BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00038849
         (289 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002528772.1| pentatricopeptide repeat-containing protein,...   122   3e-26
ref|XP_003611431.1| Pentatricopeptide repeat-containing protein ...   119   2e-25
ref|XP_002269187.1| PREDICTED: pentatricopeptide repeat-containi...   114   6e-24
ref|XP_002329533.1| predicted protein [Populus trichocarpa] gi|2...   108   4e-22
ref|XP_002890989.1| predicted protein [Arabidopsis lyrata subsp....   103   1e-20

>ref|XP_002528772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223531775|gb|EEF33594.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 676

 Score =  122 bits (306), Expect = 3e-26
 Identities = 59/95 (62%), Positives = 73/95 (76%)
 Frame = +2

Query: 5   DARRLFDQMPDHHRDVVSWTVLIAGYCRAGDVSEAYDLFSIMTPNRNVVTWTAMIGGLVW 184
           +AR LFD+M D  R+V++WT +++GYCRAG+V E Y LF  M P RN+V+WTAMIGG  W
Sbjct: 152 EARALFDEMED--RNVITWTSMVSGYCRAGEVEEGYHLFRTM-PKRNIVSWTAMIGGFTW 208

Query: 185 NGFYEDALLLFKKMMNRTADVKPNKETILSLIYAC 289
           NGFYEDALLLF + M R AD+ PN ET +SL YAC
Sbjct: 209 NGFYEDALLLFLE-MKRGADITPNIETFISLAYAC 242



 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 35/72 (48%), Positives = 50/72 (69%)
 Frame = +2

Query: 2   ADARRLFDQMPDHHRDVVSWTVLIAGYCRAGDVSEAYDLFSIMTPNRNVVTWTAMIGGLV 181
           ++A +LF++MP+  R+VVSWT ++ G   AG + EA  LF  M P+RNVV+W AMI GL+
Sbjct: 58  SEAMKLFEEMPE--RNVVSWTSMLCGLADAGKICEAKSLFEEM-PDRNVVSWNAMIVGLI 114

Query: 182 WNGFYEDALLLF 217
            NG  E A ++F
Sbjct: 115 RNGDLEAARMVF 126



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 40/93 (43%), Positives = 52/93 (55%)
 Frame = +2

Query: 8   ARRLFDQMPDHHRDVVSWTVLIAGYCRAGDVSEAYDLFSIMTPNRNVVTWTAMIGGLVWN 187
           A+ LFD MP   RD ++WT +I GY   G+VSEA  LF  M P ++ V WT MI G V N
Sbjct: 321 AQNLFDTMPV--RDKITWTSMIDGYLVIGNVSEACSLFLYM-PEKDAVAWTTMISGHVRN 377

Query: 188 GFYEDALLLFKKMMNRTADVKPNKETILSLIYA 286
             + +A  LF +M+  T  V+P   T   L  A
Sbjct: 378 ELFAEATYLFSEML--TQGVRPLSSTYAILFGA 408



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 35/77 (45%), Positives = 50/77 (64%)
 Frame = +2

Query: 5   DARRLFDQMPDHHRDVVSWTVLIAGYCRAGDVSEAYDLFSIMTPNRNVVTWTAMIGGLVW 184
           +AR LFD MP+  R+ VS+  L++G  + G +SEA  LF  M P RNVV+WT+M+ GL  
Sbjct: 28  EARALFDIMPE--RNAVSYNALLSGLLQCGRLSEAMKLFEEM-PERNVVSWTSMLCGLAD 84

Query: 185 NGFYEDALLLFKKMMNR 235
            G   +A  LF++M +R
Sbjct: 85  AGKICEAKSLFEEMPDR 101


>ref|XP_003611431.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355512766|gb|AES94389.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 735

 Score =  119 bits (299), Expect = 2e-25
 Identities = 58/95 (61%), Positives = 74/95 (77%)
 Frame = +2

Query: 5   DARRLFDQMPDHHRDVVSWTVLIAGYCRAGDVSEAYDLFSIMTPNRNVVTWTAMIGGLVW 184
           DA+ LFDQ+    R+V++WT +I+GYCR GDV+EA+ LF IM P +NVV+WTAMIGG  W
Sbjct: 214 DAKDLFDQI--ECRNVITWTSMISGYCRVGDVNEAFRLFQIM-PEKNVVSWTAMIGGFAW 270

