BLASTX nr result

ID: Dioscorea21_contig00034183 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00034183
         (338 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004156879.1| PREDICTED: pentatricopeptide repeat-containi...    89   4e-16
ref|XP_004152353.1| PREDICTED: pentatricopeptide repeat-containi...    89   4e-16
ref|XP_002305285.1| predicted protein [Populus trichocarpa] gi|2...    87   1e-15
ref|XP_003538658.1| PREDICTED: pentatricopeptide repeat-containi...    86   2e-15
ref|XP_003516732.1| PREDICTED: pentatricopeptide repeat-containi...    84   9e-15

>ref|XP_004156879.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Cucumis sativus]
          Length = 529

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 42/85 (49%), Positives = 59/85 (69%)
 Frame = -1

Query: 263 TMASLAPSPSLTDVVNDLCRILSDRRAAHHELEPALLPFSPHLSSDLVDHVLRRCRNLSL 84
           T A     P+L  +V+++ RILSDRR  HH+LE  L  FS ++S+DLV+ VL+RC+N++ 
Sbjct: 37  TEARAGSDPTLPFLVSEISRILSDRRNPHHDLEVGLSSFSSNVSTDLVEQVLKRCKNIAF 96

Query: 83  SSHRFYLWALRHPSFRPSPHSLSIL 9
           S+HRF+LWA R P F PS  S  I+
Sbjct: 97  SAHRFFLWAKRIPGFEPSDDSYHIV 121


>ref|XP_004152353.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Cucumis sativus]
          Length = 529

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 42/85 (49%), Positives = 59/85 (69%)
 Frame = -1

Query: 263 TMASLAPSPSLTDVVNDLCRILSDRRAAHHELEPALLPFSPHLSSDLVDHVLRRCRNLSL 84
           T A     P+L  +V+++ RILSDRR  HH+LE  L  FS ++S+DLV+ VL+RC+N++ 
Sbjct: 37  TEARAGSDPTLPFLVSEISRILSDRRNPHHDLEVGLSSFSSNVSTDLVEQVLKRCKNIAF 96

Query: 83  SSHRFYLWALRHPSFRPSPHSLSIL 9
           S+HRF+LWA R P F PS  S  I+
Sbjct: 97  SAHRFFLWAKRIPGFEPSDDSYHIV 121


>ref|XP_002305285.1| predicted protein [Populus trichocarpa] gi|222848249|gb|EEE85796.1|
           predicted protein [Populus trichocarpa]
          Length = 523

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 42/87 (48%), Positives = 58/87 (66%)
 Frame = -1

Query: 263 TMASLAPSPSLTDVVNDLCRILSDRRAAHHELEPALLPFSPHLSSDLVDHVLRRCRNLSL 84
           T+  L   P L  +VN++ RILSD+R  HH+LE +L  FS  +S++LV+ VL+RC+NL  
Sbjct: 34  TLTPLNQIPPLPGLVNEISRILSDQRNPHHDLETSLNAFSSEISTNLVEQVLKRCKNLGF 93

Query: 83  SSHRFYLWALRHPSFRPSPHSLSILAS 3
           S+HRF+LWA R P F  S  S  IL +
Sbjct: 94  SAHRFFLWAKRIPGFEHSEESYHILVN 120


>ref|XP_003538658.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Glycine max]
          Length = 523

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 41/77 (53%), Positives = 54/77 (70%)
 Frame = -1

Query: 239 PSLTDVVNDLCRILSDRRAAHHELEPALLPFSPHLSSDLVDHVLRRCRNLSLSSHRFYLW 60
           P L D+VN++ R+LSD R  HH+LE +L PFS  +S++LVD VL+RC NL  S+HRF+LW
Sbjct: 41  PLLPDLVNEISRLLSDHRYPHHDLELSLNPFSAQISTNLVDQVLKRCNNLGFSAHRFFLW 100

Query: 59  ALRHPSFRPSPHSLSIL 9
           A   P F+ S  S  IL
Sbjct: 101 AKSIPGFQHSVMSFHIL 117


>ref|XP_003516732.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Glycine max]
          Length = 523

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 40/75 (53%), Positives = 54/75 (72%)
 Frame = -1

Query: 233 LTDVVNDLCRILSDRRAAHHELEPALLPFSPHLSSDLVDHVLRRCRNLSLSSHRFYLWAL 54
           L D+VN++ R+LSD R  HH+LE +L PFS  LS++LV+ VL+RC+NL  S+HRF+LWA 
Sbjct: 43  LPDLVNEISRLLSDHRYPHHDLELSLNPFSAQLSTNLVEQVLKRCKNLGFSAHRFFLWAK 102

Query: 53  RHPSFRPSPHSLSIL 9
             P F+ S  S  IL
Sbjct: 103 SIPGFQHSVMSFHIL 117


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