BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00001118
         (4075 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX19931.1| viral replicase [Nandina mosaic virus]                1629   0.0  
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...  1626   0.0  
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1618   0.0  
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1618   0.0  
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1614   0.0  
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1614   0.0  
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1613   0.0  
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1612   0.0  
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1608   0.0  
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...  1360   0.0  
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a...  1326   0.0  
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...  1095   0.0  
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]            1078   0.0  
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5...  1074   0.0  
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A...   952   0.0  
gb|AFM77886.1| replicase [Hosta virus X]                              946   0.0  
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2...   939   0.0  
ref|NP_077079.1| replicase [Clover yellow mosaic virus]               937   0.0  
gb|ACS28233.1| replicase [Alternanthera mosaic virus]                 934   0.0  
ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082...   932   0.0  

>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score = 1629 bits (4219), Expect = 0.0
 Identities = 810/975 (83%), Positives = 857/975 (87%)
 Frame = +1

Query: 1    TRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHT 180
            TRLRGPPGF +PFT+P PVNPDDA+T  +FREF      S   T+ + LE S E+  +HT
Sbjct: 410  TRLRGPPGFLSPFTRPQPVNPDDAETTESFREFIQPLNPSPTATVTEMLENSTESDVTHT 469

Query: 181  SLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALN 360
            SLKV    LS EQL ALHELGN+R GGP+LPK +                  T  S+ L 
Sbjct: 470  SLKVVPQSLSPEQLSALHELGNSRCGGPMLPKRSSNH---------------THTSSDLL 514

Query: 361  QGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATL 540
            +  H    P        P  +   K   +GFEALEIQTDPSTG+ IMPITD R+LP+A +
Sbjct: 515  RRRH----PRQQRSTNPPMGSLAAKAKRIGFEALEIQTDPSTGQPIMPITDTRELPRAIM 570

Query: 541  PEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQ 720
            P HW+ P   K++ TLR+LNRFPT W PDRARARAFTSDVKNSRTGKALHRE+QTWKETQ
Sbjct: 571  PAHWDSPQFEKIIATLRNLNRFPTPWSPDRARARAFTSDVKNSRTGKALHRESQTWKETQ 630

Query: 721  TMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHN 900
            TMLTDN   + AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHN
Sbjct: 631  TMLTDNAEIHTAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHN 690

Query: 901  PPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEA 1080
            PPEQFRTFERAFV S+ P+VIFDDYGKLPQGYIEAFAMTHA+LEL+ILTGDPRQSTHHEA
Sbjct: 691  PPEQFRTFERAFVSSRGPVVIFDDYGKLPQGYIEAFAMTHANLELIILTGDPRQSTHHEA 750

Query: 1081 NEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGL 1260
            NEEALISKL+PATT FSELSRYYINATHRNSKFLANKLG+YSSN CPLKVTYGFQPQPGL
Sbjct: 751  NEEALISKLSPATTTFSELSRYYINATHRNSKFLANKLGIYSSNHCPLKVTYGFQPQPGL 810

Query: 1261 HLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDS 1440
            HLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDS
Sbjct: 811  HLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDS 870

Query: 1441 IHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDK 1620
             HFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EFS                 VE+ 
Sbjct: 871  NHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAPPDPPKSVMPPVTHFPVEEC 930

Query: 1621 TTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLT 1800
            TT LDDF+E L DKF+REIFTEAHGHTNCVQ DDPTTQLFSHQQAKDEALLWETIKARLT
Sbjct: 931  TTALDDFREELHDKFDREIFTEAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETIKARLT 990

Query: 1801 ISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSIS 1980
            ISTPEAN+EEFRAKKDLGDILW NYHKAM LPKEQP+FSE+LWTRCAEEVQNTYLKKS++
Sbjct: 991  ISTPEANIEEFRAKKDLGDILWTNYHKAMNLPKEQPDFSEELWTRCAEEVQNTYLKKSLN 1050

Query: 1981 QIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMAR 2160
            Q+KGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMAR
Sbjct: 1051 QLKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMAR 1110

Query: 2161 YMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEI 2340
            YMRRFRDALSPNNIMINCEKTPQDLSRWVL+YWDFSKP+YANDFTAFDQSQDGAMLQFEI
Sbjct: 1111 YMRRFRDALSPNNIMINCEKTPQDLSRWVLSYWDFSKPAYANDFTAFDQSQDGAMLQFEI 1170

Query: 2341 LKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIP 2520
            LKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF IP
Sbjct: 1171 LKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFNIP 1230

Query: 2521 EGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGL 2700
            EGTAQIYAGDDCAIAQVCPEKPSFALLK+RIALQAKPAYTPQERGQWAEFCGYLITPKGL
Sbjct: 1231 EGTAQIYAGDDCAIAQVCPEKPSFALLKDRIALQAKPAYTPQERGQWAEFCGYLITPKGL 1290

Query: 2701 IKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQ 2880
            IKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGD+L DLLSPRQAHLHQ
Sbjct: 1291 IKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDELHDLLSPRQAHLHQ 1350

Query: 2881 VTVRDLVKFGGSPFL 2925
            VTVRDLVKFGGSPFL
Sbjct: 1351 VTVRDLVKFGGSPFL 1365


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
            gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
            replication protein; AltName: Full=156 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
            [Plantago asiatica mosaic virus]
          Length = 1385

 Score = 1626 bits (4211), Expect = 0.0
 Identities = 802/975 (82%), Positives = 859/975 (88%)
 Frame = +1

Query: 1    TRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHT 180
            T +RGPPGF NPFT+P PVNP+DAD    F++FS  + ++   T+   LE SAE+   HT
Sbjct: 408  TTVRGPPGFKNPFTQPQPVNPEDADISSRFQDFSRATNSTPKPTVEAVLEASAESPDHHT 467

Query: 181  SLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALN 360
             LKV  + LS  QL A+H LG++R GGPLLP++T +    E           ++AS A +
Sbjct: 468  QLKVLCSALSEGQLEAIHALGHSRCGGPLLPELTAKSTPVEQCPDLPPCPTKSQASPASS 527

Query: 361  QGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATL 540
                 D  P   +P TLPWVAWLPKLNALGFEALE+Q DPSTGE+IMPITD ++LP+ATL
Sbjct: 528  NPSGPDAQPTAQNPETLPWVAWLPKLNALGFEALEVQHDPSTGEMIMPITDTQELPRATL 587

Query: 541  PEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQ 720
            P HW    L ++L+TLRSLNRFPT W PDR RARAFTSDVKNSRTGKALHRE+QTWKETQ
Sbjct: 588  PAHWQGHNLERILSTLRSLNRFPTPWSPDRTRARAFTSDVKNSRTGKALHRESQTWKETQ 647

Query: 721  TMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHN 900
            TMLT+N    LAISVIHGAGGSGKSQALQTLLRQ+  LPIEVVLPTNELRLDWLKKLPHN
Sbjct: 648  TMLTENTQTELAISVIHGAGGSGKSQALQTLLRQDHSLPIEVVLPTNELRLDWLKKLPHN 707

Query: 901  PPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEA 1080
            PPEQFRTFERAFV S SP+VIFDDYGKLPQGY+EAFA+THA+LELVILTGDPRQSTHHE+
Sbjct: 708  PPEQFRTFERAFVSSHSPVVIFDDYGKLPQGYLEAFALTHANLELVILTGDPRQSTHHES 767

Query: 1081 NEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGL 1260
            NEEALISKL PATTI+S  SRYYINAT RNSKFLANKLGVYS+NSCPL VTYGFQP PGL
Sbjct: 768  NEEALISKLPPATTIYSAFSRYYINATLRNSKFLANKLGVYSANSCPLNVTYGFQPLPGL 827

Query: 1261 HLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDS 1440
            HLLVPSL+KKAAFTDAGHKVS+YAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDS
Sbjct: 828  HLLVPSLMKKAAFTDAGHKVSSYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDS 887

Query: 1441 IHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDK 1620
            IHFVN+NAQSSAFWEKLEATPYLKTFLSLVREDKI EF                  VE+ 
Sbjct: 888  IHFVNTNAQSSAFWEKLEATPYLKTFLSLVREDKITEFQAPADAPKPVTPPVTHFPVEEP 947

Query: 1621 TTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLT 1800
             TTLDDFKE L DKF+REIFT   GHTNCVQ DDPTTQLFSHQQAKDEALLWE I+ARL 
Sbjct: 948  ATTLDDFKEELRDKFDREIFTSDRGHTNCVQTDDPTTQLFSHQQAKDEALLWEMIRARLK 1007

Query: 1801 ISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSIS 1980
            ISTPEAN+EEFRAKKDLGDILW NYH+AM LPKEQP+FSEDLW RCAEEVQNTYLKK+++
Sbjct: 1008 ISTPEANIEEFRAKKDLGDILWVNYHRAMGLPKEQPDFSEDLWNRCAEEVQNTYLKKTMA 1067

Query: 1981 QIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMAR 2160
            Q+KGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAK+IKPGQTIASFQQHAVMLYGTMAR
Sbjct: 1068 QLKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKEIKPGQTIASFQQHAVMLYGTMAR 1127

Query: 2161 YMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEI 2340
            YMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEI
Sbjct: 1128 YMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEI 1187

Query: 2341 LKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIP 2520
            LKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF+IP
Sbjct: 1188 LKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFDIP 1247

Query: 2521 EGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGL 2700
            EGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGL
Sbjct: 1248 EGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGL 1307

Query: 2701 IKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQ 2880
            IKDPLKLHASLELAKAQKKAGV+DAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QAHLHQ
Sbjct: 1308 IKDPLKLHASLELAKAQKKAGVRDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAHLHQ 1367

Query: 2881 VTVRDLVKFGGSPFL 2925
            VTVRDLVKFGGSPFL
Sbjct: 1368 VTVRDLVKFGGSPFL 1382


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1618 bits (4190), Expect = 0.0
 Identities = 808/975 (82%), Positives = 851/975 (87%)
 Frame = +1

