BLASTX nr result

ID: Dioscorea21_contig00037102 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00037102
         (333 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containi...   171   4e-41
emb|CBI17228.3| unnamed protein product [Vitis vinifera]              171   4e-41
ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containi...   168   5e-40
ref|XP_002300166.1| predicted protein [Populus trichocarpa] gi|2...   144   1e-32
gb|ABK26521.1| unknown [Picea sitchensis]                             137   9e-31

>ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  171 bits (434), Expect = 4e-41
 Identities = 78/110 (70%), Positives = 93/110 (84%)
 Frame = -1

Query: 333 TMKHYTCIVDLFGRAGRLEEALEFMKAMPVVPDFVLWGALFSACRAHKNIEMAELAAENL 154
           TMKHYT IVDL GRAGRL+EAL F+++MP+ PDFV+WGALF ACRAHKNIEMAEL AE L
Sbjct: 441 TMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKL 500

Query: 153 LRLKPSHSGGYVFLSNMYSSARRWDDAEKVRTTMKDQSVGKSPGWSYIEV 4
           L+L+P H G YVFLSN+Y++  RW+D E+VRT MK++ V K PGWSYIEV
Sbjct: 501 LQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEV 550


>emb|CBI17228.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  171 bits (434), Expect = 4e-41
 Identities = 78/110 (70%), Positives = 93/110 (84%)
 Frame = -1

Query: 333 TMKHYTCIVDLFGRAGRLEEALEFMKAMPVVPDFVLWGALFSACRAHKNIEMAELAAENL 154
           TMKHYT IVDL GRAGRL+EAL F+++MP+ PDFV+WGALF ACRAHKNIEMAEL AE L
Sbjct: 354 TMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKL 413

Query: 153 LRLKPSHSGGYVFLSNMYSSARRWDDAEKVRTTMKDQSVGKSPGWSYIEV 4
           L+L+P H G YVFLSN+Y++  RW+D E+VRT MK++ V K PGWSYIEV
Sbjct: 414 LQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEV 463


>ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
           gi|449505311|ref|XP_004162432.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  168 bits (425), Expect = 5e-40
 Identities = 73/110 (66%), Positives = 92/110 (83%)
 Frame = -1

Query: 333 TMKHYTCIVDLFGRAGRLEEALEFMKAMPVVPDFVLWGALFSACRAHKNIEMAELAAENL 154
           +MKHYT +VD+ GRAGRL+EAL+F++AMP+ PDFV+WGALF ACR HKN+EMAELA++ L
Sbjct: 443 SMKHYTLVVDMLGRAGRLDEALKFIRAMPITPDFVVWGALFCACRTHKNVEMAELASKKL 502

Query: 153 LRLKPSHSGGYVFLSNMYSSARRWDDAEKVRTTMKDQSVGKSPGWSYIEV 4
           L+L+P H G YVFLSN Y+S  RWDDAE+VR +M+D    K PGWS+IEV
Sbjct: 503 LQLEPKHPGSYVFLSNAYASVGRWDDAERVRVSMRDHGAHKDPGWSFIEV 552


>ref|XP_002300166.1| predicted protein [Populus trichocarpa] gi|222847424|gb|EEE84971.1|
           predicted protein [Populus trichocarpa]
          Length = 719

 Score =  144 bits (362), Expect = 1e-32
 Identities = 63/110 (57%), Positives = 88/110 (80%)
 Frame = -1

Query: 333 TMKHYTCIVDLFGRAGRLEEALEFMKAMPVVPDFVLWGALFSACRAHKNIEMAELAAENL 154
           +MKHYT IVD+ GR+G+L+EAL F++ MP+ PDFV+WGALF ACRAHK  +MA+ A   L
Sbjct: 483 SMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGALFCACRAHKKTKMAKFALNKL 542

Query: 153 LRLKPSHSGGYVFLSNMYSSARRWDDAEKVRTTMKDQSVGKSPGWSYIEV 4
           L+L+P+H+G Y+FLSN Y++  +W+DAE+VR  M+++ V K+ GWS IEV
Sbjct: 543 LKLEPTHTGNYIFLSNAYAALGQWEDAERVRVLMQNRGVHKNSGWSCIEV 592


>gb|ABK26521.1| unknown [Picea sitchensis]
          Length = 370

 Score =  137 bits (345), Expect = 9e-31
 Identities = 65/108 (60%), Positives = 81/108 (75%)
 Frame = -1

Query: 327 KHYTCIVDLFGRAGRLEEALEFMKAMPVVPDFVLWGALFSACRAHKNIEMAELAAENLLR 148
           +HY+C+VDLFGRAG L+EAL F+  MPV P+  +WG+L  ACR H NIE+AE A E L+ 
Sbjct: 136 EHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGNIELAERAVEQLIE 195

Query: 147 LKPSHSGGYVFLSNMYSSARRWDDAEKVRTTMKDQSVGKSPGWSYIEV 4
           L P + G YV LSN+Y++A RWDDA KVR  MKD+SV K PG S+IEV
Sbjct: 196 LTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSWIEV 243


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