BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00001096
         (1098 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA95797.1| retrotransposon protein, putative, unclassified [...   125   2e-63
emb|CAN76196.1| hypothetical protein VITISV_041073 [Vitis vinifera]   124   3e-62
emb|CAN64613.1| hypothetical protein VITISV_030850 [Vitis vinifera]   114   5e-62
gb|AAL68641.1|AF458765_1 polyprotein [Oryza sativa Japonica Group]    131   7e-62
emb|CAD41085.2| OSJNBb0011N17.2 [Oryza sativa Japonica Group]         131   7e-62
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi...   128   2e-61
emb|CAN67449.1| hypothetical protein VITISV_031400 [Vitis vinifera]   122   2e-61
gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subc...   112   3e-61
gb|AAP21414.1| putative polyprotein [Oryza sativa Japonica Group...   125   3e-61
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi...   128   4e-61
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]         128   4e-61
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal...   128   4e-61
gb|ABA93730.1| retrotransposon protein, putative, unclassified [...   127   5e-61
gb|AAO20078.1| putative polyprotein [Oryza sativa Japonica Group]     130   6e-61
emb|CAN76400.1| hypothetical protein VITISV_001550 [Vitis vinifera]   117   6e-61
gb|EXC35359.1| Retrovirus-related Pol polyprotein from transposo...   122   7e-61
dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana] gi...   122   1e-60
gb|AAG51247.1|AC055769_6 copia-type polyprotein, putative; 28768...   122   1e-60
emb|CAN75466.1| hypothetical protein VITISV_025054 [Vitis vinifera]   106   1e-60
emb|CAN73102.1| hypothetical protein VITISV_042891 [Vitis vinifera]   113   1e-60

>gb|ABA95797.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1588

 Score =  125 bits (314), Expect(3) = 2e-63
 Identities = 69/199 (34%), Positives = 112/199 (56%), Gaps = 3/199 (1%)
 Frame = -1

Query: 588  LLAFHVNDXXXXXXXXXXIEDFKKKLREEFEITDLSNVECYLGLQLHKSNNGYVLNQEAY 409
            +LA +V+D          I+  K++L E FE+ DL  +  +LG+++ +S+ G VL+Q  Y
Sbjct: 1268 ILAVYVDDIVITGDDVEEIKCLKQRLGEAFEVKDLGPLRYFLGIEVARSSKGIVLSQRKY 1327

Query: 408  ASKLIEEYNLTNSNGRKYPLDSGAKLGEDEAKNI--KDYQALIESVIYLTNTTLDIQYLV 235
               L+ E  +        P+D   +L       +  + YQ L+  +IYL +T  DI Y V
Sbjct: 1328 VLDLLTETGMLGCRTSATPIDRNHQLSAQSGDPVDRETYQRLVGRLIYLCHTRPDISYAV 1387

Query: 234  SLLARAMHKPCKSHTKAAMGILQYIKGTISLGLKFIKNDNLTIEAYCDANFDKD-EEGKS 58
            S+++R MH P  +H +    IL+Y+KGT   GL F KN +L +E YCDA++    ++ +S
Sbjct: 1388 SVVSRYMHDPRTTHLEVVHRILRYLKGTPGKGLWFRKNQHLDVEGYCDADWASSVDDRRS 1447

Query: 57   TIGYLVKIGGDLISWASQK 1
            T GY V +GG+++ W S+K
Sbjct: 1448 TSGYCVFVGGNVVCWRSKK 1466



 Score = 99.8 bits (247), Expect(3) = 2e-63
 Identities = 49/105 (46%), Positives = 69/105 (65%), Gaps = 2/105 (1%)
 Frame = -2

Query: 920  YKDTFAPIAKM*TI*SIISLATKKGWKLHHLDVKSAFLNGDITEEIYMKQPKCYEDQNNL 741
            Y +TFAP+AKM T+  +IS A   GW LH LDVK+AFL+GD+ EE+YM+ P  + +   +
Sbjct: 1156 YDETFAPVAKMSTVRILISCAVNFGWPLHQLDVKNAFLHGDLQEEVYMEIPPGFGNSQTV 1215

Query: 740  S--CRILKSLYGLKQAPRAWYKKLEEFLSTQGFKKSISDPNYLFY 612
               CR+ KSLYGLKQ+PRAW+ +    L   G+ +   D + +FY
Sbjct: 1216 GKVCRLKKSLYGLKQSPRAWFDRFRRALCNMGYSQCNGD-HTVFY 1259



 Score = 66.6 bits (161), Expect(3) = 2e-63
 Identities = 27/60 (45%), Positives = 42/60 (70%)
 Frame = -3

Query: 1096 MDEEMANMKNKNVWRLEELPKGKK*VGCRWLYTIKLKPDGSLDKYKA*LVIQGFNQKEGI 917
            M EE+  ++    W L +LP GK+ VGC+W++T+K  P+G +D+YKA LV +G++Q  GI
Sbjct: 1095 MKEELRALEKNKTWELVKLPMGKRAVGCKWVFTVKQTPEGKVDRYKARLVAKGYSQTYGI 1154


>emb|CAN76196.1| hypothetical protein VITISV_041073 [Vitis vinifera]
          Length = 1505

 Score =  124 bits (310), Expect(3) = 3e-62
 Identities = 71/210 (33%), Positives = 118/210 (56%), Gaps = 4/210 (1%)
 Frame = -1

Query: 618  ILHRINTREVLLAFHVNDXXXXXXXXXXIEDFKKKLREEFEITDLSNVECYLGLQLHKSN 439
            I H  + +  +L  +V+D          ++  KK L  EFEI DL ++  +LG+++ +S 
Sbjct: 1174 IKHSNDGKIAILIVYVDDIILTGDHVTEMDRLKKSLALEFEIKDLGSLRYFLGMEVARSK 1233

Query: 438  NGYVLNQEAYASKLIEEYNLTNSNGRKYPLDSGAKLGEDEAKNIKD---YQALIESVIYL 268
             G V++Q  Y   L++E  ++       P+D   KLG+    N+ +   YQ L+  +IYL
Sbjct: 1234 RGIVVSQRKYILDLLKETGMSGCRPADTPIDPNQKLGDTNDGNLVNTTRYQKLVGKLIYL 1293

Query: 267  TNTTLDIQYLVSLLARAMHKPCKSHTKAAMGILQYIKGTISLGLKFIKNDNLTIEAYCDA 88
            ++T  DI + VS++++ MH P + H +A   IL+Y+K T   GL F K++  TIEAY DA
Sbjct: 1294 SHTRPDIAFAVSIVSQFMHSPYEVHLEAVYRILRYLKSTPGKGLFFKKSEQKTIEAYTDA 1353

Query: 87   NF-DKDEEGKSTIGYLVKIGGDLISWASQK 1
            ++     + +ST GY   I G+L++W S+K
Sbjct: 1354 DWAGSVTDRRSTSGYCTYIWGNLVTWRSKK 1383



 Score = 99.4 bits (246), Expect(3) = 3e-62
 Identities = 44/98 (44%), Positives = 70/98 (71%), Gaps = 1/98 (1%)
 Frame = -2

Query: 920  YKDTFAPIAKM*TI*SIISLATKKGWKLHHLDVKSAFLNGDITEEIYMKQPKCYEDQ-NN 744
            Y +TFAP+AK+ T+  ++S+A    W L  LDVK+AFLNG++ EE+YM  P  +++   +
Sbjct: 1072 YLETFAPVAKLNTVRVLLSIAANLDWPLQQLDVKNAFLNGNLEEEVYMDPPPGFDEHFGS 1131

Query: 743  LSCRILKSLYGLKQAPRAWYKKLEEFLSTQGFKKSISD 630
              C++ KSLYGLKQ+PRAW+++  +F+  QG+ ++ SD
Sbjct: 1132 KVCKLKKSLYGLKQSPRAWFERFTQFVKNQGYVQAQSD 1169



 Score = 64.7 bits (156), Expect(3) = 3e-62
 Identities = 28/58 (48%), Positives = 40/58 (68%)
 Frame = -3

Query: 1090 EEMANMKNKNVWRLEELPKGKK*VGCRWLYTIKLKPDGSLDKYKA*LVIQGFNQKEGI 917
            EEM  ++  + W +  LPKGK  VGC+W++T+K   +GSL++YKA LV +GF Q  GI
Sbjct: 1013 EEMRALEKNHTWEVMGLPKGKTTVGCKWVFTVKYNSNGSLERYKARLVAKGFTQTYGI 1070


