEEVGP 657

Query: 2193 DAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQLIEKAQE 2372
            DAARKFLGHTQWLVNYWLLQ  FS+GIGDTIADAATMEKINETIS AK +V+ LI KAQ 
Sbjct: 658  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNEVKDLISKAQS 717

Query: 2373 KKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINIS 2552
            K+LEAEPGRTMM+SFEN+VNQVLN+ARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINIS
Sbjct: 718  KQLEAEPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 777

Query: 2553 QMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMG 2732
            QMTACVGQQNVEGKRIPYGF  RTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMG
Sbjct: 778  QMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 837

Query: 2733 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 2912
            GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE
Sbjct: 838  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 897

Query: 2913 SQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAEVQKLEAD 3092
            SQKLDSLKMK+ EFD T+ YE D ++W+P+YML  ++EDLK+IREF+NVF+AEVQKLE D
Sbjct: 898  SQKLDSLKMKKSEFDKTFSYELDDENWNPDYMLHEHVEDLKTIREFRNVFDAEVQKLETD 957

Query: 3093 RRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAIDKLQERLR 3272
            R QLG EIA +GDNSWPLPVNLKRLIWN QK FKID RR SDMHPMEIVEAIDKLQERL+
Sbjct: 958  RLQLGTEIAVTGDNSWPLPVNLKRLIWNAQKTFKIDFRRTSDMHPMEIVEAIDKLQERLK 1017

Query: 3273 VVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEARFLQSLV 3452
            VVPGDD LS EAQKNATLFF+ILLRST ASKRVL EY LT+EAFEW++GEIE+RFLQSLV
Sbjct: 1018 VVPGDDLLSVEAQKNATLFFSILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLV 1077

Query: 3453 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 3632
            APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSV
Sbjct: 1078 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSV 1137

Query: 3633 YLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYYEMPD 3812
            YLKPE  KTKERAKNVQCALEYTTLRSVT+ATEVWYDPDPMSTIIEEDVDFV SYYEMPD
Sbjct: 1138 YLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNSYYEMPD 1197

Query: 3813 EDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKLILRI 3992
            E+++PD+ISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD+TCIFNDDNAEKLILRI
Sbjct: 1198 EEVNPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRI 1257

Query: 3993 RIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFDENEG 4172
            RIMN +APKGE+ D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK  K+NKFD NEG
Sbjct: 1258 RIMNAEAPKGELVDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNKFDPNEG 1317

Query: 4173 FTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELRVVIS 4352
            F   QEWMLDTEGVN+LAV+CH+DVDA RTTSNHLIE++E+LGIEAVR++LLDELRVVIS
Sbjct: 1318 FKAEQEWMLDTEGVNLLAVLCHDDVDARRTTSNHLIEILEILGIEAVRRSLLDELRVVIS 1377

Query: 4353 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAMFAE 4532
            FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA+FAE
Sbjct: 1378 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE 1437

Query: 4533 SDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSMSPVL 4712
            +DYLRGVTENIMLGQLAPIGTG C+LYL+D+ML+ AIELQLPSYM+G+DF M+PS SPV 
Sbjct: 1438 TDYLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMDGLDFGMTPSRSPVS 1497

Query: 4713 -SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 4823
             +P H+ MMSP+YL SPN+  SPI+DAQFSPYVGGMAF
Sbjct: 1498 GTPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535


>ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X1
            [Glycine max] gi|571435633|ref|XP_006573537.1| PREDICTED:
            DNA-directed RNA polymerase II subunit 1-like isoform X2
            [Glycine max]
          Length = 1827

 Score = 2662 bits (6899), Expect = 0.0
 Identities = 1302/1538 (84%), Positives = 1423/1538 (92%), Gaps = 1/1538 (0%)
 Frame = +3

Query: 213  MDTRFPFSPAEVAKVKMVQFGIISPDEIRQMSVAQIEHSEIYDNGKPRTGGLSDPRLGTI 392
            MD RFPFSPAEVAKV+MVQFGI+SPDEIRQMSV QIEH E  + GKP+ GGLSDPRLGTI
Sbjct: 1    MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60

