BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00001865
         (538 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group...    99   1e-27
gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subc...    99   1e-27
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...    98   2e-27
gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sa...    96   1e-26
gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-...    98   3e-26
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni...    96   6e-26
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...    96   1e-25
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc...    96   1e-25
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...    95   1e-25
emb|CAN76698.1| hypothetical protein VITISV_011792 [Vitis vinifera]    99   2e-25
gb|AAB82754.1| retrofit [Oryza longistaminata]                         95   3e-25
gb|ABF96081.1| retrotransposon protein, putative, Ty1-copia subc...    94   3e-25
gb|ABA94875.1| retrotransposon protein, putative, Ty1-copia subc...    94   3e-25
emb|CAN71427.1| hypothetical protein VITISV_027864 [Vitis vinifera]    97   5e-25
gb|AAW22873.1| putative polyprotein [Solanum lycopersicum]             94   6e-25
emb|CAN74984.1| hypothetical protein VITISV_035210 [Vitis vinifera]    88   6e-25
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                   93   8e-25
gb|AAX95666.1| Reverse transcriptase (RNA-dependent DNA polymera...    91   8e-25
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p...    95   1e-24
emb|CAE04319.3| OSJNBb0016D16.10 [Oryza sativa Japonica Group]         95   1e-24

>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1431

 Score = 99.0 bits (245), Expect(2) = 1e-27
 Identities = 46/108 (42%), Positives = 73/108 (67%)
 Frame = +3

Query: 108  KSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDEGRLIILAFHVDDIIITG 287
            K+LYGLKQA + WY RL++ L + GFK+SK D +L++ +KGD    +++  +VDDII+  
Sbjct: 1066 KALYGLKQAPRAWYSRLSTKLHELGFKSSKSDTSLFFYSKGDVAMFMLV--YVDDIIVAS 1123

Query: 288  EDSEAIKKFKENLEREFDIIDLGKAKYYLGFQIERINNTIILHQQCYA 431
               +A     +NL +EF + DLG+  Y+LG +++ +NN I+L Q+ YA
Sbjct: 1124 SSIDATNALLKNLNQEFALKDLGRLHYFLGIEVKEVNNGIVLTQEKYA 1171



 Score = 50.1 bits (118), Expect(2) = 1e-27
 Identities = 23/36 (63%), Positives = 28/36 (77%)
 Frame = +2

Query: 2    LDVKSAFLHGNLEEEVYMSQPP*YNKKSYLVCKLKK 109
            LDV++AFLHG LEE+V+M QPP Y +K   VCKL K
Sbjct: 1031 LDVQNAFLHGVLEEDVFMRQPPGYEQKDGYVCKLDK 1066


>gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1202

 Score = 98.6 bits (244), Expect(2) = 1e-27
 Identities = 47/108 (43%), Positives = 72/108 (66%)
 Frame = +3

Query: 108  KSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDEGRLIILAFHVDDIIITG 287
            K+LYGLKQA + WY RL++ L + GFK+SK D +L++ +KGD    I +  +VDDII+  
Sbjct: 928  KALYGLKQAPRAWYSRLSTKLHELGFKSSKSDTSLFFYSKGDV--TIFMLVYVDDIIVAS 985

Query: 288  EDSEAIKKFKENLEREFDIIDLGKAKYYLGFQIERINNTIILHQQCYA 431
               +A     +NL +EF + DLG+  Y+LG +++ +NN I+L Q+ YA
Sbjct: 986  SSIDATNALLKNLNQEFALKDLGRLHYFLGIEVKELNNGIVLTQEKYA 1033



 Score = 50.1 bits (118), Expect(2) = 1e-27
 Identities = 23/36 (63%), Positives = 28/36 (77%)
 Frame = +2

Query: 2    LDVKSAFLHGNLEEEVYMSQPP*YNKKSYLVCKLKK 109
            LDV++AFLHG LEE+V+M QPP Y +K   VCKL K
Sbjct: 893  LDVQNAFLHGVLEEDVFMRQPPGYEQKDGYVCKLDK 928