>emb|CAN64613.1| hypothetical protein VITISV_030850 [Vitis vinifera]
          Length = 598

 Score =  114 bits (286), Expect(3) = 5e-62
 Identities = 72/221 (32%), Positives = 118/221 (53%), Gaps = 4/221 (1%)
 Frame = -1

Query: 651 FQKIHF*SKLPILHRINTREVLLAFHVNDXXXXXXXXXXIEDFKKKLREEFEITDLSNVE 472
           FQ+ +    L + HR+     L+ + V+D          I   + +L  EFE+ +L  ++
Sbjct: 292 FQQSNSDHTLFLKHRLGKITALIVY-VDDMIITGDDVEEISKLQDQLSTEFEMKNLGGLK 350

Query: 471 CYLGLQLHKSNNGYVLNQEAYASKLIEEYNLTNSNGRKYPLDSGAKLGE--DEAKNIKD- 301
            +LG+++ +S  G  L+Q  Y   L+ E  L        P+    KLGE  D+    K  
Sbjct: 351 YFLGIEVARSRQGIFLSQRKYILDLLAEVGLLECKPSDIPIVQNHKLGEYVDQVPADKQR 410

Query: 300 YQALIESVIYLTNTTLDIQYLVSLLARAMHKPCKSHTKAAMGILQYIKGTISLGLKFIKN 121
           YQ L+  +IYL++T  DI Y VS++++ MH+P + H  A M IL+Y+K +   GL F KN
Sbjct: 411 YQRLVGKLIYLSHTRPDIAYAVSVVSQFMHRPSEDHMDAVMRILRYLKSSPGKGLMFSKN 470

Query: 120 DNLTIEAYCDANFDKD-EEGKSTIGYLVKIGGDLISWASQK 1
            +L +  Y DA++  +  + KST GY   +G +L++W S+K
Sbjct: 471 GHLKVVGYTDADWAGNIIDRKSTAGYFTFVGSNLVTWRSKK 511



 Score =  100 bits (250), Expect(3) = 5e-62
 Identities = 47/99 (47%), Positives = 70/99 (70%), Gaps = 2/99 (2%)
 Frame = -2

Query: 920 YKDTFAPIAKM*TI*SIISLATKKGWKLHHLDVKSAFLNGDITEEIYMKQPKCY--EDQN 747
           Y++TF+P+AK+ T+  ++SLA    W LH LDVK+AFL+GD+ EEIYM  P  Y    + 
Sbjct: 200 YQETFSPVAKLKTVRVLLSLAANLDWPLHQLDVKNAFLHGDLEEEIYMDIPPGYTTTSEA 259

Query: 746 NLSCRILKSLYGLKQAPRAWYKKLEEFLSTQGFKKSISD 630
            ++CR+ ++LYGLKQ+PRAW+ +L   +   GF++S SD
Sbjct: 260 KIACRLQRALYGLKQSPRAWFGRLSSAMRKYGFQQSNSD 298



 Score = 71.6 bits (174), Expect(3) = 5e-62
 Identities = 30/58 (51%), Positives = 43/58 (74%)
 Frame = -3

Query: 1090 EEMANMKNKNVWRLEELPKGKK*VGCRWLYTIKLKPDGSLDKYKA*LVIQGFNQKEGI 917
            EE+  ++  N W L  LP+G+K VGC+W+++IK K DGS+D+YKA LV +G+ QK GI
Sbjct: 141  EELEALQKNNTWVLSVLPEGRKTVGCKWIFSIKYKADGSIDRYKARLVAKGYTQKHGI 198


>gb|AAL68641.1|AF458765_1 polyprotein [Oryza sativa Japonica Group]
          Length = 1472

 Score =  131 bits (330), Expect(3) = 7e-62
 Identities = 74/207 (35%), Positives = 114/207 (55%), Gaps = 3/207 (1%)
 Frame = -1

Query: 612  HRINTREVLLAFHVNDXXXXXXXXXXIEDFKKKLREEFEITDLSNVECYLGLQLHKSNNG 433
            H       +LA +V+D          I   K+ L +EFE+ DL  ++ +LG+++ +S  G
Sbjct: 1144 HHSGDHITILAVYVDDMIITGNDCSEITRLKQNLSKEFEVKDLGQLKYFLGIEIARSPRG 1203

Query: 432  YVLNQEAYASKLIEEYNLTNSNGRKYPLDSGAKLGEDEAK--NIKDYQALIESVIYLTNT 259
             VL+Q  YA  L+ +  +        P+D   KL  +     N + YQ L+  +IYL +T
Sbjct: 1204 IVLSQRKYALDLLSDTGMLGCRPASTPVDQNHKLCAESGNPVNKERYQRLVGRLIYLCHT 1263

Query: 258  TLDIQYLVSLLARAMHKPCKSHTKAAMGILQYIKGTISLGLKFIKNDNLTIEAYCDANFD 79
              DI Y VS+++R MH P   H  A   IL+Y+KG+   GL F KN +L +E YCDA++ 
Sbjct: 1264 RPDITYAVSMVSRYMHDPRSGHMDAVYRILRYLKGSPGKGLWFKKNGHLEVEGYCDAHWA 1323

Query: 78   K-DEEGKSTIGYLVKIGGDLISWASQK 1
               ++ +ST GY V +GG+L+SW S+K
Sbjct: 1324 SCPDDRRSTSGYCVFVGGNLVSWRSKK 1350



 Score = 94.4 bits (233), Expect(3) = 7e-62
 Identities = 46/105 (43%), Positives = 65/105 (61%), Gaps = 2/105 (1%)
 Frame = -2

Query: 920  YKDTFAPIAKM*TI*SIISLATKKGWKLHHLDVKSAFLNGDITEEIYMKQPKCYE--DQN 747
            Y +TFAP+AKM T+ +IIS A    W LH LDVK+AFL+GD+ EE+YM+ P  +      
Sbjct: 1040 YDETFAPVAKMSTVRTIISCAVNFDWPLHQLDVKNAFLHGDLQEEVYMEIPPGFATLQTK 1099

Query: 746  NLSCRILKSLYGLKQAPRAWYKKLEEFLSTQGFKKSISDPNYLFY 612
                R+ KSLYGLKQ+PRAW+ +    +   G+K+   D    ++
Sbjct: 1100 GKVLRLKKSLYGLKQSPRAWFDRFRRAMCAMGYKQCNGDHTVFYH 1144



 Score = 60.8 bits (146), Expect(3) = 7e-62
 Identities = 29/60 (48%), Positives = 39/60 (65%)
 Frame = -3

Query: 1096 MDEEMANMKNKNVWRLEELPKGKK*VGCRWLYTIKLKPDGSLDKYKA*LVIQGFNQKEGI 917
            +DE  A  KNK  W L   P GKK V C+W+Y +K  PDG +++YKA LV +G++Q  GI
Sbjct: 980  LDELEALEKNKT-WDLVSYPNGKKVVNCKWVYAVKQNPDGKVERYKARLVAKGYSQTYGI 1038


>emb|CAD41085.2| OSJNBb0011N17.2 [Oryza sativa Japonica Group]
          Length = 1262

 Score =  131 bits (330), Expect(3) = 7e-62
 Identities = 74/207 (35%), Positives = 114/207 (55%), Gaps = 3/207 (1%)
 Frame = -1

Query: 612  HRINTREVLLAFHVNDXXXXXXXXXXIEDFKKKLREEFEITDLSNVECYLGLQLHKSNNG 433
            H       +LA +V+D          I   K+ L +EFE+ DL  ++ +LG+++ +S  G
Sbjct: 934  HHSGDHITILAVYVDDMIITGNDCSEITRLKQNLSKEFEVKDLGQLKYFLGIEIARSPRG 993

Query: 432  YVLNQEAYASKLIEEYNLTNSNGRKYPLDSGAKLGEDEAK--NIKDYQALIESVIYLTNT 259
             VL+Q  YA  L+ +  +        P+D   KL  +     N + YQ L+  +IYL +T
Sbjct: 994  IVLSQRKYALDLLSDTGMLGCRPASTPVDQNHKLCAESGNPVNKERYQRLVGRLIYLCHT 1053

