BLASTX nr result
ID: Dioscorea21_contig00038194
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00038194
(328 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containi... 106 4e-23
ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containi... 104 7e-23
emb|CBI28351.3| unnamed protein product [Vitis vinifera] 101 8e-22
gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indi... 99 2e-21
ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group] g... 99 2e-21
>ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Brachypodium distachyon]
Length = 874
Score = 106 bits (265), Expect(2) = 4e-23
Identities = 50/92 (54%), Positives = 68/92 (73%)
Frame = +2
Query: 53 VENLILSQQLHCCVVKGGLALDVNILTALMVVYSKCGKMDDAFELFYAMSGARNVVSWTA 232
++ L L++QLH CV+K G D N++TA+M YSKCG++DDAF +F M G++NVVSWTA
Sbjct: 315 LKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTA 374
Query: 233 MICAFIQNGDLHRASVLFSQMMGGDVRPNEFT 328
MI IQN D+ A+ LFS+M +V+PNEFT
Sbjct: 375 MIGGCIQNADIPLAAALFSRMREDNVKPNEFT 406
Score = 26.2 bits (56), Expect(2) = 4e-23
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 6 KPTQLTFVTVIKLCAKLK 59
K +Q T+ TVIKLCA LK
Sbjct: 299 KLSQSTYSTVIKLCANLK 316
Score = 59.7 bits (143), Expect = 2e-07
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Frame = +2
Query: 53 VENLILSQQLHCCVVKGGL-ALDVNILTALMVVYSKCGKMDDAFELFYAMSGARNVVSWT 229
+ + + +QLHC VK G +V + TAL+ +Y KCG ++D +F M RNVV+WT
Sbjct: 112 IPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMP-KRNVVTWT 170
Query: 230 AMICAFIQNGDLHRASVLFSQMMGGDVRPNEFT 328
+++ ++Q LF +M V PN FT
Sbjct: 171 SLLTGYVQGRACSDVMALFFRMRAEGVWPNPFT 203
Score = 57.4 bits (137), Expect = 1e-06
Identities = 31/88 (35%), Positives = 51/88 (57%)
Frame = +2
Query: 65 ILSQQLHCCVVKGGLALDVNILTALMVVYSKCGKMDDAFELFYAMSGARNVVSWTAMICA 244
IL Q+H ++K ++ TAL+ YSK G ++A +F M ++VV+W+AM+
Sbjct: 417 ILLPQIHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSIF-KMIDHKDVVAWSAMLSC 475
Query: 245 FIQNGDLHRASVLFSQMMGGDVRPNEFT 328
+ Q GD A+ +F +M ++PNEFT
Sbjct: 476 YSQAGDCDGATNVFIKMSMQGMKPNEFT 503
>ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 866
Score = 104 bits (260), Expect(2) = 7e-23
Identities = 50/92 (54%), Positives = 64/92 (69%)
Frame = +2
Query: 53 VENLILSQQLHCCVVKGGLALDVNILTALMVVYSKCGKMDDAFELFYAMSGARNVVSWTA 232
++ + ++QLHC V+K G D+NI TALMV YSKC ++DDAF+LF M G +NVVSWTA
Sbjct: 307 IKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTA 366
Query: 233 MICAFIQNGDLHRASVLFSQMMGGDVRPNEFT 328
+I ++QNG RA LF QM VRPN FT
Sbjct: 367 IISGYVQNGRTDRAMNLFCQMRREGVRPNHFT 398
Score = 27.3 bits (59), Expect(2) = 7e-23
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +3
Query: 3 LKPTQLTFVTVIKLCAKLK 59
+K TQ F TVIKLCA +K
Sbjct: 290 VKLTQTIFATVIKLCANIK 308
Score = 65.5 bits (158), Expect = 4e-09
Identities = 34/88 (38%), Positives = 54/88 (61%)
Frame = +2
Query: 65 ILSQQLHCCVVKGGLALDVNILTALMVVYSKCGKMDDAFELFYAMSGARNVVSWTAMICA 244
I+ +Q+HC +K G DV++ T+L+ +Y K ++D +F M +NVVSWT+++
Sbjct: 109 IVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMR-VKNVVSWTSLLAG 167
Query: 245 FIQNGDLHRASVLFSQMMGGDVRPNEFT 328
+ QNG +A LFSQM ++PN FT
Sbjct: 168 YRQNGLNEQALKLFSQMQLEGIKPNPFT 195
Score = 55.8 bits (133), Expect = 3e-06
Identities = 30/84 (35%), Positives = 48/84 (57%)
Frame = +2
Query: 77 QLHCCVVKGGLALDVNILTALMVVYSKCGKMDDAFELFYAMSGARNVVSWTAMICAFIQN 256
Q+H VVK ++ TAL YSK G ++A ++F + +++V+W+AM+ + Q
Sbjct: 413 QIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELID-EKDIVAWSAMLSGYAQM 471
Query: 257 GDLHRASVLFSQMMGGDVRPNEFT 328
GD+ A +F Q+ V PNEFT
Sbjct: 472 GDIEGAVKIFLQLAKEGVEPNEFT 495
