BLASTX nr result

ID: Dioscorea21_contig00038735 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00038735
         (287 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002326134.1| predicted protein [Populus trichocarpa] gi|2...    59   4e-07
gb|ACM89458.1| jasmonate ZIM domain 2 [Catharanthus roseus]            58   9e-07
gb|ABK96213.1| unknown [Populus trichocarpa x Populus deltoides]       58   9e-07
ref|XP_002461012.1| hypothetical protein SORBIDRAFT_02g039190 [S...    55   5e-06
gb|ABR26007.1| pnfl-2 [Oryza sativa Indica Group]                      55   6e-06

>ref|XP_002326134.1| predicted protein [Populus trichocarpa] gi|222833327|gb|EEE71804.1|
           predicted protein [Populus trichocarpa]
          Length = 274

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 11/102 (10%)
 Frame = +3

Query: 3   RTGFAPSEEA-----TGKTAGEVQGKSQLTIFYGGKVLVFDDFSEDKAREIVNFASRACE 167
           + GFAP E+      + K+A      +Q+TIFY G+V+VF+DF  DKA+E++  AS+   
Sbjct: 100 QAGFAPKEDVPMKLDSSKSATAEPQTAQMTIFYAGRVIVFNDFPADKAKEVMLLASKGSS 159

Query: 168 SLLKQSVVPPLSPVDHPSDASQ------QNTASFPSTSASCP 275
            +  Q+  P +    HP+ A        ++T S PS+S + P
Sbjct: 160 QI--QNAFPSIPANSHPALAPNISKTPIESTISIPSSSNALP 199


>gb|ACM89458.1| jasmonate ZIM domain 2 [Catharanthus roseus]
          Length = 243

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 34/84 (40%), Positives = 43/84 (51%)
 Frame = +3

Query: 27  EATGKTAGEVQGKSQLTIFYGGKVLVFDDFSEDKAREIVNFASRACESLLKQSVVPPLSP 206
           E     A E   +SQ+TIFYGG+VLVFDD   DKARE++  AS    S+   S +     
Sbjct: 86  ELDAAAAAEEIKRSQMTIFYGGEVLVFDDLPADKAREVMQLASNGTSSIGSNSALTKAEK 145

Query: 207 VDHPSDASQQNTASFPSTSASCPP 278
              P        AS PS+S + PP
Sbjct: 146 HHSPD-------ASLPSSSKAPPP 162


>gb|ABK96213.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 273

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 11/102 (10%)
 Frame = +3

Query: 3   RTGFAPSEEA-----TGKTAGEVQGKSQLTIFYGGKVLVFDDFSEDKAREIVNFASRACE 167
           + GFAP E+      + K+A      +Q+TIFY G+V+VF+DF  DKA+E++  AS+   
Sbjct: 99  QAGFAPKEDVPMKLDSSKSATAEPQTAQMTIFYAGRVIVFNDFPADKAKEVMLLASKGSS 158

Query: 168 SLLKQSVVPPLSPVDHPSDASQ------QNTASFPSTSASCP 275
            +  Q+  P +    HP+ A        ++T + PS+S + P
Sbjct: 159 QI--QNAFPSIPANSHPALAPNISKTPIESTITIPSSSNALP 198


>ref|XP_002461012.1| hypothetical protein SORBIDRAFT_02g039190 [Sorghum bicolor]
           gi|241924389|gb|EER97533.1| hypothetical protein
           SORBIDRAFT_02g039190 [Sorghum bicolor]
          Length = 235

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 30/63 (47%), Positives = 39/63 (61%)
 Frame = +3

Query: 9   GFAPSEEATGKTAGEVQGKSQLTIFYGGKVLVFDDFSEDKAREIVNFASRACESLLKQSV 188
           GF   + A        +   QLTIFYGGKVLVFDDF  DKA++++  AS+   SL+ Q+V
Sbjct: 78  GFGVKDAAAPSEQENKEKPKQLTIFYGGKVLVFDDFPADKAKDLMQLASKG--SLVVQNV 135

Query: 189 VPP 197
           V P
Sbjct: 136 VLP 138


>gb|ABR26007.1| pnfl-2 [Oryza sativa Indica Group]
          Length = 165

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
 Frame = +3

Query: 6   TGFAPSEEATGKTA-GEVQGKSQLTIFYGGKVLVFDDFSEDKAREIVNFASRACESLLKQ 182
           +GF     A  +T     Q K QLTIFYGGKVLVFDDF  +KA++++  AS++  S  + 
Sbjct: 59  SGFGSEAAAVKETPDAREQEKRQLTIFYGGKVLVFDDFPAEKAKDLMQMASKS-SSTAQN 117

Query: 183 SVVPPLSPVDHPSDASQQNTASFPSTSASCPPVA 284
            V+ P S     +D ++ +    P   AS  PVA
Sbjct: 118 CVLLPSSATATVADNTKVSAVPAP---ASALPVA 148


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