Query: 258  TLDIQYLVSLLARAMHKPCKSHTKAAMGILQYIKGTISLGLKFIKNDNLTIEAYCDANFD 79
              DI Y VS+++R MH P   H  A   IL+Y+KG+   GL F KN +L +E YCDA++ 
Sbjct: 1054 RPDITYAVSMVSRYMHDPRSGHMDAVYRILRYLKGSPGKGLWFKKNGHLEVEGYCDADWA 1113

Query: 78   K-DEEGKSTIGYLVKIGGDLISWASQK 1
               ++ +ST GY V +GG+L+SW S+K
Sbjct: 1114 SCPDDRRSTSGYCVFVGGNLVSWRSKK 1140



 Score = 94.4 bits (233), Expect(3) = 7e-62
 Identities = 46/105 (43%), Positives = 65/105 (61%), Gaps = 2/105 (1%)
 Frame = -2

Query: 920  YKDTFAPIAKM*TI*SIISLATKKGWKLHHLDVKSAFLNGDITEEIYMKQPKCYE--DQN 747
            Y +TFAP+AKM T+ +IIS A    W LH LDVK+AFL+GD+ EE+YM+ P  +      
Sbjct: 830  YDETFAPVAKMSTVRTIISCAVNFDWPLHQLDVKNAFLHGDLQEEVYMEIPPGFATLQTK 889

Query: 746  NLSCRILKSLYGLKQAPRAWYKKLEEFLSTQGFKKSISDPNYLFY 612
                R+ KSLYGLKQ+PRAW+ +    +   G+K+   D    ++
Sbjct: 890  GKVLRLKKSLYGLKQSPRAWFDRFRRAMCAMGYKQCNGDHTVFYH 934



 Score = 60.8 bits (146), Expect(3) = 7e-62
 Identities = 29/60 (48%), Positives = 39/60 (65%)
 Frame = -3

Query: 1096 MDEEMANMKNKNVWRLEELPKGKK*VGCRWLYTIKLKPDGSLDKYKA*LVIQGFNQKEGI 917
            +DE  A  KNK  W L   P GKK V C+W+Y +K  PDG +++YKA LV +G++Q  GI
Sbjct: 770  LDELEALEKNKT-WDLVSYPNGKKVVNCKWVYAVKQNPDGKVERYKARLVAKGYSQTYGI 828


>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
            gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
            polyprotein, putative [Arabidopsis thaliana]
          Length = 1320

 Score =  128 bits (321), Expect(3) = 2e-61
 Identities = 69/208 (33%), Positives = 123/208 (59%), Gaps = 5/208 (2%)
 Frame = -1

Query: 609  RINTREVLLA-FHVNDXXXXXXXXXXIEDFKKKLREEFEITDLSNVECYLGLQLHKSNNG 433
            +I   ++L+A  +V+D           E+FKK++ +EFE+TD+  +  YLG+++ + +NG
Sbjct: 987  KIQKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNG 1046

Query: 432  YVLNQEAYASKLIEEYNLTNSNGRKYPLDSGAKLG---EDEAKNIKDYQALIESVIYLTN 262
              + QE YA ++++++ + +SN    P++ G KL    E E  +   +++L+ S+ YLT 
Sbjct: 1047 IFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTC 1106

Query: 261  TTLDIQYLVSLLARAMHKPCKSHTKAAMGILQYIKGTISLGLKFIKNDNLTIEAYCDANF 82
            T  DI Y V +++R M  P  +H KAA  IL+YIKGT++ GL +    +  +  Y D+++
Sbjct: 1107 TRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDW 1166

Query: 81   DKD-EEGKSTIGYLVKIGGDLISWASQK 1
              D ++ KST G++  IG    +W S+K
Sbjct: 1167 GGDVDDRKSTSGFVFYIGDTAFTWMSKK 1194



 Score = 98.6 bits (244), Expect(3) = 2e-61
 Identities = 45/95 (47%), Positives = 69/95 (72%), Gaps = 2/95 (2%)
 Frame = -2

Query: 920  YKDTFAPIAKM*TI*SIISLATKKGWKLHHLDVKSAFLNGDITEEIYMKQPKCY--EDQN 747
            Y + FAP+A++ T+  IISLA +  WK+H +DVKSAFLNGD+ EE+Y++QP+ Y  + + 
Sbjct: 883  YDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEE 942

Query: 746  NLSCRILKSLYGLKQAPRAWYKKLEEFLSTQGFKK 642
            +   R+ K+LYGLKQAPRAW  +++++   + F K
Sbjct: 943  DKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIK 977



 Score = 58.9 bits (141), Expect(3) = 2e-61
 Identities = 24/60 (40%), Positives = 39/60 (65%)
 Frame = -3

Query: 1096 MDEEMANMKNKNVWRLEELPKGKK*VGCRWLYTIKLKPDGSLDKYKA*LVIQGFNQKEGI 917
            MDEE+ +++  + W L  LP G K +G +W+Y  K    G +++YKA LV +G++Q+ GI
Sbjct: 822  MDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGI 881


>emb|CAN67449.1| hypothetical protein VITISV_031400 [Vitis vinifera]
          Length = 1618

 Score =  122 bits (306), Expect(3) = 2e-61
 Identities = 70/201 (34%), Positives = 115/201 (57%), Gaps = 4/201 (1%)
 Frame = -1

Query: 591  VLLAFHVNDXXXXXXXXXXIEDFKKKLREEFEITDLSNVECYLGLQLHKSNNGYVLNQEA 412
            V+L  +V+D          ++  KK L EEFE+ DL N++ +LG+++ +S  G V++Q  
Sbjct: 1296 VILIVYVDDIILSGNDMEELQKLKKYLSEEFEVKDLGNLKYFLGMEVARSRKGIVVSQRK 1355

Query: 411  YASKLIEEYNLTNSNGRKYPLDSGAKLGEDEAKNIKD---YQALIESVIYLTNTTLDIQY 241
            Y   L++E  +        P+DS  KLG ++     D   YQ L+  +IYL++T  DI +
Sbjct: 1356 YILDLLKETGMLGCKPIDTPMDSQKKLGIEKESTSVDRGRYQRLVGRLIYLSHTRPDIGF 1415

Query: 240  LVSLLARAMHKPCKSHTKAAMGILQYIKGTISLGLKFIKNDNLTIEAYCDANFDKD-EEG 64
             VS +++ MH P + H +A   IL+Y+K T   GL F K +N  IE Y DA++ ++  + 
Sbjct: 1416 XVSAVSQFMHXPTEEHMEAVYRILRYLKMTPGKGLFFRKTENRDIEVYSDADWARNIIDR 1475

Query: 63   KSTIGYLVKIGGDLISWASQK 1
            +ST GY   + G+L++W S+K
Sbjct: 1476 RSTSGYCSFVWGNLVTWRSKK 1496



 Score =  100 bits (249), Expect(3) = 2e-61
 Identities = 47/99 (47%), Positives = 70/99 (70%), Gaps = 2/99 (2%)
 Frame = -2

Query: 920  YKDTFAPIAKM*TI*SIISLATKKGWKLHHLDVKSAFLNGDITEEIYMKQPKCYEDQ--N 747
            Y+ TFAP+AK+ TI  ++SLA  + W L  LD+K+AFLNGD+ EE+YM+ P  +E+   N
Sbjct: 1184 YQKTFAPVAKLNTIRILLSLAVNQDWCLQQLDIKNAFLNGDLEEEVYMEIPPGFEESMAN 1243

Query: 746  NLSCRILKSLYGLKQAPRAWYKKLEEFLSTQGFKKSISD 630
            N  C++ KSLYGLKQ+PRAW+ +  + +   G+K+  +D
Sbjct: 1244 NQVCKLQKSLYGLKQSPRAWFDRFTKAVLKLGYKQGQAD 1282



 Score = 62.4 bits (150), Expect(3) = 2e-61
 Identities = 25/60 (41%), Positives = 41/60 (68%)
 Frame = -3

Query: 1096 MDEEMANMKNKNVWRLEELPKGKK*VGCRWLYTIKLKPDGSLDKYKA*LVIQGFNQKEGI 917
            + +E+  ++    W + +LP GK+ VGC+W++TIK   DGS++++KA LV +GF Q  GI
Sbjct: 1123 VQDEIDALEKNGTWTITDLPVGKRPVGCKWIFTIKYNADGSVERFKARLVARGFTQSYGI 1182


>gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1202

 Score =  112 bits (279), Expect(3) = 3e-61
 Identities = 51/103 (49%), Positives = 73/103 (70%)
 Frame = -2

Query: 920  YKDTFAPIAKM*TI*SIISLATKKGWKLHHLDVKSAFLNGDITEEIYMKQPKCYEDQNNL 741
            Y+DTF+P+ K  TI +I+S+A  +GW L  LDV++AFL+G + E+++M+QP  YE ++  
Sbjct: 863  YEDTFSPVVKAATIRTILSIAISRGWTLRQLDVQNAFLHGVLEEDVFMRQPPGYEQKDGY 922

Query: 740  SCRILKSLYGLKQAPRAWYKKLEEFLSTQGFKKSISDPNYLFY 612
             C++ K+LYGLKQAPRAWY +L   L   GFK S SD +  FY
Sbjct: 923  VCKLDKALYGLKQAPRAWYSRLSTKLHELGFKSSKSDTSLFFY 965



 Score =  111 bits (278), Expect(3) = 3e-61
 Identities = 62/203 (30%), Positives = 111/203 (54%), Gaps = 6/203 (2%)
 Frame = -1

Query: 591  VLLAFHVNDXXXXXXXXXXIEDFKKKLREEFEITDLSNVECYLGLQLHKSNNGYVLNQEA 412
            + +  +V+D               K L +EF + DL  +  +LG+++ + NNG VL QE 
Sbjct: 972  IFMLVYVDDIIVASSSIDATNALLKNLNQEFALKDLGRLHYFLGIEVKELNNGIVLTQEK 1031

Query: 411  YASKLIEEYNLTNSNGRKYPLDSGAKLGEDEAKNIKD-----YQALIESVIYLTNTTLDI 247
            YA  +++  N+++      PL    KL   E   +       Y++L+ ++ YLT T  D+
Sbjct: 1032 YAMDVLKRVNMSDCKAVNTPLSISEKLSAHEGNPLGPEDSTRYRSLVGALQYLTLTRPDL 1091

Query: 246  QYLVSLLARAMHKPCKSHTKAAMGILQYIKGTISLGLKFIKNDNLTIEAYCDANFDKD-E 70
             + V+ + + +H P   H  AA  IL+Y+K T+ LGLK  K+++L + A+ DA++    +
Sbjct: 1092 SFSVNKVCQYLHAPTTKHWAAAKRILRYLKHTVKLGLKISKSNSLLVSAFSDADWAGCLD 1151

Query: 69   EGKSTIGYLVKIGGDLISWASQK 1
            + +ST G+ V IG +L+SW+++K
Sbjct: 1152 DRRSTGGFAVFIGPNLVSWSARK 1174



 Score = 61.2 bits (147), Expect(3) = 3e-61
 Identities = 32/61 (52%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
 Frame = -3

Query: 1096 MDEE-MANMKNKNVWRLEELPKGKK*VGCRWLYTIKLKPDGSLDKYKA*LVIQGFNQKEG 920
            MD E  A MKNK  W L    KG+  + C+W+Y +K K DGSLD+YKA LV +GF Q+ G
Sbjct: 802  MDSEYQALMKNKT-WHLVPSKKGQNIIDCKWVYKVKQKADGSLDRYKARLVAKGFKQRYG 860

Query: 919  I 917
            I
Sbjct: 861  I 861


>gb|AAP21414.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108711651|gb|ABF99446.1| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 1393

 Score =  125 bits (313), Expect(3) = 3e-61
 Identities = 72/207 (34%), Positives = 113/207 (54%), Gaps = 3/207 (1%)
 Frame = -1

Query: 612  HRINTREVLLAFHVNDXXXXXXXXXXIEDFKKKLREEFEITDLSNVECYLGLQLHKSNNG 433
            HR  T   +LA +V+D          I   K++L + FE+ DL  +  +LG+++ +S+ G
Sbjct: 1066 HR-GTHITILAVYVDDIVITGDDVEEIRCLKERLGKAFEVKDLGPLRYFLGIEIARSSKG 1124

Query: 432  YVLNQEAYASKLIEEYNLTNSNGRKYPLDSGAKLGEDEAKNI--KDYQALIESVIYLTNT 259
             VL+Q  Y   L+ +  +        P+D   +L       +  + YQ L+  +IYL +T
Sbjct: 1125 IVLSQRKYVLDLLTDTGMLGCRASTTPIDRNHQLCAQSGDPVDKEAYQRLVGRLIYLCHT 1184

Query: 258  TLDIQYLVSLLARAMHKPCKSHTKAAMGILQYIKGTISLGLKFIKNDNLTIEAYCDANFD 79
              DI Y VS+++R MH P   H      IL+Y+KGT   GL F KN +L +E YCDA++ 
Sbjct: 1185 RPDISYAVSVVSRYMHDPRTGHLDVVHKILRYLKGTPGKGLWFRKNGHLNVEGYCDADWA 1244

Query: 78   KD-EEGKSTIGYLVKIGGDLISWASQK 1
               ++ +ST GY V +GG+L+SW S+K
Sbjct: 1245 SSMDDRRSTSGYCVFVGGNLVSWRSKK 1271



 Score = 97.4 bits (241), Expect(3) = 3e-61
 Identities = 46/105 (43%), Positives = 70/105 (66%), Gaps = 2/105 (1%)
 Frame = -2

Query: 920  YKDTFAPIAKM*TI*SIISLATKKGWKLHHLDVKSAFLNGDITEEIYMKQPKCYEDQNNL 741
            Y +TFAP+AKM T+ +++S A   GW LH LDVK+AFL+GD+ EE+YM+ P  + +   +
Sbjct: 961  YDETFAPVAKMGTVRALVSCAVNFGWPLHQLDVKNAFLHGDLHEEVYMEIPPGFGNSQTV 1020

Query: 740  S--CRILKSLYGLKQAPRAWYKKLEEFLSTQGFKKSISDPNYLFY 612
               C++ KSLYGLKQ+PRAW+ +    +   G+ +   D + +FY
Sbjct: 1021 GKVCKLKKSLYGLKQSPRAWFDRFRHAVCDMGYSQCNGD-HTVFY 1064



 Score = 62.0 bits (149), Expect(3) = 3e-61
 Identities = 26/60 (43%), Positives = 40/60 (66%)
 Frame = -3

Query: 1096 MDEEMANMKNKNVWRLEELPKGKK*VGCRWLYTIKLKPDGSLDKYKA*LVIQGFNQKEGI 917
            M EE+  +     W L +LP  K+ VGC+W++T+K  P+G +D+YKA LV +G++Q  GI
Sbjct: 900  MKEELNALVKNKTWELVKLPPEKRAVGCKWVFTVKQTPEGKVDRYKARLVAKGYSQTYGI 959


>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1352

 Score =  128 bits (321), Expect(3) = 4e-61
 Identities = 69/208 (33%), Positives = 123/208 (59%), Gaps = 5/208 (2%)
 Frame = -1

Query: 609  RINTREVLLA-FHVNDXXXXXXXXXXIEDFKKKLREEFEITDLSNVECYLGLQLHKSNNG 433
            +I   ++L+A  +V+D           E+FKK++ +EFE+TD+  +  YLG+++ + +NG
Sbjct: 1019 KIQKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNG 1078

Query: 432  YVLNQEAYASKLIEEYNLTNSNGRKYPLDSGAKLG---EDEAKNIKDYQALIESVIYLTN 262
              + QE YA ++++++ + +SN    P++ G KL    E E  +   +++L+ S+ YLT 
Sbjct: 1079 IFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTC 1138

Query: 261  TTLDIQYLVSLLARAMHKPCKSHTKAAMGILQYIKGTISLGLKFIKNDNLTIEAYCDANF 82
            T  DI Y V +++R M  P  +H KAA  IL+YIKGT++ GL +    +  +  Y D+++
Sbjct: 1139 TRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDW 1198

Query: 81   DKD-EEGKSTIGYLVKIGGDLISWASQK 1
              D ++ KST G++  IG    +W S+K
Sbjct: 1199 GGDVDDRKSTSGFVFYIGDTAFTWMSKK 1226



 Score = 98.6 bits (244), Expect(3) = 4e-61
 Identities = 45/95 (47%), Positives = 69/95 (72%), Gaps = 2/95 (2%)
 Frame = -2