Query: 1    TRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHT 180
            T LRG PGF +PF +P PVNPDDA+T ++F+ F   +      T+  +L   +E    H 
Sbjct: 410  THLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQAT-----ATVEATLAQQSETPDEHQ 464

Query: 181  SLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALN 360
            SL +    L   QL ALHELGN R GGPLLPK  P +  R                    
Sbjct: 465  SLSLKCPTLPEHQLWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHK 523

Query: 361  QGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATL 540
                +D +P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A  
Sbjct: 524  TTQSSD-LPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADG 582

Query: 541  PEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQ 720
              HW  P + ++L+TLRSLNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQ
Sbjct: 583  HAHWQGPDMERILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQ 642

Query: 721  TMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHN 900
            TMLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHN
Sbjct: 643  TMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHN 702

Query: 901  PPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEA 1080
            PPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+
Sbjct: 703  PPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHES 762

Query: 1081 NEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGL 1260
            NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGL
Sbjct: 763  NEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGL 822

Query: 1261 HLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDS 1440
            HLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDS
Sbjct: 823  HLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDS 882

Query: 1441 IHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDK 1620
            IHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+                 VED 
Sbjct: 883  IHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPVEDG 942

Query: 1621 TTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLT 1800
            TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT
Sbjct: 943  TTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLT 1002

Query: 1801 ISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSIS 1980
            +S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+S
Sbjct: 1003 LSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVS 1062

Query: 1981 QIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMAR 2160
            QIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMAR
Sbjct: 1063 QIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMAR 1122

Query: 2161 YMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEI 2340
            YMRRFRDAL PNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEI
Sbjct: 1123 YMRRFRDALRPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEI 1182

Query: 2341 LKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIP 2520
            LKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IP
Sbjct: 1183 LKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIP 1242

Query: 2521 EGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGL 2700
            EGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGL
Sbjct: 1243 EGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGL 1302

Query: 2701 IKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQ 2880
            IKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA LHQ
Sbjct: 1303 IKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQARLHQ 1362

Query: 2881 VTVRDLVKFGGSPFL 2925
            VTVRDLVKFGGS FL
Sbjct: 1363 VTVRDLVKFGGSSFL 1377


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1618 bits (4189), Expect = 0.0
 Identities = 807/979 (82%), Positives = 853/979 (87%), Gaps = 4/979 (0%)
 Frame = +1

Query: 1    TRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHT 180
            T LRG PGF +PF +P PVNPDDA+T ++F+ F   + T+       +LE  AE    H 
Sbjct: 410  THLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATITAEA-----ALEQQAETPDEHQ 464

Query: 181  SLKVGHADLSTEQLRALHELGNTRLGGPLLPK----ITPEEQDREXXXXXXXXXXXTKAS 348
            SL +    L   QL ALHELGNTR GGPLLPK    +T  E   +            + +
Sbjct: 465  SLSLKCPTLPEHQLWALHELGNTRCGGPLLPKGPAKLTTVEPCPDLPAENSANPEPPRKT 524

Query: 349  AALNQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLP 528
                    T  +P   DP TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP
Sbjct: 525  T------QTLDLPHPEDPTTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELP 578

Query: 529  KATLPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTW 708
            +A    HW  P + ++++TLRS NR+PT W PDR+RA+AFTSDVKNSRTGKALHRE+Q W
Sbjct: 579  RAEGHAHWQGPDMERIISTLRSFNRYPTPWNPDRSRAKAFTSDVKNSRTGKALHRESQVW 638

Query: 709  KETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKK 888
            KETQTML +N   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKK
Sbjct: 639  KETQTMLAENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKK 698

Query: 889  LPHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQST 1068
            LPHNPPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFA+THASLELVILTGDPRQST
Sbjct: 699  LPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFALTHASLELVILTGDPRQST 758

Query: 1069 HHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQP 1248
            HHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSN CPLKVTYGFQP
Sbjct: 759  HHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNPCPLKVTYGFQP 818

Query: 1249 QPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSR 1428
            QPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSR
Sbjct: 819  QPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSR 878

Query: 1429 AVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXX 1608
            AVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+                 
Sbjct: 879  AVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTATTAEAKPVAPPCTHFP 938

Query: 1609 VEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIK 1788
            VED TTTLDDFKE L DKF+REIF   HGHTNCVQ DDPTTQLFSHQQAKDEALLWETI 
Sbjct: 939  VEDGTTTLDDFKEELHDKFDREIFNPTHGHTNCVQTDDPTTQLFSHQQAKDEALLWETIN 998

Query: 1789 ARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLK 1968
            ARLTIS PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLK
Sbjct: 999  ARLTISNPEANLAEFRAKKDLGDILWENYRKAMKLPNEQPDFSEDLWIRCAEEVQNTYLK 1058

Query: 1969 KSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYG 2148
            KS++QIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYG
Sbjct: 1059 KSVAQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYG 1118

Query: 2149 TMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAML 2328
            TMARYMRRFR+ALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAML
Sbjct: 1119 TMARYMRRFREALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAML 1178

Query: 2329 QFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTR 2508
            QFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTL+IMRLTGEGPTFDANTECNIAYTHTR
Sbjct: 1179 QFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLTIMRLTGEGPTFDANTECNIAYTHTR 1238

Query: 2509 FEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLIT 2688
            F+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLIT
Sbjct: 1239 FDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLIT 1298

Query: 2689 PKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQA 2868
            PKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA
Sbjct: 1299 PKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQA 1358

Query: 2869 HLHQVTVRDLVKFGGSPFL 2925
            HLHQVTVRDLVKFGGSPFL
Sbjct: 1359 HLHQVTVRDLVKFGGSPFL 1377


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1614 bits (4180), Expect = 0.0
 Identities = 806/975 (82%), Positives = 850/975 (87%)
 Frame = +1

Query: 1    TRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHT 180
            T LRG PGF +PF +P PVNPDDA+T ++F+ F   +      T+  +L   +E    H 
Sbjct: 410  THLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQAT-----ATVEXTLAQQSETPDEHQ 464

Query: 181  SLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALN 360
            SL +  + L   QL ALHELGN R GGPLLPK  P +  R                    
Sbjct: 465  SLSLKCSTLPEHQLWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHK 523

Query: 361  QGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATL 540
                +D +P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A  
Sbjct: 524  TTQSSD-LPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADG 582

Query: 541  PEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQ 720
              HW  P + ++L+TLR LNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQ
Sbjct: 583  HAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQ 642

Query: 721  TMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHN 900
            TMLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHN
Sbjct: 643  TMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHN 702

Query: 901  PPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEA 1080
            PPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+
Sbjct: 703  PPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHES 762

Query: 1081 NEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGL 1260
            NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGL
Sbjct: 763  NEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGL 822

Query: 1261 HLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDS 1440
            HLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDS
Sbjct: 823  HLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDS 882

Query: 1441 IHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDK 1620
            IHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+                 VED 
Sbjct: 883  IHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPVEDG 942

Query: 1621 TTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLT 1800
            TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT
Sbjct: 943  TTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLT 1002

Query: 1801 ISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSIS 1980
            +S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+S
Sbjct: 1003 LSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVS 1062

Query: 1981 QIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMAR 2160
            QIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMAR
Sbjct: 1063 QIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMAR 1122

Query: 2161 YMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEI 2340
            YMRRFRDAL PNNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGAMLQFEI
Sbjct: 1123 YMRRFRDALRPNNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGAMLQFEI 1182

Query: 2341 LKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIP 2520
            LKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IP
Sbjct: 1183 LKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIP 1242

Query: 2521 EGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGL 2700
            EGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGL
Sbjct: 1243 EGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGL 1302

Query: 2701 IKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQ 2880
            IKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA LHQ
Sbjct: 1303 IKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQARLHQ 1362

Query: 2881 VTVRDLVKFGGSPFL 2925
            VTVRDLVKFGGS FL
Sbjct: 1363 VTVRDLVKFGGSSFL 1377


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1614 bits (4179), Expect = 0.0
 Identities = 806/975 (82%), Positives = 850/975 (87%)
 Frame = +1

Query: 1    TRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHT 180
            T LRG PGF +PF +P PVNPDDA+T ++F+ F   +      T+  +L   +E    H 
Sbjct: 410  THLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQAT-----ATVEATLAQQSETPDEHQ 464

Query: 181  SLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALN 360
            SL +  + L   QL ALHELGN R GGPLLPK  P +  R                    
Sbjct: 465  SLSLKCSTLPEHQLWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHK 523

Query: 361  QGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATL 540
                +D +P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A  
Sbjct: 524  TTQSSD-LPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADG 582

Query: 541  PEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQ 720
              HW  P + ++L+TLR LNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQ
Sbjct: 583  HAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQ 642

Query: 721  TMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHN 900
            TMLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHN
Sbjct: 643  TMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHN 702

Query: 901  PPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEA 1080
            PPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+
Sbjct: 703  PPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHES 762

Query: 1081 NEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGL 1260
            NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGL
Sbjct: 763  NEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGL 822

Query: 1261 HLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDS 1440
            HLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDS
Sbjct: 823  HLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDS 882

Query: 1441 IHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDK 1620
            IHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+                 VED 
Sbjct: 883  IHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPVEDG 942

Query: 1621 TTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLT 1800
            TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT
Sbjct: 943  TTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLT 1002

Query: 1801 ISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSIS 1980
            +S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+S
Sbjct: 1003 LSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVS 1062

Query: 1981 QIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMAR 2160
            QIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMAR
Sbjct: 1063 QIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMAR 1122

Query: 2161 YMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEI 2340
            YMRRFRDAL PNNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGAMLQFEI
Sbjct: 1123 YMRRFRDALRPNNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGAMLQFEI 1182

Query: 2341 LKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIP 2520
            LKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IP
Sbjct: 1183 LKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIP 1242