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
            gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1447

 Score = 98.2 bits (243), Expect(2) = 2e-27
 Identities = 48/108 (44%), Positives = 71/108 (65%)
 Frame = +3

Query: 108  KSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDEGRLIILAFHVDDIIITG 287
            K+LYGLKQA + WY RL+  L D GF+ SK D +L++ NKG  G +I +  +VDDII+T 
Sbjct: 1083 KALYGLKQAPRAWYSRLSKKLYDLGFQGSKGDTSLFFYNKG--GLIIFVLIYVDDIIVTS 1140

Query: 288  EDSEAIKKFKENLEREFDIIDLGKAKYYLGFQIERINNTIILHQQCYA 431
               EA+    ++L++EF + DLG   Y+LG ++ ++ + IIL Q  YA
Sbjct: 1141 SRQEAVSALLQDLKKEFALKDLGDLHYFLGIEVNKVTDEIILTQDKYA 1188



 Score = 49.7 bits (117), Expect(2) = 2e-27
 Identities = 25/38 (65%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
 Frame = +2

Query: 2    LDVKSAFLHGNLEEEVYMSQPP*YNKKSY--LVCKLKK 109
            LDV++AFLHG LEEEVYM QPP Y  +S+   VCKL K
Sbjct: 1046 LDVQNAFLHGFLEEEVYMKQPPGYEDESFPGYVCKLDK 1083


>gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sativa Japonica Group]
           gi|31433472|gb|AAP54977.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1031

 Score = 95.5 bits (236), Expect(2) = 1e-26
 Identities = 46/108 (42%), Positives = 71/108 (65%)
 Frame = +3

Query: 108 KSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDEGRLIILAFHVDDIIITG 287
           K+LYGLKQA + WY RL++ L + GFK+SK D +L++ +KGD    I +  +VDDII+  
Sbjct: 666 KALYGLKQAPRAWYSRLSTKLHELGFKSSKSDTSLFFYSKGDV--TIFMLVYVDDIIVAS 723

Query: 288 EDSEAIKKFKENLEREFDIIDLGKAKYYLGFQIERINNTIILHQQCYA 431
               A     +NL +EF + DLG+  Y+LG +++ +N+ I+L Q+ YA
Sbjct: 724 SSIVATNALLKNLNQEFALKDLGRLHYFLGIEVKEVNDGIVLTQEKYA 771



 Score = 50.1 bits (118), Expect(2) = 1e-26
 Identities = 23/36 (63%), Positives = 28/36 (77%)
 Frame = +2

Query: 2   LDVKSAFLHGNLEEEVYMSQPP*YNKKSYLVCKLKK 109
           LDV++AFLHG LEE+V+M QPP Y +K   VCKL K
Sbjct: 631 LDVQNAFLHGVLEEDVFMRQPPGYEQKDGYVCKLDK 666


>gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1621

 Score = 98.2 bits (243), Expect(2) = 3e-26
 Identities = 47/108 (43%), Positives = 71/108 (65%)
 Frame = +3

Query: 108  KSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDEGRLIILAFHVDDIIITG 287
            K+LYGLKQA + W+ RL+  L D GFK SK D +L++LNKGD    +++  +VDDII+  
Sbjct: 811  KALYGLKQAPRAWFSRLSKKLMDLGFKGSKADTSLFFLNKGDITMFVLV--YVDDIIVAS 868

Query: 288  EDSEAIKKFKENLEREFDIIDLGKAKYYLGFQIERINNTIILHQQCYA 431
               +A     +NL+ EF + DLG+  Y+LG ++ ++ N I+L+Q  YA
Sbjct: 869  SSEKATAALLQNLKGEFALKDLGELHYFLGIEVSKVQNGIVLNQDKYA 916



 Score = 46.2 bits (108), Expect(2) = 3e-26
 Identities = 24/38 (63%), Positives = 28/38 (73%), Gaps = 2/38 (5%)
 Frame = +2

