BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00002193
         (1960 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A...   659   0.0  
gb|ABO92978.1| putative RNA-dependent RNA-polymerase [Solanum tu...   648   0.0  
gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solan...   648   0.0  
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu...   645   0.0  
gb|AAT38699.2| RNA dependent RNA polymerase family protein [Sola...   645   0.0  
gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tu...   645   0.0  
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   645   0.0  
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   644   0.0  
gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum de...   644   0.0  
gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tu...   644   0.0  
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   642   0.0  
gb|ABI34311.1| RNA dependent RNA polymerase family protein [Sola...   642   0.0  
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis...   641   0.0  
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...   640   0.0  
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps...   640   0.0  
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   639   e-180
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   639   e-180
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper...   638   e-180
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...   637   e-180
gb|EXB32317.1| RNA-dependent RNA polymerase 1 [Morus notabilis]       635   e-179

>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
            gi|548853371|gb|ERN11375.1| hypothetical protein
            AMTR_s00176p00039530 [Amborella trichopoda]
          Length = 1210

 Score =  659 bits (1699), Expect = 0.0
 Identities = 353/657 (53%), Positives = 454/657 (69%), Gaps = 8/657 (1%)
 Frame = -3

Query: 1958 APSVFYKEDS-SSSADDAQGLEYYKHGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKD 1782
            AP +F K  S SS   D+    YYK   D  W+R+ DFT +  IGQ SS+C+ LPNG + 
Sbjct: 252  APRIFQKPLSFSSDIYDSPLFNYYKDFPDEQWVRSIDFTPSCSIGQSSSLCLALPNGTRI 311

Query: 1781 KDIKGTFYNYKVIKGNLSLQMPFFPMPTSRLVXXXXXXXXXXXPYQILYHVNLLVQEGVL 1602
             +I+  F  YK I G  +L+       +  LV           PY+IL+ VN LVQ G L
Sbjct: 312  PNIRENFAYYKEIGGAFNLKTGSSFSHSLHLVPIVHPPDQIKLPYKILFRVNSLVQNGFL 371

Query: 1601 NWPTLKRDFFSLLQPTREKPVHCILSALDEMYYSSPCFNPEKILKKSIHA-RNTRRYADP 1425
              PTL  +F++LL       V   L  +  +  ++ C  P K L++     RN  R   P
Sbjct: 372  VGPTLDTEFYNLLNGLPSPFVERSLEDISRL--TNCCLEPAKWLQEQYKKYRNLPRRPSP 429

Query: 1424 NSY-LDGGLVRIHRAQVTPTKIYLCRPEVNVSNRVIRQFSRYMDDFLRVSFVDEDGKQLH 1248
             +  L+ GLV +HR QVTP+K+Y   PEVNVSNRV+RQFS Y+D+FLR+SF+DED   + 
Sbjct: 430  AAISLEPGLVYVHRVQVTPSKVYFYGPEVNVSNRVLRQFSNYIDNFLRISFIDEDFGSIR 489

Query: 1247 AYDLCRKMSNG-DKLYTRLYQRVVSVLKEGIVIGRKKFEFLAYSNSQLRESSLWMFASNE 1071
            + DL ++M++G ++ +T +Y RV+S LK GIVIG KKFEFLA+S+SQLR++S WMF+  +
Sbjct: 490  STDLSKRMASGAEEKHTTVYGRVLSTLKNGIVIGDKKFEFLAFSSSQLRDNSAWMFSPID 549

Query: 1070 NVTAENIRNWMGDFMSIRNVAKCAARMGQSFSSSRKTLRVLDTEVEDLNDITVGSGNERY 891
             +TA NIR WMGDF  IRNVAKCAARMGQSF SS +TL V   EVE ++DI     N +Y
Sbjct: 550  GITAANIRQWMGDFSGIRNVAKCAARMGQSFGSSTETLNVKPEEVERISDIK----NGKY 605

Query: 890  VFSDGIGKISASLAAEVASICGCTY-TPSAFQIRYGGYKGVVAVDPFSTYKLSLRPSMKK 714
            VFSDGIGKIS   A +VA  CGC+  TPSAFQIRYGGYKGVVAVDP S YKLSLR SM+K
Sbjct: 606  VFSDGIGKISLEFAKKVALKCGCSEKTPSAFQIRYGGYKGVVAVDPTSRYKLSLRGSMRK 665

Query: 713  FDSKDTFVDVLSWTKFRPCFLNRQIITLLSTLGVEDQAFEKLQEEVVSRLDQVLNNKETA 534
            + S +T +DVL+++KF+PCFLNRQ+ITLLSTLGV+D  FE  Q++ VS+LD++L + E+A
Sbjct: 666  YSSNNTKLDVLAYSKFQPCFLNRQVITLLSTLGVQDNVFETKQKDAVSQLDKILVDPESA 725

Query: 533  LEVLQIMGGGEHHDVIVKMLQCGYSPEHEPYLSMILHAFRAAKLLELKVKTRIFVPEGRC 354
             E L++M  GE+ +V+ +ML CGY P+ EP+LSM+L  FR  KL ELK KTRIF+P GR 
Sbjct: 726  FEALELMSPGENVNVLKEMLFCGYLPDSEPFLSMMLQTFRGLKLSELKTKTRIFIPNGRS 785

Query: 353  LMGCLDESGTLEYGEVFVQVTEPQN---SQFDGGDPSQTILRSNKKVITGRVIVAKNPCL 183
            +MGCLDE+G LEYG+VFVQ +   N    +F     +++      +V+ G+VIVAKNPCL
Sbjct: 786  MMGCLDETGILEYGQVFVQFSAIGNRRLHEFGLSKINESGSDQRVRVVVGKVIVAKNPCL 845

Query: 182  HPGDVQILQTVDFPWLHHMVNCVVFPQKGERPHPNECSGSDLDGDLYFICWDESLIP 12
            HPGDV+IL  +D P LHHMVNCVVFPQKG+RPHPNECSGSDLDGD+YF+ WD  LIP
Sbjct: 846  HPGDVRILTAIDVPALHHMVNCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPMLIP 902


>gb|ABO92978.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 935

 Score =  648 bits (1671), Expect = 0.0
 Identities = 329/637 (51%), Positives = 450/637 (70%), Gaps = 7/637 (1%)
 Frame = -3

Query: 1895 YYKHGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSLQ-- 1722
            ++K   D  W+RTTDFT ++ IG  SS+C++   G    + + +F++Y   + N++LQ  
Sbjct: 187  FFKETPDDQWVRTTDFTPSW-IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTG 245

Query: 1721 MPFFPMPTSRLVXXXXXXXXXXXPYQILYHVNLLVQEGVLNWPTLKRDFFSLLQPTREKP 1542
              FF    S LV           PY+IL+ ++ LVQ G +  P L   FF L+ P R   
Sbjct: 246  FTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRN- 304

Query: 1541 VHCILSALDEMYYSSPC-FNPEKILKKSI--HARNTRRYADPNSYLDGGLVRIHRAQVTP 1371
            V CI  AL+++YY   C ++P + L +    + +  +    P+  LD GLV + R  VTP
Sbjct: 305  VACIEQALEKLYYLKECCYDPVRWLTEQYDGYFKGRQPPKSPSITLDDGLVYVRRVLVTP 364

Query: 1370 TKIYLCRPEVNVSNRVIRQFSRYMDDFLRVSFVDEDGKQLHAYDLCRKMSNGDKLYTRLY 1191
             K+Y C PEVNVSNRV+R +S  +D+FLRVSFVDE+ ++L++ +L  K S G+ + T +Y
Sbjct: 365  CKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIRTNIY 424

Query: 1190 QRVVSVLKEGIVIGRKKFEFLAYSNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNV 1011
            +R++S L++G VIG KKFEFLA+S+SQLR++S+WMFAS   +TA +IR+WMGDF  I+NV
Sbjct: 425  ERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTANDIRSWMGDFSQIKNV 484

Query: 1010 AKCAARMGQSFSSSRKTLRVLDTEVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASI 831
            AK AAR GQSF SSR+TL VL  E+E + D+ V   +  YVFSDGIGKISA  A +VAS 
Sbjct: 485  AKYAARFGQSFGSSRETLSVLRHEIEVIPDVKVHGTS--YVFSDGIGKISADFARKVASN 542

Query: 830  CGCTYTPSAFQIRYGGYKGVVAVDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFL 651
            CG  YTPSAFQIRYGGYKGVVAVDP+S+ KLSLR SM K++S +  +DVL W+K++PC+L
Sbjct: 543  CGLQYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCYL 602

Query: 650  NRQIITLLSTLGVEDQAFEKLQEEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQ 471
            NRQ++TLLSTLGV+D   E+ Q+E V +LD +L++   A E L++M  GE+ +++  ML 
Sbjct: 603  NRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLN 662

Query: 470  CGYSPEHEPYLSMILHAFRAAKLLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVT 291
            CGY P+ EP+LSM+L  FRA+KLL+L+ K+RIF+P GR +MGCLDES TLEYG+VFVQ T
Sbjct: 663  CGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFT 722

Query: 290  EPQNSQF-DGGDPSQTILRSN-KKVITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNC 117
               + +F +   P      +N   ++ G V+VAKNPCLHPGD+++L+ VD P LHHMV+C
Sbjct: 723  GAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDC 782

Query: 116  VVFPQKGERPHPNECSGSDLDGDLYFICWDESLIPPQ 6
            VVFPQKG+RPHPNECSGSDLDGD+YF+CWD+ +IPP+
Sbjct: 783  VVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPR 819


>gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solanum demissum]
          Length = 1137

 Score =  648 bits (1671), Expect = 0.0
 Identities = 329/637 (51%), Positives = 450/637 (70%), Gaps = 7/637 (1%)
 Frame = -3

