BLASTX nr result
ID: Ephedra25_contig00000853
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra25_contig00000853
(1228 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004291185.1| PREDICTED: exosome complex exonuclease RRP46... 194 6e-47
ref|XP_001775388.1| predicted protein [Physcomitrella patens] gi... 194 6e-47
ref|XP_002281273.1| PREDICTED: exosome complex exonuclease RRP46... 194 8e-47
emb|CBI20856.3| unnamed protein product [Vitis vinifera] 194 8e-47
ref|XP_004164036.1| PREDICTED: exosome complex exonuclease RRP46... 193 1e-46
ref|XP_004150286.1| PREDICTED: exosome complex exonuclease RRP46... 193 1e-46
gb|EMJ24979.1| hypothetical protein PRUPE_ppa010603mg [Prunus pe... 193 1e-46
ref|XP_006650920.1| PREDICTED: exosome complex exonuclease RRP46... 191 5e-46
ref|XP_006450678.1| hypothetical protein CICLE_v10009310mg [Citr... 191 7e-46
ref|XP_002324223.2| hypothetical protein POPTR_0018s00300g [Popu... 191 7e-46
ref|XP_006476041.1| PREDICTED: exosome complex exonuclease RRP46... 189 3e-45
ref|XP_003552384.1| PREDICTED: exosome complex exonuclease RRP46... 189 3e-45
ref|XP_003534569.1| PREDICTED: exosome complex exonuclease RRP46... 188 3e-45
ref|XP_006359768.1| PREDICTED: exosome complex exonuclease RRP46... 188 4e-45
ref|XP_002463494.1| hypothetical protein SORBIDRAFT_01g000760 [S... 188 4e-45
ref|XP_003560307.1| PREDICTED: exosome complex exonuclease RRP46... 186 1e-44
ref|XP_004245172.1| PREDICTED: exosome complex exonuclease RRP46... 186 2e-44
pdb|3HKM|A Chain A, Crystal Structure Of Rice(Oryza Sativa) Rrp4... 186 2e-44
ref|NP_001051936.1| Os03g0854200 [Oryza sativa Japonica Group] g... 186 2e-44
gb|EEC76561.1| hypothetical protein OsI_14380 [Oryza sativa Indi... 185 4e-44
>ref|XP_004291185.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Fragaria
vesca subsp. vesca]
Length = 238
Score = 194 bits (493), Expect = 6e-47
Identities = 108/232 (46%), Positives = 137/232 (59%), Gaps = 1/232 (0%)
Frame = +3
Query: 39 LRMARADGRSANELRTLSCTXXXXXXXXXXXXWSQDGTIVLAAVYGPXXXXXXXXXXXXX 218
+ + R DGR+ N+LR L+CT W Q T VLAAVYGP
Sbjct: 1 MEIDRLDGRTPNQLRPLACTRNVLNRAHGSASWCQGDTKVLAAVYGPKAGTKRNENPEKA 60
Query: 219 -LEVTWKPKTGLPGKPEKECEQILKRTLDFIFLSAMLPNSSIAVILQVVNDDGXXXXXXX 395
+EV WKPKTG GK E+E E ILKRTL I + + PN++ +VI+QVVNDDG
Sbjct: 61 CIEVIWKPKTGQSGKAEREYEMILKRTLQSICILTLNPNTTTSVIIQVVNDDGALLPCAI 120
Query: 396 XXXXXXXXXXGVPLKNTYAAICCGVRENGEVILDPSKTEEQELQAHVHLVFPTRPLTVLS 575
G+PLK+ AICC + E+G VILDPSK EEQ+++A V+LVFP L+ L
Sbjct: 121 NAACAALVDAGIPLKHLSVAICCCLAESGYVILDPSKLEEQKMKAFVYLVFPNSVLSNLP 180
Query: 576 ENQATKDNERIERGIITSVTRGAMSVESYLDCMERGGAAALKISEFVRSIIE 731
E Q E +E GIITSVT+GAM VE YL C+ERG AA K+S F+R ++
Sbjct: 181 EGQLKVQGEPMEHGIITSVTQGAMPVEDYLHCLERGRAATAKMSAFLRKSLQ 232
>ref|XP_001775388.1| predicted protein [Physcomitrella patens]
gi|162673333|gb|EDQ59858.1| predicted protein
[Physcomitrella patens]
Length = 256
