BLASTX nr result
ID: Dioscorea21_contig00037679
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00037679
(547 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAH66391.1| OSIGBa0134J07.9 [Oryza sativa Indica Group] 47 5e-11
gb|AAL58228.1|AC084762_2 putative gag-pol polyprotein [Oryza sat... 47 1e-09
gb|ABA95820.1| retrotransposon protein, putative, unclassified [... 47 2e-09
gb|AAL75752.1|AC037197_10 Putative copia-type polyprotein [Oryza... 47 8e-09
ref|NP_001064026.2| Os10g0106900 [Oryza sativa Japonica Group] g... 47 8e-09
>emb|CAH66391.1| OSIGBa0134J07.9 [Oryza sativa Indica Group]
Length = 1314
Score = 47.4 bits (111), Expect(3) = 5e-11
Identities = 20/34 (58%), Positives = 28/34 (82%)
Frame = -2
Query: 444 QNFNYVFAAIEESKDLSTYSLNELMDSLEAHEQR 343
+ + Y+ AAIEESKDLST ++ +LM SLE+HE+R
Sbjct: 163 EKYEYIVAAIEESKDLSTLTIQQLMSSLESHEER 196
Score = 38.1 bits (87), Expect(3) = 5e-11
Identities = 18/37 (48%), Positives = 28/37 (75%)
Frame = -1
Query: 547 EFSSKVIIILNQI*A*GENLHHQKVVEKVLQGLPSKF 437
++ S+VI I+NQ+ GE+++ QKVVEK+L LP K+
Sbjct: 129 DYFSRVIEIVNQMRLYGEDINDQKVVEKILISLPEKY 165
Score = 26.2 bits (56), Expect(3) = 5e-11
Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 17/135 (12%)
Frame = -3
Query: 356 HMNRESMSQGKSIEPDFQTTLEVSAKLDVQ*ANPQKEGM--------------AEVLSDE 219
H R+ +G SIE FQ+ L + N QK G + +
Sbjct: 193 HEERKLQREGSSIENAFQSKLSFRPQNSRFRGNFQKNGFPMRDRGYFQKNGFSTQKEDGQ 252
Query: 218 DMKDQVVEETML---LAKKDLMQVMKVLARMEMIIFPFCNVIFVRHGHIENFCREKAKYP 48
+ +++ + L +++K +M CN R GHI +CR +
Sbjct: 253 ERREKSTSSSNLWCDISQKSSHTTDMCWKKMT------CNKC-KRKGHIAKYCRTREINR 305
Query: 47 ANFVEEKYEESNLFF 3
ANF +EK + + F
Sbjct: 306 ANFSQEKEKSEEMVF 320
>gb|AAL58228.1|AC084762_2 putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108708461|gb|ABF96256.1| retrotransposon protein,
putative, unclassified [Oryza sativa Japonica Group]
Length = 1167
Score = 47.4 bits (111), Expect(3) = 1e-09
Identities = 20/34 (58%), Positives = 28/34 (82%)
Frame = -2
Query: 444 QNFNYVFAAIEESKDLSTYSLNELMDSLEAHEQR 343
+ + Y+ AAIEESKDLST ++ +LM SLE+HE+R
Sbjct: 163 EKYEYIVAAIEESKDLSTLTIQQLMSSLESHEER 196
Score = 37.7 bits (86), Expect(3) = 1e-09
Identities = 18/37 (48%), Positives = 28/37 (75%)
Frame = -1
Query: 547 EFSSKVIIILNQI*A*GENLHHQKVVEKVLQGLPSKF 437
++ S+VI I+NQI GE+++ QKVVE++L LP K+
Sbjct: 129 DYFSRVIEIVNQIRLYGEDINDQKVVEEILISLPEKY 165
Score = 21.6 bits (44), Expect(3) = 1e-09
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -3
Query: 356 HMNRESMSQGKSIEPDFQTTLEVSAKLDVQ*ANPQKEG 243