Query: 1895 YYKHGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSLQ-- 1722
            ++K   D  W+RTTDFT ++ IG  SS+C++   G    + + +F++Y   + N++LQ  
Sbjct: 223  FFKETPDDQWVRTTDFTPSW-IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTG 281

Query: 1721 MPFFPMPTSRLVXXXXXXXXXXXPYQILYHVNLLVQEGVLNWPTLKRDFFSLLQPTREKP 1542
              FF    S LV           PY+IL+ ++ LVQ G +  P L   FF L+ P R   
Sbjct: 282  FTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRN- 340

Query: 1541 VHCILSALDEMYYSSPC-FNPEKILKKSI--HARNTRRYADPNSYLDGGLVRIHRAQVTP 1371
            V CI  AL+++YY   C ++P + L +    + +  +    P+  LD GLV + R  VTP
Sbjct: 341  VACIEQALEKLYYLKECCYDPVRWLTEQYDGYFKGRQPPKSPSITLDDGLVYVRRVLVTP 400

Query: 1370 TKIYLCRPEVNVSNRVIRQFSRYMDDFLRVSFVDEDGKQLHAYDLCRKMSNGDKLYTRLY 1191
             K+Y C PEVNVSNRV+R +S  +D+FLRVSFVDE+ ++L++ +L  K S G+ + T +Y
Sbjct: 401  CKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIRTNIY 460

Query: 1190 QRVVSVLKEGIVIGRKKFEFLAYSNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNV 1011
            +R++S L++G VIG KKFEFLA+S+SQLR++S+WMFAS   +TA +IR+WMGDF  I+NV
Sbjct: 461  ERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTANDIRSWMGDFSQIKNV 520

Query: 1010 AKCAARMGQSFSSSRKTLRVLDTEVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASI 831
            AK AAR GQSF SSR+TL VL  E+E + D+ V   +  YVFSDGIGKISA  A +VAS 
Sbjct: 521  AKYAARFGQSFGSSRETLSVLRHEIEVIPDVKVHGTS--YVFSDGIGKISADFARKVASN 578

Query: 830  CGCTYTPSAFQIRYGGYKGVVAVDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFL 651
            CG  YTPSAFQIRYGGYKGVVAVDP+S+ KLSLR SM K++S +  +DVL W+K++PC+L
Sbjct: 579  CGLQYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCYL 638

Query: 650  NRQIITLLSTLGVEDQAFEKLQEEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQ 471
            NRQ++TLLSTLGV+D   E+ Q+E V +LD +L++   A E L++M  GE+ +++  ML 
Sbjct: 639  NRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLN 698

Query: 470  CGYSPEHEPYLSMILHAFRAAKLLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVT 291
            CGY P+ EP+LSM+L  FRA+KLL+L+ K+RIF+P GR +MGCLDES TLEYG+VFVQ T
Sbjct: 699  CGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFT 758

Query: 290  EPQNSQF-DGGDPSQTILRSN-KKVITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNC 117
               + +F +   P      +N   ++ G V+VAKNPCLHPGD+++L+ VD P LHHMV+C
Sbjct: 759  GAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDC 818

Query: 116  VVFPQKGERPHPNECSGSDLDGDLYFICWDESLIPPQ 6
            VVFPQKG+RPHPNECSGSDLDGD+YF+CWD+ +IPP+
Sbjct: 819  VVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPR 855


>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1115

 Score =  645 bits (1665), Expect = 0.0
 Identities = 327/637 (51%), Positives = 449/637 (70%), Gaps = 7/637 (1%)
 Frame = -3

Query: 1895 YYKHGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSLQ-- 1722
            ++K   D  W+RTTDFT ++ IG  SS+C++   G    + + +F++Y   + N++LQ  
Sbjct: 187  FFKETPDDQWVRTTDFTPSW-IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTG 245

Query: 1721 MPFFPMPTSRLVXXXXXXXXXXXPYQILYHVNLLVQEGVLNWPTLKRDFFSLLQPTREKP 1542
              FF    S LV           PY+IL+ ++ LVQ G +  P L   FF L+ P R   
Sbjct: 246  FTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRN- 304

Query: 1541 VHCILSALDEMYYSSPC-FNPEKILKKSI--HARNTRRYADPNSYLDGGLVRIHRAQVTP 1371
            V CI  AL+++YY   C ++P + L +    + +  +    P+  LD GLV + R  VTP
Sbjct: 305  VACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTP 364

Query: 1370 TKIYLCRPEVNVSNRVIRQFSRYMDDFLRVSFVDEDGKQLHAYDLCRKMSNGDKLYTRLY 1191
             K+Y C PEVNVSNRV+R +S  +D+FLRVSFVDE+ ++L++ +L  K S G+ + T +Y
Sbjct: 365  CKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIRTNIY 424

Query: 1190 QRVVSVLKEGIVIGRKKFEFLAYSNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNV 1011
            +R++S L++G VIG KKFEFLA+S+SQLR++S+WMFAS   +T  +IR+WMGDF  I+NV
Sbjct: 425  ERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTTNDIRSWMGDFSQIKNV 484

Query: 1010 AKCAARMGQSFSSSRKTLRVLDTEVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASI 831
            AK AAR+GQSF SSR+TL VL  E+E + D+ V   +  YVFSDGIGKISA  A  VAS 
Sbjct: 485  AKYAARLGQSFGSSRETLSVLRHEIEVIPDVKVHGTS--YVFSDGIGKISADFARRVASK 542

Query: 830  CGCTYTPSAFQIRYGGYKGVVAVDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFL 651
            CG  YTPSAFQIRYGGYKGVVAVDP+S+ KLSLR SM K++S +  +DVL W+K++PC+L
Sbjct: 543  CGLQYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYL 602

Query: 650  NRQIITLLSTLGVEDQAFEKLQEEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQ 471
            NRQ++TLLSTLGV+D   E+ Q+E V +LD +L++   A E L++M  GE+ +++  ML 
Sbjct: 603  NRQLVTLLSTLGVKDDVLEQKQKEAVHQLDAILHDSLKAQEALELMSPGENTNILKAMLN 662

Query: 470  CGYSPEHEPYLSMILHAFRAAKLLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVT 291
            CGY P+ EP+LSM+L  FRA+KLL+L+ ++RIF+P GR +MGCLDES TLEYG+VFVQ T
Sbjct: 663  CGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFT 722

Query: 290  EPQNSQF-DGGDPSQTILRSN-KKVITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNC 117
               + +F +   P      +N   ++ G V+VAKNPCLHPGD+++L+ VD P LHHMV+C
Sbjct: 723  GAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDC 782

Query: 116  VVFPQKGERPHPNECSGSDLDGDLYFICWDESLIPPQ 6
            VVFPQKG+RPHPNECSGSDLDGD+YF+CWD+ +IPP+
Sbjct: 783  VVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPR 819


>gb|AAT38699.2| RNA dependent RNA polymerase family protein [Solanum demissum]
          Length = 963

 Score =  645 bits (1665), Expect = 0.0
 Identities = 327/637 (51%), Positives = 449/637 (70%), Gaps = 7/637 (1%)
 Frame = -3

Query: 1895 YYKHGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSLQ-- 1722
            ++K   D  W+RTTDFT ++ IG  SS+C++   G    + + +F++Y   + N++LQ  
Sbjct: 35   FFKETPDDQWVRTTDFTPSW-IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTG 93

Query: 1721 MPFFPMPTSRLVXXXXXXXXXXXPYQILYHVNLLVQEGVLNWPTLKRDFFSLLQPTREKP 1542
              FF    S LV           PY+IL+ ++ LVQ G +  P L   FF L+ P R   
Sbjct: 94   FTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRN- 152

Query: 1541 VHCILSALDEMYYSSPC-FNPEKILKKSI--HARNTRRYADPNSYLDGGLVRIHRAQVTP 1371
            V CI  AL+++YY   C ++P + L +    + +  +    P+  LD GLV + R  VTP
Sbjct: 153  VACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTP 212

Query: 1370 TKIYLCRPEVNVSNRVIRQFSRYMDDFLRVSFVDEDGKQLHAYDLCRKMSNGDKLYTRLY 1191
             K+Y C PEVNVSNRV+R +S  +D+FLRVSFVDE+ ++L++ +L  K S G+ + T +Y
Sbjct: 213  CKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIRTNIY 272

Query: 1190 QRVVSVLKEGIVIGRKKFEFLAYSNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNV 1011
            +R++S L++G VIG KKFEFLA+S+SQLR++S+WMFAS   +T  +IR+WMGDF  I+NV
Sbjct: 273  ERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTTNDIRSWMGDFSQIKNV 332

Query: 1010 AKCAARMGQSFSSSRKTLRVLDTEVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASI 831
            AK AAR+GQSF SSR+TL VL  E+E + D+ V   +  YVFSDGIGKISA  A  VAS 
Sbjct: 333  AKYAARLGQSFGSSRETLSVLRHEIEVIPDVKVHGTS--YVFSDGIGKISADFARRVASK 390

Query: 830  CGCTYTPSAFQIRYGGYKGVVAVDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFL 651
            CG  YTPSAFQIRYGGYKGVVAVDP+S+ KLSLR SM K++S +  +DVL W+K++PC+L
Sbjct: 391  CGLQYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYL 450

Query: 650  NRQIITLLSTLGVEDQAFEKLQEEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQ 471
            NRQ++TLLSTLGV+D   E+ Q+E V +LD +L++   A E L++M  GE+ +++  ML 
Sbjct: 451  NRQLVTLLSTLGVKDDVLEQKQKEAVHQLDAILHDSLKAQEALELMSPGENTNILKAMLN 510