Score = 194 bits (493), Expect = 6e-47
Identities = 104/229 (45%), Positives = 141/229 (61%), Gaps = 1/229 (0%)
Frame = +3
Query: 51 RADGRSANELRTLSCTXXXXXXXXXXXXWSQDGTIVLAAVYGPXXXXXXXXXXXXXL-EV 227
RADGRSA++LR LS + WSQ+ T VLAAVYGP + EV
Sbjct: 19 RADGRSASQLRPLSLSRGLLTRAHGSATWSQENTTVLAAVYGPKPAAMKKENAERAIIEV 78
Query: 228 TWKPKTGLPGKPEKECEQILKRTLDFIFLSAMLPNSSIAVILQVVNDDGXXXXXXXXXXX 407
W+ K+GL G EK+ E +++R+L++I L+A+ PN++I+VILQV+NDDG
Sbjct: 79 VWRAKSGLSGSYEKDAEVVVRRSLEYIILTALHPNTAISVILQVINDDGSLLACAMNAAC 138
Query: 408 XXXXXXGVPLKNTYAAICCGVRENGEVILDPSKTEEQELQAHVHLVFPTRPLTVLSENQA 587
G+PL +A+ CGV +G+V LDP+K EEQ+ +A+V VFP+R L+ + E A
Sbjct: 139 AALVDAGIPLNGLLSAVSCGVTHDGQVFLDPTKPEEQKCKAYVSFVFPSRRLSAVPELPA 198
Query: 588 TKDNERIERGIITSVTRGAMSVESYLDCMERGGAAALKISEFVRSIIEK 734
D E +E GI+TSVTRGAM VE Y C+E AAA K+SEF RS IE+
Sbjct: 199 DVDGEPVEYGILTSVTRGAMEVEEYFSCVENCRAAAAKVSEFSRSSIEQ 247
>ref|XP_002281273.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Vitis
vinifera]
Length = 245
Score = 194 bits (492), Expect = 8e-47
Identities = 104/234 (44%), Positives = 141/234 (60%), Gaps = 1/234 (0%)
Frame = +3
Query: 39 LRMARADGRSANELRTLSCTXXXXXXXXXXXXWSQDGTIVLAAVYGPXXXXXXXXXXXXX 218
+ + R DGR+AN+LR L+C+ WSQ T VLAAVYGP
Sbjct: 3 MEIGRDDGRTANQLRPLACSRNILNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 62
Query: 219 -LEVTWKPKTGLPGKPEKECEQILKRTLDFIFLSAMLPNSSIAVILQVVNDDGXXXXXXX 395
+EV WKPKTG GKPEKE E ILKRTL I L + PN++ ++I+QVV+DDG
Sbjct: 63 CIEVVWKPKTGQIGKPEKEYEVILKRTLKSICLLNINPNTTTSIIIQVVSDDGALLPCAI 122
Query: 396 XXXXXXXXXXGVPLKNTYAAICCGVRENGEVILDPSKTEEQELQAHVHLVFPTRPLTVLS 575
+PLK+ AICC + E+G VILDP+K EEQ+++A +LVFP ++++
Sbjct: 123 NAACAALVDAAIPLKHLAVAICCCLTESGYVILDPTKVEEQKMKAFAYLVFPNSAISIIP 182
Query: 576 ENQATKDNERIERGIITSVTRGAMSVESYLDCMERGGAAALKISEFVRSIIEKQ 737
E + + E +E GIITSVT G MSV+ YL C+ERG AA+ K+S F+R ++ Q
Sbjct: 183 EGSSHMEGELMEHGIITSVTHGVMSVDDYLHCLERGQAASTKMSAFLRRSLQSQ 236
>emb|CBI20856.3| unnamed protein product [Vitis vinifera]
Length = 243
Score = 194 bits (492), Expect = 8e-47
Identities = 104/234 (44%), Positives = 141/234 (60%), Gaps = 1/234 (0%)
Frame = +3
Query: 39 LRMARADGRSANELRTLSCTXXXXXXXXXXXXWSQDGTIVLAAVYGPXXXXXXXXXXXXX 218
+ + R DGR+AN+LR L+C+ WSQ T VLAAVYGP
Sbjct: 1 MEIGRDDGRTANQLRPLACSRNILNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
Query: 219 -LEVTWKPKTGLPGKPEKECEQILKRTLDFIFLSAMLPNSSIAVILQVVNDDGXXXXXXX 395
+EV WKPKTG GKPEKE E ILKRTL I L + PN++ ++I+QVV+DDG
Sbjct: 61 CIEVVWKPKTGQIGKPEKEYEVILKRTLKSICLLNINPNTTTSIIIQVVSDDGALLPCAI 120
Query: 396 XXXXXXXXXXGVPLKNTYAAICCGVRENGEVILDPSKTEEQELQAHVHLVFPTRPLTVLS 575
+PLK+ AICC + E+G VILDP+K EEQ+++A +LVFP ++++
Sbjct: 121 NAACAALVDAAIPLKHLAVAICCCLTESGYVILDPTKVEEQKMKAFAYLVFPNSAISIIP 180
Query: 576 ENQATKDNERIERGIITSVTRGAMSVESYLDCMERGGAAALKISEFVRSIIEKQ 737
E + + E +E GIITSVT G MSV+ YL C+ERG AA+ K+S F+R ++ Q
Sbjct: 181 EGSSHMEGELMEHGIITSVTHGVMSVDDYLHCLERGQAASTKMSAFLRRSLQSQ 234
