BLASTX nr result

ID: Dioscorea21_contig00037516 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00037516
         (690 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002437418.1| hypothetical protein SORBIDRAFT_10g026650 [S...   174   1e-41
ref|XP_002304266.1| predicted protein [Populus trichocarpa] gi|2...   174   1e-41
ref|XP_002326634.1| predicted protein [Populus trichocarpa] gi|2...   171   2e-40
emb|CAN67111.1| hypothetical protein VITISV_025310 [Vitis vinifera]   169   6e-40
ref|XP_002533419.1| ring finger protein, putative [Ricinus commu...   168   1e-39

>ref|XP_002437418.1| hypothetical protein SORBIDRAFT_10g026650 [Sorghum bicolor]
           gi|241915641|gb|EER88785.1| hypothetical protein
           SORBIDRAFT_10g026650 [Sorghum bicolor]
          Length = 162

 Score =  174 bits (442), Expect = 1e-41
 Identities = 84/134 (62%), Positives = 100/134 (74%)
 Frame = +1

Query: 139 STLNYDVVVILAAMICALVCALGLNTMLKCVVRCTRRALTEPAGWVAARRMNAGLKKEEX 318
           S L+YDVVVILAAM+CALVCALGLN+ML+CVVRCTRRA+++PA WVA RR NAGLK+EE 
Sbjct: 23  SPLDYDVVVILAAMLCALVCALGLNSMLQCVVRCTRRAVSDPAAWVAHRRANAGLKREE- 81

Query: 319 XXXXXXXXXXXXXXXXXESTSRCAICLVDFCDGDTVRVLPACSHRFHVACVDKWLLSHSS 498
                             + + CAICL DF DG+ +RVLP C HRFHV C+D+WL+SH S
Sbjct: 82  -----VVALPVATYVASPAPAGCAICLSDFADGERIRVLPVCGHRFHVVCIDRWLVSHCS 136

Query: 499 CPTCRHRLSSLSAL 540
           CPTCR RLSS SA+
Sbjct: 137 CPTCRRRLSSDSAV 150


>ref|XP_002304266.1| predicted protein [Populus trichocarpa] gi|222841698|gb|EEE79245.1|
           predicted protein [Populus trichocarpa]
          Length = 166

 Score =  174 bits (441), Expect = 1e-41
 Identities = 83/145 (57%), Positives = 104/145 (71%)
 Frame = +1

Query: 97  TTSPASSPDQKHQKSTLNYDVVVILAAMICALVCALGLNTMLKCVVRCTRRALTEPAGWV 276
           T S  S  DQ  Q+ T++++V+VI+AAM+CA VCALGLN+ML+CV +CT+R +TE AGW+
Sbjct: 13  TVSAPSCHDQS-QEPTMDFNVMVIVAAMLCAFVCALGLNSMLQCVFQCTQRTVTETAGWI 71

Query: 277 AARRMNAGLKKEEXXXXXXXXXXXXXXXXXXESTSRCAICLVDFCDGDTVRVLPACSHRF 456
           ++RR N+GLKK E                   STS CAICL DF DGD +RVLP C+H F
Sbjct: 72  SSRRQNSGLKKREMVGLPTSTYAHQGSP---SSTSGCAICLADFTDGDKIRVLPKCNHEF 128

Query: 457 HVACVDKWLLSHSSCPTCRHRLSSL 531
           HV C+DKWLLSHSSCPTCRHRL S+
Sbjct: 129 HVDCIDKWLLSHSSCPTCRHRLKSI 153


>ref|XP_002326634.1| predicted protein [Populus trichocarpa] gi|222833956|gb|EEE72433.1|
           predicted protein [Populus trichocarpa]
          Length = 138

 Score =  171 bits (432), Expect = 2e-40
 Identities = 79/128 (61%), Positives = 97/128 (75%)
 Frame = +1