Query: 470  CGYSPEHEPYLSMILHAFRAAKLLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVT 291
            CGY P+ EP+LSM+L  FRA+KLL+L+ ++RIF+P GR +MGCLDES TLEYG+VFVQ T
Sbjct: 511  CGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFT 570

Query: 290  EPQNSQF-DGGDPSQTILRSN-KKVITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNC 117
               + +F +   P      +N   ++ G V+VAKNPCLHPGD+++L+ VD P LHHMV+C
Sbjct: 571  GAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDC 630

Query: 116  VVFPQKGERPHPNECSGSDLDGDLYFICWDESLIPPQ 6
            VVFPQKG+RPHPNECSGSDLDGD+YF+CWD+ +IPP+
Sbjct: 631  VVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPR 667


>gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 841

 Score =  645 bits (1664), Expect = 0.0
 Identities = 327/637 (51%), Positives = 448/637 (70%), Gaps = 7/637 (1%)
 Frame = -3

Query: 1895 YYKHGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSLQ-- 1722
            ++K   D  W+RTTDF  ++ IG  SS+C++   G    + + +F++Y   + N++LQ  
Sbjct: 187  FFKETPDDQWVRTTDFAPSW-IGLSSSLCLQFRRGVHLPNFQESFFHYTERENNITLQTG 245

Query: 1721 MPFFPMPTSRLVXXXXXXXXXXXPYQILYHVNLLVQEGVLNWPTLKRDFFSLLQPTREKP 1542
              FF    S LV           PY+IL+ ++ LVQ G +  P L   FF L+ P R   
Sbjct: 246  FTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRN- 304

Query: 1541 VHCILSALDEMYYSSPC-FNPEKILKKSI--HARNTRRYADPNSYLDGGLVRIHRAQVTP 1371
            V CI  AL+++YY   C ++P + L +    + +  +    P+  LD GLV + R  VTP
Sbjct: 305  VACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTP 364

Query: 1370 TKIYLCRPEVNVSNRVIRQFSRYMDDFLRVSFVDEDGKQLHAYDLCRKMSNGDKLYTRLY 1191
             K+Y C PEVNVSNRV+R +S  +D+FLRVSFVDE+ ++L++ DL  K S G+ + T +Y
Sbjct: 365  CKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIRTNIY 424

Query: 1190 QRVVSVLKEGIVIGRKKFEFLAYSNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNV 1011
            +R++S L++G VIG KKFEFLA+S+SQLR++S+WMFAS   +TA +IR WMGDF  I+NV
Sbjct: 425  ERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNV 484

Query: 1010 AKCAARMGQSFSSSRKTLRVLDTEVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASI 831
            AK AAR+GQSF SS++TL VL  E+E + D+ V   +  YVFSDGIGKISA  A  VAS 
Sbjct: 485  AKYAARLGQSFGSSKETLSVLRHEIEVIPDVKVHGTS--YVFSDGIGKISADFARRVASK 542

Query: 830  CGCTYTPSAFQIRYGGYKGVVAVDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFL 651
            CG  YTPSAFQIRYGGYKGVVAVDP+S+ KLSLR SM K++S +  +DVL W+K++PC+L
Sbjct: 543  CGLQYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYL 602

Query: 650  NRQIITLLSTLGVEDQAFEKLQEEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQ 471
            NRQ++TLLSTLGV+D   E+ Q+E V +LD +L++   A E L++M  GE+ +++  ML 
Sbjct: 603  NRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLN 662

Query: 470  CGYSPEHEPYLSMILHAFRAAKLLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVT 291
            CGY P+ EP+LSM+L  FRA+KLL+L+ ++RIF+P GR +MGCLDES TLEYG+VFVQ T
Sbjct: 663  CGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFT 722

Query: 290  EPQNSQF-DGGDPSQTILRSN-KKVITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNC 117
               + +F +   P      +N   ++ G V+VAKNPCLHPGD+++L+ VD P LHHMV+C
Sbjct: 723  GAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDC 782

Query: 116  VVFPQKGERPHPNECSGSDLDGDLYFICWDESLIPPQ 6
            VVFPQKG+RPHPNECSGSDLDGD+YF+CWD+ +IPP+
Sbjct: 783  VVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPR 819


>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
          Length = 1115

 Score =  645 bits (1663), Expect = 0.0
 Identities = 328/637 (51%), Positives = 448/637 (70%), Gaps = 7/637 (1%)
 Frame = -3

Query: 1895 YYKHGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSLQ-- 1722
            ++K   D  W+RTTDF  ++ IG  SS+C++   G    + + +F++Y   + N++LQ  
Sbjct: 187  FFKETPDDQWVRTTDFAPSW-IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTG 245

Query: 1721 MPFFPMPTSRLVXXXXXXXXXXXPYQILYHVNLLVQEGVLNWPTLKRDFFSLLQPTREKP 1542
              FF    S LV           PY+IL+ ++ LVQ G +  P L  +FF L+ P R   
Sbjct: 246  FTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVNFFRLVDPQRRN- 304

Query: 1541 VHCILSALDEMYYSSPC-FNPEKILKKSI--HARNTRRYADPNSYLDGGLVRIHRAQVTP 1371
            V CI  AL+++YY   C ++P + L +    + +  +    P+  LD GLV + R  VTP
Sbjct: 305  VACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSINLDDGLVYVRRVLVTP 364

Query: 1370 TKIYLCRPEVNVSNRVIRQFSRYMDDFLRVSFVDEDGKQLHAYDLCRKMSNGDKLYTRLY 1191
             K+Y C PEVNVSNRV+R +S  +D+FLRVSFVDE+ ++L++ DL  K S G+ + T +Y
Sbjct: 365  CKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIRTNIY 424

Query: 1190 QRVVSVLKEGIVIGRKKFEFLAYSNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNV 1011
             R++S L++G VIG KKFEFLA+S+SQLR++S+WMFAS   +TA +IR WMGDF  I+NV
Sbjct: 425  VRILSTLQKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWMGDFSQIKNV 484

Query: 1010 AKCAARMGQSFSSSRKTLRVLDTEVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASI 831
            AK AAR+GQSF SS++TL VL  E+E + D+ V   +  YVFSDGIGKISA  A  VAS 
Sbjct: 485  AKYAARLGQSFGSSKETLSVLRHEIEIIPDVKVHGTS--YVFSDGIGKISADFARRVASK 542

Query: 830  CGCTYTPSAFQIRYGGYKGVVAVDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFL 651
            CG  YTPSAFQIRYGGYKGVVAVDP+S+ KLSLR SM K++S +  +DVL W+K++PCFL
Sbjct: 543  CGLQYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCFL 602

Query: 650  NRQIITLLSTLGVEDQAFEKLQEEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQ 471
            NRQ++TLLSTLGV+D   E+ Q+E V +LD +L++   A E L++M  GE+ +++  ML 
Sbjct: 603  NRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLN 662

Query: 470  CGYSPEHEPYLSMILHAFRAAKLLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVT 291
            CGY P+ EP+LSM+L  FRA+KLL+L+ ++RIF+P GR +MGCLDES TLEYG+VFVQ T
Sbjct: 663  CGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFT 722

Query: 290  EPQNSQF-DGGDPSQTILRSN-KKVITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNC 117
               + +F +   P      +N   ++ G V+VAKNPCLHPGD+++L+ VD P LHHMV+C
Sbjct: 723  GSGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDC 782

Query: 116  VVFPQKGERPHPNECSGSDLDGDLYFICWDESLIPPQ 6
            VVFPQKG+RPHPNECSGSDLDGD+YF+CWD+ +IPP+
Sbjct: 783  VVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPR 819


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  644 bits (1662), Expect = 0.0
 Identities = 337/659 (51%), Positives = 449/659 (68%), Gaps = 8/659 (1%)
 Frame = -3

Query: 1958 APSVFYKEDSSSSA-DDAQGLEYYKHGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKD 1782
            AP +F K   S     ++    ++K   D  W+RTTDFT +  IGQ + +CMELP   + 
Sbjct: 178  APRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLEL 237

Query: 1781 KDIKGTFYNYKVIKGNLSLQMPFFPMPTSRLVXXXXXXXXXXXPYQILYHVNLLVQEGVL 1602
             D K  F  YK  +    L+       +  LV           PY+IL+ +NLLVQ G +
Sbjct: 238  PDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCV 297

Query: 1601 NWPTLKRDFFSLLQPTREK-PVHCILSALDEMYYSSPC-FNPEKILKKSIHARNTRRY-- 1434
              P L  +F+ L+ P R    + CI  ALD++Y+   C + P + L        T R   
Sbjct: 298  AGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKP 357

Query: 1433 ADPNSYLDGGLVRIHRAQVTPTKIYLCRPEVNVSNRVIRQFSRYMDDFLRVSFVDEDGKQ 1254
            + P   LD GLV +HR QVTP+++Y C PE+NVSNRV+R F R +D+FLR+SF+DED  +
Sbjct: 358  SSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDK 417

Query: 1253 LHAYDLCRKMSNG-DKLYTRLYQRVVSVLKEGIVIGRKKFEFLAYSNSQLRESSLWMFAS 1077
            +H+ DL  + S+  D   TR+Y R++S L+ GI+IG +KFEFLA+S+SQLRESS WMFAS
Sbjct: 418  IHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS 477

Query: 1076 NENVTAENIRNWMGDFMSIRNVAKCAARMGQSFSSSRKTLRVLDTEVEDLNDITVGSGNE 897
               +TA  IR WMG+F  IRNVAK AAR+GQSFSSS++TL V   E+E + D+ +  G  
Sbjct: 478  RYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKT 537

