BLASTX nr result

ID: Dioscorea21_contig00034013 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00034013
         (412 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265789.1| PREDICTED: DNA polymerase alpha subunit B [V...   207   9e-52
ref|XP_002438164.1| hypothetical protein SORBIDRAFT_10g009040 [S...   202   2e-50
ref|XP_003578733.1| PREDICTED: DNA polymerase alpha subunit B-li...   202   3e-50
dbj|BAK05466.1| predicted protein [Hordeum vulgare subsp. vulgare]    200   1e-49
gb|EEC69071.1| hypothetical protein OsI_37935 [Oryza sativa Indi...   200   1e-49

>ref|XP_002265789.1| PREDICTED: DNA polymerase alpha subunit B [Vitis vinifera]
           gi|297738371|emb|CBI27572.3| unnamed protein product
           [Vitis vinifera]
          Length = 623

 Score =  207 bits (526), Expect = 9e-52
 Identities = 98/130 (75%), Positives = 115/130 (88%)
 Frame = -1

Query: 397 LSLVAAAGPFTTTDNLLFEPLTELLSYASRKQSQLLLLMGPFLDSEHPEIKKGTVDQSFD 218
           LSL+ AAGPFTTTDNLLFEPLTELL+YA RK  QLL+L+GPF+DSEHPEI+KGTVD+SFD
Sbjct: 358 LSLMVAAGPFTTTDNLLFEPLTELLAYARRKMPQLLILLGPFVDSEHPEIRKGTVDRSFD 417

Query: 217 EIFHIEVLRKLQDYIEFMGPATRVILVPSIRDANHGFVFPQPAFDIHLPDNIRHQIICLS 38
           EIFH+E+LR+LQDY+E+MG A RVILVPSIRDANH FVFPQPAF IH PD ++HQI  L+
Sbjct: 418 EIFHLEILRRLQDYVEYMGSAARVILVPSIRDANHDFVFPQPAFSIHPPD-LKHQITSLT 476

Query: 37  NPSLVSANEI 8
           NP +  ANE+
Sbjct: 477 NPGMFDANEV 486


>ref|XP_002438164.1| hypothetical protein SORBIDRAFT_10g009040 [Sorghum bicolor]
           gi|241916387|gb|EER89531.1| hypothetical protein
           SORBIDRAFT_10g009040 [Sorghum bicolor]
          Length = 626

 Score =  202 bits (515), Expect = 2e-50
 Identities = 93/133 (69%), Positives = 115/133 (86%)
 Frame = -1

Query: 406 SKRLSLVAAAGPFTTTDNLLFEPLTELLSYASRKQSQLLLLMGPFLDSEHPEIKKGTVDQ 227
           S+ LS V AAGP+TTTDNLLFEPL ELLSYA RKQ QLL+LMGPF+DS+HP+IKKGTVDQ
Sbjct: 359 SRALSSVIAAGPYTTTDNLLFEPLQELLSYACRKQPQLLILMGPFIDSDHPDIKKGTVDQ 418

Query: 226 SFDEIFHIEVLRKLQDYIEFMGPATRVILVPSIRDANHGFVFPQPAFDIHLPDNIRHQII 47
           SF +IFH E+LRK+QD+ +++G   RVIL+PS+RDA+H FVFPQPAFD++ P++I HQI 
Sbjct: 419 SFHDIFHFEILRKIQDFTQYLGNTVRVILIPSVRDAHHDFVFPQPAFDLNFPEDITHQIT 478

Query: 46  CLSNPSLVSANEI 8
           CL+NP L S+NEI
Sbjct: 479 CLANPCLFSSNEI 491


>ref|XP_003578733.1| PREDICTED: DNA polymerase alpha subunit B-like [Brachypodium
           distachyon]
          Length = 625

 Score =  202 bits (513), Expect = 3e-50
 Identities = 94/133 (70%), Positives = 117/133 (87%)
 Frame = -1

Query: 406 SKRLSLVAAAGPFTTTDNLLFEPLTELLSYASRKQSQLLLLMGPFLDSEHPEIKKGTVDQ 227
           S+ LS V AAGP+TTTDNLLFEPL ELLSYA RKQ QLL+LMGPF+DS+HP+IK+GTVDQ
Sbjct: 358 SRVLSSVIAAGPYTTTDNLLFEPLQELLSYACRKQPQLLILMGPFIDSDHPDIKRGTVDQ 417

Query: 226 SFDEIFHIEVLRKLQDYIEFMGPATRVILVPSIRDANHGFVFPQPAFDIHLPDNIRHQII 47
           SF +IFH E+LRKLQD+ +++G + RVILVPS+RDA+H  VFPQPAFD++LP++I HQI 
Sbjct: 418 SFHDIFHFEILRKLQDFTQYLGHSVRVILVPSVRDAHHDTVFPQPAFDLNLPEDITHQIT 477

Query: 46  CLSNPSLVSANEI 8
           CL+NPS+ S+NEI
Sbjct: 478 CLANPSIFSSNEI 490


>dbj|BAK05466.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 625

 Score =  200 bits (508), Expect = 1e-49
 Identities = 97/133 (72%), Positives = 113/133 (84%)
 Frame = -1

Query: 406 SKRLSLVAAAGPFTTTDNLLFEPLTELLSYASRKQSQLLLLMGPFLDSEHPEIKKGTVDQ 227
           S+ LS V AAGPFTTTDNLLFEPL ELLSYA RKQ QLL+LMGPF+DS+HPEIKKGT DQ
Sbjct: 358 SRVLSSVIAAGPFTTTDNLLFEPLQELLSYACRKQPQLLILMGPFIDSDHPEIKKGTSDQ 417

Query: 226 SFDEIFHIEVLRKLQDYIEFMGPATRVILVPSIRDANHGFVFPQPAFDIHLPDNIRHQII 47
           SF +IF  E+LRKLQD+ +++G   RVILVPS+RDA+H  VFPQPAFD+HLP++I  QI 
Sbjct: 418 SFHDIFRFEILRKLQDFTQYLGYNVRVILVPSVRDAHHDTVFPQPAFDLHLPEDITQQIT 477

Query: 46  CLSNPSLVSANEI 8
           CLSNPSL S+NEI
Sbjct: 478 CLSNPSLFSSNEI 490


>gb|EEC69071.1| hypothetical protein OsI_37935 [Oryza sativa Indica Group]
          Length = 625

 Score =  200 bits (508), Expect = 1e-49
 Identities = 94/133 (70%), Positives = 115/133 (86%)
 Frame = -1

Query: 406 SKRLSLVAAAGPFTTTDNLLFEPLTELLSYASRKQSQLLLLMGPFLDSEHPEIKKGTVDQ 227
           S+ LS V AAGP+TT+DNLLFEPL EL+SYASRKQ QLL+LMGPF+DS+HPEIKKG VDQ
Sbjct: 358 SRVLSSVIAAGPYTTSDNLLFEPLQELISYASRKQPQLLILMGPFIDSDHPEIKKGAVDQ 417

Query: 226 SFDEIFHIEVLRKLQDYIEFMGPATRVILVPSIRDANHGFVFPQPAFDIHLPDNIRHQII 47
           SF +IF  E+LRKLQD+ +++G   RVIL+PS+RDA+H FVFPQPAFD++LP++I HQI 
Sbjct: 418 SFQDIFLFEILRKLQDFTQYLGHNVRVILIPSVRDAHHDFVFPQPAFDLNLPEDITHQIT 477

Query: 46  CLSNPSLVSANEI 8
           CL+NPSL S NEI
Sbjct: 478 CLANPSLFSCNEI 490


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