Query: 2521 EGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGL 2700
            EGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGL
Sbjct: 1243 EGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGL 1302

Query: 2701 IKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQ 2880
            IKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA LHQ
Sbjct: 1303 IKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQARLHQ 1362

Query: 2881 VTVRDLVKFGGSPFL 2925
            VTVRDLVKFGGS FL
Sbjct: 1363 VTVRDLVKFGGSSFL 1377


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1613 bits (4176), Expect = 0.0
 Identities = 805/975 (82%), Positives = 849/975 (87%)
 Frame = +1

Query: 1    TRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHT 180
            T LRG PGF +PF +P PVNPDDA+T ++F+ F   +      T+  +L   +E    H 
Sbjct: 410  THLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQAT-----ATVEATLAQQSETPDEHQ 464

Query: 181  SLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALN 360
            SL +    L   QL ALHELGN R GGPLLPK  P +  R                    
Sbjct: 465  SLSLKCPTLPEHQLWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHK 523

Query: 361  QGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATL 540
                +D +P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A  
Sbjct: 524  TTQSSD-LPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADG 582

Query: 541  PEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQ 720
              HW  P + ++L+TLRSLNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQ
Sbjct: 583  HAHWQGPDMERILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQ 642

Query: 721  TMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHN 900
            TMLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHN
Sbjct: 643  TMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHN 702

Query: 901  PPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEA 1080
            PPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+
Sbjct: 703  PPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHES 762

Query: 1081 NEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGL 1260
            NEEALISKL PAT IFSELSRYYINATHRNSK LANKLGVYSSNSCPLKVTYGFQPQPGL
Sbjct: 763  NEEALISKLPPATAIFSELSRYYINATHRNSKLLANKLGVYSSNSCPLKVTYGFQPQPGL 822

Query: 1261 HLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDS 1440
            HLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDS
Sbjct: 823  HLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDS 882

Query: 1441 IHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDK 1620
            IHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+                 VED 
Sbjct: 883  IHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPVEDG 942

Query: 1621 TTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLT 1800
            TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT
Sbjct: 943  TTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLT 1002

Query: 1801 ISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSIS 1980
            +S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+S
Sbjct: 1003 LSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVS 1062

Query: 1981 QIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMAR 2160
            QIKGGERRQSPDFHEH ILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMAR
Sbjct: 1063 QIKGGERRQSPDFHEHHILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMAR 1122

Query: 2161 YMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEI 2340
            YMRRFRDAL PNNIMINCE+TPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEI
Sbjct: 1123 YMRRFRDALRPNNIMINCERTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEI 1182

Query: 2341 LKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIP 2520
            LKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IP
Sbjct: 1183 LKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIP 1242

Query: 2521 EGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGL 2700
            EGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGL
Sbjct: 1243 EGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGL 1302

Query: 2701 IKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQ 2880
            IKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA LHQ
Sbjct: 1303 IKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQARLHQ 1362

Query: 2881 VTVRDLVKFGGSPFL 2925
            VTVRDLVKFGGS FL
Sbjct: 1363 VTVRDLVKFGGSSFL 1377


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1612 bits (4173), Expect = 0.0
 Identities = 805/975 (82%), Positives = 849/975 (87%)
 Frame = +1

Query: 1    TRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHT 180
            T LRG PGF +PF +P PVNPDDA+T ++F+ F   +      T+  +L   +E    H 
Sbjct: 410  THLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQAT-----ATVEATLAQQSETPDEHQ 464

Query: 181  SLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALN 360
            SL +  + L   QL ALHELGN R G PLLPK  P +  R                    
Sbjct: 465  SLSLKCSTLPEHQLWALHELGNARCGAPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHK 523

Query: 361  QGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATL 540
                +D +P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A  
Sbjct: 524  TTQSSD-LPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADG 582

Query: 541  PEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQ 720
              HW  P + ++L+TLR LNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQ
Sbjct: 583  HAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQ 642

Query: 721  TMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHN 900
            TMLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHN
Sbjct: 643  TMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHN 702

Query: 901  PPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEA 1080
            PPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+
Sbjct: 703  PPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHES 762

Query: 1081 NEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGL 1260
            NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGL
Sbjct: 763  NEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGL 822

Query: 1261 HLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDS 1440
            HLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDS
Sbjct: 823  HLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDS 882

Query: 1441 IHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDK 1620
            IHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+                 VED 
Sbjct: 883  IHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPVEDG 942

Query: 1621 TTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLT 1800
            TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT
Sbjct: 943  TTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLT 1002

Query: 1801 ISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSIS 1980
            +S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+S
Sbjct: 1003 LSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVS 1062

Query: 1981 QIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMAR 2160
            QIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMAR
Sbjct: 1063 QIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMAR 1122

Query: 2161 YMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEI 2340
            YMRRFRDAL PNNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGAMLQFEI
Sbjct: 1123 YMRRFRDALRPNNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGAMLQFEI 1182

Query: 2341 LKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIP 2520
            LKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IP
Sbjct: 1183 LKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIP 1242

Query: 2521 EGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGL 2700
            EGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGL
Sbjct: 1243 EGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGL 1302

Query: 2701 IKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQ 2880
            IKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA LHQ
Sbjct: 1303 IKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQARLHQ 1362

Query: 2881 VTVRDLVKFGGSPFL 2925
            VTVRDLVKFGGS FL
Sbjct: 1363 VTVRDLVKFGGSSFL 1377


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1608 bits (4164), Expect = 0.0
 Identities = 803/975 (82%), Positives = 848/975 (86%)
 Frame = +1

Query: 1    TRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHT 180
            T LRG PGF +PF +P PVNPDDA+T ++F+ F   +      T+  +L   +E    H 
Sbjct: 410  THLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQAT-----ATVEATLAQQSETPDEHQ 464

Query: 181  SLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALN 360
            SL +    L   QL ALHELGN R GGPLLPK  P +  R                    
Sbjct: 465  SLSLKCPTLPEHQLWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHK 523

Query: 361  QGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATL 540
                +D +P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A  
Sbjct: 524  TTQSSD-LPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADG 582

Query: 541  PEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQ 720
              HW  P ++++L+TLRSLNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQ
Sbjct: 583  HAHWQGPDMARILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQ 642

Query: 721  TMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHN 900
             MLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDW KKLPHN
Sbjct: 643  AMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWPKKLPHN 702

Query: 901  PPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEA 1080
            PPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+
Sbjct: 703  PPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHES 762

Query: 1081 NEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGL 1260
            NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQP+PGL
Sbjct: 763  NEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPRPGL 822

Query: 1261 HLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDS 1440
            HLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDS
Sbjct: 823  HLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDS 882

Query: 1441 IHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDK 1620
            IHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+                 VED 
Sbjct: 883  IHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPVEDG 942

Query: 1621 TTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLT 1800
            TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT
Sbjct: 943  TTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLT 1002

Query: 1801 ISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSIS 1980
            +S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+S
Sbjct: 1003 LSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVS 1062

Query: 1981 QIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMAR 2160
            QIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMAR
Sbjct: 1063 QIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMAR 1122

Query: 2161 YMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEI 2340
            YMRRFRDAL PNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEI
Sbjct: 1123 YMRRFRDALRPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEI 1182

Query: 2341 LKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIP 2520
            LKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGP FDANTECNIAYTHTRF+IP
Sbjct: 1183 LKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPAFDANTECNIAYTHTRFDIP 1242

Query: 2521 EGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGL 2700
            EGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGL
Sbjct: 1243 EGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGL 1302

Query: 2701 IKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQ 2880
            IKDPLKLHASLELAKAQKKAGVKDAI+NV+ NYSLDAKLAYSLGDDLQDLLSP QA LHQ
Sbjct: 1303 IKDPLKLHASLELAKAQKKAGVKDAITNVVDNYSLDAKLAYSLGDDLQDLLSPHQARLHQ 1362

Query: 2881 VTVRDLVKFGGSPFL 2925
            VTVRDLVKFGGS FL
Sbjct: 1363 VTVRDLVKFGGSSFL 1377


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
            gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
            [Tulip virus X]
          Length = 1361

 Score = 1360 bits (3521), Expect = 0.0
 Identities = 693/982 (70%), Positives = 775/982 (78%), Gaps = 10/982 (1%)
 Frame = +1

Query: 10   RGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLK 189
            R PPGF +P  +P PVN  DA T  A                            ++ SL 
Sbjct: 412  RTPPGFRHPLCRPLPVNEVDALTTAA---------------------------CANQSLP 444

Query: 190  VGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALNQGD 369
            + +  LS +QL ALH LG+ R  G  LP  +P +   E           T ++A   +  
Sbjct: 445  LDN--LSEDQLEALHVLGSLRTDGESLP--SPPKAPLETGPHPTP----TISAAGPTKTV 496

Query: 370  HTDQVPVNS---------DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRD 522
             T  V V++         DP TLPW AWLP L ALGFEA EIQTDP     IMPITD++ 
Sbjct: 497  PTPNVEVSANPLTGTPLPDPDTLPWKAWLPHLRALGFEASEIQTDPRDHSTIMPITDIQT 556

Query: 523  LPKATLPEHWNEPG-LSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRET 699
            LP  T  E+ +      KV+ TL+ LNR PT W PDR RARA+ SD+KNSRTGKALH+E+
Sbjct: 557  LPHETFDEYDSTSSPFDKVVITLKQLNRSPTPWTPDRLRARAYASDIKNSRTGKALHKES 616

Query: 700  QTWKETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDW 879
            Q WKETQT LT+     L +SVIHGAGGSGKSQALQT+LR +PDLP+EVVLPTNELR DW
Sbjct: 617  QNWKETQTRLTETSETRLGLSVIHGAGGSGKSQALQTMLRNHPDLPVEVVLPTNELRXDW 676

Query: 880  LKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPR 1059
            L+KLPHNPPEQFRTFERAFV S +P+VIFDDYGKLPQG++EAFA+    L+L ILTGDPR
Sbjct: 677  LRKLPHNPPEQFRTFERAFVSSTAPVVIFDDYGKLPQGFLEAFALCRPGLKLAILTGDPR 736