Query: 920  YKDTFAPIAKM*TI*SIISLATKKGWKLHHLDVKSAFLNGDITEEIYMKQPKCY--EDQN 747
            Y + FAP+A++ T+  IISLA +  WK+H +DVKSAFLNGD+ EE+Y++QP+ Y  + + 
Sbjct: 915  YDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEE 974

Query: 746  NLSCRILKSLYGLKQAPRAWYKKLEEFLSTQGFKK 642
            +   R+ K+LYGLKQAPRAW  +++++   + F K
Sbjct: 975  DKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIK 1009



 Score = 57.4 bits (137), Expect(3) = 4e-61
 Identities = 24/60 (40%), Positives = 38/60 (63%)
 Frame = -3

Query: 1096 MDEEMANMKNKNVWRLEELPKGKK*VGCRWLYTIKLKPDGSLDKYKA*LVIQGFNQKEGI 917
            MDEE+ +++  + W L  LP G K +G +W+Y  K    G +++YKA LV +G+ Q+ GI
Sbjct: 854  MDEEIKSIQKNDTWELTSLPNGHKTIGVKWVYKAKKNSKGEVERYKARLVAKGYIQRAGI 913


>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
          Length = 1352

 Score =  128 bits (321), Expect(3) = 4e-61
 Identities = 69/208 (33%), Positives = 123/208 (59%), Gaps = 5/208 (2%)
 Frame = -1

Query: 609  RINTREVLLA-FHVNDXXXXXXXXXXIEDFKKKLREEFEITDLSNVECYLGLQLHKSNNG 433
            +I   ++L+A  +V+D           E+FKK++ +EFE+TD+  +  YLG+++ + +NG
Sbjct: 1019 KIQKEDILIACLYVDDLIFTGNNPSIFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNG 1078

Query: 432  YVLNQEAYASKLIEEYNLTNSNGRKYPLDSGAKLG---EDEAKNIKDYQALIESVIYLTN 262
              + QE YA ++++++ + +SN    P++ G KL    E E  +   +++L+ S+ YLT 
Sbjct: 1079 IFITQEGYAKEVLKKFKIDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTC 1138

Query: 261  TTLDIQYLVSLLARAMHKPCKSHTKAAMGILQYIKGTISLGLKFIKNDNLTIEAYCDANF 82
            T  DI Y V +++R M  P  +H KAA  IL+YIKGT++ GL +    +  +  Y D+++
Sbjct: 1139 TRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDW 1198

Query: 81   DKD-EEGKSTIGYLVKIGGDLISWASQK 1
              D ++ KST G++  IG    +W S+K
Sbjct: 1199 GGDVDDRKSTSGFVFYIGDTAFTWMSKK 1226



 Score = 97.4 bits (241), Expect(3) = 4e-61
 Identities = 45/95 (47%), Positives = 68/95 (71%), Gaps = 2/95 (2%)
 Frame = -2

Query: 920  YKDTFAPIAKM*TI*SIISLATKKGWKLHHLDVKSAFLNGDITEEIYMKQPKCY--EDQN 747
            Y + FAP+A++ T+  IISLA +  WK+H +DVKSAFLNGD+ EE+Y++QP+ Y  + + 
Sbjct: 915  YDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEE 974

Query: 746  NLSCRILKSLYGLKQAPRAWYKKLEEFLSTQGFKK 642
            +   R+ K LYGLKQAPRAW  +++++   + F K
Sbjct: 975  DKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIK 1009



 Score = 58.5 bits (140), Expect(3) = 4e-61
 Identities = 24/60 (40%), Positives = 39/60 (65%)
 Frame = -3

Query: 1096 MDEEMANMKNKNVWRLEELPKGKK*VGCRWLYTIKLKPDGSLDKYKA*LVIQGFNQKEGI 917
            MDEE+ +++  + W L  LP G K +G +W+Y  K    G +++YKA LV +G++Q+ GI
Sbjct: 854  MDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRVGI 913


>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
          Length = 1352

 Score =  128 bits (321), Expect(3) = 4e-61
 Identities = 69/208 (33%), Positives = 123/208 (59%), Gaps = 5/208 (2%)
 Frame = -1

Query: 609  RINTREVLLA-FHVNDXXXXXXXXXXIEDFKKKLREEFEITDLSNVECYLGLQLHKSNNG 433
            +I   ++L+A  +V+D           E+FKK++ +EFE+TD+  +  YLG+++ + +NG
Sbjct: 1019 KIQKEDILIACLYVDDLIFTGNNPSIFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNG 1078

Query: 432  YVLNQEAYASKLIEEYNLTNSNGRKYPLDSGAKLG---EDEAKNIKDYQALIESVIYLTN 262
              + QE YA ++++++ + +SN    P++ G KL    E E  +   +++L+ S+ YLT 
Sbjct: 1079 IFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTC 1138

Query: 261  TTLDIQYLVSLLARAMHKPCKSHTKAAMGILQYIKGTISLGLKFIKNDNLTIEAYCDANF 82
            T  DI Y V +++R M  P  +H KAA  IL+YIKGT++ GL +    +  +  Y D+++
Sbjct: 1139 TRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDW 1198

Query: 81   DKD-EEGKSTIGYLVKIGGDLISWASQK 1
              D ++ KST G++  IG    +W S+K
Sbjct: 1199 GGDVDDRKSTSGFVFYIGDTAFTWMSKK 1226



 Score = 97.4 bits (241), Expect(3) = 4e-61
 Identities = 45/95 (47%), Positives = 68/95 (71%), Gaps = 2/95 (2%)
 Frame = -2

Query: 920  YKDTFAPIAKM*TI*SIISLATKKGWKLHHLDVKSAFLNGDITEEIYMKQPKCY--EDQN 747
            Y + FAP+A++ T+  IISLA +  WK+H +DVKSAFLNGD+ EE+Y++QP+ Y  + + 
Sbjct: 915  YDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEE 974

Query: 746  NLSCRILKSLYGLKQAPRAWYKKLEEFLSTQGFKK 642
            +   R+ K LYGLKQAPRAW  +++++   + F K
Sbjct: 975  DKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIK 1009



 Score = 58.5 bits (140), Expect(3) = 4e-61
 Identities = 24/60 (40%), Positives = 39/60 (65%)
 Frame = -3

Query: 1096 MDEEMANMKNKNVWRLEELPKGKK*VGCRWLYTIKLKPDGSLDKYKA*LVIQGFNQKEGI 917
            MDEE+ +++  + W L  LP G K +G +W+Y  K    G +++YKA LV +G++Q+ GI
Sbjct: 854  MDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRVGI 913


>gb|ABA93730.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 656

 Score =  127 bits (318), Expect(3) = 5e-61
 Identities = 73/207 (35%), Positives = 115/207 (55%), Gaps = 3/207 (1%)
 Frame = -1

Query: 612 HRINTREVLLAFHVNDXXXXXXXXXXIEDFKKKLREEFEITDLSNVECYLGLQLHKSNNG 433
           HR  T   +LA +V+D          I   K++L + FE+ DL  +  +LG+++ +S+ G
Sbjct: 329 HR-GTNITILAVYVDDIVITGDDVEEIRCLKERLGKAFEVKDLGPLRYFLGIEIARSSKG 387

Query: 432 YVLNQEAYASKLIEEYNLTNSNGRKYPLDSGAKL--GEDEAKNIKDYQALIESVIYLTNT 259
            VL+Q  Y   L+ +  +        P+D   +L     +  N + YQ L+  +IYL +T
Sbjct: 388 IVLSQRKYVLDLLTDTGMLGCRASTTPIDRNHQLCAQSGDPVNKEAYQRLVGRLIYLCHT 447

Query: 258 TLDIQYLVSLLARAMHKPCKSHTKAAMGILQYIKGTISLGLKFIKNDNLTIEAYCDANFD 79
             DI Y+VS+++R MH P   H      IL+Y+KGT   GL F KN +L +E YCDA++ 
Sbjct: 448 RPDISYVVSVVSRYMHDPRTGHLDVVHKILRYLKGTPGKGLWFRKNGHLNVEGYCDADWA 507

Query: 78  KD-EEGKSTIGYLVKIGGDLISWASQK 1
              ++ +ST GY V +GG+L+SW S+K
Sbjct: 508 SSMDDRRSTSGYCVFVGGNLVSWRSKK 534