Query: 896  RYVFSDGIGKISASLAAEVASICGCTYTP-SAFQIRYGGYKGVVAVDPFSTYKLSLRPSM 720
            +YVFSDGIGK+SA  A +VAS CG    P SAFQIRYGGYKGVVA DP S+ KLSLR SM
Sbjct: 538  KYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSM 597

Query: 719  KKFDSKDTFVDVLSWTKFRPCFLNRQIITLLSTLGVEDQAFEKLQEEVVSRLDQVLNNKE 540
            +K++S+ T +DVL+W+K++PCFLNRQ+I+LLSTLG+ D+ FEK Q E V +LD +L +  
Sbjct: 598  RKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 657

Query: 539  TALEVLQIMGGGEHHDVIVKMLQCGYSPEHEPYLSMILHAFRAAKLLELKVKTRIFVPEG 360
             A E L++M  GE+ +++ ++L CGY P+ EP+LSM+L  FRA+KLLEL+ KTRIF+P G
Sbjct: 658  KAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNG 717

Query: 359  RCLMGCLDESGTLEYGEVFVQVTEPQNSQFDGGDPSQTILRSNKK-VITGRVIVAKNPCL 183
            R +MGCLDE+ TL YG+VFVQ++     Q  G     +  RS ++ ++ G V+VAKNPCL
Sbjct: 718  RSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCL 777

Query: 182  HPGDVQILQTVDFPWLHHMVNCVVFPQKGERPHPNECSGSDLDGDLYFICWDESLIPPQ 6
            HPGDV++L+ V+ P LHHMV+CVVFPQKG RPHPNECSGSDLDGD+YF+CWD+ LIPPQ
Sbjct: 778  HPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQ 836


>gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1180

 Score =  644 bits (1661), Expect = 0.0
 Identities = 327/637 (51%), Positives = 447/637 (70%), Gaps = 7/637 (1%)
 Frame = -3

Query: 1895 YYKHGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSLQ-- 1722
            ++K   D  W+RTTDF  ++ IG  SS+C++   G    + +  F++Y   + N++LQ  
Sbjct: 153  FFKETPDDQWVRTTDFAPSW-IGLSSSLCLQFRRGVHLPNFQEIFFHYTERENNITLQTG 211

Query: 1721 MPFFPMPTSRLVXXXXXXXXXXXPYQILYHVNLLVQEGVLNWPTLKRDFFSLLQPTREKP 1542
              FF    S LV           PY+IL+ ++ LVQ G +  P L   FF L+ P R   
Sbjct: 212  FTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALDVYFFRLVDPQRRN- 270

Query: 1541 VHCILSALDEMYYSSPC-FNPEKILKKSI--HARNTRRYADPNSYLDGGLVRIHRAQVTP 1371
            V CI  AL+++YY   C ++P + L +    + +  +    P+  LD GLV + R  VTP
Sbjct: 271  VACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTP 330

Query: 1370 TKIYLCRPEVNVSNRVIRQFSRYMDDFLRVSFVDEDGKQLHAYDLCRKMSNGDKLYTRLY 1191
             K+Y C PEVNVSNRV+R +S  +D+FLRVSFVDE+ ++L++ DL  K S G+ + T +Y
Sbjct: 331  CKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIRTNIY 390

Query: 1190 QRVVSVLKEGIVIGRKKFEFLAYSNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNV 1011
            +R++S L++G VIG KKFEFLA+S+SQLR++S+WMFAS   +TA +IR WMGDF  I+NV
Sbjct: 391  ERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNV 450

Query: 1010 AKCAARMGQSFSSSRKTLRVLDTEVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASI 831
            AK AAR+GQSF SS++TL VL  E+E + D+ V   +  YVFSDGIGKISA  A  VAS 
Sbjct: 451  AKYAARLGQSFGSSKETLSVLRHEIEVIPDVKVHGTS--YVFSDGIGKISADFARRVASK 508

Query: 830  CGCTYTPSAFQIRYGGYKGVVAVDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFL 651
            CG  YTPSAFQIRYGGYKGVVAVDP+S+ KLSLR SM K++S +  +DVL W+K++PC+L
Sbjct: 509  CGLQYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYL 568

Query: 650  NRQIITLLSTLGVEDQAFEKLQEEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQ 471
            NRQ++TLLSTLGV+D   E+ Q+E V +LD +L++   A E L++M  GE+ +++  ML 
Sbjct: 569  NRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLN 628

Query: 470  CGYSPEHEPYLSMILHAFRAAKLLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVT 291
            CGY P+ EP+LSM+L  FRA+KLL+L+ ++RIF+P GR +MGCLDES TLEYG+VFVQ T
Sbjct: 629  CGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFT 688

Query: 290  EPQNSQF-DGGDPSQTILRSN-KKVITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNC 117
               + +F +   P      +N   ++ G V+VAKNPCLHPGD+++L+ VD P LHHMV+C
Sbjct: 689  GAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDC 748

Query: 116  VVFPQKGERPHPNECSGSDLDGDLYFICWDESLIPPQ 6
            VVFPQKG+RPHPNECSGSDLDGD+YF+CWD+ +IPP+
Sbjct: 749  VVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPR 785


>gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1065

 Score =  644 bits (1660), Expect = 0.0
 Identities = 327/637 (51%), Positives = 449/637 (70%), Gaps = 7/637 (1%)
 Frame = -3

Query: 1895 YYKHGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSLQ-- 1722
            ++K   D  W+RTTDF  ++ IG  SS+C++   G    + + +F++Y   + N++LQ  
Sbjct: 186  FFKETPDDQWVRTTDFAPSW-IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTG 244

Query: 1721 MPFFPMPTSRLVXXXXXXXXXXXPYQILYHVNLLVQEGVLNWPTLKRDFFSLLQPTREKP 1542
              FF    S LV           PY+IL+ ++ LVQ G +  P+L   FF L+ P R   
Sbjct: 245  FTFFISQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPSLNVYFFRLVDPQRRN- 303

Query: 1541 VHCILSALDEMYYSSPC-FNPEKILKKSI--HARNTRRYADPNSYLDGGLVRIHRAQVTP 1371
            V CI  AL+++YY   C ++P + L +    + +  +    P+  LD GLV + R  VTP
Sbjct: 304  VACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTP 363

Query: 1370 TKIYLCRPEVNVSNRVIRQFSRYMDDFLRVSFVDEDGKQLHAYDLCRKMSNGDKLYTRLY 1191
             K+Y C PEVNVSNRV+R +S  +D+FLRVSFVDE+ ++L++ +L  K S G+ + T +Y
Sbjct: 364  CKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIRTNIY 423

Query: 1190 QRVVSVLKEGIVIGRKKFEFLAYSNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNV 1011
            +R++S +++G VIG KKFEFLA+S+SQLR++S+WMFAS   +TA +IR WMGDF  I+NV
Sbjct: 424  ERILSTMQKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNV 483

Query: 1010 AKCAARMGQSFSSSRKTLRVLDTEVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASI 831
            AK AAR+GQSF SS++TL VL  E+E + D+ V   +  YVFSDGIGKISA  A  VAS 
Sbjct: 484  AKYAARLGQSFGSSKETLSVLRHEIEVIPDVKVHGTS--YVFSDGIGKISADFARRVASK 541

Query: 830  CGCTYTPSAFQIRYGGYKGVVAVDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFL 651
            CG  YTPSAFQIRYGGYKGVVAVDP+S+ KLSLR SM K++S +  +DVL W+K++PC+L
Sbjct: 542  CGLQYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYL 601

Query: 650  NRQIITLLSTLGVEDQAFEKLQEEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQ 471
            NRQ+ITLLSTLGV+D   E+ Q+E V +LD +L++   A E L++M  GE+ +++  ML 
Sbjct: 602  NRQLITLLSTLGVKDDILEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLN 661

Query: 470  CGYSPEHEPYLSMILHAFRAAKLLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVT 291
            CGY P+ EP+LSM+L  FRA+KLL+L+ K+RIF+P GR +MGCLDES TLEYG+VFVQ T
Sbjct: 662  CGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFT 721

Query: 290  EPQNSQF-DGGDPSQTILRSN-KKVITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNC 117
               + +F +   P      +N   ++ G V+VAKNPCLHPGD+++L+ VD P LHHMV+C
Sbjct: 722  GAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDC 781

Query: 116  VVFPQKGERPHPNECSGSDLDGDLYFICWDESLIPPQ 6
            VVFPQKG+RPHPNECSGSDLDGD+YF+CWD+ +IPP+
Sbjct: 782  VVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPR 818


>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
            tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
            tuberosum]
          Length = 1115

 Score =  642 bits (1655), Expect = 0.0
 Identities = 327/637 (51%), Positives = 447/637 (70%), Gaps = 7/637 (1%)
 Frame = -3

Query: 1895 YYKHGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSLQ-- 1722
            ++K   D  W+RTTDF  ++ IG  SS+C++   G    + + +F++Y   + N++LQ  
Sbjct: 187  FFKETPDDQWVRTTDFAPSW-IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTG 245

Query: 1721 MPFFPMPTSRLVXXXXXXXXXXXPYQILYHVNLLVQEGVLNWPTLKRDFFSLLQPTREKP 1542
              FF    S LV           PY+IL+ ++ LVQ G +  P L   FF L+ P R   
Sbjct: 246  FTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRN- 304

Query: 1541 VHCILSALDEMYYSSPC-FNPEKILKKSI--HARNTRRYADPNSYLDGGLVRIHRAQVTP 1371
            V CI  AL+++YY   C ++P + L +    + +  +    P+  LD GLV + R  VTP
Sbjct: 305  VACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSINLDDGLVYVRRVLVTP 364

Query: 1370 TKIYLCRPEVNVSNRVIRQFSRYMDDFLRVSFVDEDGKQLHAYDLCRKMSNGDKLYTRLY 1191
             K+Y C PEVNVSNRV+R +S  +D+FLRVSFVDE+ ++L++ DL  K S G+ + T +Y
Sbjct: 365  CKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIRTNIY 424

Query: 1190 QRVVSVLKEGIVIGRKKFEFLAYSNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNV 1011
            +R++S L++G VIG KKFEFLA+S+SQLR++S+WMFAS   +TA +IR WMGDF  I+NV
Sbjct: 425  ERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWMGDFSQIKNV 484

Query: 1010 AKCAARMGQSFSSSRKTLRVLDTEVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASI 831
            AK AAR+GQSF SS +TL VL  E+E + D+ V   +  YVFSDGIGKISA  A  VAS 
Sbjct: 485  AKYAARLGQSFGSSTETLSVLRHEIEVIPDVKVHGTS--YVFSDGIGKISADFARRVASK 542

Query: 830  CGCTYTPSAFQIRYGGYKGVVAVDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFL 651
            CG  +TPSAFQIRYGGYKGVVAVDP+S+ KLSLR SM K++S +  +DVL W+K++PC+L
Sbjct: 543  CGLQHTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYL 602

Query: 650  NRQIITLLSTLGVEDQAFEKLQEEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQ 471
            NRQ++TLLSTLGV+D   E+ Q+E V +LD +L++   A E L++M  GE+ +++  ML 
Sbjct: 603  NRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLN 662

Query: 470  CGYSPEHEPYLSMILHAFRAAKLLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVT 291
            CGY P+ EP+LSM+L  FRA+KLL+L+ K+RIF+P GR +MGCLDES TLEYG+VFVQ T
Sbjct: 663  CGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRLMMGCLDESRTLEYGQVFVQFT 722

Query: 290  EPQNSQF-DGGDPSQTILRSN-KKVITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNC 117
               + +F +   P      +N   ++ G V+VAKNPCLHPGD+++L+ VD P LHHMV+C
Sbjct: 723  GSGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDC 782

Query: 116  VVFPQKGERPHPNECSGSDLDGDLYFICWDESLIPPQ 6
            VVFPQKG+RPHPNECSGSDLDGD+YF+CWD+ +IPP+
Sbjct: 783  VVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPR 819


>gb|ABI34311.1| RNA dependent RNA polymerase family protein [Solanum demissum]
          Length = 963

 Score =  642 bits (1655), Expect = 0.0
 Identities = 327/637 (51%), Positives = 446/637 (70%), Gaps = 7/637 (1%)
 Frame = -3

Query: 1895 YYKHGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSLQ-- 1722
            ++K   D  W+RTTDF  ++ IG  SS+C++   G    + +  F++Y   + N++LQ  
Sbjct: 35   FFKETPDDQWVRTTDFAPSW-IGLSSSLCLQFRRGVHLPNFQEKFFHYAERENNITLQTG 93

Query: 1721 MPFFPMPTSRLVXXXXXXXXXXXPYQILYHVNLLVQEGVLNWPTLKRDFFSLLQPTREKP 1542
              FF    S LV           PY+IL+ ++ LVQ G +  P L   FF L+ P R   
Sbjct: 94   FTFFISQKSSLVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRN- 152

Query: 1541 VHCILSALDEMYYSSPC-FNPEKILKKSI--HARNTRRYADPNSYLDGGLVRIHRAQVTP 1371
            V CI  AL+++YY   C ++P + L +    + +  +    P+  LD GLV + R  VTP
Sbjct: 153  VACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTP 212

Query: 1370 TKIYLCRPEVNVSNRVIRQFSRYMDDFLRVSFVDEDGKQLHAYDLCRKMSNGDKLYTRLY 1191
             K+Y C PEVNVSNRV+R +S  +D+FLRVSFVDE+ ++L++ +L  K S G+ + T +Y
Sbjct: 213  CKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIRTNIY 272

Query: 1190 QRVVSVLKEGIVIGRKKFEFLAYSNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNV 1011
            +R++S L++G VIG KK EFLA+S+SQLR++S+WMFAS   +TA +IR WMGDF  I+NV
Sbjct: 273  ERILSTLRKGFVIGDKKIEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNV 332

Query: 1010 AKCAARMGQSFSSSRKTLRVLDTEVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASI 831
            AK AAR+GQSF SS++TL VL  E+E + D+ V   +  YVFSDGIGKISA  A  VAS 
Sbjct: 333  AKYAARLGQSFGSSKETLSVLRHEIEVIPDVKVHGTS--YVFSDGIGKISADFARRVASK 390

Query: 830  CGCTYTPSAFQIRYGGYKGVVAVDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFL 651
            CG  YTPSAFQIRYGGYKGVVAVDP+S+ KLSLR SM K++S +  +DVL W+K++PC+L
Sbjct: 391  CGLQYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCYL 450

Query: 650  NRQIITLLSTLGVEDQAFEKLQEEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQ 471
            NRQ+ITLLSTLGV+D   E+ Q+E V +LD +L++   A E L++M  GE+ +++  ML 
Sbjct: 451  NRQLITLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLN 510

Query: 470  CGYSPEHEPYLSMILHAFRAAKLLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVT 291
            CGY P+ EP+LSM+L  FRA+KLL+L+ K+RIF+P GR +MGCLDES TLEYG+VFVQ T
Sbjct: 511  CGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFT 570

Query: 290  EPQNSQF-DGGDPSQTILRSN-KKVITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNC 117
               + +F +   P      +N   ++ G V+VAKNPCLHPGD+++L+ VD P LHHMV+C
Sbjct: 571  GAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDC 630

Query: 116  VVFPQKGERPHPNECSGSDLDGDLYFICWDESLIPPQ 6
            VVFPQKG+RPHPNECSGSDLDGD+YF+CWD+ +IPP+
Sbjct: 631  VVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPR 667


>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
            gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
            1a [Cucumis sativus]
          Length = 1130

 Score =  641 bits (1653), Expect = 0.0
 Identities = 330/652 (50%), Positives = 438/652 (67%), Gaps = 3/652 (0%)
 Frame = -3

Query: 1958 APSVFYK-EDSSSSADDAQGLEYYKHGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKD 1782
            AP ++ K   +S    D   L ++K  SD  W+RTTDFT +  IGQ SS+C++LPNG + 
Sbjct: 176  APRIYKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQL 235

Query: 1781 KDIKGTFYNYKVIKGNLSLQMPFFPMPTSRLVXXXXXXXXXXXPYQILYHVNLLVQEGVL 1602
               K  F  Y+  +    L          R +           PY+IL+ +N LVQ G +
Sbjct: 236  PPFKQNFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCI 295

Query: 1601 NWPTLKRDFFSLLQPTREKPVHCILSALDEMYYSSPC-FNPEKILKKSIHARNTRRYADP 1425
             WP L   F+ L++      +  +  AL+++++   C ++P   L +     +      P
Sbjct: 296  PWPLLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSP 355

Query: 1424 NSYLDGGLVRIHRAQVTPTKIYLCRPEVNVSNRVIRQFSRYMDDFLRVSFVDEDGKQLHA 1245
               LD GLV + R Q+TP K++ C PEVNVSNRV+R FS+Y+D+FLRVSFVDE+  ++ +
Sbjct: 356  VISLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRS 415

Query: 1244 YDLCRKMSN-GDKLYTRLYQRVVSVLKEGIVIGRKKFEFLAYSNSQLRESSLWMFASNEN 1068
             DL  +MS+  +   T +Y+R++SVLK GIVIG K F+FLA+S+SQLR++SLWMFAS  +
Sbjct: 416  TDLLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPD 475

Query: 1067 VTAENIRNWMGDFMSIRNVAKCAARMGQSFSSSRKTLRVLDTEVEDLNDITVGSGNERYV 888
            + A  IR WMGDF  I+N AK AAR+GQSF SS + L V   E E + DI V  G  +YV
Sbjct: 476  IDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYV 535

Query: 887  FSDGIGKISASLAAEVASICGCTYTPSAFQIRYGGYKGVVAVDPFSTYKLSLRPSMKKFD 708
            FSDGIGKIS+  A EVA+ CG    PSAFQIRYGGYKGVVAVDP+ST KLSLR SM KF+
Sbjct: 536  FSDGIGKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFE 595

Query: 707  SKDTFVDVLSWTKFRPCFLNRQIITLLSTLGVEDQAFEKLQEEVVSRLDQVLNNKETALE 528
            S +T +DVL  +K++PCFLNRQ+ITL+STLGV D+ FEK Q E V +LD +L +   A E
Sbjct: 596  SDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQE 655

Query: 527  VLQIMGGGEHHDVIVKMLQCGYSPEHEPYLSMILHAFRAAKLLELKVKTRIFVPEGRCLM 348
             L++M  GE+ +++ +ML+CGY P+ EPYLSM+L  FRA+KLLEL+ K+RIF+P GR +M
Sbjct: 656  ALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMM 715

Query: 347  GCLDESGTLEYGEVFVQVTEPQNSQFDGGDPSQTILRSNKKVITGRVIVAKNPCLHPGDV 168
            GCLDE+ TLEYG+VFVQ++  ++           I R +  VI G V VAKNPCLHPGDV
Sbjct: 716  GCLDETRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDV 775

Query: 167  QILQTVDFPWLHHMVNCVVFPQKGERPHPNECSGSDLDGDLYFICWDESLIP 12
            ++L+ V+ P L+HMV+CVVFPQKG RPHPNECSGSDLDGD+YF+CWD  LIP
Sbjct: 776  RVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIP 827