Query: 1060 QSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYG 1239
            QSTHHE+NE+A+I++L PAT IFS L RYYINATHRN K LANKLGVYSSN  PL V+YG
Sbjct: 737  QSTHHESNEQAMIAQLEPATKIFSALCRYYINATHRNVKELANKLGVYSSNPSPLHVSYG 796

Query: 1240 FQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTA 1419
            F+P+PGLHLLVPSLVKKAAF DAGHKVSTYAGCQGITAPKVQILLD+DTTMC+ EVLYTA
Sbjct: 797  FRPEPGLHLLVPSLVKKAAFADAGHKVSTYAGCQGITAPKVQILLDSDTTMCSSEVLYTA 856

Query: 1420 LSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXX 1599
            LSRAVDSIHF+NSNAQSSAFWEKLEATPYLKTFLSLVRE K+ EF+              
Sbjct: 857  LSRAVDSIHFINSNAQSSAFWEKLEATPYLKTFLSLVREHKLEEFTAVEDPPQEVAPPVT 916

Query: 1600 XXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWE 1779
               VE+ + TL   ++SL+DK++REI    HG TNCVQ +D T QLFSHQQAKDEALLWE
Sbjct: 917  HFPVENASHTLGLIQDSLADKYDREILNTNHGFTNCVQTEDLTVQLFSHQQAKDEALLWE 976

Query: 1780 TIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNT 1959
            TI ARL +STPEANL EF AKKDLGD+LW NYH+AMKLPKEQP+FS +LW RCA EVQ T
Sbjct: 977  TIDARLRLSTPEANLAEFHAKKDLGDVLWENYHRAMKLPKEQPDFSPELWERCAAEVQQT 1036

Query: 1960 YLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVM 2139
            YL KS+ QIKGGERRQSPDF E++ILIFLKSQWVKKMEKLGA KIKPGQTIASFQQ AVM
Sbjct: 1037 YLSKSLQQIKGGERRQSPDFPENKILIFLKSQWVKKMEKLGAPKIKPGQTIASFQQAAVM 1096

Query: 2140 LYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDG 2319
            LYGTMARYMRR+RDAL PNNIMINCE+TP DLSRWV N+WDF+KP YANDFTAFDQSQDG
Sbjct: 1097 LYGTMARYMRRYRDALGPNNIMINCERTPADLSRWVRNHWDFTKPXYANDFTAFDQSQDG 1156

Query: 2320 AMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYT 2499
            AMLQFEILKAK+FNLPEWVIEGYLDIKL+P+IF GTL+IMRLTGEGPTFDANTECNIAYT
Sbjct: 1157 AMLQFEILKAKFFNLPEWVIEGYLDIKLTPQIFTGTLAIMRLTGEGPTFDANTECNIAYT 1216

Query: 2500 HTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGY 2679
            HTRF IP+  AQ+YAGDDCAIA+VC EKPSFALLKNRIALQAKPAY PQ RG WAEFCGY
Sbjct: 1217 HTRFHIPDHVAQLYAGDDCAIAEVCQEKPSFALLKNRIALQAKPAYAPQTRGAWAEFCGY 1276

Query: 2680 LITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSP 2859
            LITPKGLIKDPLKLH+SLELAKA +K G KDAI+NV+ANYSLDAK+AYSLGDDLQDLLSP
Sbjct: 1277 LITPKGLIKDPLKLHSSLELAKALRKQGRKDAITNVVANYSLDAKMAYSLGDDLQDLLSP 1336

Query: 2860 RQAHLHQVTVRDLVKFGGSPFL 2925
             QAHLHQVTVRDL KFGGSPFL
Sbjct: 1337 EQAHLHQVTVRDLTKFGGSPFL 1358


>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
            virus]
          Length = 711

 Score = 1327 bits (3433), Expect = 0.0
 Identities = 647/708 (91%), Positives = 674/708 (95%)
 Frame = +1

Query: 802  LQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGK 981
            LQTLLRQ+P LP+EVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ P+VIFDDYGK
Sbjct: 1    LQTLLRQHPSLPVEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGK 60

Query: 982  LPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINAT 1161
            LPQGY+EAFAMTHASLELVILTGDPRQSTHHEANEEALISKL PATTIFSELSRYYINAT
Sbjct: 61   LPQGYLEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLPPATTIFSELSRYYINAT 120

Query: 1162 HRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQ 1341
            HRNSKFLANKLGVYSSNSCPLKVTYG QPQPGLHLLVPSL+KKAAFTDAGHKVSTYAGCQ
Sbjct: 121  HRNSKFLANKLGVYSSNSCPLKVTYGSQPQPGLHLLVPSLMKKAAFTDAGHKVSTYAGCQ 180

Query: 1342 GITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFL 1521
            GITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHF+NSNAQSSAFWEKLEATPYLKTFL
Sbjct: 181  GITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFINSNAQSSAFWEKLEATPYLKTFL 240

Query: 1522 SLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHT 1701
            SLVRED++AEFS                 VED TTTLDDF+E L DKF+REIF +AHGHT
Sbjct: 241  SLVREDRVAEFSASPADPTPVAPPCTHFPVEDGTTTLDDFREELQDKFDREIFNQAHGHT 300

Query: 1702 NCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHK 1881
            NCVQ D+PTTQLF+HQQAKDEALLWETI ARLTIS+PEANL EFRAKKDLGDILW NY K
Sbjct: 301  NCVQTDNPTTQLFAHQQAKDEALLWETINARLTISSPEANLAEFRAKKDLGDILWENYRK 360

Query: 1882 AMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWV 2061
            AMKLP EQP+FSEDLWTRCAEEVQNTYLKKS++QIKGG+RRQSPDFHEHQILIFLKSQWV
Sbjct: 361  AMKLPNEQPDFSEDLWTRCAEEVQNTYLKKSVAQIKGGDRRQSPDFHEHQILIFLKSQWV 420

Query: 2062 KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSR 2241
            KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSR
Sbjct: 421  KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSR 480

Query: 2242 WVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFL 2421
            WVLN+WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFL
Sbjct: 481  WVLNHWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFL 540

Query: 2422 GTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALL 2601
            GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEG AQIYAGDDCAI+QVCPEKPSF+LL
Sbjct: 541  GTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGAAQIYAGDDCAISQVCPEKPSFSLL 600

Query: 2602 KNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAIS 2781
            KNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+
Sbjct: 601  KNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAIT 660

Query: 2782 NVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 2925
            NV+ANYSLDAKLAYSLGDDLQDLLSP QAHLHQVTVRDLVKFGGSPFL
Sbjct: 661  NVVANYSLDAKLAYSLGDDLQDLLSPHQAHLHQVTVRDLVKFGGSPFL 708


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
            gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
            RNA polymerase [Cassava common mosaic virus]
            gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score = 1095 bits (2831), Expect = 0.0
 Identities = 556/897 (61%), Positives = 663/897 (73%), Gaps = 9/897 (1%)
 Frame = +1

Query: 262  PLLPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPV----NSDPATLPWVAWL 429
            P LP ++PE + R               +      ++T+ V      N+  A LPW  W+
Sbjct: 566  PTLP-LSPELEKRHEALKSKAESSEASKTEPRKDENYTEMVNKTLIENAKEAGLPWAVWM 624

Query: 430  PKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFP 609
            PKLNALGFEA E Q  P T  +IMPITD+    K  +P H       ++L  L++L+R P
Sbjct: 625  PKLNALGFEAKEKQISPITKSMIMPITDI----KTGIPVHRETKAPQELLDLLKALSRMP 680

Query: 610  TSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVIHGAGGSG 789
            T W PD  RA++FTSD+KN RTGK L +E+Q+WKE QT+  D+    + +SVIHGAGGSG
Sbjct: 681  TLWTPDTLRAKSFTSDIKNGRTGKCLQQESQSWKEAQTLKVDHNIRPVPLSVIHGAGGSG 740

Query: 790  KSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFD 969
            KS ALQ LLR +P+LPI+V+LPTNELR+DWL KLP N PE FRTFE+A++ + +P +I D
Sbjct: 741  KSAALQDLLRDHPELPIQVILPTNELRMDWLSKLPRNRPENFRTFEKAYLQTNAPSIIMD 800

Query: 970  DYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYY 1149
            DYGKLPQGY+EAFA+TH ++EL++LTGD +QS HHE NE+A+I++L P+T IFS+ SRYY
Sbjct: 801  DYGKLPQGYVEAFAVTHPNVELIVLTGDNKQSVHHETNEQAMIAQLEPSTQIFSQFSRYY 860

Query: 1150 INATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTY 1329
            INATHRN+K LAN LGVYS N+  LK+T+GFQP   +HLLVPSL+KKAAF++AGHK STY
Sbjct: 861  INATHRNAKKLANMLGVYSDNNKELKITHGFQPIKDIHLLVPSLIKKAAFSEAGHKTSTY 920

Query: 1330 AGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYL 1509
            AGCQGITA K+QILLD++T MC++EVLYTALSRAVDSIHF+N+   SS FWEKLEATPYL
Sbjct: 921  AGCQGITARKLQILLDSNTPMCSQEVLYTALSRAVDSIHFINTAPTSSNFWEKLEATPYL 980

Query: 1510 KTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEA 1689
            KTFLS+VREDKI E+                  VE+  T L++F E L+ K EREIF E+
Sbjct: 981  KTFLSMVREDKILEWRPKEPEPAKEEPPKTHFPVENGNTILEEFTEELAQKHEREIFNES 1040

Query: 1690 HGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWA 1869
            HGHTNCVQ D+   Q  SHQQAKDEALLWETIKARL IS  + N  EF  KKD+GDILW 
Sbjct: 1041 HGHTNCVQTDNKIIQTLSHQQAKDEALLWETIKARLVISHKQHNWTEFVKKKDIGDILWL 1100