Query: 2   LDVKSAFLHGNLEEEVYMSQPP*YN--KKSYLVCKLKK 109
           LDV++AFLHG LEEEVYM QPP +    K + VCKL K
Sbjct: 774 LDVQNAFLHGYLEEEVYMLQPPGFEDPTKPHHVCKLDK 811


>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|108706314|gb|ABF94109.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1247

 Score = 95.5 bits (236), Expect(2) = 6e-26
 Identities = 46/107 (42%), Positives = 69/107 (64%)
 Frame = +3

Query: 108  KSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDEGRLIILAFHVDDIIITG 287
            K+LYGLKQA + WY RL+  L D GF+ SK D +L++ NKGD   +I +  +VDDII+T 
Sbjct: 883  KALYGLKQAPRAWYSRLSKKLYDMGFQGSKADTSLFFYNKGD--LIIFVLIYVDDIIVTS 940

Query: 288  EDSEAIKKFKENLEREFDIIDLGKAKYYLGFQIERINNTIILHQQCY 428
               EA+     +L++EF + DLG   Y+LG ++ +++  I+L Q  Y
Sbjct: 941  SRQEAVPALLRDLQKEFALKDLGDLHYFLGIEVTKVSGGIVLTQDKY 987



 Score = 47.8 bits (112), Expect(2) = 6e-26
 Identities = 25/38 (65%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
 Frame = +2

Query: 2   LDVKSAFLHGNLEEEVYMSQPP*YNKKSY--LVCKLKK 109
           LDV++AFLHG LEEEVYM QPP Y   S    VCKL K
Sbjct: 846 LDVQNAFLHGVLEEEVYMKQPPGYEDSSLPGYVCKLDK 883


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1460

 Score = 96.3 bits (238), Expect(2) = 1e-25
 Identities = 46/108 (42%), Positives = 71/108 (65%)
 Frame = +3

Query: 108  KSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDEGRLIILAFHVDDIIITG 287
            K+LYGLKQA + W+ RL+  L D GFK SK D +L++LNKGD    +++  +VDDII+  
Sbjct: 1089 KALYGLKQAPRAWFSRLSKKLMDLGFKGSKPDTSLFFLNKGDITMFVLV--YVDDIIVAS 1146

Query: 288  EDSEAIKKFKENLEREFDIIDLGKAKYYLGFQIERINNTIILHQQCYA 431
               +A     ++L+ EF + DLG+  Y+LG ++ ++ N I+L+Q  YA
Sbjct: 1147 SSEKATAALLQDLKGEFALKDLGELHYFLGIEVSKVQNGIVLNQDKYA 1194



 Score = 46.2 bits (108), Expect(2) = 1e-25
 Identities = 24/38 (63%), Positives = 28/38 (73%), Gaps = 2/38 (5%)
 Frame = +2

Query: 2    LDVKSAFLHGNLEEEVYMSQPP*YN--KKSYLVCKLKK 109
            LDV++AFLHG LEEEVYM QPP +    K + VCKL K
Sbjct: 1052 LDVQNAFLHGYLEEEVYMLQPPGFEDPTKPHHVCKLDK 1089


>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1478

 Score = 95.9 bits (237), Expect(2) = 1e-25
 Identities = 46/108 (42%), Positives = 70/108 (64%)
 Frame = +3

Query: 108  KSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDEGRLIILAFHVDDIIITG 287
            K+LYGLKQA + W+ RL+  L D GFK SK D +L++LNKGD    +++  +VDDII+  
Sbjct: 1082 KALYGLKQAPRAWFSRLSKKLMDLGFKGSKADTSLFFLNKGDITMFVLV--YVDDIIVAS 1139

Query: 288  EDSEAIKKFKENLEREFDIIDLGKAKYYLGFQIERINNTIILHQQCYA 431
                A     ++L+ EF + DLG+  Y+LG ++ ++ N I+L+Q  YA
Sbjct: 1140 SSERATAALLQDLKGEFALKDLGELHYFLGIEVSKVQNGIVLNQDKYA 1187