 Score = 95.1 bits (235), Expect(3) = 5e-61
 Identities = 45/105 (42%), Positives = 69/105 (65%), Gaps = 2/105 (1%)
 Frame = -2

Query: 920 YKDTFAPIAKM*TI*SIISLATKKGWKLHHLDVKSAFLNGDITEEIYMKQPKCYEDQNNL 741
           Y +TFAP+AKM  + +++S A   GW LH LDVK+AFL+GD+ EE+YM+ P  + +   +
Sbjct: 224 YDETFAPVAKMGIVRALVSCAVNFGWPLHQLDVKNAFLHGDLHEEVYMEIPPGFGNSQTV 283

Query: 740 S--CRILKSLYGLKQAPRAWYKKLEEFLSTQGFKKSISDPNYLFY 612
              C++ KSLYGLKQ+PRAW+ +    +   G+ +   D + +FY
Sbjct: 284 GKVCKLKKSLYGLKQSPRAWFDRFRHAVCDMGYSQCNGD-HTVFY 327



 Score = 62.0 bits (149), Expect(3) = 5e-61
 Identities = 26/60 (43%), Positives = 40/60 (66%)
 Frame = -3

Query: 1096 MDEEMANMKNKNVWRLEELPKGKK*VGCRWLYTIKLKPDGSLDKYKA*LVIQGFNQKEGI 917
            M EE+  +     W L +LP  K+ VGC+W++T+K  P+G +D+YKA LV +G++Q  GI
Sbjct: 163  MKEELNALVKNKTWELVKLPPEKRAVGCKWVFTVKQTPEGKVDRYKARLVAKGYSQTYGI 222


>gb|AAO20078.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1299

 Score =  130 bits (328), Expect(3) = 6e-61
 Identities = 75/207 (36%), Positives = 114/207 (55%), Gaps = 3/207 (1%)
 Frame = -1

Query: 612  HRINTREVLLAFHVNDXXXXXXXXXXIEDFKKKLREEFEITDLSNVECYLGLQLHKSNNG 433
            H       +LA +V+D          I   K+ L +EFE+ DL  +  +LG+++ +S  G
Sbjct: 971  HHSGDHITILAVYVDDMIITGNDCLEITRLKRNLSKEFEVKDLGQLRYFLGIEIARSPRG 1030

Query: 432  YVLNQEAYASKLIEEYNLTNSNGRKYPLDSGAKLGEDEAK--NIKDYQALIESVIYLTNT 259
             V++Q  Y   L+ E  +        P+D   KL  +     N + YQ L+  +IYL +T
Sbjct: 1031 IVISQRKYVLDLLSETGMLGCCPVSTPIDQNHKLCAESGDPVNRERYQRLVGRLIYLCHT 1090

Query: 258  TLDIQYLVSLLARAMHKPCKSHTKAAMGILQYIKGTISLGLKFIKNDNLTIEAYCDANFD 79
              DI Y VS+++R MH P  SH +A   IL+Y+KG+   GL F KN +L IE YCDA++ 
Sbjct: 1091 RPDITYAVSMVSRYMHDPRSSHMEAVYRILRYLKGSPGKGLWFKKNGHLKIEGYCDADWA 1150

Query: 78   KD-EEGKSTIGYLVKIGGDLISWASQK 1
               ++ +ST GY V +GG+L+SW S+K
Sbjct: 1151 SCLDDRRSTSGYCVYVGGNLVSWRSKK 1177



 Score = 88.2 bits (217), Expect(3) = 6e-61
 Identities = 43/105 (40%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
 Frame = -2

Query: 920  YKDTFAPIAKM*TI*SIISLATKKGWKLHHLDVKSAFLNGDITEEIYMKQPKCYEDQNNL 741
            Y +TFAP+AKM T+ ++IS A    W LH LDVK+AFL+ D+ EE+YM  P  +      
Sbjct: 867  YDETFAPVAKMSTVRTLISCAANFDWPLHQLDVKNAFLHRDLQEEVYMDVPPGFATSQTK 926

Query: 740  S--CRILKSLYGLKQAPRAWYKKLEEFLSTQGFKKSISDPNYLFY 612
                R+ KSLYGLKQ+PRAW+ +    +    +K+   D    ++
Sbjct: 927  GKVLRLKKSLYGLKQSPRAWFDRFRRAMCAMDYKQCNGDHTVFYH 971



 Score = 64.7 bits (156), Expect(3) = 6e-61
 Identities = 31/60 (51%), Positives = 41/60 (68%)
 Frame = -3

Query: 1096 MDEEMANMKNKNVWRLEELPKGKK*VGCRWLYTIKLKPDGSLDKYKA*LVIQGFNQKEGI 917
            +DE  A  KNK  W L   PKGKK V C+W+YT+K  PDG +++YKA LV +G++Q  GI
Sbjct: 807  LDELEALEKNKT-WDLVPFPKGKKIVNCKWVYTVKQNPDGKVERYKARLVAKGYSQTYGI 865


>emb|CAN76400.1| hypothetical protein VITISV_001550 [Vitis vinifera]
          Length = 626

 Score =  117 bits (293), Expect(3) = 6e-61
 Identities = 69/210 (32%), Positives = 113/210 (53%), Gaps = 4/210 (1%)
 Frame = -1

Query: 618 ILHRINTREVLLAFHVNDXXXXXXXXXXIEDFKKKLREEFEITDLSNVECYLGLQLHKSN 439
           I H  + R   L  +V+D           +   + L +EFEI  L  ++ +LG+++  S 
Sbjct: 329 IKHSSSGRLTTLLVYVDDIIVTGNDDKERQVLNQCLAKEFEIKALGRLKYFLGIEVAHSK 388

Query: 438 NGYVLNQEAYASKLIEEYNLTNSNGRKYPLDSGAKLGEDEAKNIKD---YQALIESVIYL 268
            G  ++Q+ Y + L++E   T       P+D   +L E E     D   YQ L+  +IYL
Sbjct: 389 QGIFISQQKYVTDLLKETGKTACKPASTPIDPILRLREAENDATVDKEMYQHLVGRLIYL 448

Query: 267 TNTTLDIQYLVSLLARAMHKPCKSHTKAAMGILQYIKGTISLGLKFIKNDNLTIEAYCDA 88
           ++T  DI Y VS++++ MH P +SH + A  +LQY+KGT   G+ F +N  L +EAY DA
Sbjct: 449 SHTRPDIAYAVSVISQFMHSPKESHLQVAYRVLQYLKGTPGKGILFKRNGGLVLEAYTDA 508

Query: 87  NFDKD-EEGKSTIGYLVKIGGDLISWASQK 1
           ++     + +ST GY   +GG+L++W + K
Sbjct: 509 DYASSIIDRRSTSGYCTFLGGNLVTWRNLK 538



 Score = 96.7 bits (239), Expect(3) = 6e-61
 Identities = 46/101 (45%), Positives = 70/101 (69%), Gaps = 4/101 (3%)
 Frame = -2

Query: 920 YKDTFAPIAKM*TI*SIISLATKKGWKLHHLDVKSAFLNGDITEEIYMKQPKCYEDQNNL 741
           Y++TFAPIAKM T+  ++SL     W L   DVK+AFL+G++ EEIYM+ P  Y+  NNL
Sbjct: 226 YQETFAPIAKMNTVRVLLSLVANYNWDLQQFDVKNAFLHGELEEEIYMEVPLGYD--NNL 283

Query: 740 S----CRILKSLYGLKQAPRAWYKKLEEFLSTQGFKKSISD 630
           +    C++ K+LYGLKQ+P+AW+ +    + T G+++S+ D
Sbjct: 284 AAHTICKLKKALYGLKQSPQAWFGRFARVMITMGYRQSLGD 324



 Score = 69.7 bits (169), Expect(3) = 6e-61
 Identities = 29/60 (48%), Positives = 43/60 (71%)
 Frame = -3

Query: 1096 MDEEMANMKNKNVWRLEELPKGKK*VGCRWLYTIKLKPDGSLDKYKA*LVIQGFNQKEGI 917
            M+ EM  ++   +W L +LP GKK VGC+W+YT+K + DGS+++YKA LV +G+ Q  GI
Sbjct: 165  MNVEMEALEKNKIWELVKLPTGKKPVGCKWVYTVKYRADGSIERYKARLVAKGYTQTYGI 224


>gb|EXC35359.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus
            notabilis]
          Length = 3263

