BLASTX nr result
ID: Dioscorea21_contig00038278
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00038278
(305 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containi... 121 5e-26
emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera] 121 5e-26
ref|XP_002320601.1| predicted protein [Populus trichocarpa] gi|2... 120 9e-26
ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containi... 120 1e-25
ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containi... 120 1e-25
>ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Vitis vinifera]
Length = 631
Score = 121 bits (304), Expect = 5e-26
Identities = 55/101 (54%), Positives = 77/101 (76%)
Frame = +1
Query: 1 LGSALVDMYSKCGNVDKALELFKGLPKSNPITWSALIGGLALHGRGKEAIDYFSMMEHAG 180
LGSAL+DMY+KCG+++KAL++F+GLPK N +TWS +I GLA+HGR K+ +D+F ME AG
Sbjct: 296 LGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAG 355
Query: 181 LTPSALVFIALLNACCVAGMVDLGWAYFECMTTVYGLNPDI 303
+ PS + +I LL+AC AG+V+ G +F+ M V GL P I
Sbjct: 356 VMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRI 396
Score = 55.8 bits (133), Expect = 3e-06
Identities = 27/99 (27%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Frame = +1
Query: 1 LGSALVDMYSKCGNVDKALELFKGLPKSNPITWSALIGGLALHGRGKEAIDYFSMMEHAG 180
L + ++D Y + G ++ A LF +P+ + ++W+ +I G A G KEA++ F M+ A
Sbjct: 195 LWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAE 254
Query: 181 LTPSALVFIALLNACCVAGMVDLG-WAYFECMTTVYGLN 294
+ P+ + +++L A G ++LG W + + G++
Sbjct: 255 VPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVD 293
>emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
Length = 613
Score = 121 bits (304), Expect = 5e-26
Identities = 55/101 (54%), Positives = 77/101 (76%)
Frame = +1
Query: 1 LGSALVDMYSKCGNVDKALELFKGLPKSNPITWSALIGGLALHGRGKEAIDYFSMMEHAG 180
LGSAL+DMY+KCG+++KAL++F+GLPK N +TWS +I GLA+HGR K+ +D+F ME AG
Sbjct: 273 LGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAG 332
Query: 181 LTPSALVFIALLNACCVAGMVDLGWAYFECMTTVYGLNPDI 303
+ PS + +I LL+AC AG+V+ G +F+ M V GL P I
Sbjct: 333 VMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRI 373
Score = 55.8 bits (133), Expect = 3e-06
Identities = 27/99 (27%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Frame = +1
Query: 1 LGSALVDMYSKCGNVDKALELFKGLPKSNPITWSALIGGLALHGRGKEAIDYFSMMEHAG 180
L + ++D Y + G ++ A LF +P+ + ++W+ +I G A G KEA++ F M+ A
Sbjct: 172 LWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAE 231
Query: 181 LTPSALVFIALLNACCVAGMVDLG-WAYFECMTTVYGLN 294
+ P+ + +++L A G ++LG W + + G++
Sbjct: 232 VPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVD 270
>ref|XP_002320601.1| predicted protein [Populus trichocarpa] gi|222861374|gb|EEE98916.1|
predicted protein [Populus trichocarpa]
Length = 629
Score = 120 bits (302), Expect = 9e-26
Identities = 56/102 (54%), Positives = 81/102 (79%), Gaps = 1/102 (0%)
Frame = +1
Query: 1 LGSALVDMYSKCGNVDKALELFKGLP-KSNPITWSALIGGLALHGRGKEAIDYFSMMEHA 177
LGSAL+DMYSKCG++DKA+++F+G+ K NPITWSA+IGGLA+HGR ++A+D+F M+ A
Sbjct: 293 LGSALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQA 352
Query: 178 GLTPSALVFIALLNACCVAGMVDLGWAYFECMTTVYGLNPDI 303
G+TPS +V+I +L+AC AG+V+ G + + M + GL P I
Sbjct: 353 GVTPSDVVYIGVLSACSHAGLVEEGRSIYYHMVNIVGLLPRI 394
Score = 55.8 bits (133), Expect = 3e-06
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Frame = +1
Query: 1 LGSALVDMYSKCGNVDKALELFKGLPKSNPITWSALIGGLALHGRGKEAIDYFSMMEHAG 180
L + ++D Y + G++ + ELF +P + ++W+ +I G A +G KEAI+ F M+
Sbjct: 192 LWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGD 251
Query: 181 LTPSALVFIALLNACCVAGMVDLG-WAY 261
+ P+ + +++L A G ++LG W +
Sbjct: 252 VPPNYVTLVSVLPAVSRLGAIELGKWVH 279
>ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 120 bits (300), Expect = 1e-25
Identities = 56/101 (55%), Positives = 77/101 (76%)
Frame = +1
Query: 1 LGSALVDMYSKCGNVDKALELFKGLPKSNPITWSALIGGLALHGRGKEAIDYFSMMEHAG 180
LGSALVDMYSKCG++DKAL++F+ LPK N ITWSA+IG A+HGR ++AI +F +M AG
Sbjct: 307 LGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAG 366
Query: 181 LTPSALVFIALLNACCVAGMVDLGWAYFECMTTVYGLNPDI 303
+TP+ + +I +L+AC AG+V+ G ++F M V GL P I
Sbjct: 367 VTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRI 407
>ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
[Vitis vinifera]
Length = 576
Score = 120 bits (300), Expect = 1e-25
Identities = 51/101 (50%), Positives = 76/101 (75%)
Frame = +1
Query: 1 LGSALVDMYSKCGNVDKALELFKGLPKSNPITWSALIGGLALHGRGKEAIDYFSMMEHAG 180
L +AL+DMY+KCG ++KALE+FK + + ITW+++I GLALHG G+EA++ FS ME
Sbjct: 308 LNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNR 367
Query: 181 LTPSALVFIALLNACCVAGMVDLGWAYFECMTTVYGLNPDI 303
+ P+ + F+A+L+ACC G+V++G YF+CM T YG+ P I
Sbjct: 368 IKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKI 408
Score = 63.5 bits (153), Expect = 2e-08
Identities = 32/82 (39%), Positives = 49/82 (59%)
Frame = +1
Query: 7 SALVDMYSKCGNVDKALELFKGLPKSNPITWSALIGGLALHGRGKEAIDYFSMMEHAGLT 186
+A+V Y+K G+VD A LF+ +P+ N I+W+A+I G A R EAI F M+ +
Sbjct: 209 NAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVE 268
Query: 187 PSALVFIALLNACCVAGMVDLG 252
P + +A L+AC G ++LG
Sbjct: 269 PDEIAMLAALSACAHLGALELG 290