H R+ +G SIE FQ+ L + N QK G
Sbjct: 193 HEERKLQREGSSIENAFQSKLSFRPQNSRFRGNFQKNG 230
>gb|ABA95820.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1142
Score = 47.4 bits (111), Expect(3) = 2e-09
Identities = 20/34 (58%), Positives = 28/34 (82%)
Frame = -2
Query: 444 QNFNYVFAAIEESKDLSTYSLNELMDSLEAHEQR 343
+ + Y+ AAIEESKDLST ++ +LM SLE+HE+R
Sbjct: 163 EKYEYIVAAIEESKDLSTLTIQQLMSSLESHEER 196
Score = 38.1 bits (87), Expect(3) = 2e-09
Identities = 18/37 (48%), Positives = 28/37 (75%)
Frame = -1
Query: 547 EFSSKVIIILNQI*A*GENLHHQKVVEKVLQGLPSKF 437
++ S+VI I+NQ+ GE+++ QKVVEK+L LP K+
Sbjct: 129 DYFSRVIEIVNQMRLYGEDINDQKVVEKILISLPEKY 165
Score = 20.4 bits (41), Expect(3) = 2e-09
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 356 HMNRESMSQGKSIEPDFQTTL 294
H R+ +G SIE FQ+ L
Sbjct: 193 HEERKLQREGSSIENAFQSKL 213
>gb|AAL75752.1|AC037197_10 Putative copia-type polyprotein [Oryza sativa Japonica Group]
gi|31429795|gb|AAP51797.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1350
Score = 47.4 bits (111), Expect(3) = 8e-09
Identities = 20/34 (58%), Positives = 28/34 (82%)
Frame = -2
Query: 444 QNFNYVFAAIEESKDLSTYSLNELMDSLEAHEQR 343
+ + Y+ AAIEESKDLST ++ +LM SLE+HE+R
Sbjct: 163 EKYEYIVAAIEESKDLSTLTIQQLMSSLESHEER 196
Score = 36.2 bits (82), Expect(3) = 8e-09
Identities = 17/37 (45%), Positives = 27/37 (72%)
Frame = -1
Query: 547 EFSSKVIIILNQI*A*GENLHHQKVVEKVLQGLPSKF 437
++ +VI I+NQ+ GE+++ QKVVEK+L LP K+
Sbjct: 129 DYFPRVIEIVNQMRLYGEDINDQKVVEKILISLPEKY 165
Score = 20.4 bits (41), Expect(3) = 8e-09
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 356 HMNRESMSQGKSIEPDFQTTL 294
H R+ +G SIE FQ+ L
Sbjct: 193 HEERKLQREGSSIENAFQSKL 213
>ref|NP_001064026.2| Os10g0106900 [Oryza sativa Japonica Group]
gi|255679164|dbj|BAF25940.2| Os10g0106900 [Oryza sativa
Japonica Group]
Length = 646
Score = 47.4 bits (111), Expect(3) = 8e-09
Identities = 20/34 (58%), Positives = 28/34 (82%)
Frame = -2
Query: 444 QNFNYVFAAIEESKDLSTYSLNELMDSLEAHEQR 343
+ + Y+ AAIEESKDLST ++ +LM SLE+HE+R
Sbjct: 163 EKYEYIVAAIEESKDLSTLTIQQLMSSLESHEER 196
Score = 36.2 bits (82), Expect(3) = 8e-09
Identities = 17/37 (45%), Positives = 27/37 (72%)
Frame = -1
Query: 547 EFSSKVIIILNQI*A*GENLHHQKVVEKVLQGLPSKF 437
++ +VI I+NQ+ GE+++ QKVVEK+L LP K+
Sbjct: 129 DYFPRVIEIVNQMRLYGEDINDQKVVEKILISLPEKY 165
Score = 20.4 bits (41), Expect(3) = 8e-09
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 356 HMNRESMSQGKSIEPDFQTTL 294
H R+ +G SIE FQ+ L
Sbjct: 193 HEERKLQREGSSIENAFQSKL 213