Query: 393  DRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRILADEEDHR 572
            DRKLKCE+C A MAECPGHFGHLELAKPM+HIGFLKTVL+I+RCVCFNCS+ILADE DH+
Sbjct: 61   DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120

Query: 573  FKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXXVKKKPHGGCGSQQPKI 752
            FKQA++++NPK+RLK++LD CKNK+KCEGGD I             KK  GGCG+QQPKI
Sbjct: 121  FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTEESV--KKSRGGCGAQQPKI 178

Query: 753  TIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQMLGFDPQ 932
            TI+GMK+IAEY+A RKK+D+Q+QL PEPVERKQ L+AERVL +LKRISDE+CQ+LG +P+
Sbjct: 179  TIEGMKMIAEYKAQRKKSDDQEQL-PEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPK 237

Query: 933  FARPDWMILQVLXXXXXXXXXSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQEKNGAPAH 1112
            +ARPDWMILQVL         SVMM+++SRSEDDLTHQLAMIIRHNE LK+QE+NG+PAH
Sbjct: 238  YARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAH 297

Query: 1113 IVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 1292
            I++EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF
Sbjct: 298  IISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 357

Query: 1293 SARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPPGKTGAKY 1472
            SARTVITPDP INIDQLGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPPGKTGAKY
Sbjct: 358  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 417

Query: 1473 IIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 1652
            IIRDDGQRLDLRYLK+SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP
Sbjct: 418  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 477

Query: 1653 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV 1832
            YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIV
Sbjct: 478  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 537

Query: 1833 QDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQVFNLIIPK 2012
            QDTLLGCRKITKRDTFI KDVFMNILMWWE+FDGK+PAP I KP P+WTGKQVFNLIIPK
Sbjct: 538  QDTLLGCRKITKRDTFISKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPK 597

Query: 2013 QINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHVIWEEVGP 2192
            QINLIRYS+WH+ESE+G +T GDT VRIEKGE+L GTLCKKTLG+ SG LIHVIWEEVGP
Sbjct: 598  QINLIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTYSGGLIHVIWEEVGP 657

Query: 2193 DAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQLIEKAQE 2372
            DAARKFLGHTQWLVNYWLLQ  FS+GIGDTIADA+TME IN+TIS AK KV+QLI +A E
Sbjct: 658  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAHE 717

Query: 2373 KKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINIS 2552
            KKLEAEPGR+MM+SFEN+VNQ LN+ARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINIS
Sbjct: 718  KKLEAEPGRSMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINIS 777

Query: 2553 QMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMG 2732
            QMTACVGQQNVEGKRIPYGF  RTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMG
Sbjct: 778  QMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDLGPESRGFVENSYLRGLTPQEFFFHAMG 837

Query: 2733 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 2912
            GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE
Sbjct: 838  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 897

Query: 2913 SQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAEVQKLEAD 3092
             Q LDSLKMK+ EFD  ++YEFD ++W P YML   +EDLK+IREF+NVF AEVQKLEAD
Sbjct: 898  KQMLDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEAD 957

Query: 3093 RRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAIDKLQERLR 3272
            R QL  EIA +GD+S  LPVNLKRLIWN QK FK+D RRPSDMHPMEIVEAIDKLQERL+
Sbjct: 958  RFQLATEIATTGDSSLFLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLK 1017

Query: 3273 VVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEARFLQSLV 3452
            VVPG+D LSQEAQKNATL FNILLRST ASKRVL+EY L++EAFEW+VGEIE+RFLQSLV
Sbjct: 1018 VVPGEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLV 1077

Query: 3453 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 3632
            A GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSV
Sbjct: 1078 ASGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSV 1137

Query: 3633 YLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYYEMPD 3812
            YL+P+VGKTKERAK+VQCALEYTTLRSVT+ATEVWYDPDPMSTIIEEDVDFVKSYYEMPD
Sbjct: 1138 YLRPDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPD 1197

Query: 3813 EDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKLILRI 3992
            E+++ ++ISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD+TCIFNDDNAEKLILRI
Sbjct: 1198 EEVALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRI 1257