Query: 1870 NYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLK 2049
            NY +AM LP++   F E+LW   A E+Q+TYL KS   +K GERRQSPDF E  ILIFLK
Sbjct: 1101 NYKRAMHLPEDPIPF-EELWELAAREIQHTYLSKSTQMLKNGERRQSPDFGEKDILIFLK 1159

Query: 2050 SQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQ 2229
            SQWVKKMEKLGA KIKPGQTIASFQQ AVMLYGTMARYMRR RD   P +IMINCE+TP 
Sbjct: 1160 SQWVKKMEKLGAPKIKPGQTIASFQQSAVMLYGTMARYMRRIRDIYMPEHIMINCERTPT 1219

Query: 2230 DLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSP 2409
            DLS W LNYW+F KPSYANDFTAFDQSQDGAMLQFEILKAK+ N+PEWV+EGYLDIKL  
Sbjct: 1220 DLSYWALNYWNFDKPSYANDFTAFDQSQDGAMLQFEILKAKHHNIPEWVLEGYLDIKLDS 1279

Query: 2410 KIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPS 2589
            +IFLGTLSIMRLTGE  TFDANTECNIAYTHTRF+IPEG AQ     D A+   C EKPS
Sbjct: 1280 RIFLGTLSIMRLTGEYQTFDANTECNIAYTHTRFDIPEGVAQ-----DSAMDATCLEKPS 1334

Query: 2590 FALLKNRIALQ-----AKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQK 2754
            F L+++ ++L+      KP    Q  G+WAEFCGYLITPKGLIKDPLKL AS  LAK + 
Sbjct: 1335 FKLIESELSLKLYAGDCKPCLKAQIPGEWAEFCGYLITPKGLIKDPLKLAASFRLAKERG 1394

Query: 2755 KAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 2925
            K      + N + NY+ D KLAY LGDDL +LL+P QA LHQVTVRD++K G S  L
Sbjct: 1395 KR----ELDNCLENYARDMKLAYDLGDDLLELLTPEQAQLHQVTVRDMIKLGASDIL 1447


>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score = 1078 bits (2787), Expect = 0.0
 Identities = 546/848 (64%), Positives = 631/848 (74%), Gaps = 1/848 (0%)
 Frame = +1

Query: 385  PVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITD-VRDLPKATLPEHWNEP 561
            PV++    LPW  W P L  LGF+A EIQ  P    VIMPIT+ V  LP + +  H    
Sbjct: 543  PVSTLEDALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQIQGH---- 598

Query: 562  GLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNV 741
                V+  L  L+R PT W P   RAR++TSD+KN RTG  L +E+ TWKETQT+  + +
Sbjct: 599  --ELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKETQTLKAERL 656

Query: 742  TANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRT 921
               + +SVIHG GGSGKS A Q LLRQ+PD+ ++VVLPTNELRLDW+ K P   PE+ +T
Sbjct: 657  EKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPKVRPEKIKT 716

Query: 922  FERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALIS 1101
            +ERAF    SP+V+FDDYGKLP GYIEA+      +ELVILTGD RQSTHHE NE+A+IS
Sbjct: 717  YERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHENNEQAMIS 776

Query: 1102 KLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSL 1281
            +LAPAT +F  L RYYINATHRN + LANKL VYS      K+T GFQP   LHLLVPSL
Sbjct: 777  QLAPATEVFQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKDLHLLVPSL 836

Query: 1282 VKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSN 1461
            +KK+A+ + GHKVSTYAGCQGITAPK+QILLDNDT MC+KEVLYTALSRAV SIHF+N+ 
Sbjct: 837  LKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVHSIHFINTG 896

Query: 1462 AQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDF 1641
               S+FWEKLEATPYLK FLS VRE+ IA                    VE+ +  L  +
Sbjct: 897  PTHSSFWEKLEATPYLKAFLSTVREEAIAAHQLPNADPRPDPEPKTHFPVENTSCALGAY 956

Query: 1642 KESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEAN 1821
             E + +KFEREIFTE  GHTNCVQ  +P  QLF HQQAKDEALLWETIKARLTIS+PEAN
Sbjct: 957  MEKVPEKFEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETIKARLTISSPEAN 1016

Query: 1822 LEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGER 2001
             EEF  KKD+GDILW +Y KAM LP+E   FSEDLW   A EVQNTYL K ++ +K GER
Sbjct: 1017 WEEFYRKKDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAAEVQNTYLSKPMNMLKNGER 1076

Query: 2002 RQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRD 2181
            RQSPDF +HQIL+FLKSQWVKKMEKLG  KIK GQTIASFQQHAVMLYGTMARYMRRFR+
Sbjct: 1077 RQSPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQHAVMLYGTMARYMRRFRE 1136

Query: 2182 ALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFN 2361
             L PN+I INCE TP+DLSR++ NYWDF   SYANDFTAFDQSQDGAMLQFEILKAK+FN
Sbjct: 1137 VLGPNHIKINCEATPKDLSRFIQNYWDFKPASYANDFTAFDQSQDGAMLQFEILKAKHFN 1196

Query: 2362 LPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIY 2541
            +PE +I+GYLDIKL+ KIFLG L IMRLTGEGPTFDANTECNIAYTHTRF+IP GTAQ+Y
Sbjct: 1197 IPEEIIQGYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTECNIAYTHTRFDIPPGTAQLY 1256

Query: 2542 AGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKL 2721
            AGDD AIA V PE+PSF L+   +AL+AKP Y PQ  G WAEFCGYLITPKGLIKDP KL
Sbjct: 1257 AGDDSAIACVPPERPSFKLIAKSLALEAKPVYAPQVAGAWAEFCGYLITPKGLIKDPAKL 1316

Query: 2722 HASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLV 2901
             ASL+L +A   +G K  +     NY  D  LAY+L D L ++LSP QA LHQ TVR LV
Sbjct: 1317 FASLKLLQA--TSGSKKELVEAAGNYERDVGLAYALKDSLYEILSPEQAELHQETVRTLV 1374

Query: 2902 KFGGSPFL 2925
            K     +L
Sbjct: 1375 KLTKGTYL 1382


>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
            viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score = 1074 bits (2778), Expect = 0.0
 Identities = 545/848 (64%), Positives = 630/848 (74%), Gaps = 1/848 (0%)
 Frame = +1

Query: 385  PVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITD-VRDLPKATLPEHWNEP 561
            PV++    LPW  W P L  LGF+A EIQ  P    VIMPIT+ V  LP + +  H    
Sbjct: 543  PVSALENALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQIQGH---- 598

Query: 562  GLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNV 741
                V+  L  L+R PT W P   RAR++TSD+KN RTG  L +E+ TWKETQT+  + +
Sbjct: 599  --ELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKETQTLKAERL 656

Query: 742  TANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRT 921
               + +SVIHG GGSGKS A Q LLRQ+PD+ ++VVLPTNELRLDW+ K P   PE+ +T
Sbjct: 657  EKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPKVRPEKIKT 716

Query: 922  FERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALIS 1101
            +ERAF    SP+V+FDDYGKLP GYIEA+      +ELVILTGD RQSTHHE NE+A+IS
Sbjct: 717  YERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHENNEQAMIS 776

Query: 1102 KLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSL 1281
            +LAPAT +F  L RYYINATHRN + LANKL VYS      K+T GFQP   LHLLVPSL
Sbjct: 777  QLAPATEVFQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKDLHLLVPSL 836

Query: 1282 VKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSN 1461
            +KK+A+ + GHKVSTYAGCQGITAPK+QILLDNDT MC+KEVLYTALSRAV SIHF+N+ 
Sbjct: 837  LKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVHSIHFINTG 896

Query: 1462 AQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDF 1641
               S+FWEKLEATPYLK FLS VRE+ IA                    VE+ +  L  +
Sbjct: 897  PTHSSFWEKLEATPYLKAFLSTVREEAIAAHQLPSADPRPDPEPKTHFPVENTSCALGAY 956

Query: 1642 KESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEAN 1821
             E + +KFEREIFTE  GHTNCVQ  +P  QLF HQQAKDEALLWETIKARLTIS+PEAN
Sbjct: 957  MEKVPEKFEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETIKARLTISSPEAN 1016

Query: 1822 LEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGER 2001
             EEF  KKD+GDILW +Y KAM LP+E   FSEDLW   A EVQNTYL K ++ +K GER
Sbjct: 1017 WEEFYKKKDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAAEVQNTYLSKPMNMLKNGER 1076

Query: 2002 RQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRD 2181
            RQSPDF +HQIL+FLKSQWVKKMEKLG  KIK GQTIASFQQHAVMLYGTMARYMRRFR+
Sbjct: 1077 RQSPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQHAVMLYGTMARYMRRFRE 1136

Query: 2182 ALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFN 2361
            AL PN+I INCE TP+DLSR++ NYWDF   SYANDFTAFDQSQD AMLQFEILKAK+FN
Sbjct: 1137 ALGPNHIKINCEATPKDLSRFIQNYWDFKPASYANDFTAFDQSQDAAMLQFEILKAKHFN 1196

Query: 2362 LPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIY 2541
            +P  +I+GYLDIKL+ KIFLG L IMRLTGEGPTFDANTECNIAYTHTRF+IP GTAQ+Y
Sbjct: 1197 IPGEIIQGYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTECNIAYTHTRFDIPPGTAQLY 1256

Query: 2542 AGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKL 2721
            AGDD AIA V PE+PSF L+   +AL+AKP Y PQ  G WAEFCGYLITPKGLIKDP KL
Sbjct: 1257 AGDDSAIACVPPERPSFKLIAKSLALEAKPVYAPQVAGAWAEFCGYLITPKGLIKDPAKL 1316

Query: 2722 HASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLV 2901
             ASL+L +A   +G K  +     NY  D  LAY+L D L ++LSP QA LHQ TVR LV
Sbjct: 1317 FASLKLLQA--TSGSKKELVEAAGNYERDVGLAYALKDSLYEILSPEQAELHQETVRTLV 1374