>emb|CBI28351.3| unnamed protein product [Vitis vinifera]
Length = 770
Score = 101 bits (251), Expect(2) = 8e-22
Identities = 50/93 (53%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
Frame = +2
Query: 53 VENLILSQQLHCCVVKGGLALDVNILTALMVVYSKCGKMDDAFELFYAMSGARNVVSWTA 232
++ + ++QLHC V+K G D+NI TALMV YSKC ++DDAF+LF M G +NVVSWTA
Sbjct: 307 IKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTA 366
Query: 233 MICAFIQNGDLHRASVLFSQMMGGD-VRPNEFT 328
+I ++QNG RA LF QM + V PNEFT
Sbjct: 367 IISGYVQNGRTDRAMNLFCQMRREEGVEPNEFT 399
Score = 27.3 bits (59), Expect(2) = 8e-22
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +3
Query: 3 LKPTQLTFVTVIKLCAKLK 59
+K TQ F TVIKLCA +K
Sbjct: 290 VKLTQTIFATVIKLCANIK 308
Score = 65.5 bits (158), Expect = 4e-09
Identities = 34/88 (38%), Positives = 54/88 (61%)
Frame = +2
Query: 65 ILSQQLHCCVVKGGLALDVNILTALMVVYSKCGKMDDAFELFYAMSGARNVVSWTAMICA 244
I+ +Q+HC +K G DV++ T+L+ +Y K ++D +F M +NVVSWT+++
Sbjct: 109 IVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMR-VKNVVSWTSLLAG 167
Query: 245 FIQNGDLHRASVLFSQMMGGDVRPNEFT 328
+ QNG +A LFSQM ++PN FT
Sbjct: 168 YRQNGLNEQALKLFSQMQLEGIKPNPFT 195
>gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
Length = 874
Score = 98.6 bits (244), Expect(2) = 2e-21
Identities = 49/92 (53%), Positives = 64/92 (69%)
Frame = +2
Query: 53 VENLILSQQLHCCVVKGGLALDVNILTALMVVYSKCGKMDDAFELFYAMSGARNVVSWTA 232
++ L L++QLH CV+K G L N++TAL YSKCG++ DA +F +G+RNVVSWTA
Sbjct: 315 LKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTA 374
Query: 233 MICAFIQNGDLHRASVLFSQMMGGDVRPNEFT 328
+I IQNGD+ A VLFS+M V PNEFT
Sbjct: 375 IISGCIQNGDIPLAVVLFSRMREDRVMPNEFT 406
Score = 28.9 bits (63), Expect(2) = 2e-21
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +3
Query: 6 KPTQLTFVTVIKLCAKLK 59
K TQ T+ TVIKLCA LK
Sbjct: 299 KMTQSTYATVIKLCANLK 316
Score = 61.6 bits (148), Expect = 6e-08
Identities = 34/88 (38%), Positives = 51/88 (57%)
Frame = +2
Query: 65 ILSQQLHCCVVKGGLALDVNILTALMVVYSKCGKMDDAFELFYAMSGARNVVSWTAMICA 244
IL Q+H V+K ++ TAL+ YSK G +DA +F M ++VV+W+AM+
Sbjct: 417 ILPPQIHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIF-KMIEQKDVVAWSAMLSC 475
Query: 245 FIQNGDLHRASVLFSQMMGGDVRPNEFT 328
Q GD A+ LF++M ++PNEFT
Sbjct: 476 HAQAGDCEGATYLFNKMAIQGIKPNEFT 503
>ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa
Japonica Group] gi|113579278|dbj|BAF17641.1|
Os05g0455900 [Oryza sativa Japonica Group]
gi|222631826|gb|EEE63958.1| hypothetical protein
OsJ_18783 [Oryza sativa Japonica Group]
Length = 874
Score = 98.6 bits (244), Expect(2) = 2e-21
Identities = 49/92 (53%), Positives = 64/92 (69%)
Frame = +2
Query: 53 VENLILSQQLHCCVVKGGLALDVNILTALMVVYSKCGKMDDAFELFYAMSGARNVVSWTA 232
++ L L++QLH CV+K G L N++TAL YSKCG++ DA +F +G+RNVVSWTA
Sbjct: 315 LKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTA 374
Query: 233 MICAFIQNGDLHRASVLFSQMMGGDVRPNEFT 328
+I IQNGD+ A VLFS+M V PNEFT
Sbjct: 375 IISGCIQNGDIPLAVVLFSRMREDRVMPNEFT 406
Score = 28.9 bits (63), Expect(2) = 2e-21
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +3
Query: 6 KPTQLTFVTVIKLCAKLK 59
K TQ T+ TVIKLCA LK
Sbjct: 299 KMTQSTYATVIKLCANLK 316
Score = 60.1 bits (144), Expect = 2e-07
Identities = 34/88 (38%), Positives = 50/88 (56%)
Frame = +2
Query: 65 ILSQQLHCCVVKGGLALDVNILTALMVVYSKCGKMDDAFELFYAMSGARNVVSWTAMICA 244
IL Q+H V+K + TAL+ YSK G +DA +F M ++VV+W+AM+
Sbjct: 417 ILPPQIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIF-KMIEQKDVVAWSAMLSC 475
Query: 245 FIQNGDLHRASVLFSQMMGGDVRPNEFT 328
Q GD A+ LF++M ++PNEFT
Sbjct: 476 HAQAGDCEGATYLFNKMAIQGIKPNEFT 503