BLASTX nr result

ID: Dioscorea21_contig00034640 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00034640
         (308 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002526713.1| conserved hypothetical protein [Ricinus comm...   106   2e-21
emb|CAN78493.1| hypothetical protein VITISV_037041 [Vitis vinifera]   106   2e-21
gb|ABD63142.1| Retrotransposon gag protein [Asparagus officinalis]     98   6e-19
ref|XP_003631512.1| PREDICTED: uncharacterized protein LOC100852...    96   2e-18
ref|XP_003631302.1| PREDICTED: uncharacterized protein LOC100854...    96   2e-18

>ref|XP_002526713.1| conserved hypothetical protein [Ricinus communis]
           gi|223533946|gb|EEF35670.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 496

 Score =  106 bits (264), Expect = 2e-21
 Identities = 51/81 (62%), Positives = 66/81 (81%)
 Frame = +1

Query: 7   MPSKKKDPGSFIIPCNIGNLGEEMALADSGASINVMPYTFFRKLGLGEPRPTKMTLQLAD 186
           +P K++D  SF IPC IG+L    ALAD GASIN+MP + F KLGL EP+PT+M++QLAD
Sbjct: 261 LPLKRRDLESFTIPCMIGDLSISGALADLGASINLMPTSLFAKLGLHEPKPTRMSVQLAD 320

Query: 187 RSVRRPRGIVEDVLVKVDKYI 249
           R+V+ PRGI+EDVL+KVDK+I
Sbjct: 321 RTVKIPRGIIEDVLIKVDKFI 341


>emb|CAN78493.1| hypothetical protein VITISV_037041 [Vitis vinifera]
          Length = 1048

 Score =  106 bits (264), Expect = 2e-21
 Identities = 49/83 (59%), Positives = 63/83 (75%)
 Frame = +1

Query: 1   QNMPSKKKDPGSFIIPCNIGNLGEEMALADSGASINVMPYTFFRKLGLGEPRPTKMTLQL 180
           + +P K KDPGSF IPC IG+   +  L D G S+N+MP + FRKLGLGE + T + LQL
Sbjct: 342 RELPPKLKDPGSFTIPCTIGDFDFDKVLCDLGESVNLMPLSIFRKLGLGEVKLTTVCLQL 401

Query: 181 ADRSVRRPRGIVEDVLVKVDKYI 249
           ADRS++ PRGI+EDVLVKVDK++
Sbjct: 402 ADRSIKHPRGIIEDVLVKVDKFL 424


>gb|ABD63142.1| Retrotransposon gag protein [Asparagus officinalis]
          Length = 1788

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 47/81 (58%), Positives = 63/81 (77%)
 Frame = +1

Query: 7   MPSKKKDPGSFIIPCNIGNLGEEMALADSGASINVMPYTFFRKLGLGEPRPTKMTLQLAD 186
           MP K KDPG   IPC IGN   + AL D GAS+N++PY+ +++LG+GE +PT+ TLQLAD
Sbjct: 535 MPLKYKDPGCPTIPCVIGNTHIDKALLDLGASVNLLPYSVYQQLGVGELKPTRCTLQLAD 594

Query: 187 RSVRRPRGIVEDVLVKVDKYI 249
           RSV+ P+G VEDVL+KV ++I
Sbjct: 595 RSVKIPKGEVEDVLIKVGEFI 615


>ref|XP_003631512.1| PREDICTED: uncharacterized protein LOC100852941 [Vitis vinifera]
          Length = 1380

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 46/79 (58%), Positives = 60/79 (75%)
 Frame = +1

Query: 10  PSKKKDPGSFIIPCNIGNLGEEMALADSGASINVMPYTFFRKLGLGEPRPTKMTLQLADR 189
           P K KDPG   I  NIG    E AL D GAS+N++PY+ +++LGLGE +PT +TL LADR
Sbjct: 324 PIKYKDPGCPTISVNIGGTQVEKALLDLGASVNLLPYSVYKELGLGELKPTSITLSLADR 383

Query: 190 SVRRPRGIVEDVLVKVDKY 246
           SV+ PRG++EDVLV+VDK+
Sbjct: 384 SVKIPRGVIEDVLVQVDKF 402


>ref|XP_003631302.1| PREDICTED: uncharacterized protein LOC100854568 [Vitis vinifera]
          Length = 921

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 46/79 (58%), Positives = 60/79 (75%)
 Frame = +1

Query: 10  PSKKKDPGSFIIPCNIGNLGEEMALADSGASINVMPYTFFRKLGLGEPRPTKMTLQLADR 189
           P K KDPG   I  NIG    E AL D GAS+N++PY+ +++LGLGE +PT +TL LADR
Sbjct: 212 PIKYKDPGCPTISVNIGGTQVEKALLDLGASVNLLPYSVYKELGLGELKPTSITLSLADR 271

Query: 190 SVRRPRGIVEDVLVKVDKY 246
           SV+ PRG++EDVLV+VDK+
Sbjct: 272 SVKIPRGVIEDVLVQVDKF 290


Top