>ref|XP_004164036.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis
sativus]
Length = 243
Score = 193 bits (491), Expect = 1e-46
Identities = 104/234 (44%), Positives = 140/234 (59%), Gaps = 1/234 (0%)
Frame = +3
Query: 39 LRMARADGRSANELRTLSCTXXXXXXXXXXXXWSQDGTIVLAAVYGPXXXXXXXXXXXXX 218
+ + R DGR+ N+LR L+C+ WSQ T VLAAVYGP
Sbjct: 1 MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
Query: 219 -LEVTWKPKTGLPGKPEKECEQILKRTLDFIFLSAMLPNSSIAVILQVVNDDGXXXXXXX 395
+EV WKPKTG GK E+ECE ILKRTL I + PN++ ++I+QV++DDG
Sbjct: 61 SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120
Query: 396 XXXXXXXXXXGVPLKNTYAAICCGVRENGEVILDPSKTEEQELQAHVHLVFPTRPLTVLS 575
G+PLK+ AI C + ENG VILDP+K EE++++A VHLVFP P++V+
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVP 180
Query: 576 ENQATKDNERIERGIITSVTRGAMSVESYLDCMERGGAAALKISEFVRSIIEKQ 737
E E +E GIITSVT+GAMSV+ Y+ C+ERG AA K+S F+R ++ Q
Sbjct: 181 EGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQ 234
>ref|XP_004150286.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis
sativus]
Length = 243
Score = 193 bits (491), Expect = 1e-46
Identities = 104/234 (44%), Positives = 140/234 (59%), Gaps = 1/234 (0%)
Frame = +3
Query: 39 LRMARADGRSANELRTLSCTXXXXXXXXXXXXWSQDGTIVLAAVYGPXXXXXXXXXXXXX 218
+ + R DGR+ N+LR L+C+ WSQ T VLAAVYGP
Sbjct: 1 MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
Query: 219 -LEVTWKPKTGLPGKPEKECEQILKRTLDFIFLSAMLPNSSIAVILQVVNDDGXXXXXXX 395
+EV WKPKTG GK E+ECE ILKRTL I + PN++ ++I+QV++DDG
Sbjct: 61 SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120
Query: 396 XXXXXXXXXXGVPLKNTYAAICCGVRENGEVILDPSKTEEQELQAHVHLVFPTRPLTVLS 575
G+PLK+ AI C + ENG VILDP+K EE++++A VHLVFP P++V+
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVP 180
Query: 576 ENQATKDNERIERGIITSVTRGAMSVESYLDCMERGGAAALKISEFVRSIIEKQ 737
E E +E GIITSVT+GAMSV+ Y+ C+ERG AA K+S F+R ++ Q
Sbjct: 181 EGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQ 234
>gb|EMJ24979.1| hypothetical protein PRUPE_ppa010603mg [Prunus persica]
Length = 243
Score = 193 bits (490), Expect = 1e-46
Identities = 104/234 (44%), Positives = 138/234 (58%), Gaps = 1/234 (0%)
Frame = +3
Query: 39 LRMARADGRSANELRTLSCTXXXXXXXXXXXXWSQDGTIVLAAVYGPXXXXXXXXXXXXX 218
+ + R DGR+ N+LR L+C+ W Q T VL AVYGP
Sbjct: 1 MEIDRLDGRTPNQLRPLACSRNVLNRAHGSASWCQGDTKVLVAVYGPKAGTKKNENPEKA 60
Query: 219 -LEVTWKPKTGLPGKPEKECEQILKRTLDFIFLSAMLPNSSIAVILQVVNDDGXXXXXXX 395
+E+ WKPKTG GK E+E E ILKRTL I + + PN++ +VI+QVVNDDG
Sbjct: 61 CIEIIWKPKTGQSGKLEREYEMILKRTLQSICILTLNPNTTTSVIIQVVNDDGALLPCAI 120
Query: 396 XXXXXXXXXXGVPLKNTYAAICCGVRENGEVILDPSKTEEQELQAHVHLVFPTRPLTVLS 575
G+PLK+ AICC + E+G V+LDPSK EEQ+++A +LVFP L++L
Sbjct: 121 NAACAALVDAGIPLKHLAVAICCCLAESGYVVLDPSKLEEQKMKAFAYLVFPNSVLSILP 180
Query: 576 ENQATKDNERIERGIITSVTRGAMSVESYLDCMERGGAAALKISEFVRSIIEKQ 737
E Q E +E GIITSVT+GAMSV+ YL C+ERG AA K+S F+R ++ Q
Sbjct: 181 EEQLQVGGEPVEHGIITSVTQGAMSVDDYLHCLERGRAATAKMSAFLRKSLQPQ 234
