BLASTX nr result
ID: Dioscorea21_contig00036212
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00036212
(323 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containi... 112 3e-23
ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containi... 112 3e-23
ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containi... 112 4e-23
gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygr... 91 1e-16
gb|ADE77505.1| unknown [Picea sitchensis] 91 1e-16
>ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 112 bits (280), Expect = 3e-23
Identities = 55/106 (51%), Positives = 72/106 (67%)
Frame = +1
Query: 1 AQLNLKHLGMPIHGCAVKFGACHDVFTNTAIVHMYAILACISDACQVFDGMPERNSVTWN 180
AQL +G IHG ++ G DV+T+TA+VH+Y ISDA Q+FD MPERN+VTWN
Sbjct: 100 AQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWN 159
Query: 181 AMITGFVHNRRFKEAHELFNEMRRSGVEMGEVTMVNALSACAHLGA 318
A+ITG+ HNR+F +A + F M G + E T+V LSAC+HLGA
Sbjct: 160 ALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGA 205
Score = 59.3 bits (142), Expect = 3e-07
Identities = 28/82 (34%), Positives = 45/82 (54%)
Frame = +1
Query: 70 DVFTNTAIVHMYAILACISDACQVFDGMPERNSVTWNAMITGFVHNRRFKEAHELFNEMR 249
+VF TA++ MYA + + +VF+ + E+N TWN +I+G+ N + A + F+ M
Sbjct: 224 NVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRML 283
Query: 250 RSGVEMGEVTMVNALSACAHLG 315
+ EVT + L AC H G
Sbjct: 284 MENFKPDEVTFLGVLCACCHQG 305
>ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 112 bits (280), Expect = 3e-23
Identities = 55/106 (51%), Positives = 72/106 (67%)
Frame = +1
Query: 1 AQLNLKHLGMPIHGCAVKFGACHDVFTNTAIVHMYAILACISDACQVFDGMPERNSVTWN 180
AQL +G IHG ++ G DV+T+TA+VH+Y ISDA Q+FD MPERN+VTWN
Sbjct: 100 AQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWN 159
Query: 181 AMITGFVHNRRFKEAHELFNEMRRSGVEMGEVTMVNALSACAHLGA 318
A+ITG+ HNR+F +A + F M G + E T+V LSAC+HLGA
Sbjct: 160 ALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGA 205
Score = 59.3 bits (142), Expect = 3e-07
Identities = 28/82 (34%), Positives = 45/82 (54%)
Frame = +1
Query: 70 DVFTNTAIVHMYAILACISDACQVFDGMPERNSVTWNAMITGFVHNRRFKEAHELFNEMR 249
+VF TA++ MYA + + +VF+ + E+N TWN +I+G+ N + A + F+ M
Sbjct: 224 NVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRML 283
Query: 250 RSGVEMGEVTMVNALSACAHLG 315
+ EVT + L AC H G
Sbjct: 284 MENFKPDEVTFLGVLCACCHQG 305
>ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera] gi|297733922|emb|CBI15169.3| unnamed
protein product [Vitis vinifera]
Length = 615
Score = 112 bits (279), Expect = 4e-23
Identities = 54/107 (50%), Positives = 76/107 (71%)
Frame = +1
Query: 1 AQLNLKHLGMPIHGCAVKFGACHDVFTNTAIVHMYAILACISDACQVFDGMPERNSVTWN 180
AQL + LG IH C ++ G +V+ +TA+V+MY + +SDA QVFD +P+RN V+WN
Sbjct: 153 AQLCRQELGKAIHCCIIQMGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWN 212
Query: 181 AMITGFVHNRRFKEAHELFNEMRRSGVEMGEVTMVNALSACAHLGAL 321
A+ITG+ HNR F++ ++F EM+ +G + EVTMV L ACAHLGAL
Sbjct: 213 ALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLACAHLGAL 259
Score = 60.8 bits (146), Expect = 1e-07
Identities = 29/82 (35%), Positives = 45/82 (54%)
Frame = +1
Query: 70 DVFTNTAIVHMYAILACISDACQVFDGMPERNSVTWNAMITGFVHNRRFKEAHELFNEMR 249
+VF TA++ MYA + +A ++F M +N TWN +I+G+ N R + A + F+ M