Query: 2902 KFGGSPFL 2925
            K     +L
Sbjct: 1375 KLTKGAYL 1382


>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
            [Allium virus X]
          Length = 1701

 Score =  952 bits (2462), Expect = 0.0
 Identities = 486/864 (56%), Positives = 605/864 (70%), Gaps = 1/864 (0%)
 Frame = +1

Query: 337  TKASAALNQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPST-GEVIMPITD 513
            T+ S     G H    P N  P  LPW  W+PKLNALGF  L   +DP    ++I PIT 
Sbjct: 846  TETSVRDASGFHVAPPPENPAPP-LPWEQWIPKLNALGFSGLARISDPQDKDQLICPITC 904

Query: 514  VRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHR 693
            ++      LPE  +    + +LTT+   +R P ++  + +RA+A+ SDV+NSRTG  L  
Sbjct: 905  IKSGFGIFLPEDTDTKPFTDLLTTM---HRMPCAYKVNNSRAKAYASDVENSRTGLLLRS 961

Query: 694  ETQTWKETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRL 873
            +   WKE  TM  +     +A+SVIHGAGGSGKS ALQ L+R+NP+L   VV PTNELRL
Sbjct: 962  QPDHWKEALTMQAETADHTIALSVIHGAGGSGKSHALQQLIRENPELNFLVVCPTNELRL 1021

Query: 874  DWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGD 1053
            DWL KLP     + +TFE+A   S +  +IF DY KLP GYIE +     +  L ILTGD
Sbjct: 1022 DWLAKLPKVELHRIKTFEKALADSTAATIIFGDYSKLPAGYIECYLAARPTATLAILTGD 1081

Query: 1054 PRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVT 1233
            PRQS++HE+NE A+IS+LAP+T+ F +  RYYINATHRN + LA  LGVYS  +    ++
Sbjct: 1082 PRQSSYHESNEGAMISQLAPSTSEFGQYCRYYINATHRNKQDLARMLGVYSERTGLTSIS 1141

Query: 1234 YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLY 1413
               +P    HLLVPS++KK  + + G+K STYAGCQGITAP++QILLD DTT+C  EVLY
Sbjct: 1142 MSSRPLTDTHLLVPSIIKKRTYMELGYKTSTYAGCQGITAPRLQILLDCDTTLCADEVLY 1201

Query: 1414 TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXX 1593
            TALSRAV  IHF+N+ A S AFW+KL ATPYLKTFL   RE+++ E              
Sbjct: 1202 TALSRAVHGIHFINTGATSGAFWDKLNATPYLKTFLDFTREERLKESQPREQEPTEPEGP 1261

Query: 1594 XXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALL 1773
                 VE++   L++  E L +K +REI    HGHTNCVQ +D   QLFSHQQAKD+ALL
Sbjct: 1262 TTHFPVENEKFVLEEQVEELLEKHDREILRPDHGHTNCVQTEDAVIQLFSHQQAKDQALL 1321

Query: 1774 WETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQ 1953
            W TI+ARL IS P+AN+ EF AKK++GD+L+ +YH+AMKLP +   F EDLW  CA+EVQ
Sbjct: 1322 WATIEARLKISNPKANIAEFNAKKEIGDVLFEHYHQAMKLPDKPIPFMEDLWVACAQEVQ 1381

Query: 1954 NTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHA 2133
             TYL K I+ +K GE RQSPDF ++ I +FLKSQWVKKMEKLGA KIKPGQTIASFQQ A
Sbjct: 1382 GTYLSKPINMLKNGEYRQSPDFDKNTIALFLKSQWVKKMEKLGAPKIKPGQTIASFQQSA 1441

Query: 2134 VMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQ 2313
            VMLYGTMARYMRR R+A  P  IMINCEK PQ LS W+ NYW F+  +YANDFT FDQSQ
Sbjct: 1442 VMLYGTMARYMRRMREAFQPPEIMINCEKDPQTLSHWIQNYWKFNSYAYANDFTQFDQSQ 1501

Query: 2314 DGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIA 2493
            DGAMLQFEILKAK+ ++PEWV+EGYLDIK + K+F G LSIMRLTGEGPTFDANTECNIA
Sbjct: 1502 DGAMLQFEILKAKHHSIPEWVLEGYLDIKTNAKVFSGVLSIMRLTGEGPTFDANTECNIA 1561

Query: 2494 YTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFC 2673
            YTH RF++P+GTAQ+YAGDD A++ + PE+PSFA  K ++ L +KPA   Q+RG WAEFC
Sbjct: 1562 YTHLRFDVPKGTAQLYAGDDSALSCLPPERPSFADFKQQLTLTSKPALFAQKRGFWAEFC 1621

Query: 2674 GYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLL 2853
            GYLITP G++KDP KL A++ LA+ Q K      +     +++LD KLAY   D L ++L
Sbjct: 1622 GYLITPLGIMKDPAKLAATVVLAQKQNK------LHECWRSHALDLKLAYVHRDALTEVL 1675

Query: 2854 SPRQAHLHQVTVRDLVKFGGSPFL 2925
            S +Q  LHQ+TVR LVK G S  L
Sbjct: 1676 SEKQQELHQLTVRTLVKSGASEIL 1699


>gb|AFM77886.1| replicase [Hosta virus X]
          Length = 1473

 Score =  946 bits (2445), Expect = 0.0
 Identities = 492/870 (56%), Positives = 605/870 (69%), Gaps = 11/870 (1%)
 Frame = +1

Query: 337  TKASAALNQG-----DHT-DQVPVNSDPA--TLPWVAWLPKLNALGFEALEIQTDPSTGE 492
            ++AS+A  +G     D T +Q P +  P    LPW  WL +L A+GF+  E Q D   G 
Sbjct: 591  SQASSATTRGRDPVIDRTREQAPTSITPEEEALPWKHWLKQLKAVGFKGNETQMD-GDGT 649

Query: 493  VIMPITDVRDLPKATLPEHWNEPGLSK-VLTTLRSLNRFPTSWCPDRARARAFTSDVKNS 669
             I PI  ++ +P +      N   +SK +L TLRS+ R PTSW PD +RARA+TSD+KN 
Sbjct: 650  TISPIEQIKSMPVS------NPSSVSKEILETLRSVARAPTSWKPDASRARAYTSDIKNR 703

Query: 670  RTGKALHRETQTWKETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIE-- 843
            RTG A+H   Q WKET   + +N    L ISVIHGAGGSGKS+ LQ +L +   L  E  
Sbjct: 704  RTGAAVHMAPQAWKETMDFIAENAERTLHISVIHGAGGSGKSRCLQEMLNKFHFLFDETL 763

Query: 844  VVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHA 1023
            VV PTNELR DW+ KLP + P    TFERA +      VIFDDY KLP G+IEA+++   
Sbjct: 764  VVCPTNELRRDWIDKLPLSEPGSVLTFERALMNPAKGTVIFDDYTKLPAGFIEAYSICQP 823

Query: 1024 SLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVY 1203
            ++ELVILTGD +Q++HHE+N+ A+I+ L PA   FS+  RYY+NATHRN + LAN LG+Y
Sbjct: 824  NVELVILTGDAKQASHHESNDNAMIAGLDPAALEFSKFCRYYLNATHRNPRNLANALGIY 883

Query: 1204 SSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDND 1383
            S     LKVT+     P +H+LVPSL+KKA   + GHK STYAGCQG+T  KVQI LD++
Sbjct: 884  SEKPGNLKVTFTNHLLPEMHILVPSLLKKATLEELGHKCSTYAGCQGVTLSKVQIYLDSN 943

Query: 1384 TTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXX 1563
            TT+C+ EVLYTALSRAV+ I+FVNS   +  FW KLEATPYLKTFL L RE+KI E +  
Sbjct: 944  TTLCSNEVLYTALSRAVEQINFVNSGPFNGPFWAKLEATPYLKTFLRLTREEKINEITPE 1003

Query: 1564 XXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFS 1743
                           VE          E + +K  REI+ + HGHTNCVQ D+P  Q+F+
Sbjct: 1004 EPKPKEPEPPKTHFPVETSAHLYSSITEEMPEKHAREIYNKTHGHTNCVQTDEPLVQMFA 1063

Query: 1744 HQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSED 1923
            HQQAKDEAL WETI+ARL I+T EAN++E   K+D+GD+L+  YHKAM LPK+   F  D
Sbjct: 1064 HQQAKDEALFWETIEARLRITTSEANVQELNEKRDIGDLLFHAYHKAMGLPKDPIPFEND 1123

Query: 1924 LWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPG 2103
            LW  CA+EVQ TYL K I+ IK GE+RQ PDF ++ I++FLKSQWVKKMEKLGA  IKPG
Sbjct: 1124 LWETCAQEVQQTYLSKPINLIKNGEKRQGPDFDKNAIMLFLKSQWVKKMEKLGAPTIKPG 1183

Query: 2104 QTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYA 2283
            QTIASF Q  VMLYGTMARYMRR RD   P +I+INCEKTP  +S +V   WDFS  +YA
Sbjct: 1184 QTIASFHQITVMLYGTMARYMRRIRDRFCPKHILINCEKTPTQISDFVKAQWDFSDFAYA 1243

Query: 2284 NDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPT 2463
            NDFTAFDQSQDGAMLQFEI+KAK+ N+PE +I GY+DIK + KIFLGTL+IMRLTGEGPT
Sbjct: 1244 NDFTAFDQSQDGAMLQFEIIKAKFHNIPEDIILGYMDIKTNAKIFLGTLAIMRLTGEGPT 1303

Query: 2464 FDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTP 2643
            FDANTECNIAYTH RF +PE  AQ+YAGDD A+++VCPEK SF    +R+ L++KP   P
Sbjct: 1304 FDANTECNIAYTHLRFNVPENVAQVYAGDDSALSKVCPEKDSFKQFADRLTLKSKPQVFP 1363

