BLASTX nr result

ID: Dioscorea21_contig00034246 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00034246
         (276 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002299892.1| predicted protein [Populus trichocarpa] gi|2...    59   5e-07
ref|XP_004169610.1| PREDICTED: uncharacterized LOC101205220 [Cuc...    56   3e-06
ref|XP_004149057.1| PREDICTED: LOW QUALITY PROTEIN: uncharacteri...    56   3e-06
ref|NP_200787.1| uncharacterized protein [Arabidopsis thaliana] ...    55   8e-06

>ref|XP_002299892.1| predicted protein [Populus trichocarpa] gi|222847150|gb|EEE84697.1|
           predicted protein [Populus trichocarpa]
          Length = 445

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 40/84 (47%), Positives = 52/84 (61%), Gaps = 17/84 (20%)
 Frame = -1

Query: 207 ETLETLMKSDGRGIPIATED-----LDRTVGSSVSGRMRASAVLINLISCGSISVKD--- 52
           ETLE+LMK+DGR I  A+ +     L +TVG+   GRM+AS VL+ LISCGSIS +D   
Sbjct: 248 ETLESLMKADGRVILGASGEGSGLNLSQTVGNC--GRMKASTVLMQLISCGSISFRDCGA 305

Query: 51  ---------LVTAQCKRRVPRVGS 7
                    L+T Q K R+PR G+
Sbjct: 306 TAVKEQGLSLITGQYKGRLPRGGN 329


>ref|XP_004169610.1| PREDICTED: uncharacterized LOC101205220 [Cucumis sativus]
          Length = 440

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 33/53 (62%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
 Frame = -1

Query: 207 ETLETLMKSDGRGIPIATEDLDRTVGSSV-SGRMRASAVLINLISCGSISVKD 52
           ETLE+LMK+DGR I       +RT   S  SGRM+ASAVL+ LISCGSIS KD
Sbjct: 252 ETLESLMKADGRLIISEGAKPNRTTAESFPSGRMKASAVLMQLISCGSISFKD 304


>ref|XP_004149057.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
           LOC101205220, partial [Cucumis sativus]
          Length = 438

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 33/53 (62%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
 Frame = -1

Query: 207 ETLETLMKSDGRGIPIATEDLDRTVGSSV-SGRMRASAVLINLISCGSISVKD 52
           ETLE+LMK+DGR I       +RT   S  SGRM+ASAVL+ LISCGSIS KD
Sbjct: 250 ETLESLMKADGRLIISEGAKPNRTTAESFPSGRMKASAVLMQLISCGSISFKD 302


>ref|NP_200787.1| uncharacterized protein [Arabidopsis thaliana]
           gi|9757899|dbj|BAB08346.1| unnamed protein product
           [Arabidopsis thaliana] gi|20260480|gb|AAM13138.1|
           unknown protein [Arabidopsis thaliana]
           gi|30725706|gb|AAP37875.1| At5g59790 [Arabidopsis
           thaliana] gi|110741012|dbj|BAE98600.1| hypothetical
           protein [Arabidopsis thaliana]
           gi|332009851|gb|AED97234.1| uncharacterized protein
           [Arabidopsis thaliana]
          Length = 423

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 32/54 (59%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
 Frame = -1

Query: 207 ETLETLMKSDGRGI--PIATEDLDRTVGSSVSGRMRASAVLINLISCGSISVKD 52
           ETLE L+K+DGR I  P  +    RTV S  SGRMRASAVL+ LISCG++S K+
Sbjct: 257 ETLENLIKADGRLILRPSESSTDHRTVESLSSGRMRASAVLMQLISCGTMSFKE 310


Top