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score =  640 bits (1652), Expect = 0.0
 Identities = 342/660 (51%), Positives = 451/660 (68%), Gaps = 9/660 (1%)
 Frame = -3

Query: 1958 APSVFYKE-DSSSSADDAQGLEYYKHGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKD 1782
            AP ++ ++  SSS+  +   L Y++   D  W+RTTDFT + GIG  SS+C+ELPN  + 
Sbjct: 176  APRIYERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQL 235

Query: 1781 KDIKGTFYNYKVIKGNLSLQMPFFPMPTSRLVXXXXXXXXXXXPYQILYHVNLLVQEGVL 1602
             +    F+ YK  +G   L+          LV           PY IL+ VNLLVQ G L
Sbjct: 236  PNFNENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCL 295

Query: 1601 NWPTLKRDFFSLLQPTREKPVHCILSALDEMYYSSPC-FNPEKIL----KKSIHARNTRR 1437
                L   F+ L+ P R  PV CI  AL+++Y+   C + P K      KK + + N  R
Sbjct: 296  AGSMLDDIFYRLVDPNR-MPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPR 354

Query: 1436 YADPNSYLDGGLVRIHRAQVTPTKIYLCRPEVNVSNRVIRQFSRYMDDFLRVSFVDEDGK 1257
               P   LD GLV +++ Q+TP K++ C PEVNVSNRV+RQ+   +D+FLRVSFVDE+ +
Sbjct: 355  --SPVLSLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELE 412

Query: 1256 QLHAYDLCRKMSNGDKLY-TRLYQRVVSVLKEGIVIGRKKFEFLAYSNSQLRESSLWMFA 1080
            ++H+ D+  + S+ ++L  T +Y R++S L+ GIVIG KKFEFLA+S+SQLRE+S WMFA
Sbjct: 413  KIHSTDVSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFA 472

Query: 1079 SNENVTAENIRNWMGDFMSIRNVAKCAARMGQSFSSSRKTLRVLDTEVEDLNDITVGSGN 900
            S   +TA +IR WMG F  IRNVA+ AAR+GQSF SS +TL V   E+E + DI V  G 
Sbjct: 473  SRLGLTAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGG 532

Query: 899  ERYVFSDGIGKISASLAAEVASICGCT-YTPSAFQIRYGGYKGVVAVDPFSTYKLSLRPS 723
             RY+FSDGIGKISA  A +VA  CGC  +TPSAFQIRY GYKGVVAVDP S+ KLSLR S
Sbjct: 533  TRYLFSDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRS 592

Query: 722  MKKFDSKDTFVDVLSWTKFRPCFLNRQIITLLSTLGVEDQAFEKLQEEVVSRLDQVLNNK 543
            M K++S++T +DVL+ +K++PCFLNRQ+ITLLSTLGV D  FE+ Q E V +LD +L + 
Sbjct: 593  MFKYESENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDP 652

Query: 542  ETALEVLQIMGGGEHHDVIVKMLQCGYSPEHEPYLSMILHAFRAAKLLELKVKTRIFVPE 363
              A E L++M  GE+ +++ +ML CGY P+ EP+LSM+L  FRA+KLLEL+ KTRIF+P 
Sbjct: 653  LRAQEALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN 712

Query: 362  GRCLMGCLDESGTLEYGEVFVQVTEPQ-NSQFDGGDPSQTILRSNKKVITGRVIVAKNPC 186
            GR +MGCLDE+ TLE+G+VFV+ +  +  + +D  D      R    +I G V+VAKNPC
Sbjct: 713  GRSMMGCLDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGRGQCYLIKGSVVVAKNPC 772

Query: 185  LHPGDVQILQTVDFPWLHHMVNCVVFPQKGERPHPNECSGSDLDGDLYFICWDESLIPPQ 6
            LHPGD++IL+ VD P LHHMV+CVVFPQKG RPHPNECSGSDLDGD+YF+CWD  LIP Q
Sbjct: 773  LHPGDLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQ 832


>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
            gi|482575337|gb|EOA39524.1| hypothetical protein
            CARUB_v10008144mg [Capsella rubella]
          Length = 1107

 Score =  640 bits (1650), Expect = 0.0
 Identities = 340/657 (51%), Positives = 447/657 (68%), Gaps = 6/657 (0%)
 Frame = -3

Query: 1958 APSVFYKEDSSSSADDAQGLEYYKHGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDK 1779
            AP +F KED   +      +++Y  GSD  WIRTTDFT +  IGQ ++ C+ELP      
Sbjct: 176  APKIFEKEDQPVNFLFGM-MDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHVHVP 234

Query: 1778 DIKGTFYNYKVIKGNLSLQMP--FFPMPTSRLVXXXXXXXXXXXPYQILYHVNLLVQEGV 1605
            D +  F NY   + +  L      +    ++LV           P++IL+ VN LVQ   
Sbjct: 235  DFRENFANYAEHRASTFLIQSGSSYSSNANKLVPVVDPPPGFDLPFEILFKVNTLVQNAC 294

Query: 1604 LNWPTLKRDFFSLLQPTREKPVHCILSALDEMYYSSPC-FNPEKILKKSIHARNTRRYA- 1431
            L  P L  +F+ LL P +      I  +L+++++   C + P + L++     N+ +   
Sbjct: 295  LPGPALDLEFYQLLNPKKYDRA-LIDHSLEKLFHLGECCYEPARWLREEYKKLNSSKKLP 353

Query: 1430 -DPNSYLDGGLVRIHRAQVTPTKIYLCRPEVNVSNRVIRQFSRYMDDFLRVSFVDEDGKQ 1254
              P   LD GLV I+R  VTP ++Y   PEVNVSNRV+R +S Y+++FLR+SFVDED ++
Sbjct: 354  LSPTISLDDGLVYIYRVLVTPARVYFLGPEVNVSNRVLRHYSEYINNFLRISFVDEDLEK 413

Query: 1253 LHAYDLCRKMSNGDKLYTRLYQRVVSVLKEGIVIGRKKFEFLAYSNSQLRESSLWMFASN 1074
            +H+ DL  + S   +  T+LY R+ SVL++GIVIG KKFEFLA+S+SQLRE+S WMFA  
Sbjct: 414  IHSMDLSPRSSTQRR--TKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPR 471

Query: 1073 ENVTAENIRNWMGDFMSIRNVAKCAARMGQSFSSSRKTLRVLDTEVEDLNDITVGSGNER 894
            + +TA +IR WMGDF  IRNVAK AAR+GQSFSSSR+TL V   E+E + D+     + R
Sbjct: 472  DRLTAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEAMYLDTR 531

Query: 893  YVFSDGIGKISASLAAEVASICGCT-YTPSAFQIRYGGYKGVVAVDPFSTYKLSLRPSMK 717
            YVFSDGIGKISA  A +VA  CG T ++PSAFQIRYGGYKGVVAVDP S+ KLSLR SM 
Sbjct: 532  YVFSDGIGKISAEFARKVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMS 591

Query: 716  KFDSKDTFVDVLSWTKFRPCFLNRQIITLLSTLGVEDQAFEKLQEEVVSRLDQVLNNKET 537
            KF+S +T +DVL+W+K++PC+LNRQIITLLSTLGV+D  FEK Q EVV RLD +L +   
Sbjct: 592  KFESGNTKLDVLAWSKYQPCYLNRQIITLLSTLGVKDNVFEKKQREVVDRLDAILTDPLE 651

Query: 536  ALEVLQIMGGGEHHDVIVKMLQCGYSPEHEPYLSMILHAFRAAKLLELKVKTRIFVPEGR 357
            A E L +M  GE+ +++ ++L CGY P+ EP+LSM+L  FRA+KLLEL+ KTRIF+P GR
Sbjct: 652  AHEALGLMAPGENTNILKQLLLCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFIPGGR 711

Query: 356  CLMGCLDESGTLEYGEVFVQVTEPQNSQFDGGDPSQTILRSNKKVITGRVIVAKNPCLHP 177
             +MGCLDE+ TLEYG+V VQ + P              +   + +ITG V+VAKNPCLHP
Sbjct: 712  SMMGCLDETRTLEYGQVVVQYSNP-------------TMPGKRYIITGPVVVAKNPCLHP 758

Query: 176  GDVQILQTVDFPWLHHMVNCVVFPQKGERPHPNECSGSDLDGDLYFICWDESLIPPQ 6
            GDV++LQ V+ P L+HMV+CVVFPQKG RPHPNECSGSDLDGD+YFICWD  LIPP+
Sbjct: 759  GDVRVLQAVNVPALYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFICWDHELIPPR 815


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score =  639 bits (1648), Expect = e-180
 Identities = 341/660 (51%), Positives = 445/660 (67%), Gaps = 9/660 (1%)
 Frame = -3

Query: 1958 APSVFYKEDSSSSADDAQGLEYYKHGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDK 1779
            AP ++ K        D   L Y+K   D  W+R  DFT +  IGQ S++C+ELP+G++  
Sbjct: 175  APQIYEK--------DVSALSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLP 226

Query: 1778 DIKGTFYNYKVIKGNLSLQMPFFPMPTSRLVXXXXXXXXXXXPYQILYHVNLLVQEGVLN 1599
            +    F  YK       L+          LV           P++IL+ +N LVQ G L+
Sbjct: 227  NFCENFARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGCLS 286

Query: 1598 WPTLKRDFFSLLQPTREKPVHCILSALDEMYYSSPC-FNPEKILKKSIHARNTRRYA-DP 1425
             PTL  +FF  + P R   +  I  AL+++YY   C + P + L +      +++ A  P
Sbjct: 287  GPTLDTNFFRWVDPQRIN-ISFIEHALEKLYYLEECCYEPVRWLHEQYRTYISKQVAGSP 345