Query: 2644 QERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAY 2823
            Q +G WAEFCG LITP+G+IKDP+KLHAS  LA    K G    I   + +Y  D KL+Y
Sbjct: 1364 QTQGAWAEFCGLLITPRGIIKDPVKLHASWVLA---TKLGTLQQI-KCVNSYGEDLKLSY 1419

Query: 2824 SLGDDLQDLLSPRQAHLHQVTVRDLVKFGG 2913
             LGD LQ+LLS  Q   HQVTVR+LVKF G
Sbjct: 1420 DLGDHLQELLSESQCRTHQVTVRELVKFAG 1449


>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
            RecName: Full=RNA replication protein; AltName: Full=176
            kDa protein; AltName: Full=ORF1 protein; Includes:
            RecName: Full=RNA-directed RNA polymerase; Includes:
            RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
            protein product [Papaya mosaic virus]
            gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
            virus]
          Length = 1547

 Score =  939 bits (2426), Expect = 0.0
 Identities = 483/842 (57%), Positives = 594/842 (70%), Gaps = 3/842 (0%)
 Frame = +1

Query: 409  LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTL 588
            LPW AW+PKL  LGF+  ++Q DP+ G +I PI ++R +PK   PE   E     V  TL
Sbjct: 707  LPWKAWIPKLQNLGFQGRQLQYDPN-GALISPIEEIRSMPKCK-PEGVPEV----VYKTL 760

Query: 589  RSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVI 768
              L R PT + P+  RARA+TSDVKN R G  L ++ + W      L +     LAISVI
Sbjct: 761  DGLARAPTPYSPNPIRARAYTSDVKNCRIGALLRQQGKEWGCRFDALVEAGKRELAISVI 820

Query: 769  HGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSK 948
            HGAGGSGKSQALQTL++ NP+L I VVLPTNELRLDWL+KLP  P E+F+TFE+A +   
Sbjct: 821  HGAGGSGKSQALQTLIKDNPELDITVVLPTNELRLDWLRKLPKAPQEKFKTFEKALLAPP 880

Query: 949  SPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIF 1128
            +PIVIFDDYGKLP GY+EAF +  ++++L+ILTGD +QS HHE+NE A  S + P     
Sbjct: 881  TPIVIFDDYGKLPAGYVEAFCLYFSTVQLIILTGDCKQSVHHESNENATTSSIEPLVKEA 940

Query: 1129 SELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDA 1308
            SEL RYYINATHRN K LANKLGVYS  +   +VT+G  P PGLH+LVPSL KK AF++ 
Sbjct: 941  SELCRYYINATHRNKKDLANKLGVYSEKTGLTEVTHGTTPIPGLHMLVPSLYKKQAFSEM 1000

Query: 1309 GHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEK 1488
            GHKVSTYAGCQGITAPK+QILL  +T++C++EVLYTALSRAV SIHFVN++  + AFW+K
Sbjct: 1001 GHKVSTYAGCQGITAPKIQILLTEETSLCSREVLYTALSRAVHSIHFVNASPNNQAFWKK 1060

Query: 1489 LEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFE 1668
            LE TPYLK FLS +RE+                        ED     ++  E + +K E
Sbjct: 1061 LECTPYLKAFLSTLREEVAQPIEEKKAEPTPVEPPRTHIAKEDAMVEYENVIEKMPEKHE 1120

Query: 1669 REIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKD 1848
            REIF+E HGH+NCVQ +DP  Q+FSHQQAKD+ LLW TI+ARL IS P+AN +E+  K+ 
Sbjct: 1121 REIFSEKHGHSNCVQTEDPFIQMFSHQQAKDDTLLWATIEARLVISNPKANWQEYLEKRP 1180

Query: 1849 LGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEH 2028
            +G++L+ +Y +AM LPK    F EDLW     EVQ TYL K  + IK G  RQSPD+  +
Sbjct: 1181 VGEVLFESYKRAMHLPKMPIPFEEDLWNSSMHEVQKTYLSKPENMIKNGMARQSPDYDPN 1240

Query: 2029 QILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMI 2208
             I +FLKSQWVKKMEKLGA KIKPGQTIASF Q  VML+GTMARYMRR R+   P +I I
Sbjct: 1241 VISLFLKSQWVKKMEKLGAIKIKPGQTIASFHQATVMLFGTMARYMRRMREVFQPAHIRI 1300

Query: 2209 NCEKTPQDLSRWVL---NYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVI 2379
            NCE TP+DLS W      +W F  PS ANDFTAFDQSQDGAMLQFEILKA++ ++PE ++
Sbjct: 1301 NCEMTPEDLSSWAAGEGGHWKFKGPSLANDFTAFDQSQDGAMLQFEILKARHHSIPEDIL 1360

Query: 2380 EGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCA 2559
            + YL IK + KIFLGTL+IMRLTGEGPTFDANTECNIA+THT+F IPEGTAQ+YAGDD A
Sbjct: 1361 DAYLTIKTNSKIFLGTLAIMRLTGEGPTFDANTECNIAFTHTKFNIPEGTAQLYAGDDSA 1420

Query: 2560 IAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLEL 2739
            I  +   +PSF +++ ++ L++KP    Q++G WAEFCG+ ITPKGLIKDP KLHAS  L
Sbjct: 1421 IDGLPALRPSFKMIEQKLTLRSKPQVALQQKGDWAEFCGFRITPKGLIKDPKKLHASWML 1480

Query: 2740 AKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSP 2919
             K  KK  VK    NV+ +Y LD  LAY   D L +LLS  +   H  TVR +VK GG  
Sbjct: 1481 EK--KKGNVK----NVLRSYELDLALAYQHKDSLHELLSEEELKYHYETVRSIVKSGGGG 1534

Query: 2920 FL 2925
             L
Sbjct: 1535 VL 1536


>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
          Length = 1670

 Score =  937 bits (2421), Expect = 0.0
 Identities = 469/842 (55%), Positives = 599/842 (71%), Gaps = 3/842 (0%)
 Frame = +1

Query: 409  LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPK--ATLPEHWNEPGLSKVLT 582
            LPW  WL  LN+L F+  +   D   G++I PI D + LPK    LPE         +L 
Sbjct: 840  LPWKLWLGVLNSLNFKGNQRILD-GNGQLIFPIKDNKSLPKYEGRLPE-------PHLLE 891

Query: 583  TLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTAN-LAI 759
             L+  +R+P  +  D  + RAF SDVKN+RTG    ++   WKE  T + ++     +A+
Sbjct: 892  QLKEASRYPCPYRIDHKQGRAFASDVKNNRTGSLTTKQPDEWKEAFTRMAESPEQRTVAL 951

Query: 760  SVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV 939
            +VIHGAGGSGKSQ LQ  L +NP+  I  +LPTNELR DWL KLP  P    +TFERA +
Sbjct: 952  TVIHGAGGSGKSQLLQRYLMENPECKINTILPTNELRNDWLTKLPKMPLTAIQTFERALI 1011

Query: 940  CSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPAT 1119
              + P+VIFDDY KLP GYI+AF   H ++E  ILTGDPRQST HE+NE+A+I+ L+ +T
Sbjct: 1012 SPQKPVVIFDDYSKLPAGYIDAFLSLHKNVEWAILTGDPRQSTFHESNEQAMINHLSKST 1071

Query: 1120 TIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAF 1299
              FS+ SRYYINATHRN + LA  LGVYS  +    ++   +P+P  HLLVPSL+KK ++
Sbjct: 1072 EHFSQFSRYYINATHRNKQDLARFLGVYSEKTGLTSISMSSRPEPDWHLLVPSLIKKRSY 1131

Query: 1300 TDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAF 1479
            T+ G+K STYAGCQGITA +VQ+LLD DTT+C+ +VLYTALSRAV ++HF+N++A SSAF
Sbjct: 1132 TEMGYKTSTYAGCQGITADRVQVLLDTDTTLCSDQVLYTALSRAVHAVHFINTSATSSAF 1191

Query: 1480 WEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSD 1659
            W+KL +TPYLKTFLS +RED++ E                   VE++  +L+D  E L +
Sbjct: 1192 WDKLNSTPYLKTFLSTLREDRLREEGPKPETPEEPKPATTHFPVENENLSLEDKVEELLE 1251

Query: 1660 KFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRA 1839
            K ERE+++  HG++NCVQ DDP  QLFSHQQAKD+ LLW TI+ARL IS P+AN+EEFR 
Sbjct: 1252 KHERELYSSDHGYSNCVQTDDPVVQLFSHQQAKDQTLLWATIEARLKISNPKANMEEFRM 1311

Query: 1840 KKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDF 2019
            KK++GD+LW NY +AMKLP +  EFS +LW  CAEEVQ TYL K ++ IK GE RQSPDF
Sbjct: 1312 KKNVGDVLWLNYKRAMKLPDKPIEFSHELWHACAEEVQKTYLSKPLNMIKNGENRQSPDF 1371

Query: 2020 HEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNN 2199
             +H I +FLKSQWVKK+EKLGA KIKPGQTIASFQQ  VMLYGTMARYMRR R A  P N
Sbjct: 1372 DKHTISLFLKSQWVKKLEKLGAPKIKPGQTIASFQQATVMLYGTMARYMRRIRQAFQPPN 1431

Query: 2200 IMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVI 2379
            I +NCE+TPQ L+ ++ + W F +P+YANDFT FDQSQDGAMLQFE+LKAK+ N+PE +I
Sbjct: 1432 IQLNCEQTPQQLTTFIKDQWSFDQPAYANDFTQFDQSQDGAMLQFEVLKAKHHNIPEAII 1491

Query: 2380 EGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCA 2559
            +GY+DIK + K+F G L+IMRLTGEGPTFDANTECNIA+ HTRF I + TAQ+YAGDD A
Sbjct: 1492 QGYIDIKTNAKVFTGVLAIMRLTGEGPTFDANTECNIAFNHTRFHISDDTAQLYAGDDTA 1551

