BLASTX nr result

ID: Dioscorea21_contig00037172 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00037172
         (232 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI15662.3| unnamed protein product [Vitis vinifera]              105   5e-21
ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containi...   105   5e-21
ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containi...   104   9e-21
emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]   103   1e-20
ref|XP_002322250.1| predicted protein [Populus trichocarpa] gi|2...   102   3e-20

>emb|CBI15662.3| unnamed protein product [Vitis vinifera]
          Length = 657

 Score =  105 bits (261), Expect = 5e-21
 Identities = 47/77 (61%), Positives = 60/77 (77%)
 Frame = +2

Query: 2   MWEEMPEAAPRMFATVIRASAGLGEVFVGSQLHACVAKLGLYEQIYVSCALIDMYSKCGS 181
           MW++  +A  RMF T+IRASAGLG +F G QLH+C  K G+   ++V+CALIDMYSKCGS
Sbjct: 223 MWQDFSDAGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGS 282

Query: 182 IREAQWVFDEMPDKTVV 232
           I +AQ VFD+MP+KT V
Sbjct: 283 IEDAQCVFDQMPEKTTV 299


>ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score =  105 bits (261), Expect = 5e-21
 Identities = 47/77 (61%), Positives = 60/77 (77%)
 Frame = +2

Query: 2   MWEEMPEAAPRMFATVIRASAGLGEVFVGSQLHACVAKLGLYEQIYVSCALIDMYSKCGS 181
           MW++  +A  RMF T+IRASAGLG +F G QLH+C  K G+   ++V+CALIDMYSKCGS
Sbjct: 223 MWQDFSDAGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGS 282

Query: 182 IREAQWVFDEMPDKTVV 232
           I +AQ VFD+MP+KT V
Sbjct: 283 IEDAQCVFDQMPEKTTV 299


>ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
           gi|449517215|ref|XP_004165641.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  104 bits (259), Expect = 9e-21
 Identities = 50/77 (64%), Positives = 59/77 (76%)
 Frame = +2

Query: 2   MWEEMPEAAPRMFATVIRASAGLGEVFVGSQLHACVAKLGLYEQIYVSCALIDMYSKCGS 181
           M EE  +  PR FAT+IRASAGL  +F G QLH+C  K GL + I+VSCALIDMYSKCGS
Sbjct: 224 MREEFYDCGPRTFATMIRASAGLEIIFPGRQLHSCAIKAGLGQDIFVSCALIDMYSKCGS 283

Query: 182 IREAQWVFDEMPDKTVV 232
           + +A  VFDEMPDKT+V
Sbjct: 284 LEDAHCVFDEMPDKTIV 300


>emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score =  103 bits (258), Expect = 1e-20
 Identities = 47/77 (61%), Positives = 59/77 (76%)
 Frame = +2

Query: 2   MWEEMPEAAPRMFATVIRASAGLGEVFVGSQLHACVAKLGLYEQIYVSCALIDMYSKCGS 181
           MW+   +A  RMF T+IRASAGLG +F G QLH+C  K G+   ++V+CALIDMYSKCGS
Sbjct: 223 MWQXFSDAGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGS 282

Query: 182 IREAQWVFDEMPDKTVV 232
           I +AQ VFD+MP+KT V
Sbjct: 283 IEDAQCVFDQMPEKTTV 299


>ref|XP_002322250.1| predicted protein [Populus trichocarpa] gi|222869246|gb|EEF06377.1|
           predicted protein [Populus trichocarpa]
          Length = 548

 Score =  102 bits (254), Expect = 3e-20
 Identities = 47/77 (61%), Positives = 60/77 (77%)
 Frame = +2

Query: 2   MWEEMPEAAPRMFATVIRASAGLGEVFVGSQLHACVAKLGLYEQIYVSCALIDMYSKCGS 181
           MWEE  +A    FA +IRASAGL  + +G QLHAC  K+G+ + I+VSCALIDMYSKCGS
Sbjct: 67  MWEEFSDAGSFTFAVMIRASAGLELISIGRQLHACTLKMGIGDDIFVSCALIDMYSKCGS 126

Query: 182 IREAQWVFDEMPDKTVV 232
           I +A++VF+EMP+KT V
Sbjct: 127 IEDARFVFEEMPEKTTV 143


Top