Query: 3993 RIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFDENEG 4172
            RIMND+APKGE++D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK+ K+ KFDEN+G
Sbjct: 1258 RIMNDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENQG 1317

Query: 4173 FTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELRVVIS 4352
            F P++EWMLDTEGVN+LAVMCHEDVD +RTTSNHLIEVIEVLGIEAVR+ALLDELRVVIS
Sbjct: 1318 FKPNEEWMLDTEGVNLLAVMCHEDVDVTRTTSNHLIEVIEVLGIEAVRRALLDELRVVIS 1377

Query: 4353 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAMFAE 4532
            FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA++AE
Sbjct: 1378 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE 1437

Query: 4533 SDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSMSPVL 4712
            +DYLRGVTENIMLGQLAPIGTG C+LYL+D+ML+ AIELQLPSYM+G+DF M+P+ SP+ 
Sbjct: 1438 TDYLRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPARSPIS 1497

Query: 4713 -SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 4823
             +P H+ +MSPSYL SPN+  SP  DAQFSPYVGGMAF
Sbjct: 1498 GTPYHEGLMSPSYLLSPNLRLSPTTDAQFSPYVGGMAF 1535


>ref|XP_006383037.1| DNA-directed RNA polymerase II largest subunit family protein
            [Populus trichocarpa] gi|550338614|gb|ERP60834.1|
            DNA-directed RNA polymerase II largest subunit family
            protein [Populus trichocarpa]
          Length = 1837

 Score = 2661 bits (6897), Expect = 0.0
 Identities = 1303/1541 (84%), Positives = 1429/1541 (92%), Gaps = 4/1541 (0%)
 Frame = +3

Query: 213  MDTRFPFSPAEVAKVKMVQFGIISPDEIRQMSVAQIEHSEIYDNGKPRTGGLSDPRLGTI 392
            MDTRFP+SPAEVAKV+MVQFGI+SPDEIRQMSV QIEHSE  + GKP+ GGLSDPRLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVIQIEHSETTERGKPKPGGLSDPRLGTI 60

Query: 393  DRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRILADEEDHR 572
            DRK+KCE+C A MAECPGHFGHLELAKPM+HIGF+KTVLSI+RCVCFNCS+ILADEEDH+
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 573  FKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXXVKKKPHGGCGSQQPKI 752
            FKQA+K+KNPK RLK++LD CKNKTKCEGGD I             KK  GGCG+QQPK+
Sbjct: 121  FKQALKIKNPKSRLKKILDACKNKTKCEGGDEIDVQGQDNEEPV--KKSRGGCGAQQPKL 178

Query: 753  TIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQMLGFDPQ 932
            TI+GMK+IAEY+  RKK+D+Q+QL PEPVERKQ LTAERVL++LKRISDE+CQ+LG DP+
Sbjct: 179  TIEGMKMIAEYKVQRKKSDDQEQL-PEPVERKQTLTAERVLSVLKRISDEDCQLLGLDPK 237

Query: 933  FARPDWMILQVLXXXXXXXXXSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQEKNGAPAH 1112
            +ARPDWMILQVL         SVMM+++SRSEDDLTHQLAMIIRHNE L++QE++GAPAH
Sbjct: 238  YARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERSGAPAH 297

Query: 1113 IVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 1292
            I++EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF
Sbjct: 298  IISEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 357

Query: 1293 SARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPPGKTGAKY 1472
            SARTVITPDP INID+LGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPPGKTGAKY
Sbjct: 358  SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 417

Query: 1473 IIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 1652
            IIRDDGQRLDLRYLK+SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP
Sbjct: 418  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 477

Query: 1653 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV 1832
            YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIV
Sbjct: 478  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 537

Query: 1833 QDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQVFNLIIPK 2012
            QDTLLGCRKITKRDTFIEKDVFMNILMWWE+FDGK+PAPTI KPRP+WTGKQVFNLIIPK
Sbjct: 538  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTIVKPRPLWTGKQVFNLIIPK 597