Query: 145 LNYDVVVILAAMICALVCALGLNTMLKCVVRCTRRALTEPAGWVAARRMNAGLKKEEXXX 324
           ++++V+VI+AAMICALVCALGLN+ML+CV +CTRRA+TEPA W+++RR N+GLKK+E   
Sbjct: 1   MDFNVMVIVAAMICALVCALGLNSMLQCVFQCTRRAVTEPAEWISSRRRNSGLKKKEMVA 60

Query: 325 XXXXXXXXXXXXXXXESTSRCAICLVDFCDGDTVRVLPACSHRFHVACVDKWLLSHSSCP 504
                           S S CAICL DF DGD +RVLP C+HRFH  C+DKWLLSHSSCP
Sbjct: 61  LPTSTYAHQGSP---SSASGCAICLADFTDGDKIRVLPKCNHRFHADCIDKWLLSHSSCP 117

Query: 505 TCRHRLSS 528
           TCRHRL S
Sbjct: 118 TCRHRLKS 125


>emb|CAN67111.1| hypothetical protein VITISV_025310 [Vitis vinifera]
          Length = 163

 Score =  169 bits (427), Expect = 6e-40
 Identities = 81/156 (51%), Positives = 106/156 (67%)
 Frame = +1

Query: 73  SSSMEDHNTTSPASSPDQKHQKSTLNYDVVVILAAMICALVCALGLNTMLKCVVRCTRRA 252
           S ++    T S    P Q H+ +TL++++VVI+AAM+C LVCALGLN+ L+CVVRCTR A
Sbjct: 2   SEALPPSPTPSSTPPPLQPHEAATLDFNLVVIVAAMVCFLVCALGLNSTLQCVVRCTRLA 61

Query: 253 LTEPAGWVAARRMNAGLKKEEXXXXXXXXXXXXXXXXXXESTSRCAICLVDFCDGDTVRV 432
           LTEP  W A+RR+N+GLKK++                    +S C ICL DF DG+ +RV
Sbjct: 62  LTEPVQWAASRRLNSGLKKKD---MVALPTSTYSNSGSPSRSSGCVICLADFSDGEKIRV 118

Query: 433 LPACSHRFHVACVDKWLLSHSSCPTCRHRLSSLSAL 540
           LP C+H FHV C+DKWLLSHSSCPTCR++L S  +L
Sbjct: 119 LPKCNHWFHVLCIDKWLLSHSSCPTCRNQLKSNDSL 154


>ref|XP_002533419.1| ring finger protein, putative [Ricinus communis]
           gi|223526732|gb|EEF28962.1| ring finger protein,
           putative [Ricinus communis]
          Length = 178

 Score =  168 bits (425), Expect = 1e-39
 Identities = 80/159 (50%), Positives = 103/159 (64%), Gaps = 5/159 (3%)
 Frame = +1

Query: 61  ISTASSSMEDHNTTSPASSPDQKHQKSTLNYDVVVILAAMICALVCALGLNTMLKCVVRC 240
           IS + +     +T+SP   P  +   +TLN++V+VI+ AM+CALVCALGLN+ML+C ++C
Sbjct: 4   ISPSPTFSPTSSTSSPCHQPQGEPFTTTLNFNVMVIVGAMLCALVCALGLNSMLQCAIQC 63

Query: 241 TRRALTEPAGWVAARRMNAGLKKEEXXXXXXXXXXXXXXXXXXE-----STSRCAICLVD 405
           T R +T P  WVA+RR N+GLKK+E                        S S CAICL D
Sbjct: 64  THRVITGPVEWVASRRQNSGLKKKEMVALPTSTYVNSTSSPSASASSSASASSCAICLAD 123

Query: 406 FCDGDTVRVLPACSHRFHVACVDKWLLSHSSCPTCRHRL 522
           F DG+ +RVLP C+HRFHV C+DKWLLSH SCPTCR RL
Sbjct: 124 FSDGEKIRVLPQCNHRFHVGCIDKWLLSHPSCPTCRRRL 162


Top