 Score = 46.2 bits (108), Expect(2) = 1e-25
 Identities = 24/38 (63%), Positives = 28/38 (73%), Gaps = 2/38 (5%)
 Frame = +2

Query: 2    LDVKSAFLHGNLEEEVYMSQPP*YN--KKSYLVCKLKK 109
            LDV++AFLHG LEEEVYM QPP +    K + VCKL K
Sbjct: 1045 LDVQNAFLHGYLEEEVYMLQPPGFEDPTKPHHVCKLDK 1082


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108708884|gb|ABF96679.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1437

 Score = 94.7 bits (234), Expect(2) = 1e-25
 Identities = 47/108 (43%), Positives = 68/108 (62%)
 Frame = +3

Query: 108  KSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDEGRLIILAFHVDDIIITG 287
            K+LYGLKQA + WY RL+  L D GFK SK D +L++ NKG     I L  +VDDII+  
Sbjct: 1067 KALYGLKQAPRAWYSRLSGKLHDLGFKGSKADTSLFFYNKG--SLTIFLLIYVDDIIVVS 1124

Query: 288  EDSEAIKKFKENLEREFDIIDLGKAKYYLGFQIERINNTIILHQQCYA 431
               EA+    ++L++EF + DLG   Y+LG ++ +I   I++ Q+ YA
Sbjct: 1125 SRKEAVSALLQDLQKEFALKDLGDLHYFLGIEVTKIPGGILMSQEKYA 1172



 Score = 47.4 bits (111), Expect(2) = 1e-25
 Identities = 25/38 (65%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
 Frame = +2

Query: 2    LDVKSAFLHGNLEEEVYMSQPP*YNKKSY--LVCKLKK 109
            LDV++AFLHG LEEEVYM QPP Y   S    VCKL K
Sbjct: 1030 LDVQNAFLHGVLEEEVYMKQPPGYENPSTPDYVCKLDK 1067


>emb|CAN76698.1| hypothetical protein VITISV_011792 [Vitis vinifera]
          Length = 1084

 Score = 98.6 bits (244), Expect(2) = 2e-25
 Identities = 45/111 (40%), Positives = 74/111 (66%)
 Frame = +3

Query: 105  KKSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDEGRLIILAFHVDDIIIT 284
            KK+LYGLKQA + WY R+ ++   +GF+    D  L ++  GD G+++I++ +VDD+I T
Sbjct: 742  KKALYGLKQAPRAWYSRIEAYFIKEGFERCSCDHTL-FIKTGDGGKILIVSLYVDDLIFT 800

Query: 285  GEDSEAIKKFKENLEREFDIIDLGKAKYYLGFQIERINNTIILHQQCYAEK 437
            G D     KFK +++ EFD+ DLGK KY+LG ++ + +  I + Q+ YA++
Sbjct: 801  GNDESMFVKFKNSMKLEFDMTDLGKMKYFLGVEVLQNSEGIYISQRKYAKE 851



 Score = 42.7 bits (99), Expect(2) = 2e-25
 Identities = 23/38 (60%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
 Frame = +2

Query: 2   LDVKSAFLHGNLEEEVYMSQPP*YNKK--SYLVCKLKK 109
           LDVKSAFLHG L E V++ QP  Y KK   + V KLKK
Sbjct: 706 LDVKSAFLHGELNEAVFIEQPQGYEKKGEEHKVYKLKK 743


>gb|AAB82754.1| retrofit [Oryza longistaminata]
          Length = 1445

 Score = 94.7 bits (234), Expect(2) = 3e-25
 Identities = 46/108 (42%), Positives = 71/108 (65%)
 Frame = +3