>ref|XP_006650920.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Oryza
brachyantha]
Length = 238
Score = 191 bits (485), Expect = 5e-46
Identities = 109/230 (47%), Positives = 138/230 (60%), Gaps = 1/230 (0%)
Frame = +3
Query: 51 RADGRSANELRTLSCTXXXXXXXXXXXXWSQDGTIVLAAVYGPXXXXXXXXXXXXX-LEV 227
RADGR+AN+LR SCT W+Q TIVLAAVYGP +EV
Sbjct: 5 RADGRNANQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIEV 64
Query: 228 TWKPKTGLPGKPEKECEQILKRTLDFIFLSAMLPNSSIAVILQVVNDDGXXXXXXXXXXX 407
WKP TG GK EKE E LKRTL I L + PN++ +VILQVV DDG
Sbjct: 65 VWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGDDGSLLPCAINASC 124
Query: 408 XXXXXXGVPLKNTYAAICCGVRENGEVILDPSKTEEQELQAHVHLVFPTRPLTVLSENQA 587
G+PLK+ AI CGV E+GEVILD SK+EEQ+L++ HLVFP + S+ +A
Sbjct: 125 AALVFAGIPLKHLAVAIGCGVLEDGEVILDTSKSEEQQLKSFAHLVFPNSRKSAGSK-EA 183
Query: 588 TKDNERIERGIITSVTRGAMSVESYLDCMERGGAAALKISEFVRSIIEKQ 737
+ E ERG+ITS+T G MS E Y C+ERG AA+ +IS+F+R+ ++KQ
Sbjct: 184 NQKEEDSERGLITSITHGVMSEEDYFSCIERGLAASSRISDFMRTTLQKQ 233
>ref|XP_006450678.1| hypothetical protein CICLE_v10009310mg [Citrus clementina]
gi|567917348|ref|XP_006450680.1| hypothetical protein
CICLE_v10009310mg [Citrus clementina]
gi|557553904|gb|ESR63918.1| hypothetical protein
CICLE_v10009310mg [Citrus clementina]
gi|557553906|gb|ESR63920.1| hypothetical protein
CICLE_v10009310mg [Citrus clementina]
Length = 243
Score = 191 bits (484), Expect = 7e-46
Identities = 104/234 (44%), Positives = 140/234 (59%), Gaps = 1/234 (0%)
Frame = +3
Query: 39 LRMARADGRSANELRTLSCTXXXXXXXXXXXXWSQDGTIVLAAVYGPXXXXXXXXXXXXX 218
+ + RADGR+ N+LR L+C+ WSQ T VLAAVYGP
Sbjct: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
Query: 219 -LEVTWKPKTGLPGKPEKECEQILKRTLDFIFLSAMLPNSSIAVILQVVNDDGXXXXXXX 395
+EV WKP+TG GKPEKE E ILKRTL I + + PN++ +VI+QVV+DDG
Sbjct: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
Query: 396 XXXXXXXXXXGVPLKNTYAAICCGVRENGEVILDPSKTEEQELQAHVHLVFPTRPLTVLS 575
G+P+K+ AICC E+G ILDP+K EEQ+++A +LVFP L+VL
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKAFAYLVFPNSILSVLP 180
Query: 576 ENQATKDNERIERGIITSVTRGAMSVESYLDCMERGGAAALKISEFVRSIIEKQ 737
E + E +E GIITSVT GAMSV+ Y C+ERG AA+ K+S+F+R ++ +
Sbjct: 181 EGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
>ref|XP_002324223.2| hypothetical protein POPTR_0018s00300g [Populus trichocarpa]
gi|550317698|gb|EEF02788.2| hypothetical protein
POPTR_0018s00300g [Populus trichocarpa]
Length = 243
Score = 191 bits (484), Expect = 7e-46
Identities = 105/230 (45%), Positives = 136/230 (59%), Gaps = 1/230 (0%)
Frame = +3
Query: 51 RADGRSANELRTLSCTXXXXXXXXXXXXWSQDGTIVLAAVYGPXXXXXXXXXXXXX-LEV 227
R DGRS ++LR LSC WSQ T VLAAVYGP +EV
Sbjct: 5 RDDGRSPSQLRPLSCARNVLHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKACIEV 64
Query: 228 TWKPKTGLPGKPEKECEQILKRTLDFIFLSAMLPNSSIAVILQVVNDDGXXXXXXXXXXX 407
WKPKTG GK EKE E ILKRTL I + + PN++ ++I+QVVNDDG