Query: 2560 IAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLEL 2739
             +++  EK SF  +  ++AL +KP +  Q++G+WAEFCGY ITP GLIK+P KL A+L L
Sbjct: 1552 FSKIPIEKVSFQGVAKQLALTSKPLFYKQKKGEWAEFCGYSITPLGLIKEPKKLQANLTL 1611

Query: 2740 AKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSP 2919
            A  Q K  +KD ++    +YS D  LAY   D+L ++    Q   HQ TVR LVKFGG+ 
Sbjct: 1612 AIKQNK--IKDTVN----SYSQDVALAYQHKDELYEIFDENQMRDHQTTVRTLVKFGGNE 1665

Query: 2920 FL 2925
             L
Sbjct: 1666 IL 1667


>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  934 bits (2415), Expect = 0.0
 Identities = 482/846 (56%), Positives = 589/846 (69%), Gaps = 3/846 (0%)
 Frame = +1

Query: 397  DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKV 576
            +P  LPW AWL KL  LGF   ++Q DP+ G +I PI  ++ LPK + PE  N P L K+
Sbjct: 697  EPDNLPWKAWLEKLRNLGFRGTQLQYDPN-GALISPIESIKSLPKCS-PEKVN-PSLLKM 753

Query: 577  LTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLA 756
            L       R PT + P   RA+A++SDVKNSR G  L ++ + W      L +N    LA
Sbjct: 754  LNDQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLA 810

Query: 757  ISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAF 936
            ISVIHGAGGSGKS+ALQ  L+ NPD  + +VLPTNELRLDWLKKLP  P +Q +TFE+A 
Sbjct: 811  ISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKAL 870

Query: 937  VCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPA 1116
            +    P VIFDDYGKLP GYIEAF+   +S+EL++LTGD +QS HHE+NE A+ S + P 
Sbjct: 871  LAPIKPTVIFDDYGKLPAGYIEAFSCYMSSVELLVLTGDSKQSVHHESNENAMSSLIEPF 930

Query: 1117 TTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAA 1296
            T    + SRYYINATHRN + LANKLGVYS  +    +T G  P PGLHLLVPSL KK A
Sbjct: 931  TLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKEA 990

Query: 1297 FTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSA 1476
            F++ GHKVSTYAGCQG+TAP+VQILL  +T+MC++EV+YTALSRAV SIHFVN    + A
Sbjct: 991  FSEMGHKVSTYAGCQGLTAPRVQILLSEETSMCSREVIYTALSRAVHSIHFVNCGPNNQA 1050

Query: 1477 FWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLS 1656
            FW KLE+TPYLK FLS +RED                       V+      +D  + + 
Sbjct: 1051 FWAKLESTPYLKAFLSTLREDAAPVVKPKEEAPAPVDPPKTHIPVDSAMPIYEDLLDQMP 1110

Query: 1657 DKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFR 1836
            +K EREIF+E HGH+NCVQ +D   Q+FSHQQAKDE LLW TI+ARL IS P+AN +EF 
Sbjct: 1111 EKHEREIFSERHGHSNCVQTEDTFVQMFSHQQAKDETLLWATIEARLVISNPKANWQEFM 1170

Query: 1837 AKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPD 2016
             K+ +GD+L+  Y +AM LP E   F   LW  C  EVQ TYL K I+ +K G+ RQSPD
Sbjct: 1171 EKRPIGDVLFGFYREAMGLPTEPIAFEPQLWESCIHEVQRTYLAKPINMLKNGQARQSPD 1230

Query: 2017 FHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPN 2196
            +  + I +FLKSQWVKKMEKLGA KIKPGQTIASF Q  VML+GTMARYMRR R+   P 
Sbjct: 1231 YDPNMISLFLKSQWVKKMEKLGALKIKPGQTIASFHQATVMLFGTMARYMRRMREIFQPK 1290

Query: 2197 NIMINCEKTPQDLSRWVL---NYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP 2367
            NI INCE TP+DL+ W +     W F+ PS ANDFTAFDQSQDGAMLQFE+LKAK+ ++P
Sbjct: 1291 NIAINCEMTPEDLTDWAVGSAGQWKFAGPSLANDFTAFDQSQDGAMLQFEVLKAKHHSIP 1350

Query: 2368 EWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAG 2547
            E V++ YL IK + KIFLGTL+IMRLTGEGPTFDANTECNIA+TH +F+IP+GTAQ+YAG
Sbjct: 1351 EDVLDAYLHIKTNSKIFLGTLTIMRLTGEGPTFDANTECNIAFTHAKFQIPKGTAQLYAG 1410

Query: 2548 DDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA 2727
            DD AI    P + SF L++ ++ L++KPA   QE+G WAEFCGY ITPKG IKDP KLHA
Sbjct: 1411 DDSAIDGNPPVRESFRLVEQKLKLRSKPAIAMQEKGDWAEFCGYRITPKGFIKDPKKLHA 1470

Query: 2728 SLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKF 2907
            SL L   +KK G    + NV+ +Y LD  LAY   D+L +LLS  +  LH  TVR LVK 
Sbjct: 1471 SLVL---EKKRG---NLKNVLRSYELDLALAYQHRDELHELLSEEELRLHYDTVRTLVKS 1524

Query: 2908 GGSPFL 2925
            GG   L
Sbjct: 1525 GGGEVL 1530


>ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1|
            replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  932 bits (2410), Expect = 0.0
 Identities = 480/846 (56%), Positives = 585/846 (69%), Gaps = 3/846 (0%)
 Frame = +1

Query: 397  DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKV 576
            +P  LPW AWL KL  LGF   ++Q DP+ G +I PI  ++ LPK + PE  N P L K+
Sbjct: 697  EPDNLPWKAWLEKLRNLGFRGTQLQYDPN-GALISPIESIKSLPKCS-PEKVN-PSLLKM 753

Query: 577  LTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLA 756
            L    S  R PT + P   RA+A++SDVKNSR G  L ++ + W      L +N    LA
Sbjct: 754  LN---SQARAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLA 810

Query: 757  ISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAF 936
            ISVIHGAGGSGKS+ALQ  L+ NPD  + +VLPTNELRLDWLKKLP  P +Q +TFE+A 
Sbjct: 811  ISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKAL 870

Query: 937  VCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPA 1116
            +    P VIFDDYGKLP GYIEAF+   +S EL++LTGD +QS HHE+NE A+ S + P 
Sbjct: 871  LAPTKPTVIFDDYGKLPAGYIEAFSFYMSSAELLVLTGDSKQSVHHESNENAMSSLIEPF 930

Query: 1117 TTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAA 1296
            T    + SRYYINATHRN + LANKLGVYS  +    +T G  P PGLHLLVPSL KK A
Sbjct: 931  TLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKQA 990

Query: 1297 FTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSA 1476
            F++ GHK STYAGCQG+TAP+VQILL  +T+MC++EV+YTALSRAV SIHFVN    + A
Sbjct: 991  FSEMGHKASTYAGCQGLTAPRVQILLSEETSMCSREVIYTALSRAVHSIHFVNCGPNNQA 1050

Query: 1477 FWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLS 1656
            FW KLE+TPYLK FLS +RED                       V+      +D  + + 
Sbjct: 1051 FWAKLESTPYLKAFLSTLREDAAPVVKPKEEAPAPVDPPKTHIPVDSAMPIYEDLLDQMP 1110

Query: 1657 DKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFR 1836
            +K EREIF+E HGH+NCVQ +D   Q+FSHQQAKDE LLW TI+ARL IS P+AN +EF 
Sbjct: 1111 EKHEREIFSEKHGHSNCVQTEDTFVQMFSHQQAKDETLLWATIEARLVISNPKANWQEFM 1170

Query: 1837 AKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPD 2016
             KK +GD+L+  Y +AM LP E   F   LW  C  E+Q TYL K I+ +K G+ RQSPD
Sbjct: 1171 EKKPIGDVLFGFYREAMGLPTEPIAFEPQLWESCIHEIQRTYLAKPINMLKNGQARQSPD 1230

Query: 2017 FHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPN 2196
            +  + I +FLKSQWVKKMEKLGA KIKPGQTIASF Q  VML+GTMARYMRR R+   P 
Sbjct: 1231 YDPNMISLFLKSQWVKKMEKLGALKIKPGQTIASFHQATVMLFGTMARYMRRMREIFQPK 1290

Query: 2197 NIMINCEKTPQDLSRWVL---NYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP 2367
            NI INCE TP+DL+ W +     W F+ PS ANDFTAFDQSQDGAMLQFE+LKAK+ ++P
Sbjct: 1291 NIAINCEMTPEDLTDWAVGPAGQWKFAGPSLANDFTAFDQSQDGAMLQFEVLKAKHHSIP 1350

Query: 2368 EWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAG 2547
            E V++ YL IK + KIFLGTL+IMRLTGEGPTFDANTECNIA+TH +F+IP+GTAQ+YAG
Sbjct: 1351 EDVLDAYLHIKTNSKIFLGTLAIMRLTGEGPTFDANTECNIAFTHAKFQIPKGTAQLYAG 1410

Query: 2548 DDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA 2727
            DD AI      + SF L++ ++ L++KPA   QE+G WAEFCGY ITPKG IKDP KLHA
Sbjct: 1411 DDSAIDGNPTVRESFRLVEQKLKLRSKPAIAMQEKGDWAEFCGYRITPKGFIKDPKKLHA 1470

Query: 2728 SLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKF 2907
            SL L K       K  + NV+ +Y LD  LAY   D+L +LLS  +  LH  TVR LVK 
Sbjct: 1471 SLVLEKK------KGNLRNVLRSYELDLALAYQHRDELHELLSEEELRLHYDTVRTLVKS 1524

Query: 2908 GGSPFL 2925
            GG   L
Sbjct: 1525 GGGEVL 1530