 Score =  122 bits (306), Expect(3) = 7e-61
 Identities = 68/200 (34%), Positives = 116/200 (58%), Gaps = 4/200 (2%)
 Frame = -1

Query: 588  LLAFHVNDXXXXXXXXXXIEDFKKKLREEFEITDLSNVECYLGLQLHKSNNGYVLNQEAY 409
            +L  +V+D          +++ KK L EEFE+ DL N++ +LG+++ +S+ G V++Q  Y
Sbjct: 1166 ILIVYVDDIILSGNDVKELQELKKYLSEEFEVKDLGNLKYFLGMEVARSSKGIVVSQRKY 1225

Query: 408  ASKLIEEYNLTNSNGRKYPLDSGAKLGEDEAKNIKD---YQALIESVIYLTNTTLDIQYL 238
               L++E  +        P+DS  KLG ++     D   YQ L+  +IYL++T  DI + 
Sbjct: 1226 ILDLLKETGMLGCKPVDTPMDSQKKLGTEKESAPVDRGRYQRLVGRLIYLSHTRPDIGFA 1285

Query: 237  VSLLARAMHKPCKSHTKAAMGILQYIKGTISLGLKFIKNDNLTIEAYCDANFDKD-EEGK 61
            VS++++ MH P + H +A   +L+Y+K T   GL FIK +N   E Y DA++  +  + +
Sbjct: 1286 VSVVSQFMHSPTEEHMEAVYRVLRYLKMTPGKGLFFIKTENRNTEVYSDADWAGNLIDRR 1345

Query: 60   STIGYLVKIGGDLISWASQK 1
            ST GY   + G+L++W S+K
Sbjct: 1346 STSGYCSFVWGNLVTWRSKK 1365



 Score = 96.7 bits (239), Expect(3) = 7e-61
 Identities = 46/99 (46%), Positives = 68/99 (68%), Gaps = 2/99 (2%)
 Frame = -2

Query: 920  YKDTFAPIAKM*TI*SIISLATKKGWKLHHLDVKSAFLNGDITEEIYMKQPKCYEDQ--N 747
            Y++TFAP+AK+ TI  ++SLA  + W L  LD+K+AFLNGD+ EE+YM+ P  +E     
Sbjct: 1053 YQETFAPVAKLNTIRILLSLAVNQDWCLQQLDIKNAFLNGDLEEEVYMEIPPGFEGSMTK 1112

Query: 746  NLSCRILKSLYGLKQAPRAWYKKLEEFLSTQGFKKSISD 630
            N  C++ KSLYGLKQ+PRAW+ +  + +   G+ +  SD
Sbjct: 1113 NQVCKLRKSLYGLKQSPRAWFDRFTKAVLKLGYVQGQSD 1151



 Score = 64.3 bits (155), Expect(3) = 7e-61
 Identities = 26/60 (43%), Positives = 42/60 (70%)
 Frame = -3

Query: 1096 MDEEMANMKNKNVWRLEELPKGKK*VGCRWLYTIKLKPDGSLDKYKA*LVIQGFNQKEGI 917
            + +E+  ++    W + +LP GK+ VGC+W++TIK K DGS++++KA LV +GF Q  GI
Sbjct: 992  VQDEIDALEKNGTWTITDLPGGKRPVGCKWIFTIKYKADGSVERFKARLVARGFTQSYGI 1051


>dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana]
            gi|13872710|emb|CAC37622.1| polyprotein [Arabidopsis
            thaliana]
          Length = 1334

 Score =  122 bits (307), Expect(3) = 1e-60
 Identities = 65/201 (32%), Positives = 119/201 (59%), Gaps = 4/201 (1%)
 Frame = -1

Query: 591  VLLAFHVNDXXXXXXXXXXIEDFKKKLREEFEITDLSNVECYLGLQLHKSNNGYVLNQEA 412
            ++++ +V+D          IE FK  + EEF +TDL  ++ +LG+++ +   G  +NQ  
Sbjct: 1014 LVVSVYVDDLIYTGSSMEMIEGFKNSMMEEFAMTDLGKMKYFLGVEVIQDERGIFINQRK 1073

Query: 411  YASKLIEEYNLTNSNGRKYPLDSGAKL---GEDEAKNIKDYQALIESVIYLTNTTLDIQY 241
            YA+++I++Y +   N  K P+  G KL   G  +A +  +++ LI S+ YLT T  D+ +
Sbjct: 1074 YAAEIIKKYGMEGCNSVKNPIVPGQKLTKAGAGDAVDPTEFKQLIGSLRYLTTTRPDLIF 1133

Query: 240  LVSLLARAMHKPCKSHTKAAMGILQYIKGTISLGLKFIKNDNLTIEAYCDANFDKD-EEG 64
             V+L++R M  P + H  A   IL+Y++GT+ LG+++ +     +  + D+++  D ++ 
Sbjct: 1134 SVNLVSRYMESPNEQHLLAVKRILRYVQGTLDLGIQYERGGATELVGFVDSDYAGDVDDR 1193

Query: 63   KSTIGYLVKIGGDLISWASQK 1
            KST GY+  +GG  I+WAS+K
Sbjct: 1194 KSTSGYVFMLGGGAIAWASKK 1214



 Score =  103 bits (258), Expect(3) = 1e-60
 Identities = 47/95 (49%), Positives = 72/95 (75%), Gaps = 2/95 (2%)
 Frame = -2

Query: 920  YKDTFAPIAKM*TI*SIISLATKKGWKLHHLDVKSAFLNGDITEEIYMKQPKCY--EDQN 747
            + + FAP+AK  TI  I+ LA +KGW +  LDVKSAFL+GD+ E+++++QPK +  E+++
Sbjct: 903  FYEVFAPVAKWDTIRLILGLAAEKGWSVFQLDVKSAFLHGDLKEDVFVEQPKGFEVEEES 962

Query: 746  NLSCRILKSLYGLKQAPRAWYKKLEEFLSTQGFKK 642
            +   ++ K+LYGLKQAPRAWY ++EEF   +GF+K
Sbjct: 963  SKVYKLKKALYGLKQAPRAWYSRIEEFFGKEGFEK 997



 Score = 56.2 bits (134), Expect(3) = 1e-60
 Identities = 22/60 (36%), Positives = 39/60 (65%)
 Frame = -3

Query: 1096 MDEEMANMKNKNVWRLEELPKGKK*VGCRWLYTIKLKPDGSLDKYKA*LVIQGFNQKEGI 917
            M+ E+ +++  N W L ELP+  K +G +W++  K    G +DK+KA LV +G++Q+ G+
Sbjct: 842  MEAEITSIEENNTWELVELPEEAKVIGLKWIFKTKFNEKGEVDKFKARLVAKGYHQRYGV 901


>gb|AAG51247.1|AC055769_6 copia-type polyprotein, putative; 28768-32772 [Arabidopsis thaliana]
          Length = 1334

 Score =  122 bits (307), Expect(3) = 1e-60
 Identities = 65/201 (32%), Positives = 119/201 (59%), Gaps = 4/201 (1%)
 Frame = -1

Query: 591  VLLAFHVNDXXXXXXXXXXIEDFKKKLREEFEITDLSNVECYLGLQLHKSNNGYVLNQEA 412
            ++++ +V+D          IE FK  + EEF +TDL  ++ +LG+++ +   G  +NQ  
Sbjct: 1014 LVVSVYVDDLIYTGSSMEMIEGFKNSMMEEFAMTDLGKMKYFLGVEVIQDERGIFINQRK 1073

Query: 411  YASKLIEEYNLTNSNGRKYPLDSGAKL---GEDEAKNIKDYQALIESVIYLTNTTLDIQY 241
            YA+++I++Y +   N  K P+  G KL   G  +A +  +++ LI S+ YLT T  D+ +
Sbjct: 1074 YAAEIIKKYGMEGCNSVKNPIVPGQKLTKAGAGDAVDPTEFKQLIGSLRYLTTTRPDLIF 1133

Query: 240  LVSLLARAMHKPCKSHTKAAMGILQYIKGTISLGLKFIKNDNLTIEAYCDANFDKD-EEG 64
             V+L++R M  P + H  A   IL+Y++GT+ LG+++ +     +  + D+++  D ++ 
Sbjct: 1134 SVNLVSRYMESPNEQHLLAVKRILRYVQGTLDLGIQYERGGATELVGFVDSDYAGDVDDR 1193