Sbjct: 65 IWKPKTGQIGKLEKEFEMILKRTLQSICILTLNPNTTTSIIVQVVNDDGALLVCAINAAC 124
Query: 408 XXXXXXGVPLKNTYAAICCGVRENGEVILDPSKTEEQELQAHVHLVFPTRPLTVLSENQA 587
G+P+K+ AICC + E G VILDP+K EEQ+++ +LVFP ++VL E +
Sbjct: 125 AALVDAGIPMKHLAVAICCCLAEGGYVILDPTKLEEQKMRGFAYLVFPNSVVSVLPEGLS 184
Query: 588 TKDNERIERGIITSVTRGAMSVESYLDCMERGGAAALKISEFVRSIIEKQ 737
+ E +E GIITSVT G MSVE YL C+ERG AA+ K+S+F+R ++ Q
Sbjct: 185 HVEGEPMEHGIITSVTHGVMSVEEYLKCLERGRAASTKLSDFLRRSLQSQ 234
>ref|XP_006476041.1| PREDICTED: exosome complex exonuclease RRP46 homolog isoform X1
[Citrus sinensis] gi|568844330|ref|XP_006476042.1|
PREDICTED: exosome complex exonuclease RRP46 homolog
isoform X2 [Citrus sinensis]
gi|568844332|ref|XP_006476043.1| PREDICTED: exosome
complex exonuclease RRP46 homolog isoform X3 [Citrus
sinensis]
Length = 243
Score = 189 bits (479), Expect = 3e-45
Identities = 103/234 (44%), Positives = 139/234 (59%), Gaps = 1/234 (0%)
Frame = +3
Query: 39 LRMARADGRSANELRTLSCTXXXXXXXXXXXXWSQDGTIVLAAVYGPXXXXXXXXXXXXX 218
+ + RADGR+ N+LR L+C+ WSQ T VLAAVYGP
Sbjct: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
Query: 219 -LEVTWKPKTGLPGKPEKECEQILKRTLDFIFLSAMLPNSSIAVILQVVNDDGXXXXXXX 395
+EV WKP+TG GKPEKE E ILKRTL I + + PN++ + I+QVV+DDG
Sbjct: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSFIIQVVHDDGALLPCAI 120
Query: 396 XXXXXXXXXXGVPLKNTYAAICCGVRENGEVILDPSKTEEQELQAHVHLVFPTRPLTVLS 575
G+P+K+ AICC E+G ILDP+K EEQ+++A +LVFP L+VL
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKAFAYLVFPNSILSVLP 180
Query: 576 ENQATKDNERIERGIITSVTRGAMSVESYLDCMERGGAAALKISEFVRSIIEKQ 737
E + E +E GIITSVT GAMSV+ Y C+ERG AA+ K+S+F+R ++ +
Sbjct: 181 EGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
>ref|XP_003552384.1| PREDICTED: exosome complex exonuclease RRP46 homolog isoform X1
[Glycine max] gi|571548374|ref|XP_006602785.1|
PREDICTED: exosome complex exonuclease RRP46 homolog
isoform X2 [Glycine max]
Length = 243
Score = 189 bits (479), Expect = 3e-45
Identities = 102/228 (44%), Positives = 139/228 (60%), Gaps = 1/228 (0%)
Frame = +3
Query: 51 RADGRSANELRTLSCTXXXXXXXXXXXXWSQDGTIVLAAVYGPXXXXXXXXXXXXX-LEV 227
R DGR+ N+LR L C+ W+Q T VLAAVYGP +EV
Sbjct: 5 RPDGRTPNQLRPLVCSCSILHRSHGSASWAQGETKVLAAVYGPKAGTKKSENPEKASIEV 64
Query: 228 TWKPKTGLPGKPEKECEQILKRTLDFIFLSAMLPNSSIAVILQVVNDDGXXXXXXXXXXX 407
WKPKTG GK EKE E ILKRTL+ I + + PN++ +VI+QVV+DDG
Sbjct: 65 IWKPKTGQIGKVEKEYEMILKRTLESICIRTIYPNTTTSVIVQVVHDDGALLPCAINAAC 124
Query: 408 XXXXXXGVPLKNTYAAICCGVRENGEVILDPSKTEEQELQAHVHLVFPTRPLTVLSENQA 587
G+PLK+ AICC V ++G +ILDP+K EE++++A ++LVFP ++VL E
Sbjct: 125 AALVDAGIPLKHLAVAICCSVTDSGCIILDPTKDEEEKMKAFINLVFPNTIVSVLPEGSL 184
Query: 588 TKDNERIERGIITSVTRGAMSVESYLDCMERGGAAALKISEFVRSIIE 731
+E + GI+TS+T+GAMSV+ YL C+ERG AA+ ++SEFVR IE
Sbjct: 185 QAGSEPMAHGIMTSITQGAMSVDDYLHCLERGRAASARLSEFVRKNIE 232
>ref|XP_003534569.1| PREDICTED: exosome complex exonuclease RRP46 homolog isoform X1