Query: 108  KSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDEGRLIILAFHVDDIIITG 287
            K+LYGLKQA + WY RL+  L + GF+ SK D +L++LNKG  G L+ +  +VDDII+  
Sbjct: 1081 KALYGLKQAPRAWYSRLSKKLVELGFEASKADTSLFFLNKG--GILMFVLVYVDDIIVAS 1138

Query: 288  EDSEAIKKFKENLEREFDIIDLGKAKYYLGFQIERINNTIILHQQCYA 431
               +A     ++L +EF + DLG   Y+LG ++ +++N +IL Q+ YA
Sbjct: 1139 STEKATTALLKDLNKEFALKDLGDLHYFLGIEVTKVSNGVILTQEKYA 1186



 Score = 46.2 bits (108), Expect(2) = 3e-25
 Identities = 24/38 (63%), Positives = 28/38 (73%), Gaps = 2/38 (5%)
 Frame = +2

Query: 2    LDVKSAFLHGNLEEEVYMSQPP*Y--NKKSYLVCKLKK 109
            LDV++AFLHG LEEEVYM QPP +  + K   VCKL K
Sbjct: 1044 LDVQNAFLHGFLEEEVYMQQPPGFESSSKPDYVCKLDK 1081


>gb|ABF96081.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1180

 Score = 94.0 bits (232), Expect(2) = 3e-25
 Identities = 46/108 (42%), Positives = 71/108 (65%)
 Frame = +3

Query: 108  KSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDEGRLIILAFHVDDIIITG 287
            K+LYGLKQA + WY RL+  L+  GF+ SK D +L++ NK  +G  I +  +VDDII+  
Sbjct: 710  KALYGLKQAPRAWYARLSQKLQQLGFQGSKADTSLFFYNK--QGLTIFVLIYVDDIIVAS 767

Query: 288  EDSEAIKKFKENLEREFDIIDLGKAKYYLGFQIERINNTIILHQQCYA 431
               +A+    ++L++EF + DLG   Y+LG ++ +I+N IIL Q+ YA
Sbjct: 768  SRQDAVLTLLQDLQKEFALKDLGDLHYFLGIEVNKISNGIILTQEKYA 815



 Score = 47.0 bits (110), Expect(2) = 3e-25
 Identities = 24/38 (63%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
 Frame = +2

Query: 2   LDVKSAFLHGNLEEEVYMSQPP*YNKKSY--LVCKLKK 109
           LDV +AFLHG LEEEVYM QPP Y  K+    +CKL K
Sbjct: 673 LDVHNAFLHGILEEEVYMKQPPGYEDKANPGCICKLDK 710


>gb|ABA94875.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 626

 Score = 93.6 bits (231), Expect(2) = 3e-25
 Identities = 44/104 (42%), Positives = 68/104 (65%)
 Frame = +3

Query: 108 KSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDEGRLIILAFHVDDIIITG 287
           K+LYGLKQA + WY RL+  L+  GFK SK D +L+Y NKG+    I++  +VDDII+  
Sbjct: 444 KALYGLKQAPRAWYARLSGKLQQLGFKPSKADTSLFYFNKGNVTMFILI--YVDDIIVAS 501

Query: 288 EDSEAIKKFKENLEREFDIIDLGKAKYYLGFQIERINNTIILHQ 419
              +A+     +L+ +F + DLG+  Y+LG ++ ++NN +IL Q
Sbjct: 502 STKDAVPALLHDLKEDFALKDLGELHYFLGIEVNKVNNGLILTQ 545



 Score = 47.4 bits (111), Expect(2) = 3e-25
 Identities = 24/38 (63%), Positives = 28/38 (73%), Gaps = 2/38 (5%)
 Frame = +2

Query: 2   LDVKSAFLHGNLEEEVYMSQPP*Y--NKKSYLVCKLKK 109
           LDV++AFLHG LEEEVYM QPP Y  + K   +CKL K
Sbjct: 407 LDVQNAFLHGVLEEEVYMRQPPGYENSSKPDFICKLDK 444


>emb|CAN71427.1| hypothetical protein VITISV_027864 [Vitis vinifera]
          Length = 1300

