BLASTX nr result
ID: Dioscorea21_contig00040003
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00040003
(302 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI23043.3| unnamed protein product [Vitis vinifera] 149 2e-34
ref|XP_002317794.1| predicted protein [Populus trichocarpa] gi|2... 139 3e-31
ref|XP_003588473.1| Pentatricopeptide repeat-containing protein ... 115 3e-24
ref|XP_004148310.1| PREDICTED: LOW QUALITY PROTEIN: putative pen... 99 5e-19
ref|XP_004159175.1| PREDICTED: putative pentatricopeptide repeat... 98 6e-19
>emb|CBI23043.3| unnamed protein product [Vitis vinifera]
Length = 539
Score = 149 bits (376), Expect = 2e-34
Identities = 72/100 (72%), Positives = 84/100 (84%)
Frame = -2
Query: 301 FAQSGYDEEALELLYRMVESDVKPNAQTLASILPVCARLEALELGKEIHGYVMRHGMISN 122
FAQ+GYD+EALELL RM + +PNA+TLAS+LP CARL+ L LGKEIHGYV RHG +SN
Sbjct: 21 FAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNLGKEIHGYVTRHGFMSN 80
Query: 121 PFAVNGLIDVYRRCNDMRSALEIFLRFSARNLVSYNTMIV 2
PF VNGL+DVYRRC DM SAL+IF FS +N+VSYNTMIV
Sbjct: 81 PFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIV 120
Score = 73.6 bits (179), Expect = 2e-11
Identities = 34/97 (35%), Positives = 58/97 (59%)
Frame = -2
Query: 295 QSGYDEEALELLYRMVESDVKPNAQTLASILPVCARLEALELGKEIHGYVMRHGMISNPF 116
++G++E AL L M S ++P+ T+ ILP CARL + GK++H + +R G +
Sbjct: 227 ENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVH 286
Query: 115 AVNGLIDVYRRCNDMRSALEIFLRFSARNLVSYNTMI 5
L+D+Y +C ++ A++++ R S NLVS N M+
Sbjct: 287 IGAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAML 323
>ref|XP_002317794.1| predicted protein [Populus trichocarpa] gi|222858467|gb|EEE96014.1|
predicted protein [Populus trichocarpa]
Length = 852
Score = 139 bits (349), Expect = 3e-31
Identities = 63/100 (63%), Positives = 80/100 (80%)
Frame = -2
Query: 301 FAQSGYDEEALELLYRMVESDVKPNAQTLASILPVCARLEALELGKEIHGYVMRHGMISN 122
FAQ+GYDEEA+E+L+RM + PNAQTLA +LP CARL+ L+LGK++HGY+ RH ISN
Sbjct: 272 FAQNGYDEEAIEMLFRMQVEGLVPNAQTLAGVLPACARLQRLDLGKQLHGYITRHDFISN 331
Query: 121 PFAVNGLIDVYRRCNDMRSALEIFLRFSARNLVSYNTMIV 2
P VN L+DVYRRC DM A +IFL+FS +N++S NTMIV
Sbjct: 332 PVVVNALVDVYRRCGDMGGAAKIFLKFSVKNVLSCNTMIV 371
Score = 60.5 bits (145), Expect = 1e-07
Identities = 30/89 (33%), Positives = 51/89 (57%)
Frame = -2
Query: 271 LELLYRMVESDVKPNAQTLASILPVCARLEALELGKEIHGYVMRHGMISNPFAVNGLIDV 92
++L M S ++P+ T+ ILP C+RL LE GK+ H + ++ G ++ L+D+
Sbjct: 555 MQLFSEMQISKLRPDIYTVGIILPACSRLATLERGKQAHAHSIKCGYDTDVHIGAALVDM 614
Query: 91 YRRCNDMRSALEIFLRFSARNLVSYNTMI 5
Y +C ++ A + R S NLVS+N M+
Sbjct: 615 YAKCGSLKYAQLAYDRISNPNLVSHNAML 643
Score = 56.6 bits (135), Expect = 2e-06
Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Frame = -2
Query: 280 EEALELLYRMV-ESDVKPNAQTLASILPVCARLEALELGKEIHGYVMRHGMISNPFAVNG 104
+EA + M+ E ++P++ TL S+L CA +L GKEIH + G+ S+ F
Sbjct: 415 DEAFSMFQNMLMEEGIEPDSFTLGSVLTACADTISLRQGKEIHAQAIVKGLQSDTFVGGA 474
Query: 103 LIDVYRRCNDMRSALEIFLRFSARNLVSYNTMI 5
L+++Y +C D+ +A F +++ ++N +I