[Glycine max] gi|571479421|ref|XP_006587855.1|
PREDICTED: exosome complex exonuclease RRP46 homolog
isoform X2 [Glycine max]
Length = 243
Score = 188 bits (478), Expect = 3e-45
Identities = 101/227 (44%), Positives = 141/227 (62%), Gaps = 1/227 (0%)
Frame = +3
Query: 51 RADGRSANELRTLSCTXXXXXXXXXXXXWSQDGTIVLAAVYGPXXXXXXXXXXXXX-LEV 227
R DGR+ N+LR L+C+ W+Q T VLAAVYGP +EV
Sbjct: 5 RPDGRTPNQLRPLACSCSILHRAHGSASWAQGETKVLAAVYGPKAGTKKNENPEKASIEV 64
Query: 228 TWKPKTGLPGKPEKECEQILKRTLDFIFLSAMLPNSSIAVILQVVNDDGXXXXXXXXXXX 407
WKPKTG GK EKE E ILKRTL+ I + + PN++ +VI+QVV+DDG
Sbjct: 65 IWKPKTGQIGKLEKEYEMILKRTLESICIRTIYPNTTTSVIVQVVHDDGALLPCAINAAC 124
Query: 408 XXXXXXGVPLKNTYAAICCGVRENGEVILDPSKTEEQELQAHVHLVFPTRPLTVLSENQA 587
G+PLK+ AICC V ++G +ILDP+K EE++++A+++LVFP ++VL E +
Sbjct: 125 TALVDAGIPLKHLAVAICCSVTDSGCIILDPTKEEEEKMKAYINLVFPNTIVSVLPERSS 184
Query: 588 TKDNERIERGIITSVTRGAMSVESYLDCMERGGAAALKISEFVRSII 728
+E + GI+TSVT+GAMSV+ YL C++RG AA+ ++SEFVR I
Sbjct: 185 QVGSEPMAHGIMTSVTQGAMSVDDYLHCLDRGRAASARLSEFVRKNI 231
>ref|XP_006359768.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Solanum
tuberosum]
Length = 238
Score = 188 bits (477), Expect = 4e-45
Identities = 103/230 (44%), Positives = 134/230 (58%), Gaps = 1/230 (0%)
Frame = +3
Query: 51 RADGRSANELRTLSCTXXXXXXXXXXXXWSQDGTIVLAAVYGPXXXXXXXXXXXXX-LEV 227
R DGR+AN+LR LSC+ WSQ T VLAAVYGP EV
Sbjct: 5 RKDGRTANQLRPLSCSRNVLNRAHGSASWSQGETKVLAAVYGPKAGTNKNENPEKACFEV 64
Query: 228 TWKPKTGLPGKPEKECEQILKRTLDFIFLSAMLPNSSIAVILQVVNDDGXXXXXXXXXXX 407
WKPKTG GK EKE E ILK+T+ I + + PN++ ++I+QVVNDDG
Sbjct: 65 IWKPKTGQIGKEEKEYEMILKKTVQSICVLNVHPNTTTSIIIQVVNDDGALLPCAINALC 124
Query: 408 XXXXXXGVPLKNTYAAICCGVRENGEVILDPSKTEEQELQAHVHLVFPTRPLTVLSENQA 587
G+PLK+ AICC + E+G ++LDPSK EEQ ++A V+LVFP L+VL E
Sbjct: 125 AALVDAGIPLKHLAVAICCTLTESGHILLDPSKLEEQRMKAFVYLVFPNSTLSVLPEEAL 184
Query: 588 TKDNERIERGIITSVTRGAMSVESYLDCMERGGAAALKISEFVRSIIEKQ 737
E +E G+ITS T G MSV+ Y+ C+ERG AA K+S+F R ++ Q
Sbjct: 185 KVRGEPMEHGLITSSTHGVMSVDDYIRCLERGRAATSKLSDFFRRNLQSQ 234
>ref|XP_002463494.1| hypothetical protein SORBIDRAFT_01g000760 [Sorghum bicolor]
gi|241917348|gb|EER90492.1| hypothetical protein
SORBIDRAFT_01g000760 [Sorghum bicolor]
Length = 239
Score = 188 bits (477), Expect = 4e-45
Identities = 102/233 (43%), Positives = 138/233 (59%), Gaps = 1/233 (0%)
Frame = +3
Query: 48 ARADGRSANELRTLSCTXXXXXXXXXXXXWSQDGTIVLAAVYGPXXXXXXXXXXXXX-LE 224
+RADGR+ N+LR SCT W+Q T+VLAAVYGP +E
Sbjct: 5 SRADGRNPNQLRPFSCTGNPLHRAHGSARWAQGDTVVLAAVYGPKPGTRKGENPEKASIE 64
Query: 225 VTWKPKTGLPGKPEKECEQILKRTLDFIFLSAMLPNSSIAVILQVVNDDGXXXXXXXXXX 404
V WKPKTG G+ E+E E LKRTL I L + PN++ +V+LQVV DDG
Sbjct: 65 VVWKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGDDGSLLPCAINAS 124
Query: 405 XXXXXXXGVPLKNTYAAICCGVRENGEVILDPSKTEEQELQAHVHLVFPTRPLTVLSENQ 584
G+P+K+ AICCGV +NG VILD S EEQ+ ++ HLVFP +V S++
Sbjct: 125 CAALAFAGIPMKHLAVAICCGVMDNGAVILDTSTAEEQQAKSFAHLVFPNSRKSVDSKDP 184