 Score = 97.1 bits (240), Expect(2) = 5e-25
 Identities = 47/110 (42%), Positives = 73/110 (66%)
 Frame = +3

Query: 105  KKSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDEGRLIILAFHVDDIIIT 284
            +K+LYGLKQA + WY ++  FL   G+  +  D +L+   K + G+L I+  +VDD+IIT
Sbjct: 928  RKALYGLKQAPRAWYGKIAEFLTQSGYSVTPADSSLFV--KANGGKLAIVLVYVDDLIIT 985

Query: 285  GEDSEAIKKFKENLEREFDIIDLGKAKYYLGFQIERINNTIILHQQCYAE 434
            G+D E I + KENL   F++ +LG+ K++LG +++R N  I L QQ YA+
Sbjct: 986  GDDVEEIFRTKENLSVRFEMKELGQLKHFLGLEVDRTNEGIFLCQQKYAK 1035



 Score = 43.1 bits (100), Expect(2) = 5e-25
 Identities = 19/38 (50%), Positives = 28/38 (73%), Gaps = 2/38 (5%)
 Frame = +2

Query: 2    LDVKSAFLHGNLEEEVYMSQPP*YNKKSY--LVCKLKK 109
            +DVK+AFLHG L+ E+YM+QP  +  + +   VCKL+K
Sbjct: 892  MDVKNAFLHGELDREIYMNQPMGFQSQGHPEYVCKLRK 929


>gb|AAW22873.1| putative polyprotein [Solanum lycopersicum]
          Length = 687

 Score = 93.6 bits (231), Expect(2) = 6e-25
 Identities = 50/113 (44%), Positives = 70/113 (61%), Gaps = 2/113 (1%)
 Frame = +3

Query: 105 KKSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDEGRLIILAFHVDDIIIT 284
           KKSLYGLKQA + WY +  SF+ +  +K +  DP + Y  K  EG  IIL  +VDD++I 
Sbjct: 317 KKSLYGLKQAPRQWYHKFDSFMSNNEYKRTTADPCV-YFRKFSEGNFIILCLYVDDMLIV 375

Query: 285 GEDSEAIKKFKENLEREFDIIDLGKAKYYLGFQI--ERINNTIILHQQCYAEK 437
           G+D E I + KE+L + FD+ DLG AK  LG +I  +R    + L Q+ Y E+
Sbjct: 376 GQDVEMICRLKEDLSKSFDMKDLGPAKQILGMEIARDRKAGKLWLSQENYIER 428



 Score = 46.2 bits (108), Expect(2) = 6e-25
 Identities = 23/38 (60%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
 Frame = +2

Query: 2   LDVKSAFLHGNLEEEVYMSQPP*Y--NKKSYLVCKLKK 109
           LDVK+AFLHG+L EE+YM QP  +    K   VCKLKK
Sbjct: 281 LDVKTAFLHGDLHEEIYMEQPEGFEVKGKENFVCKLKK 318


>emb|CAN74984.1| hypothetical protein VITISV_035210 [Vitis vinifera]
          Length = 2408

 Score = 88.2 bits (217), Expect(3) = 6e-25
 Identities = 41/110 (37%), Positives = 70/110 (63%)
 Frame = +3

Query: 105 KKSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDEGRLIILAFHVDDIIIT 284
           KK+LYGLKQA + WY  + ++   +GF+    +  L ++  GD G+++I++ +VDD+I T
Sbjct: 672 KKALYGLKQAPRAWYSWIEAYFVKEGFERCNCEHTL-FIKMGDGGKILIVSLYVDDLIFT 730

Query: 285 GEDSEAIKKFKENLEREFDIIDLGKAKYYLGFQIERINNTIILHQQCYAE 434
           G +     KFK +++ EFD+ DLGK KY+L  ++ +    I + Q+ YA+
Sbjct: 731 GNNESMFVKFKNSMKLEFDMTDLGKMKYFLNVEVLQNLEGIYISQRKYAK 780