Query: 1424 NSYLDGGLVRIHRAQVTPTKIYLCRPEVNVSNRVIRQFSRYMDDFLRVSFVDEDGKQLHA 1245
               LD GLV + R Q+TP K+Y C PEVNVSNRV+R +   +D+FLRVSF+DE+ +++H+
Sbjct: 346  AISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIHS 405

Query: 1244 YDLCRKMSNGDKLYTRLYQRVVSVLKEGIVIGRKKFEFLAYSNSQLRESSLWMFASNENV 1065
              +  +MSN  +  T +Y+R++S+L+ GIVIG KKF+FLA S+SQLR++S WMFAS   +
Sbjct: 406  TVISPRMSNEGRR-TGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRPGL 464

Query: 1064 TAENIRNWMGDFMSIRNVAKCAARMGQSFSSSRKTLRVLDTEVEDLNDITVGSGNERYVF 885
            TA +IR+ MGDF  IRNVAK AAR+GQSFSSS++TL+V   E+E + DI        YVF
Sbjct: 465  TAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDGTTYVF 524

Query: 884  SDGIGKISASLAAEVASICGC-TYTPSAFQIRYGGYKGVVAVDPFSTYKLSLRPSMKKFD 708
            SDGIGKISA LA  VA  CGC   TPSAFQIRYGGYKGVVAVDP S+ KLSLR SM K++
Sbjct: 525  SDGIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYE 584

Query: 707  SKDTFVDVLSWTKFRPCFLNRQIITLLSTLGVEDQAFEKLQEEVVSRLDQVLNNKETALE 528
            S++T +DVLSW+K+RPCFLNRQ+ITLLSTLGV+D  FEK Q E V +LD +L +   A E
Sbjct: 585  SENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLRAQE 644

Query: 527  VLQIMGGGEHHDVIVKMLQCGYSPEHEPYLSMILHAFRAAKLLELKVKTRIFVPEGRCLM 348
             L++M  GE+ +++ +ML CGY P+ EP+LSM+L  FRAAKLLEL+ KTRIFVP GR +M
Sbjct: 645  ALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMM 704

Query: 347  GCLDESGTLEYGEVFVQVTEPQNSQFDG------GDPSQTILRSNKKVITGRVIVAKNPC 186
            GCLDE+ TLEYGEVFVQ++     Q  G      G  S      +  ++ G+V+VAKNPC
Sbjct: 705  GCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGS----HHDNFILEGKVVVAKNPC 760

Query: 185  LHPGDVQILQTVDFPWLHHMVNCVVFPQKGERPHPNECSGSDLDGDLYFICWDESLIPPQ 6
            LHPGDV+IL  VD P LHHMV+CVVFPQKG RPHP+ECSGSDLDGD+YF+CWD  LIPP+
Sbjct: 761  LHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPPR 820


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  639 bits (1648), Expect = e-180
 Identities = 333/638 (52%), Positives = 438/638 (68%), Gaps = 8/638 (1%)
 Frame = -3

Query: 1895 YYKHGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSLQMP 1716
            Y+K   D  W+R  DFT +  IGQ  ++C+ELP G++  + +  F  YK   G   L+  
Sbjct: 190  YFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPNFRENFAYYKENDGKFILESG 249

Query: 1715 FFPMPTSRLVXXXXXXXXXXXPYQILYHVNLLVQEGVLNWPTLKRDFFSLLQPTREKPVH 1536
                    LV           P+QIL+ +N LVQ G L+ PTL   FF L+ P R  P+ 
Sbjct: 250  SSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSGPTLDTSFFRLVDPERF-PIS 308

Query: 1535 CILSALDEMYYSSPC-FNPEKILKKSIHARNTRRYA-DPNSYLDGGLVRIHRAQVTPTKI 1362
             I  AL+++Y+   C + P + L +       +  A  P   LD GLV + R Q+TP K+
Sbjct: 309  FIEHALEKLYHLKECCYEPVRWLSEQYRTYVKKPVAGSPAISLDTGLVYVRRVQITPCKV 368

Query: 1361 YLCRPEVNVSNRVIRQFSRYMDDFLRVSFVDEDGKQLHAYDLCRKMSNGDKLYTRLYQRV 1182
            Y C PEVNVSNRV+R +   +D+FLRVSF+DE+ +++H+  +  +MS   +  T +Y+R+
Sbjct: 369  YFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHSTVISPRMSKEGRR-TGVYRRI 427

Query: 1181 VSVLKEGIVIGRKKFEFLAYSNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKC 1002
            +S+L+ GIVIG KKF+FLA+S+SQLR++S WMFAS   +TA  IR+WMGDF  IRNVAK 
Sbjct: 428  LSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPGLTAAEIRSWMGDFSQIRNVAKY 487

Query: 1001 AARMGQSFSSSRKTLRVLDTEVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASICGC 822
            AAR+GQSFSSS++TL+V   E+E++ DI +  G   YVFSDGIGKIS  LA  VA  CGC
Sbjct: 488  AARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTTYVFSDGIGKISPQLAHRVAIKCGC 547

Query: 821  -TYTPSAFQIRYGGYKGVVAVDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNR 645
             + TPSAFQIRYGGYKGVVAVDP S+ KLSLR SM K++S +T +DVL+W+K++P FLNR
Sbjct: 548  KSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESDNTNLDVLAWSKYQPSFLNR 607

Query: 644  QIITLLSTLGVEDQAFEKLQEEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCG 465
            Q+ITLLSTLGV+D  FEK Q   V +LD +L +   A E L++M  GE+ +V+ +ML CG
Sbjct: 608  QLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQEALELMSPGENTNVLKEMLMCG 667

Query: 464  YSPEHEPYLSMILHAFRAAKLLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEP 285
            Y P+ EP+LSM+L  FRAAKLLEL+ KTRIFVP GR +MGCLDE+ TLEYGEVFVQ++  
Sbjct: 668  YKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGT 727

Query: 284  QNSQFDGGDPSQTILRSNKK-----VITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVN 120
               Q  G      + R +       ++ G+++VAKNPCLHPGDV++L  V+ P LHHMV+
Sbjct: 728  GGRQSFG---DSLMFRGSGSHHDNFILEGKIVVAKNPCLHPGDVRVLWAVNVPTLHHMVD 784

Query: 119  CVVFPQKGERPHPNECSGSDLDGDLYFICWDESLIPPQ 6
            CVVFPQKG+RPHPNECSGSDLDGD+YF+CWD  LIPPQ
Sbjct: 785  CVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQ 822


>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
            gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
            [Solanum lycopersicum]
          Length = 1114

 Score =  638 bits (1646), Expect = e-180
 Identities = 326/637 (51%), Positives = 446/637 (70%), Gaps = 7/637 (1%)
 Frame = -3

Query: 1895 YYKHGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSLQ-- 1722
            ++K   D  W+RTTDF  ++ IG  SS+C++   G +  + + +F++Y   + N++LQ  
Sbjct: 187  FFKETPDDQWVRTTDFPPSW-IGLSSSLCLQFRRGVRLPNFEESFFHYAERENNITLQTG 245

Query: 1721 MPFFPMPTSRLVXXXXXXXXXXXPYQILYHVNLLVQEGVLNWPTLKRDFFSLLQPTREKP 1542
              FF    S LV           PY+IL+ ++ LVQ G +  P L   FF L+ P R + 
Sbjct: 246  FTFFVSQKSALVPNVQPPEGISIPYKILFKISSLVQHGCIPGPALNVYFFRLVDP-RRRN 304

Query: 1541 VHCILSALDEMYYSSPC-FNPEKILKKSI--HARNTRRYADPNSYLDGGLVRIHRAQVTP 1371
            V CI  AL+++YY   C ++P + L +    + +  +    P+  LD GLV + R  VTP
Sbjct: 305  VACIEHALEKLYYIKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTP 364

Query: 1370 TKIYLCRPEVNVSNRVIRQFSRYMDDFLRVSFVDEDGKQLHAYDLCRKMSNGDKLYTRLY 1191
             K+Y C PEVNVSNRV+R +S  +D+FLRVSFVDE+ ++L++ DL  K S G  + T +Y
Sbjct: 365  CKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGSGVRTNIY 424

Query: 1190 QRVVSVLKEGIVIGRKKFEFLAYSNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNV 1011
            +R++S L++G VIG KKFEFLA+S+SQLR++S+WMFAS   +TA +IR WMGDF  I+NV
Sbjct: 425  ERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRAWMGDFSQIKNV 484

Query: 1010 AKCAARMGQSFSSSRKTLRVLDTEVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASI 831
            AK AAR+GQSF SSR+TL VL  E+E + D+ V   +  YVFSDGIGKIS   A  VAS 
Sbjct: 485  AKYAARLGQSFGSSRETLSVLRHEIEVIPDVKVHGTS--YVFSDGIGKISGDFAHRVASK 542

Query: 830  CGCTYTPSAFQIRYGGYKGVVAVDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFL 651
            CG  YTPSAFQIRYGGYKGVV VDP S+ KLSLR SM K++S +  +DVL W+K++PC+L
Sbjct: 543  CGLQYTPSAFQIRYGGYKGVVGVDPDSSMKLSLRKSMSKYESDNIKLDVLGWSKYQPCYL 602

Query: 650  NRQIITLLSTLGVEDQAFEKLQEEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQ 471
            NRQ+ITLLSTLGV+D+  E+ Q+E V +LD +L++   A E L++M  GE+ +++  ML 
Sbjct: 603  NRQLITLLSTLGVKDEVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLN 662

