BLASTX nr result

ID: Dioscorea21_contig00034745 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00034745
         (383 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulga...    62   5e-08
gb|ABF95298.1| retrotransposon protein, putative, unclassified [...    60   2e-07
ref|XP_002454801.1| hypothetical protein SORBIDRAFT_04g037700 [S...    59   3e-07
ref|XP_003548768.1| PREDICTED: uncharacterized protein LOC100775...    59   4e-07
ref|NP_189164.1| Ribonuclease H-like protein [Arabidopsis thalia...    59   5e-07

>emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1365

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 32/89 (35%), Positives = 47/89 (52%)
 Frame = +1

Query: 70   WNRIWCLKVAPRAKHFIWVLLHNAVKTSDYLHRLNLGPQSMCCFCNLYPESADHLFRTCY 249
            WN+ W   + P+ K F W LL+ A+ TS  L + N+  Q MC  C    E+  HLFR C 
Sbjct: 1054 WNKFWASDLLPKWKFFTWRLLNKALATSSNLRKRNILIQEMCSLCKQDKENESHLFRDCN 1113

Query: 250  KTQIIWSIVCNVTGRTINIMSEISAGIWI 336
             ++ +W+   ++ G  I  M+ IS   WI
Sbjct: 1114 ISRHVWA--SSLLGIRICPMTVISIEDWI 1140


>gb|ABF95298.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 835

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 26/84 (30%), Positives = 41/84 (48%)
 Frame = +1

Query: 25  AHFNQNILDHDSWDGWNRIWCLKVAPRAKHFIWVLLHNAVKTSDYLHRLNLGPQSMCCFC 204
           A ++  + +  +W  W  IW  K  PR K F W+L  N + +   LH+  + P   C  C
Sbjct: 728 ALYHLQMSNFQTWTQWEYIWESKAPPRIKFFGWLLAFNRLPSRVNLHKKKILPTPTCEIC 787

Query: 205 NLYPESADHLFRTCYKTQIIWSIV 276
           +  PE ADH+F  C      W+++
Sbjct: 788 SSAPEDADHIFLHCPLASAFWTLI 811


>ref|XP_002454801.1| hypothetical protein SORBIDRAFT_04g037700 [Sorghum bicolor]
           gi|241934632|gb|EES07777.1| hypothetical protein
           SORBIDRAFT_04g037700 [Sorghum bicolor]
          Length = 322

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 23/68 (33%), Positives = 35/68 (51%)
 Frame = +1

Query: 64  DGWNRIWCLKVAPRAKHFIWVLLHNAVKTSDYLHRLNLGPQSMCCFCNLYPESADHLFRT 243
           D WNR+W L+  P+ KHF+W + HN +     L R  +   ++C  CN   +   HLF  
Sbjct: 48  DFWNRLWKLECPPKVKHFLWRMSHNTLPVKRMLSRRGVKTDTLCNMCNRLDKDGAHLFFK 107

Query: 244 CYKTQIIW 267
           C + +  W
Sbjct: 108 CKEAKTAW 115


>ref|XP_003548768.1| PREDICTED: uncharacterized protein LOC100775187 [Glycine max]
          Length = 725

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
 Frame = +1

Query: 10  TSMIYAHFNQNILDHDSWDGWNRIWCLKVAPRAKHFIWVLLHNAVKTSDYLHRLNLGPQS 189
           T+  Y       LD D   G+  +W +K+ PRA  F W LL + + T D L R ++  ++
Sbjct: 403 TNSAYLCVKAEHLDEDQCLGFQHLWNIKIPPRALVFAWRLLWDRLPTKDNLIRRHVTIEN 462

Query: 190 -MCCFCNLYPESADHLFRTCYKTQIIW 267
            +C FC    ESA HLF +C+K   +W
Sbjct: 463 DLCPFCQNKAESASHLFFSCHKVMPLW 489


>ref|NP_189164.1| Ribonuclease H-like protein [Arabidopsis thaliana]
           gi|9294184|dbj|BAB02086.1| reverse transcriptase-like
           protein [Arabidopsis thaliana]
           gi|332643482|gb|AEE77003.1| Ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 343

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 26/64 (40%), Positives = 36/64 (56%)
 Frame = +1

Query: 76  RIWCLKVAPRAKHFIWVLLHNAVKTSDYLHRLNLGPQSMCCFCNLYPESADHLFRTCYKT 255
           +IW LK AP+ KHF+W LL  A+ T D L R ++     C  C    E++ HLF  C+  
Sbjct: 17  KIWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYA 76

Query: 256 QIIW 267
           Q +W
Sbjct: 77  QQVW 80


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