Query: 185 NGFYEDALLLFKKMMNRTADVKPNKETILSLIYAC 289
           NGFY +ALLLF  MM   +D KPN+ET +SL+YAC
Sbjct: 271 NGFYREALLLFLDMMT-LSDAKPNEETFVSLVYAC 304



 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 36/74 (48%), Positives = 51/74 (68%)
 Frame = +2

Query: 5   DARRLFDQMPDHHRDVVSWTVLIAGYCRAGDVSEAYDLFSIMTPNRNVVTWTAMIGGLVW 184
           DAR++FD+MP+  R+VVSW  ++ G  R GD+ EA  +F   TP++NVV+W AMI G V 
Sbjct: 152 DARKVFDEMPE--RNVVSWNSMVVGLIRNGDLEEARKVFDD-TPDKNVVSWNAMIEGYVE 208

Query: 185 NGFYEDALLLFKKM 226
           NG  +DA  LF ++
Sbjct: 209 NGRMDDAKDLFDQI 222



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 32/70 (45%), Positives = 47/70 (67%)
 Frame = +2

Query: 8   ARRLFDQMPDHHRDVVSWTVLIAGYCRAGDVSEAYDLFSIMTPNRNVVTWTAMIGGLVWN 187
           A+R FD MP+  R+VVSWT +++GY   G + +A  +F  M P RNVV+W +M+ GL+ N
Sbjct: 122 AKRFFDDMPE--RNVVSWTAMLSGYAGLGWIDDARKVFDEM-PERNVVSWNSMVVGLIRN 178

Query: 188 GFYEDALLLF 217
           G  E+A  +F
Sbjct: 179 GDLEEARKVF 188



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 31/76 (40%), Positives = 47/76 (61%)
 Frame = +2

Query: 8   ARRLFDQMPDHHRDVVSWTVLIAGYCRAGDVSEAYDLFSIMTPNRNVVTWTAMIGGLVWN 187
           AR LFD MP  HR++V++  +++ Y ++G   +A   F  M P RNVV+WTAM+ G    
Sbjct: 91  ARNLFDIMP--HRNIVTYNAMLSAYLQSGMTRQAKRFFDDM-PERNVVSWTAMLSGYAGL 147

Query: 188 GFYEDALLLFKKMMNR 235
           G+ +DA  +F +M  R
Sbjct: 148 GWIDDARKVFDEMPER 163


>ref|XP_002269187.1| PREDICTED: pentatricopeptide repeat-containing protein At1g32415,
           mitochondrial-like [Vitis vinifera]
          Length = 743

 Score =  114 bits (286), Expect = 6e-24
 Identities = 59/95 (62%), Positives = 71/95 (74%)
 Frame = +2

Query: 5   DARRLFDQMPDHHRDVVSWTVLIAGYCRAGDVSEAYDLFSIMTPNRNVVTWTAMIGGLVW 184
           +AR LFD M D  R+VV+WT +I+GYCRAG+V E Y LF  M P RNVV+WTAMIGG  W
Sbjct: 218 EARVLFDGMGD--RNVVTWTSMISGYCRAGNVQEGYCLFQKM-PERNVVSWTAMIGGFAW 274

Query: 185 NGFYEDALLLFKKMMNRTADVKPNKETILSLIYAC 289
           NGFY++ALLLF +M     D+KPN ET +SL YAC
Sbjct: 275 NGFYKEALLLFLEMKG-NYDMKPNDETFISLAYAC 308



 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 35/75 (46%), Positives = 53/75 (70%)
 Frame = +2

Query: 2   ADARRLFDQMPDHHRDVVSWTVLIAGYCRAGDVSEAYDLFSIMTPNRNVVTWTAMIGGLV 181
           +DA R F++MP+  R+VVSWT L+ G   AG + EA +LF++M P RNVV+W +M+ GL+
Sbjct: 124 SDACRFFEEMPE--RNVVSWTSLLCGLANAGRIGEARELFNVM-PERNVVSWNSMLVGLI 180

Query: 182 WNGFYEDALLLFKKM 226
            +G  E+A  +F +M
Sbjct: 181 RSGQLEEARRVFNEM 195



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 37/93 (39%), Positives = 52/93 (55%)
 Frame = +2