Query: 470  CGYSPEHEPYLSMILHAFRAAKLLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVT 291
            CGY P+ EP+LSM+L  FRA+KLL+L+ ++RIF+P GR +MGCLDES TLEYG+VFVQ T
Sbjct: 663  CGYKPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFT 722

Query: 290  EPQNSQF-DGGDPSQTILRSNKK-VITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNC 117
               + +F D   P      +N   ++ G V+VAKNPCLHPGD+++L+ V+   LHHMV+C
Sbjct: 723  GAGHGEFSDDLHPFNNSRSTNSNFILKGNVVVAKNPCLHPGDIRVLKAVNVRALHHMVDC 782

Query: 116  VVFPQKGERPHPNECSGSDLDGDLYFICWDESLIPPQ 6
            VVFPQKG+RPHPNECSGSDLDGD+YF+CWD+ +IPP+
Sbjct: 783  VVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPR 819


>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
            gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
            [Nicotiana glutinosa]
          Length = 1117

 Score =  637 bits (1643), Expect = e-180
 Identities = 332/660 (50%), Positives = 445/660 (67%), Gaps = 9/660 (1%)
 Frame = -3

Query: 1958 APSVFYK-EDSSSSADDAQGLEYYKHGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKD 1782
            AP ++ + EDS  S        ++K   D  W+RTTDFT ++ IG  SS+C+E  NG + 
Sbjct: 173  APRIYKRLEDSCYS--------FFKETPDDQWVRTTDFTPSW-IGLSSSLCLEFHNGVRL 223

Query: 1781 KDIKGTFYNYKVIKGNLSLQMPF---FPMPTSRLVXXXXXXXXXXXPYQILYHVNLLVQE 1611
             +   +F+ YK     + LQ  F   F      LV           PY+IL+ ++ L+Q 
Sbjct: 224  PNFSESFFYYKESANQVILQTGFTFSFSQKKLALVPIVHLPEGIELPYKILFKISSLIQH 283

Query: 1610 GVLNWPTLKRDFFSLLQPTREKPVHCILSALDEMYYSSPC-FNPEKILKKSIHARNTRRY 1434
            G      L  +FF L+ P R + + CI  AL+++YY   C ++P + L +       RR 
Sbjct: 284  GCFPGLALNFNFFQLVDP-RRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKRRQ 342

Query: 1433 A--DPNSYLDGGLVRIHRAQVTPTKIYLCRPEVNVSNRVIRQFSRYMDDFLRVSFVDEDG 1260
                P+  LD GLV + R  VTP K+Y C PEVNVSNRV+R +S  +D+FLRVSFVDE+ 
Sbjct: 343  LPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEW 402

Query: 1259 KQLHAYDLCRKMSNGDKLYTRLYQRVVSVLKEGIVIGRKKFEFLAYSNSQLRESSLWMFA 1080
            +++H+ DL  + S G+ + T +Y R++S L+ G VIG KKFEFLA+S+SQLR++S+WMFA
Sbjct: 403  EKIHSTDLLPRASTGNGVRTDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFA 462

Query: 1079 SNENVTAENIRNWMGDFMSIRNVAKCAARMGQSFSSSRKTLRVLDTEVEDLNDITVGSGN 900
            S   +TA +IR WMG F  IRNVAK AAR+GQSF SSR+TL V   EVE + D+      
Sbjct: 463  SRPGLTANDIRTWMGGFQQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVVCSLHG 522

Query: 899  ERYVFSDGIGKISASLAAEVASICGCTYTPSAFQIRYGGYKGVVAVDPFSTYKLSLRPSM 720
              Y+FSDGIGKISA  A  VA  CG  YTPS FQIRYGGYKGVVAVDP+S+ KLSLR SM
Sbjct: 523  TNYIFSDGIGKISADFARRVAVKCGLQYTPSCFQIRYGGYKGVVAVDPYSSMKLSLRNSM 582

Query: 719  KKFDSKDTFVDVLSWTKFRPCFLNRQIITLLSTLGVEDQAFEKLQEEVVSRLDQVLNNKE 540
             K++S +  +DVL W+K++PC+LNRQ++TLLSTLGV+D  FE+ Q E V +LD +L++  
Sbjct: 583  LKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDTL 642

Query: 539  TALEVLQIMGGGEHHDVIVKMLQCGYSPEHEPYLSMILHAFRAAKLLELKVKTRIFVPEG 360
             A E L++M  GE+ +++ +ML CGY P+ EP+LSM+L  FRA+KLL+L+ ++RIF+P G
Sbjct: 643  KAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNG 702

Query: 359  RCLMGCLDESGTLEYGEVFVQVTEPQNSQF-DGGDPSQTILRSN-KKVITGRVIVAKNPC 186
            R +MGCLDES TLEYG+VFVQ T     QF +   P      +N   ++ G V+VAKNPC
Sbjct: 703  RTMMGCLDESRTLEYGQVFVQFTGTGRRQFYEESHPFNDSGSTNCDFILEGNVVVAKNPC 762

Query: 185  LHPGDVQILQTVDFPWLHHMVNCVVFPQKGERPHPNECSGSDLDGDLYFICWDESLIPPQ 6
            LHPGD+++L+ VD P LHHMV+CVVFPQKG+RPHPNECSGSDLDGD+YF+CWD  L+PP+
Sbjct: 763  LHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLVPPR 822


>gb|EXB32317.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
          Length = 862

 Score =  635 bits (1639), Expect = e-179
 Identities = 337/627 (53%), Positives = 435/627 (69%), Gaps = 6/627 (0%)
 Frame = -3

Query: 1868 WIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSLQMPFFPMPTSRL 1689
            W R  DFT +  IGQ S++C+E+PN  +  +++  F  YK  +G  SLQ       +S L
Sbjct: 188  WERDVDFTPSCCIGQSSALCLEIPNWRQLPNLRDVFVYYKEDEGQFSLQQGCPFSSSSDL 247

Query: 1688 VXXXXXXXXXXXPYQILYHVNLLVQEGVLNWPTLKRDFFSLLQPTREKPVHCILSALDEM 1509
            V           PY+IL+ VN LVQ G L    L  +FF L+ P+R  P+ CI SALD++
Sbjct: 248  VPMVVPPKGIILPYKILFKVNSLVQHGCLPAEVLDLNFFRLVDPSRI-PLECIESALDKL 306

Query: 1508 YYSSPC-FNPEKILKKSIHARNTRRYAD--PNSYLDGGLVRIHRAQVTPTKIYLCRPEVN 1338
            Y+   C ++P + LKK     NT       P   L+ GLV +HR QVTPTK+Y C PE+N
Sbjct: 307  YHLKDCCYDPLRWLKKQYIKYNTSGQIPKMPTIALEDGLVYVHRVQVTPTKVYFCGPEIN 366

Query: 1337 VSNRVIRQFSRYMDDFLRVSFVDEDGKQLHAYDLCRKMSNGD-KLYTRLYQRVVSVLKEG 1161
            +SNRV+R + + +D+FLRVSFVDE+  +L + DLC + S+ + K  TRLY R++  L+ G
Sbjct: 367  LSNRVLRNYPKDIDNFLRVSFVDENLDKLSSTDLCARGSSANGKRRTRLYDRILFTLRNG 426

Query: 1160 IVIGRKKFEFLAYSNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAARMGQS 981
            I+IG KKFEFLA+S+SQL+E SLWMFAS + +TA +IRNWMGDF  I+NVA+ AAR+GQS
Sbjct: 427  ILIGDKKFEFLAFSSSQLKEGSLWMFASRDGLTAADIRNWMGDFHDIKNVARYAARLGQS 486

Query: 980  FSSSRKTLRVLDTEVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASICGCT-YTPSA 804
            F SS +T RV   EVE + DI V    + Y FSDGIGKIS   A EVA  CG   YTPSA
Sbjct: 487  FGSSHETFRVGRDEVELIPDIEVKRDGKNYCFSDGIGKISEDFAKEVAKKCGLNRYTPSA 546

Query: 803  FQIRYGGYKGVVAVDPFSTYKLSLRP-SMKKFDSKDTFVDVLSWTKFRPCFLNRQIITLL 627
            FQIRYGGYKGVVAVDP S+ KLSLR  SM K+ SK+  +DVL+W+K++PCFLNR++ITLL
Sbjct: 547  FQIRYGGYKGVVAVDPTSSMKLSLRKKSMCKYKSKNNKLDVLAWSKYQPCFLNRELITLL 606

Query: 626  STLGVEDQAFEKLQEEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYSPEHE 447
            STLGV D  FEK Q+E ++RLD +L +   A + L++M   E  +++ +ML CGY P+ E
Sbjct: 607  STLGVRDCVFEKKQKETINRLDSILTDSLRAQDELKMMFPREISNILKEMLMCGYEPDEE 666

Query: 446  PYLSMILHAFRAAKLLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQNSQFD 267
            P+L+M+L    A+KLLEL+ KTRI VP GR +MGCLDE+GTLEYG+VFVQ + PQ     
Sbjct: 667  PFLAMMLQTLHASKLLELRTKTRIHVPNGRLMMGCLDETGTLEYGQVFVQCSRPQLFDDS 726

Query: 266  GGDPSQTILRSNKKVITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQKGERP 87
                +     S+K V+ G+V+VAKNPCLHPGDV++L+ VD P LHHMV+CVVFPQKG RP
Sbjct: 727  SLVFNNYSSSSDKFVVKGKVVVAKNPCLHPGDVRVLRAVDVPELHHMVDCVVFPQKGMRP 786

Query: 86   HPNECSGSDLDGDLYFICWDESLIPPQ 6
            H +ECSGSDLDGD YF+CWD  LIPPQ
Sbjct: 787  HTDECSGSDLDGDTYFVCWDRKLIPPQ 813