Query: 63   KSTIGYLVKIGGDLISWASQK 1
            KST GY+  +GG  I+WAS+K
Sbjct: 1194 KSTSGYVFMLGGGAIAWASKK 1214



 Score =  103 bits (258), Expect(3) = 1e-60
 Identities = 47/95 (49%), Positives = 72/95 (75%), Gaps = 2/95 (2%)
 Frame = -2

Query: 920  YKDTFAPIAKM*TI*SIISLATKKGWKLHHLDVKSAFLNGDITEEIYMKQPKCY--EDQN 747
            + + FAP+AK  TI  I+ LA +KGW +  LDVKSAFL+GD+ E+++++QPK +  E+++
Sbjct: 903  FYEVFAPVAKWDTIRLILGLAAEKGWSVFQLDVKSAFLHGDLKEDVFVEQPKGFEVEEES 962

Query: 746  NLSCRILKSLYGLKQAPRAWYKKLEEFLSTQGFKK 642
            +   ++ K+LYGLKQAPRAWY ++EEF   +GF+K
Sbjct: 963  SKVYKLKKALYGLKQAPRAWYSRIEEFFGKEGFEK 997



 Score = 56.2 bits (134), Expect(3) = 1e-60
 Identities = 22/60 (36%), Positives = 39/60 (65%)
 Frame = -3

Query: 1096 MDEEMANMKNKNVWRLEELPKGKK*VGCRWLYTIKLKPDGSLDKYKA*LVIQGFNQKEGI 917
            M+ E+ +++  N W L ELP+  K +G +W++  K    G +DK+KA LV +G++Q+ G+
Sbjct: 842  MEAEITSIEENNTWELVELPEEAKVIGLKWIFKTKFNEKGEVDKFKARLVAKGYHQRYGV 901


>emb|CAN75466.1| hypothetical protein VITISV_025054 [Vitis vinifera]
          Length = 1576

 Score =  106 bits (265), Expect(3) = 1e-60
 Identities = 58/178 (32%), Positives = 101/178 (56%), Gaps = 4/178 (2%)
 Frame = -1

Query: 522  KKKLREEFEITDLSNVECYLGLQLHKSNNGYVLNQEAYASKLIEEYNLTNSNGRKYPLDS 343
            KK L +EFEI DL N++ +LG+++ +S  G  ++Q  Y   L+ E  +      + P+D+
Sbjct: 1277 KKLLTKEFEIKDLGNLKYFLGMEIARSKKGIAVSQRKYVLDLLNETGMLGCKPAETPMDT 1336

Query: 342  GAKLGEDEAKNIKD---YQALIESVIYLTNTTLDIQYLVSLLARAMHKPCKSHTKAAMGI 172
              KL E +     D   YQ L+  +IYL++T  DI + +S++++ M+ P + H    + I
Sbjct: 1337 TVKLEESDGSAPDDKGRYQRLVGKLIYLSHTRPDIGFSISVVSQFMNNPTEKHMTTVIRI 1396

Query: 171  LQYIKGTISLGLKFIKNDNLTIEAYCDANF-DKDEEGKSTIGYLVKIGGDLISWASQK 1
            L+Y+K T+  GL F +     IE + DA++     + +ST GY   + G+L++W S+K
Sbjct: 1397 LRYLKMTLGKGLFFQRTTKKEIEIFSDADWAGSVTDRRSTSGYCSFVWGNLVTWRSKK 1454



 Score =  103 bits (256), Expect(3) = 1e-60
 Identities = 49/99 (49%), Positives = 69/99 (69%), Gaps = 2/99 (2%)
 Frame = -2

Query: 920  YKDTFAPIAKM*TI*SIISLATKKGWKLHHLDVKSAFLNGDITEEIYMKQPKCYEDQNNL 741
            Y++TFAP+AK+ T+  ++SLA    W LH LDVK+AFLNGD+ EE+YM  P   E  +N 
Sbjct: 1142 YQETFAPVAKLNTVRVLLSLAANLDWSLHQLDVKNAFLNGDLEEEVYMDIPAGLETTSNF 1201

Query: 740  S--CRILKSLYGLKQAPRAWYKKLEEFLSTQGFKKSISD 630
            +  CR+ KSLYGLKQ+PRAW+++  + +   GF +  SD
Sbjct: 1202 NKVCRLRKSLYGLKQSPRAWFERFTKVVKGYGFVQCQSD 1240



 Score = 72.8 bits (177), Expect(3) = 1e-60
 Identities = 29/60 (48%), Positives = 44/60 (73%)
 Frame = -3

Query: 1096 MDEEMANMKNKNVWRLEELPKGKK*VGCRWLYTIKLKPDGSLDKYKA*LVIQGFNQKEGI 917
            +DEE+  ++    W + +LP+GKK VGC+W++T+K K DG++D+YKA LV +GF Q  GI
Sbjct: 1081 VDEEVRALEKNGTWEITDLPRGKKPVGCKWIFTVKYKADGNVDRYKARLVAKGFTQSYGI 1140


>emb|CAN73102.1| hypothetical protein VITISV_042891 [Vitis vinifera]
          Length = 1493

 Score =  113 bits (282), Expect(3) = 1e-60
 Identities = 63/201 (31%), Positives = 112/201 (55%), Gaps = 2/201 (0%)
 Frame = -1

Query: 597  REVLLAFHVNDXXXXXXXXXXIEDFKKKLREEFEITDLSNVECYLGLQLHKSNNGYVLNQ 418
            R  +L  +V+D          +E  KK L  EFE+ DL  +  +LG+++ +S  G  ++Q
Sbjct: 1171 RMTILIVYVDDIILTGDDTGEVERLKKVLATEFEVKDLGQMRYFLGMEVARSRKGISISQ 1230

Query: 417  EAYASKLIEEYNLTNSNGRKYPLDSGAKLGED-EAKNIKDYQALIESVIYLTNTTLDIQY 241
              Y   L+ E  +        P+ +  ++  D +  + + YQ L+  +IYL++T  DI +
Sbjct: 1231 RKYVLDLLTETGMLGCKPSDTPIKARNRMESDGKPVDREKYQRLVGRLIYLSHTRPDIAF 1290

Query: 240  LVSLLARAMHKPCKSHTKAAMGILQYIKGTISLGLKFIKNDNLTIEAYCDANF-DKDEEG 64
             VS++++ MH P +SH +A   IL+Y+KG+   GL F K+D+  +E Y DA++    ++ 
Sbjct: 1291 AVSVVSQYMHSPKESHLEAVYKILRYLKGSPGRGLFFKKSDSKKVEIYTDADWAGXADDR 1350

Query: 63   KSTIGYLVKIGGDLISWASQK 1
            +ST GY   + G+L++W S+K
Sbjct: 1351 RSTTGYCTYVWGNLVTWRSKK 1371



 Score =  102 bits (255), Expect(3) = 1e-60
 Identities = 46/104 (44%), Positives = 69/104 (66%), Gaps = 2/104 (1%)
 Frame = -2

Query: 920  YKDTFAPIAKM*TI*SIISLATKKGWKLHHLDVKSAFLNGDITEEIYMKQPK--CYEDQN 747
            Y +TFAP+AK+ TI  ++SLA    W LH  D+K+AFLNG++ EE++M  P   C E++ 
Sbjct: 1061 YTETFAPVAKLNTIRVLLSLAANLDWPLHQFDIKNAFLNGELEEEVFMMLPPGFCKEEEE 1120

Query: 746  NLSCRILKSLYGLKQAPRAWYKKLEEFLSTQGFKKSISDPNYLF 615
               C++ KSLYGLKQ+PRAW+ +  + +  QG+++  SD    F
Sbjct: 1121 TRVCKLKKSLYGLKQSPRAWFDRFAKVIKNQGYQQGQSDHTMFF 1164



 Score = 66.6 bits (161), Expect(3) = 1e-60
 Identities = 27/58 (46%), Positives = 41/58 (70%)
 Frame = -3

Query: 1090 EEMANMKNKNVWRLEELPKGKK*VGCRWLYTIKLKPDGSLDKYKA*LVIQGFNQKEGI 917
            EE+  ++    W +  LP+GKK VGC+W++T+K K DG++++YKA LV +GF Q  GI
Sbjct: 1002 EEIRALEKNETWEVMNLPRGKKPVGCKWIFTVKYKADGTVERYKARLVAKGFTQTYGI 1059