Query: 8   ARRLFDQMPDHHRDVVSWTVLIAGYCRAGDVSEAYDLFSIMTPNRNVVTWTAMIGGLVWN 187
           A+ LFD +P   RD +SWT +I GY   G +++A  LF+ M P+R+ V WT M+ G V N
Sbjct: 387 AQSLFDTIPV--RDKISWTSMINGYFNVGQIAKACYLFNNM-PDRDAVAWTVMVSGHVQN 443

Query: 188 GFYEDALLLFKKMMNRTADVKPNKETILSLIYA 286
             + +A  LF +M  R   V P   T   L+ A
Sbjct: 444 ELFAEATYLFSEM--RVKGVSPLNSTFSILLGA 474



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
 Frame = +2

Query: 5   DARRLFDQMPDHH--RDVVSWTVLIAGYCRAGDVSEAYDLFSIMTPNRNVVTWTAMIGGL 178
           +AR + D+MP+      VV WT L++ + + G + EA  LF IM P RNVVT+ AM+ G 
Sbjct: 59  EARHMLDEMPNRGVLDRVVCWTSLLSKFSKNGFIDEARALFEIM-PERNVVTYNAMLSGY 117

Query: 179 VWNGFYEDALLLFKKMMNR 235
           V  G   DA   F++M  R
Sbjct: 118 VQCGRLSDACRFFEEMPER 136


>ref|XP_002329533.1| predicted protein [Populus trichocarpa] gi|222870242|gb|EEF07373.1|
           predicted protein [Populus trichocarpa]
          Length = 693

 Score =  108 bits (271), Expect = 4e-22
 Identities = 54/95 (56%), Positives = 70/95 (73%)
 Frame = +2

Query: 5   DARRLFDQMPDHHRDVVSWTVLIAGYCRAGDVSEAYDLFSIMTPNRNVVTWTAMIGGLVW 184
           +AR LF++M D  R+V++WT +IAGYCR GDV EAY  F  + P RNVV+WTAMI G  W
Sbjct: 175 EARVLFEEMED--RNVITWTTMIAGYCRIGDVREAYCFFCRI-PERNVVSWTAMISGFTW 231

Query: 185 NGFYEDALLLFKKMMNRTADVKPNKETILSLIYAC 289
           NG+Y +ALLLF + M R +++ PN ET +SL YAC
Sbjct: 232 NGYYGEALLLFLE-MKRRSNIAPNGETFISLAYAC 265



 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 34/77 (44%), Positives = 51/77 (66%)
 Frame = +2

Query: 5   DARRLFDQMPDHHRDVVSWTVLIAGYCRAGDVSEAYDLFSIMTPNRNVVTWTAMIGGLVW 184
           +AR LF +MP+  R+VVSW  ++AG  +  D+ EA  +F  + P +NVV+W AMI G   
Sbjct: 113 EARELFKEMPE--RNVVSWNAMVAGLIKNEDLEEARRVFDEI-PEKNVVSWNAMIKGFAE 169

Query: 185 NGFYEDALLLFKKMMNR 235
           NG  E+A +LF++M +R
Sbjct: 170 NGKMEEARVLFEEMEDR 186



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 36/77 (46%), Positives = 52/77 (67%)
 Frame = +2

Query: 5   DARRLFDQMPDHHRDVVSWTVLIAGYCRAGDVSEAYDLFSIMTPNRNVVTWTAMIGGLVW 184
           ++R LFD MP+  R++VS+ V+++GY + G +SEA  LF  M P RNVV+WT+M+ GL  
Sbjct: 51  ESRVLFDIMPE--RNIVSYNVMLSGYLQCGRLSEARGLFEEM-PERNVVSWTSMLCGLAD 107

Query: 185 NGFYEDALLLFKKMMNR 235
            G   +A  LFK+M  R
Sbjct: 108 AGRICEARELFKEMPER 124



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 33/74 (44%), Positives = 45/74 (60%)
 Frame = +2

Query: 8   ARRLFDQMPDHHRDVVSWTVLIAGYCRAGDVSEAYDLFSIMTPNRNVVTWTAMIGGLVWN 187
           AR LFD +P   RD ++WT +I GY   G+VSEA  LF  M P+++ V WT+MI GLV N
Sbjct: 344 ARELFDTIPA--RDNITWTSMIVGYFDIGNVSEACYLFENM-PDKDSVAWTSMISGLVQN 400