 Score = 44.7 bits (104), Expect(3) = 6e-25
 Identities = 24/38 (63%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
 Frame = +2

Query: 2   LDVKSAFLHGNLEEEVYMSQPP*YNKK--SYLVCKLKK 109
           LDVKSAFLHG L E V++ QP  Y KK   Y V KLKK
Sbjct: 636 LDVKSAFLHGELNEAVFVEQPQGYEKKGEEYKVYKLKK 673



 Score = 26.9 bits (58), Expect(3) = 6e-25
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 409 YFINNAMLKKILEYMKLQNSQSR*VPIEPGFDFNKDEK 522
           Y       K +LE+ +++ S S   PI PG    KDE+
Sbjct: 772 YISQRKYAKDVLEWFRMEKSNSVKNPIVPGVRLMKDEE 809



 Score = 77.0 bits (188), Expect(2) = 3e-18
 Identities = 39/109 (35%), Positives = 67/109 (61%)
 Frame = +3

Query: 105  KKSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDEGRLIILAFHVDDIIIT 284
            +++LYGLKQA + W+ +  S +   G+  S  D  L +L + D+G +++L + VDD+IIT
Sbjct: 2093 RRALYGLKQAPRAWFAKFXSTIFRLGYTASPYDSAL-FLRRTDKGTILLLLY-VDDMIIT 2150

Query: 285  GEDSEAIKKFKENLEREFDIIDLGKAKYYLGFQIERINNTIILHQQCYA 431
            G D   I++ K+ L ++F++ DLG   Y+LG +I    + + + Q  YA
Sbjct: 2151 GNDLSGIQELKDFLSQQFEMKDLGHLSYFLGLEITHSTDGLYITQAKYA 2199



 Score = 40.0 bits (92), Expect(2) = 3e-18
 Identities = 18/36 (50%), Positives = 26/36 (72%)
 Frame = +2

Query: 2    LDVKSAFLHGNLEEEVYMSQPP*YNKKSYLVCKLKK 109
            +DVK+AFL+G+L E VYM  PP  + +S  VC L++
Sbjct: 2059 MDVKNAFLNGDLSEAVYMQPPPGLSVESNKVCHLRR 2094


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score = 93.2 bits (230), Expect(2) = 8e-25
 Identities = 46/108 (42%), Positives = 70/108 (64%)
 Frame = +3

Query: 108  KSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDEGRLIILAFHVDDIIITG 287
            K+LYGLKQA + WY RL+  L + GF+ SK D +L++LNKG  G ++ +  +VDDIII  
Sbjct: 1072 KALYGLKQAPRAWYSRLSKKLVELGFEASKADTSLFFLNKG--GIIMFVLVYVDDIIIAS 1129

Query: 288  EDSEAIKKFKENLEREFDIIDLGKAKYYLGFQIERINNTIILHQQCYA 431
               +A     ++L +EF + DLG   Y+LG ++ ++ N I+L Q+ YA
Sbjct: 1130 STEKATTALLKDLNKEFALKDLGDLHYFLGIEVTKVPNGIVLTQEKYA 1177



 Score = 46.2 bits (108), Expect(2) = 8e-25
 Identities = 24/38 (63%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
 Frame = +2

Query: 2    LDVKSAFLHGNLEEEVYMSQPP*YN--KKSYLVCKLKK 109
            LDV++AFLHG LEEEVYM QPP +    K   VCKL K
Sbjct: 1035 LDVQNAFLHGFLEEEVYMQQPPGFESFSKPNYVCKLDK 1072


>gb|AAX95666.1| Reverse transcriptase (RNA-dependent DNA polymerase), putative
           [Oryza sativa Japonica Group]
           gi|108710700|gb|ABF98495.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 757

 Score = 90.9 bits (224), Expect(2) = 8e-25
 Identities = 46/108 (42%), Positives = 68/108 (62%)
 Frame = +3

