BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00034552
         (334 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001294391.1| ribosomal protein S3 [Dioscorea elephantipes...   175   5e-48
gb|AEH16565.1| ribosomal protein S3 [Dioscorea oppositifolia]         175   5e-48
gb|AFB18590.1| ribosomal protein S3, partial [Sparganium eurycar...   157   1e-42
gb|AEH16563.1| ribosomal protein S3 [Lilium lancifolium]              160   3e-42
gb|AFB18577.1| ribosomal protein S3, partial [Iris virginica]         157   1e-41

>ref|YP_001294391.1| ribosomal protein S3 [Dioscorea elephantipes]
           gi|172048701|sp|A6MMP6.1|RR3_DIOEL RecName: Full=30S
           ribosomal protein S3, chloroplastic
           gi|148668084|gb|ABR01468.1| ribosomal protein S3
           [Dioscorea elephantipes]
          Length = 216

 Score =  175 bits (443), Expect(2) = 5e-48
 Identities = 90/90 (100%), Positives = 90/90 (100%)
 Frame = +2

Query: 65  KKRIDLIQVIIHIGFPNLLIEGRTRGIEELQINVQKEFHFSNRRLKIAITRVEKPYEQAN 244
           KKRIDLIQVIIHIGFPNLLIEGRTRGIEELQINVQKEFHFSNRRLKIAITRVEKPYEQAN
Sbjct: 66  KKRIDLIQVIIHIGFPNLLIEGRTRGIEELQINVQKEFHFSNRRLKIAITRVEKPYEQAN 125

Query: 245 ILAEYIALQLKNRVSFRKAMKKAIELTEQT 334
           ILAEYIALQLKNRVSFRKAMKKAIELTEQT
Sbjct: 126 ILAEYIALQLKNRVSFRKAMKKAIELTEQT 155



 Score = 41.2 bits (95), Expect(2) = 5e-48
 Identities = 19/21 (90%), Positives = 21/21 (100%)
 Frame = +1

Query: 10  KKNRRISSGFEGIARIRIKKK 72
           +KNRRISSGFEGIARIRIKK+
Sbjct: 48  QKNRRISSGFEGIARIRIKKR 68


>gb|AEH16565.1| ribosomal protein S3 [Dioscorea oppositifolia]
          Length = 205

 Score =  175 bits (443), Expect(2) = 5e-48
 Identities = 90/90 (100%), Positives = 90/90 (100%)
 Frame = +2

Query: 65  KKRIDLIQVIIHIGFPNLLIEGRTRGIEELQINVQKEFHFSNRRLKIAITRVEKPYEQAN 244
           KKRIDLIQVIIHIGFPNLLIEGRTRGIEELQINVQKEFHFSNRRLKIAITRVEKPYEQAN
Sbjct: 63  KKRIDLIQVIIHIGFPNLLIEGRTRGIEELQINVQKEFHFSNRRLKIAITRVEKPYEQAN 122

Query: 245 ILAEYIALQLKNRVSFRKAMKKAIELTEQT 334
           ILAEYIALQLKNRVSFRKAMKKAIELTEQT
Sbjct: 123 ILAEYIALQLKNRVSFRKAMKKAIELTEQT 152



 Score = 41.2 bits (95), Expect(2) = 5e-48
 Identities = 19/21 (90%), Positives = 21/21 (100%)
 Frame = +1

Query: 10  KKNRRISSGFEGIARIRIKKK 72
           +KNRRISSGFEGIARIRIKK+
Sbjct: 45  QKNRRISSGFEGIARIRIKKR 65


>gb|AFB18590.1| ribosomal protein S3, partial [Sparganium eurycarpum]
          Length = 217

 Score =  157 bits (398), Expect(2) = 1e-42
 Identities = 82/92 (89%), Positives = 86/92 (93%)
 Frame = +2

Query: 59  E*KKRIDLIQVIIHIGFPNLLIEGRTRGIEELQINVQKEFHFSNRRLKIAITRVEKPYEQ 238
           E KK+IDLIQVII+IGFPNLLIEG+TRGIEELQINVQKEFH  NRRL IAITRVEKPY Q
Sbjct: 64  EIKKKIDLIQVIIYIGFPNLLIEGQTRGIEELQINVQKEFHSVNRRLNIAITRVEKPYAQ 123

Query: 239 ANILAEYIALQLKNRVSFRKAMKKAIELTEQT 334
            NILAEYIALQLKNRV+FRKAMKKAIELTEQT
Sbjct: 124 PNILAEYIALQLKNRVAFRKAMKKAIELTEQT 155



 Score = 40.4 bits (93), Expect(2) = 1e-42
 Identities = 19/21 (90%), Positives = 20/21 (95%)
 Frame = +1

Query: 10  KKNRRISSGFEGIARIRIKKK 72
           +KNRRISSGFEGIARI IKKK
Sbjct: 48  QKNRRISSGFEGIARIEIKKK 68


>gb|AEH16563.1| ribosomal protein S3 [Lilium lancifolium]
          Length = 204

 Score =  160 bits (405), Expect(2) = 3e-42
 Identities = 83/90 (92%), Positives = 85/90 (94%)
 Frame = +2

Query: 65  KKRIDLIQVIIHIGFPNLLIEGRTRGIEELQINVQKEFHFSNRRLKIAITRVEKPYEQAN 244
           KKRIDLIQVIIHIGFPNLLIEGRTRGIE+LQ+NVQKEFH  NRRL IAITRVEKPY Q N
Sbjct: 62  KKRIDLIQVIIHIGFPNLLIEGRTRGIEKLQMNVQKEFHSVNRRLNIAITRVEKPYGQPN 121

Query: 245 ILAEYIALQLKNRVSFRKAMKKAIELTEQT 334
           ILAEYIALQLKNRVSFRKAMKKAIELTEQT
Sbjct: 122 ILAEYIALQLKNRVSFRKAMKKAIELTEQT 151



 Score = 36.6 bits (83), Expect(2) = 3e-42
 Identities = 16/21 (76%), Positives = 20/21 (95%)
 Frame = +1

Query: 10  KKNRRISSGFEGIARIRIKKK 72
           +KN+R SSGFEGIARI+IKK+
Sbjct: 44  QKNKRTSSGFEGIARIQIKKR 64


>gb|AFB18577.1| ribosomal protein S3, partial [Iris virginica]
          Length = 218

 Score =  157 bits (396), Expect(2) = 1e-41
 Identities = 80/92 (86%), Positives = 84/92 (91%)
 Frame = +2

Query: 59  E*KKRIDLIQVIIHIGFPNLLIEGRTRGIEELQINVQKEFHFSNRRLKIAITRVEKPYEQ 238
           E KKRIDLIQVIIHIGFPNLLIEGR RG+EELQ+NVQKEFH  NRRL IAITR+EKPY Q
Sbjct: 64  EIKKRIDLIQVIIHIGFPNLLIEGRARGVEELQMNVQKEFHSVNRRLNIAITRIEKPYGQ 123

Query: 239 ANILAEYIALQLKNRVSFRKAMKKAIELTEQT 334
            NILAEY+ALQLKNRVSFRKAMKK IELTEQT
Sbjct: 124 PNILAEYMALQLKNRVSFRKAMKKVIELTEQT 155



 Score = 38.1 bits (87), Expect(2) = 1e-41
 Identities = 17/21 (80%), Positives = 20/21 (95%)
 Frame = +1

Query: 10  KKNRRISSGFEGIARIRIKKK 72
           +KNR+ISSGFEGIARI IKK+
Sbjct: 48  QKNRKISSGFEGIARIEIKKR 68