Query: 585 ATKDNERIERGIITSVTRGAMSVESYLDCMERGGAAALKISEFVRSIIEKQGS 743
KD E ERG+I+ +T G MS ++Y +C+ERG AA+ KIS+F+R ++K+ S
Sbjct: 185 MQKDEES-ERGLISCITHGTMSEDNYFNCIERGIAASSKISDFMRKTLQKEAS 236
>ref|XP_003560307.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Brachypodium
distachyon]
Length = 238
Score = 186 bits (473), Expect = 1e-44
Identities = 105/231 (45%), Positives = 134/231 (58%), Gaps = 1/231 (0%)
Frame = +3
Query: 48 ARADGRSANELRTLSCTXXXXXXXXXXXXWSQDGTIVLAAVYGPXXXXXXXXXXXXX-LE 224
+R DGR+AN+LR +C WSQ T+VLAAVYGP +E
Sbjct: 4 SRGDGRNANQLRPFTCARNPLDRAHGSARWSQGDTVVLAAVYGPRPGTRKGENPEKASIE 63
Query: 225 VTWKPKTGLPGKPEKECEQILKRTLDFIFLSAMLPNSSIAVILQVVNDDGXXXXXXXXXX 404
V WKPKTG GK EK E LKRTL I L + PN++ +VILQV+ DDG
Sbjct: 64 VVWKPKTGQSGKQEKGYEMTLKRTLQSICLLTVHPNTTTSVILQVMGDDGSLLPCAINAS 123
Query: 405 XXXXXXXGVPLKNTYAAICCGVRENGEVILDPSKTEEQELQAHVHLVFPTRPLTVLSENQ 584
G+PLK+ AI CGV NG VILD SK EEQEL++ HLVFP +V S+
Sbjct: 124 CAALVFAGIPLKHLAVAIGCGVLGNGAVILDTSKAEEQELKSFAHLVFPNSRKSVESKES 183
Query: 585 ATKDNERIERGIITSVTRGAMSVESYLDCMERGGAAALKISEFVRSIIEKQ 737
KD E ERG++TS+T G MS + Y C+ERG AA+ +IS+F+R+ ++KQ
Sbjct: 184 QQKD-EHSERGLLTSITHGVMSEDEYFSCIERGLAASSRISDFMRTTLQKQ 233
>ref|XP_004245172.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Solanum
lycopersicum]
Length = 232
Score = 186 bits (471), Expect = 2e-44
Identities = 102/228 (44%), Positives = 132/228 (57%), Gaps = 1/228 (0%)
Frame = +3
Query: 39 LRMARADGRSANELRTLSCTXXXXXXXXXXXXWSQDGTIVLAAVYGPXXXXXXXXXXXXX 218
+ + R DGR+AN+LR LSC WSQ T VLAAVYGP
Sbjct: 1 MEIDRKDGRTANQLRPLSCARNVLNRAHGSASWSQGETKVLAAVYGPKAGTNKNENPEKA 60
Query: 219 -LEVTWKPKTGLPGKPEKECEQILKRTLDFIFLSAMLPNSSIAVILQVVNDDGXXXXXXX 395
EV WKPKTG GK EKE E ILK+T+ I + + PN++ ++I+QVVNDDG
Sbjct: 61 CFEVIWKPKTGQIGKAEKEYEMILKKTVQSICVLNVHPNTTTSIIIQVVNDDGALLPCAI 120
Query: 396 XXXXXXXXXXGVPLKNTYAAICCGVRENGEVILDPSKTEEQELQAHVHLVFPTRPLTVLS 575
G+PLK+ AICC + E+G ++LDPSK EEQ ++A V+LVFP L+VL
Sbjct: 121 NALCAALVDAGIPLKHLAVAICCCLTESGHILLDPSKLEEQRMKAFVYLVFPNSTLSVLP 180
Query: 576 ENQATKDNERIERGIITSVTRGAMSVESYLDCMERGGAAALKISEFVR 719
E E +E G+ITS T G MSV+ Y+ C+ERG AA K+S+F R
Sbjct: 181 EEALKVRGEPMEHGLITSSTHGVMSVDDYIRCLERGRAATSKLSDFFR 228
>pdb|3HKM|A Chain A, Crystal Structure Of Rice(Oryza Sativa) Rrp46
gi|284793944|pdb|3HKM|B Chain B, Crystal Structure Of
Rice(Oryza Sativa) Rrp46 gi|284793945|pdb|3HKM|C Chain
C, Crystal Structure Of Rice(Oryza Sativa) Rrp46
Length = 246
Score = 186 bits (471), Expect = 2e-44
Identities = 106/231 (45%), Positives = 136/231 (58%), Gaps = 1/231 (0%)
Frame = +3
Query: 48 ARADGRSANELRTLSCTXXXXXXXXXXXXWSQDGTIVLAAVYGPXXXXXXXXXXXXX-LE 224
+RADGR+ N+LR SCT W+Q TIVLAAVYGP +E
Sbjct: 4 SRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIE 63
Query: 225 VTWKPKTGLPGKPEKECEQILKRTLDFIFLSAMLPNSSIAVILQVVNDDGXXXXXXXXXX 404
V WKP TG GK EKE E LKRTL I L + PN++ +VILQVV +DG
Sbjct: 64 VVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAINAC 123