Query: 188 GFYEDALLLFKKMM 229
             +  A     +M+
Sbjct: 401 ELFLKATSFLLRML 414


>ref|XP_002890989.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297336831|gb|EFH67248.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 792

 Score =  103 bits (257), Expect = 1e-20
 Identities = 50/95 (52%), Positives = 66/95 (69%)
 Frame = +2

Query: 5   DARRLFDQMPDHHRDVVSWTVLIAGYCRAGDVSEAYDLFSIMTPNRNVVTWTAMIGGLVW 184
           +A+ LF+ M +  ++VV+WT ++ GYCR GDV EAY LF  M P RNVV+WTAMI G  W
Sbjct: 248 EAKLLFENMSE--KNVVTWTSMVYGYCRYGDVHEAYRLFCEM-PERNVVSWTAMISGFAW 304

Query: 185 NGFYEDALLLFKKMMNRTADVKPNKETILSLIYAC 289
           N FY +AL+LF +M      + PN ET++SL YAC
Sbjct: 305 NEFYREALMLFLEMKKDVDAISPNGETLISLAYAC 339



 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 39/93 (41%), Positives = 55/93 (59%)
 Frame = +2

Query: 5   DARRLFDQMPDHHRDVVSWTVLIAGYCRAGDVSEAYDLFSIMTPNRNVVTWTAMIGGLVW 184
           DA  LFD+MP+  R+VVSW  L+ G  R G+  +A  +F  M P+R+ V+W AMI G + 
Sbjct: 186 DAVELFDEMPE--RNVVSWNTLVTGLIRNGETEKAKQVFDAM-PSRDAVSWNAMIKGYIE 242

Query: 185 NGFYEDALLLFKKMMNRTADVKPNKETILSLIY 283
           NG  E+A LLF+ M  +      N  T  S++Y
Sbjct: 243 NGGMEEAKLLFENMSEK------NVVTWTSMVY 269



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 38/91 (41%), Positives = 51/91 (56%)
 Frame = +2

Query: 8   ARRLFDQMPDHHRDVVSWTVLIAGYCRAGDVSEAYDLFSIMTPNRNVVTWTAMIGGLVWN 187
           A  LF ++   H D VSWT +I GY  AGDVS A+DLF  +  +++ VTWT MI GLV N
Sbjct: 417 AETLFRRVESLH-DKVSWTSMIDGYLDAGDVSRAFDLFQKL-HDKDGVTWTVMISGLVQN 474

Query: 188 GFYEDALLLFKKMMNRTADVKPNKETILSLI 280
             + +A  L   M+     +KP   T   L+
Sbjct: 475 ELFAEAASLLSDMVR--CGLKPLNSTYSVLL 503



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 33/79 (41%), Positives = 47/79 (59%)
 Frame = +2

Query: 5   DARRLFDQMPDHHRDVVSWTVLIAGYCRAGDVSEAYDLFSIMTPNRNVVTWTAMIGGLVW 184
           +A  LF +MP   ++VVSWTV++   C  G   +A +LF  M P RNVV+W  ++ GL+ 
Sbjct: 156 EAWTLFREMP---KNVVSWTVMLTALCDDGRSDDAVELFDEM-PERNVVSWNTLVTGLIR 211

Query: 185 NGFYEDALLLFKKMMNRTA 241
           NG  E A  +F  M +R A
Sbjct: 212 NGETEKAKQVFDAMPSRDA 230



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 28/81 (34%), Positives = 52/81 (64%)
 Frame = +2

Query: 47  DVVSWTVLIAGYCRAGDVSEAYDLFSIMTPNRNVVTWTAMIGGLVWNGFYEDALLLFKKM 226
           D++    L++ Y + G + +AY++FS M   +++V+W ++I GL  +G  + AL LFK+M
Sbjct: 532 DLILQNSLVSMYAKCGAIDDAYEIFSKMV-RKDIVSWNSVIIGLSHHGLADKALKLFKEM 590

Query: 227 MNRTADVKPNKETILSLIYAC 289
           ++  + +KPN  T L ++ AC
Sbjct: 591 LD--SGMKPNSVTFLGVLSAC 609