Sbjct: 475 LVEMYSKCQDLTAAQVAFDEVMEKDVPTWNALI 507
>ref|XP_003588473.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477521|gb|AES58724.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 827
Score = 115 bits (289), Expect = 3e-24
Identities = 52/100 (52%), Positives = 75/100 (75%)
Frame = -2
Query: 301 FAQSGYDEEALELLYRMVESDVKPNAQTLASILPVCARLEALELGKEIHGYVMRHGMISN 122
F+ + YD E++EL RMV + V P+A+TLAS+LP C+R++ L +GKE+HGY++RH + SN
Sbjct: 245 FSSNAYDVESVELFARMVGAGVAPDARTLASVLPACSRMKWLFVGKELHGYIVRHELFSN 304
Query: 121 PFAVNGLIDVYRRCNDMRSALEIFLRFSARNLVSYNTMIV 2
F N L+ +YRRC DM+SA +IF +F+ + SYNTMIV
Sbjct: 305 GFVANALVGMYRRCGDMKSAFKIFSKFARKCAASYNTMIV 344
Score = 61.2 bits (147), Expect = 8e-08
Identities = 27/90 (30%), Positives = 51/90 (56%)
Frame = -2
Query: 274 ALELLYRMVESDVKPNAQTLASILPVCARLEALELGKEIHGYVMRHGMISNPFAVNGLID 95
A++L M S ++P+ T+ IL C++L + GK++H Y +R G S+ L+D
Sbjct: 526 AMQLFNEMQVSSLRPDIYTVGIILAACSKLATIHRGKQVHAYSIRAGYDSDAHIGATLVD 585
Query: 94 VYRRCNDMRSALEIFLRFSARNLVSYNTMI 5
+Y +C ++ +++ + S NLV +N M+
Sbjct: 586 MYAKCGSIKHCYQVYNKISNPNLVCHNAML 615
Score = 60.8 bits (146), Expect = 1e-07
Identities = 24/68 (35%), Positives = 45/68 (66%)
Frame = -2
Query: 208 ILPVCARLEALELGKEIHGYVMRHGMISNPFAVNGLIDVYRRCNDMRSALEIFLRFSARN 29
+L +C L LELG+++HG V++HG ++N + N LID+Y +C + A ++ + ++
Sbjct: 140 VLNICCGLGDLELGRQVHGMVLKHGFVTNVYVGNALIDMYGKCGSLDEAKKVLEGMTQKD 199
Query: 28 LVSYNTMI 5
VS+N++I
Sbjct: 200 CVSWNSII 207
Score = 57.4 bits (137), Expect = 1e-06
Identities = 30/92 (32%), Positives = 52/92 (56%)
Frame = -2
Query: 280 EEALELLYRMVESDVKPNAQTLASILPVCARLEALELGKEIHGYVMRHGMISNPFAVNGL 101
++AL L ++ ++P++ TL SIL A + + GKEIH + G+ SN F L
Sbjct: 388 DDALMLFRDLLMEGIEPDSFTLGSILTGFADMTCIRQGKEIHSIAIVKGLQSNSFVGGAL 447
Query: 100 IDVYRRCNDMRSALEIFLRFSARNLVSYNTMI 5
+++Y +CND+ +A F S R+ ++N +I
Sbjct: 448 VEMYCKCNDIIAAQMAFDEISERDTSTWNALI 479
>ref|XP_004148310.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g18840-like [Cucumis
sativus]
Length = 1096
Score = 98.6 bits (244), Expect = 5e-19
Identities = 45/100 (45%), Positives = 68/100 (68%)
Frame = -2
Query: 301 FAQSGYDEEALELLYRMVESDVKPNAQTLASILPVCARLEALELGKEIHGYVMRHGMISN 122
F Q+GY+EE+L+L RM + V N T AS+L C+ L +L+LGKE+H YV+++ +I+N
Sbjct: 655 FVQNGYEEESLKLFVRMADEKVGWNEHTFASVLSACSNLRSLKLGKEVHAYVLKNRLIAN 714
Query: 121 PFAVNGLIDVYRRCNDMRSALEIFLRFSARNLVSYNTMIV 2
PF +GL+DVY +CN+MR A + +N+ S +MIV
Sbjct: 715 PFICSGLVDVYCKCNNMRYAKSVNSELRMQNVYSITSMIV 754
>ref|XP_004159175.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g18840-like [Cucumis sativus]
Length = 1096
Score = 98.2 bits (243), Expect = 6e-19
Identities = 45/100 (45%), Positives = 68/100 (68%)
Frame = -2
Query: 301 FAQSGYDEEALELLYRMVESDVKPNAQTLASILPVCARLEALELGKEIHGYVMRHGMISN 122
F Q+GY+EE+L+L RM + V N T AS+L C+ L +L+LGKE+H YV+++ +I+N
Sbjct: 655 FVQNGYEEESLKLFVRMADEKVGWNEHTFASVLSACSNLRSLKLGKEVHAYVLKNRLIAN 714
Query: 121 PFAVNGLIDVYRRCNDMRSALEIFLRFSARNLVSYNTMIV 2
PF +GL+DVY +CN+MR A + +N+ S +MIV
Sbjct: 715 PFICSGLVDVYCKCNNMRYAESVNSELRMQNVYSITSMIV 754