Query: 108 KSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDEGRLIILAFHVDDIIITG 287
           KSLYGLKQA + W+ RL++ L D GF  SK D +L++L+KGD    I +  +VDDII+  
Sbjct: 481 KSLYGLKQAPRAWFARLSNKLIDLGFSASKADTSLFFLHKGDIA--IFILVYVDDIIVVS 538

Query: 288 EDSEAIKKFKENLEREFDIIDLGKAKYYLGFQIERINNTIILHQQCYA 431
               A     ++L+ EF + DLG+  Y+LG ++ + +N I+L Q  YA
Sbjct: 539 SSERATTALLQDLKVEFALKDLGELHYFLGIEVNKTHNGIVLTQDKYA 586



 Score = 48.5 bits (114), Expect(2) = 8e-25
 Identities = 23/38 (60%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
 Frame = +2

Query: 2   LDVKSAFLHGNLEEEVYMSQPP*YN--KKSYLVCKLKK 109
           LDV++AFLHG+LEEEVYM QPP +    K + +CKL K
Sbjct: 444 LDVQNAFLHGHLEEEVYMDQPPGFEDVTKPHYICKLDK 481


>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
            sativa Japonica Group]
          Length = 1448

 Score = 94.7 bits (234), Expect(2) = 1e-24
 Identities = 45/108 (41%), Positives = 71/108 (65%)
 Frame = +3

Query: 108  KSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDEGRLIILAFHVDDIIITG 287
            K+LYGLKQA + WY RL+  L + GF+ SK D +L++LNKG  G ++ +  +VDDII+  
Sbjct: 1084 KALYGLKQAPRAWYSRLSKKLTELGFEASKADTSLFFLNKG--GIIMFVLVYVDDIIVAS 1141

Query: 288  EDSEAIKKFKENLEREFDIIDLGKAKYYLGFQIERINNTIILHQQCYA 431
               +A     ++L +EF + DLG   Y+LG ++ +++N +IL Q+ YA
Sbjct: 1142 STEKATTALLKDLNKEFTLKDLGDLHYFLGIEVTKVSNGVILTQEKYA 1189



 Score = 44.3 bits (103), Expect(2) = 1e-24
 Identities = 23/38 (60%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
 Frame = +2

Query: 2    LDVKSAFLHGNLEEEVYMSQPP*Y--NKKSYLVCKLKK 109
            LDV++ FLHG LEEEVYM QPP +  + K   VCKL K
Sbjct: 1047 LDVQNDFLHGFLEEEVYMQQPPGFESSSKPDYVCKLNK 1084


>emb|CAE04319.3| OSJNBb0016D16.10 [Oryza sativa Japonica Group]
          Length = 950

 Score = 95.1 bits (235), Expect(2) = 1e-24
 Identities = 46/108 (42%), Positives = 72/108 (66%)
 Frame = +3

Query: 108 KSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDEGRLIILAFHVDDIIITG 287
           K+LYGLKQA++ WY RL+  L + GF+ SK D +L++LNKG  G ++ +  +VDDII+  
Sbjct: 149 KALYGLKQATRAWYSRLSKKLVELGFEASKADTSLFFLNKG--GIIMFVLVYVDDIIVAS 206

Query: 288 EDSEAIKKFKENLEREFDIIDLGKAKYYLGFQIERINNTIILHQQCYA 431
              +A     ++L +EF + DLG   Y+LG ++ +++N IIL Q+ YA
Sbjct: 207 STEKATTALLKDLNKEFALKDLGDLHYFLGIEVTKVSNGIILTQEKYA 254



 Score = 43.9 bits (102), Expect(2) = 1e-24
 Identities = 22/38 (57%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
 Frame = +2

Query: 2   LDVKSAFLHGNLEEEVYMSQPP*Y--NKKSYLVCKLKK 109
           LDV++ FLHG L+EEVYM QPP +  + K   VCKL K
Sbjct: 112 LDVQNVFLHGFLQEEVYMQQPPGFESSSKPNYVCKLDK 149