Sbjct: 277 NVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMI 336
Query: 250 RSGVEMGEVTMVNALSACAHLG 315
+ EVT + L AC H G
Sbjct: 337 MEKFKPDEVTFLGVLCACCHQG 358
>gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
Length = 837
Score = 90.9 bits (224), Expect = 1e-16
Identities = 48/100 (48%), Positives = 62/100 (62%)
Frame = +1
Query: 22 LGMPIHGCAVKFGACHDVFTNTAIVHMYAILACISDACQVFDGMPERNSVTWNAMITGFV 201
L IH V+ G D+ +TA+VHMYA I DA QVFD M R+ V+W+AMI +V
Sbjct: 382 LAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYV 441
Query: 202 HNRRFKEAHELFNEMRRSGVEMGEVTMVNALSACAHLGAL 321
N +EA E F+ M+R+ VE VT +N L+AC HLGAL
Sbjct: 442 ENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGAL 481
Score = 64.7 bits (156), Expect = 8e-09
Identities = 31/94 (32%), Positives = 49/94 (52%)
Frame = +1
Query: 25 GMPIHGCAVKFGACHDVFTNTAIVHMYAILACISDACQVFDGMPERNSVTWNAMITGFVH 204
G +H + G DV TA++ MY I A +VFD M R+ V+W MI G+
Sbjct: 282 GKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAE 341
Query: 205 NRRFKEAHELFNEMRRSGVEMGEVTMVNALSACA 306
N ++A LF M+ G++ +T ++ ++ACA
Sbjct: 342 NSNIEDAFGLFATMQEEGIQPDRITYIHIINACA 375
Score = 59.3 bits (142), Expect = 3e-07
Identities = 33/98 (33%), Positives = 50/98 (51%)
Frame = +1
Query: 22 LGMPIHGCAVKFGACHDVFTNTAIVHMYAILACISDACQVFDGMPERNSVTWNAMITGFV 201
LGM I+ A+K + A+++M I A +F+ M +R+ VTWN MI G+
Sbjct: 483 LGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYS 542
Query: 202 HNRRFKEAHELFNEMRRSGVEMGEVTMVNALSACAHLG 315
+ +EA +LF+ M + VT V LSAC+ G
Sbjct: 543 LHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAG 580
Score = 57.8 bits (138), Expect = 9e-07
Identities = 32/100 (32%), Positives = 52/100 (52%)
Frame = +1
Query: 22 LGMPIHGCAVKFGACHDVFTNTAIVHMYAILACISDACQVFDGMPERNSVTWNAMITGFV 201
LG H +K G D TA+V MY + A QVFDG+ +R+ T+N MI G+
Sbjct: 180 LGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYA 239
Query: 202 HNRRFKEAHELFNEMRRSGVEMGEVTMVNALSACAHLGAL 321
+ ++A +LF M++ G + ++ ++ L C+ AL
Sbjct: 240 KSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEAL 279
>gb|ADE77505.1| unknown [Picea sitchensis]
Length = 514
Score = 90.9 bits (224), Expect = 1e-16
Identities = 44/105 (41%), Positives = 63/105 (60%)
Frame = +1
Query: 1 AQLNLKHLGMPIHGCAVKFGACHDVFTNTAIVHMYAILACISDACQVFDGMPERNSVTWN 180
A L LG H V+ G D+ +A+V MYA + DACQVFD MP+RN V+WN
Sbjct: 153 ADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWN 212
Query: 181 AMITGFVHNRRFKEAHELFNEMRRSGVEMGEVTMVNALSACAHLG 315
++ITG + R +A LF +M ++G++ E++ V LSAC+H G
Sbjct: 213 SIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTG 257
Score = 77.0 bits (188), Expect = 1e-12
Identities = 48/130 (36%), Positives = 61/130 (46%), Gaps = 31/130 (23%)
Frame = +1
Query: 25 GMPIHGCAVKFGACHDVFTNTAIVHMYAILACISDACQVFDGMPERNSVTWNAMITGFVH 204
G H +K G DV TA+VHMYA + DA VFD M ER++ TWNAMITG
Sbjct: 29 GKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHVFDKMSERSTRTWNAMITGHAQ 88
Query: 205 NRRFKEAHEL-------------------------------FNEMRRSGVEMGEVTMVNA 291
NR K+A +L FN+MR++G++ M +
Sbjct: 89 NRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSV 148
Query: 292 LSACAHLGAL 321
LSACA L AL
Sbjct: 149 LSACADLAAL 158