Query: 405 XXXXXXXGVPLKNTYAAICCGVRENGEVILDPSKTEEQELQAHVHLVFPTRPLTVLSENQ 584
G+PLK+ AI CGV E+GEVILD +K EEQ+L++ HLVFP + S+
Sbjct: 124 CAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSRKSASSKEP 183
Query: 585 ATKDNERIERGIITSVTRGAMSVESYLDCMERGGAAALKISEFVRSIIEKQ 737
K+ E ERG+ITS+T G MS E Y C+ERG AA+ +IS+F+R+ ++KQ
Sbjct: 184 NQKE-EDSERGLITSITHGVMSEEDYFSCIERGLAASSRISDFMRTTLQKQ 233
>ref|NP_001051936.1| Os03g0854200 [Oryza sativa Japonica Group]
gi|75243278|sp|Q84T68.2|EXOS5_ORYSJ RecName:
Full=Exosome complex exonuclease RRP46 homolog; AltName:
Full=Exosome component 5; AltName: Full=Ribosomal
RNA-processing protein 46; Short=oRrp46
gi|57222448|gb|AAO66540.2| putative exosome component
[Oryza sativa Japonica Group]
gi|108712165|gb|ABF99960.1| 3' exoribonuclease family,
domain 1 containing protein, expressed [Oryza sativa
Japonica Group] gi|113550407|dbj|BAF13850.1|
Os03g0854200 [Oryza sativa Japonica Group]
gi|215697262|dbj|BAG91256.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 238
Score = 186 bits (471), Expect = 2e-44
Identities = 106/231 (45%), Positives = 136/231 (58%), Gaps = 1/231 (0%)
Frame = +3
Query: 48 ARADGRSANELRTLSCTXXXXXXXXXXXXWSQDGTIVLAAVYGPXXXXXXXXXXXXX-LE 224
+RADGR+ N+LR SCT W+Q TIVLAAVYGP +E
Sbjct: 4 SRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIE 63
Query: 225 VTWKPKTGLPGKPEKECEQILKRTLDFIFLSAMLPNSSIAVILQVVNDDGXXXXXXXXXX 404
V WKP TG GK EKE E LKRTL I L + PN++ +VILQVV +DG
Sbjct: 64 VVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAINAC 123
Query: 405 XXXXXXXGVPLKNTYAAICCGVRENGEVILDPSKTEEQELQAHVHLVFPTRPLTVLSENQ 584
G+PLK+ AI CGV E+GEVILD +K EEQ+L++ HLVFP + S+
Sbjct: 124 CAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSRKSASSKEP 183
Query: 585 ATKDNERIERGIITSVTRGAMSVESYLDCMERGGAAALKISEFVRSIIEKQ 737
K+ E ERG+ITS+T G MS E Y C+ERG AA+ +IS+F+R+ ++KQ
Sbjct: 184 NQKE-EDSERGLITSITHGVMSEEDYFSCIERGLAASSRISDFMRTTLQKQ 233
>gb|EEC76561.1| hypothetical protein OsI_14380 [Oryza sativa Indica Group]
Length = 238
Score = 185 bits (469), Expect = 4e-44
Identities = 106/231 (45%), Positives = 135/231 (58%), Gaps = 1/231 (0%)
Frame = +3
Query: 48 ARADGRSANELRTLSCTXXXXXXXXXXXXWSQDGTIVLAAVYGPXXXXXXXXXXXXX-LE 224
+RADGR+ N+LR SCT W+Q TIVLAAVYGP +E
Sbjct: 4 SRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIE 63
Query: 225 VTWKPKTGLPGKPEKECEQILKRTLDFIFLSAMLPNSSIAVILQVVNDDGXXXXXXXXXX 404
V WKP TG GK EKE E LKRTL I L + PN++ +VILQVV +DG
Sbjct: 64 VVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAINAC 123
Query: 405 XXXXXXXGVPLKNTYAAICCGVRENGEVILDPSKTEEQELQAHVHLVFPTRPLTVLSENQ 584
G+PLK+ AI CGV E+GEVILD +K EEQ+L++ HLVFP + S+
Sbjct: 124 CAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSRKSASSKEP 183
Query: 585 ATKDNERIERGIITSVTRGAMSVESYLDCMERGGAAALKISEFVRSIIEKQ 737
K+ E ERG+ITS+T G MS E Y C+ERG AA+ +IS F+R+ ++KQ
Sbjct: 184 NQKE-EDSERGLITSITHGVMSEEDYFSCIERGLAASSRISHFMRTTLQKQ 233