Query: 2013 QINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHVIWEEVGP 2192
            QINLIR +AWH +SE+G +T GDT VRIEKGE+L GTLCKKTLG+SSGSLIHVIWEEVGP
Sbjct: 598  QINLIRTAAWHMDSERGMITPGDTLVRIEKGELLSGTLCKKTLGTSSGSLIHVIWEEVGP 657

Query: 2193 DAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQLIEKAQE 2372
            DAARKFLGHTQWLVNYWLLQ  FS+GIGDTIADA+TMEKINETISNAK +V+ LI KAQ 
Sbjct: 658  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMEKINETISNAKNEVKDLIRKAQN 717

Query: 2373 KKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINIS 2552
            K+LEAEPGRTMMESFEN+VNQVLNKARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINIS
Sbjct: 718  KELEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 777

Query: 2553 QMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMG 2732
            QMTACVGQQNVEGKRIPYGF  RTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMG
Sbjct: 778  QMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 837

Query: 2733 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 2912
            GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE
Sbjct: 838  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 897

Query: 2913 SQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAEVQKLEAD 3092
            SQKLDSLKMK+ EFD  ++YEFD + W+P YM+  ++EDL++IRE ++VF+AEVQKLEAD
Sbjct: 898  SQKLDSLKMKKAEFDRVFRYEFDDEDWNPTYMMTDHVEDLRNIRELRDVFDAEVQKLEAD 957

Query: 3093 RRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPR--RPSDMHPMEIVEAIDKLQER 3266
            R QLG EIA +GDN+WP+PVNLKRLIWN QK FKID R  R SD+HPME VEA+DKLQER
Sbjct: 958  RYQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDTRIGRVSDIHPMEAVEAVDKLQER 1017

Query: 3267 LRVVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEARFLQS 3446
            L+VVPGDD LS EAQKNATLFF ILLRSTLASKRVL+EY L++EAF+W++GEIE+RFLQS
Sbjct: 1018 LKVVPGDDLLSVEAQKNATLFFGILLRSTLASKRVLQEYRLSREAFDWVIGEIESRFLQS 1077

Query: 3447 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSL 3626
            LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSL
Sbjct: 1078 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSL 1137

Query: 3627 SVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYYEM 3806
            SVYLKPE  KTKE+AKNVQCALEYTTLRSVT+ATEVWYDPDPMSTIIEED DFVKSYYEM
Sbjct: 1138 SVYLKPEFNKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDADFVKSYYEM 1197

Query: 3807 PDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKLIL 3986
            PDE+++P++ISPWLLRIELNREMM+DKKL+MADIAEKINHEF DD+TCIFNDDNAEKLIL
Sbjct: 1198 PDEEVAPEKISPWLLRIELNREMMIDKKLNMADIAEKINHEFDDDLTCIFNDDNAEKLIL 1257

Query: 3987 RIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFDEN 4166
            RIRIMND+APKGE+ D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK+ K++ FDE+
Sbjct: 1258 RIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNAKVSSFDES 1317

Query: 4167 EGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELRVV 4346
            EGF  ++EWMLDTEGVN+LAVMC+E+VDA +TTSNHLIEVIEV+GIEAVR++LLDELRVV
Sbjct: 1318 EGFKTTEEWMLDTEGVNLLAVMCNENVDARKTTSNHLIEVIEVIGIEAVRRSLLDELRVV 1377

Query: 4347 ISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAMF 4526
            ISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA++
Sbjct: 1378 ISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVY 1437

Query: 4527 AESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSMSP 4706
            AE+DYLRGVTENIMLGQLAPIGTG C+LYL+D+ML+ AIELQLPSYMEG+DF M+P+ SP
Sbjct: 1438 AETDYLRGVTENIMLGQLAPIGTGYCALYLNDEMLKNAIELQLPSYMEGLDFGMTPARSP 1497

Query: 4707 VL-SPNHDPMMSPSYLFSPNMHSSPIAD-AQFSPYVGGMAF 4823
            V  +P HD MMSP  L SPN+  SP  D   FSPYVGGMAF
Sbjct: 1498 VSGTPYHDGMMSP-MLMSPNLRMSPTVDGVAFSPYVGGMAF 1537