BLASTX nr result

ID: Dioscorea21_contig00033463 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00033463
         (583 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265876.1| PREDICTED: pentatricopeptide repeat-containi...   151   9e-35
emb|CAN79718.1| hypothetical protein VITISV_012741 [Vitis vinifera]   151   9e-35
ref|XP_002511816.1| pentatricopeptide repeat-containing protein,...   145   4e-33
ref|XP_002331436.1| predicted protein [Populus trichocarpa] gi|2...   140   2e-31
gb|ABA18097.1| pentatricopeptide repeat protein [Olimarabidopsis...   132   6e-29

>ref|XP_002265876.1| PREDICTED: pentatricopeptide repeat-containing protein At3g42630
           [Vitis vinifera] gi|297736023|emb|CBI24061.3| unnamed
           protein product [Vitis vinifera]
          Length = 423

 Score =  151 bits (381), Expect = 9e-35
 Identities = 71/94 (75%), Positives = 80/94 (85%)
 Frame = +1

Query: 4   KVTPDLVTFGCIVDAYLDRRLGRNLSFALNKMDVESFPLISTDFMVFEVMGKGDFHSSSE 183
           KV  DLVT+GC+VDAYLDRRLG+NL FAL KM+++  PL+STD  VFEV+GKGDFHSSSE
Sbjct: 330 KVVADLVTYGCVVDAYLDRRLGKNLDFALKKMNMDDSPLVSTDHFVFEVLGKGDFHSSSE 389

Query: 184 ALLESLRIREWTYSKLIAIYLKKKYRSNQIFWNY 285
           A LES R  +WTY KLIA YLKKKYRSNQIFWNY
Sbjct: 390 AFLESKRNGKWTYRKLIATYLKKKYRSNQIFWNY 423


>emb|CAN79718.1| hypothetical protein VITISV_012741 [Vitis vinifera]
          Length = 446

 Score =  151 bits (381), Expect = 9e-35
 Identities = 71/94 (75%), Positives = 80/94 (85%)
 Frame = +1

Query: 4   KVTPDLVTFGCIVDAYLDRRLGRNLSFALNKMDVESFPLISTDFMVFEVMGKGDFHSSSE 183
           KV  DLVT+GC+VDAYLDRRLG+NL FAL KM+++  PL+STD  VFEV+GKGDFHSSSE
Sbjct: 353 KVVADLVTYGCVVDAYLDRRLGKNLDFALKKMNMDDSPLVSTDHFVFEVLGKGDFHSSSE 412

Query: 184 ALLESLRIREWTYSKLIAIYLKKKYRSNQIFWNY 285
           A LES R  +WTY KLIA YLKKKYRSNQIFWNY
Sbjct: 413 AFLESKRNGKWTYRKLIATYLKKKYRSNQIFWNY 446


>ref|XP_002511816.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548996|gb|EEF50485.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 427

 Score =  145 bits (367), Expect = 4e-33
 Identities = 65/95 (68%), Positives = 83/95 (87%)
 Frame = +1

Query: 1   EKVTPDLVTFGCIVDAYLDRRLGRNLSFALNKMDVESFPLISTDFMVFEVMGKGDFHSSS 180
           EKV+PD+VT+GCIVDAYLDRRLG+NL FA+ KM+++  P++ TD  VFEV+GKGDFHSS+
Sbjct: 333 EKVSPDIVTYGCIVDAYLDRRLGKNLDFAIKKMNLDGSPVLLTDPFVFEVLGKGDFHSSA 392

Query: 181 EALLESLRIREWTYSKLIAIYLKKKYRSNQIFWNY 285
           EA LE  R R+WTY +L++IYL+K+YRSNQIFWNY
Sbjct: 393 EAFLEFKRQRKWTYRELVSIYLRKQYRSNQIFWNY 427


>ref|XP_002331436.1| predicted protein [Populus trichocarpa] gi|222873650|gb|EEF10781.1|
           predicted protein [Populus trichocarpa]
          Length = 428

 Score =  140 bits (352), Expect = 2e-31
 Identities = 66/95 (69%), Positives = 79/95 (83%)
 Frame = +1

Query: 1   EKVTPDLVTFGCIVDAYLDRRLGRNLSFALNKMDVESFPLISTDFMVFEVMGKGDFHSSS 180
           +KV PDLVT+GCIVDAYLDRRL RNL FAL+KM V++ P++STD  VFEV GKGDFHSSS
Sbjct: 334 DKVAPDLVTYGCIVDAYLDRRLVRNLEFALSKMHVDNSPVLSTDPFVFEVFGKGDFHSSS 393

Query: 181 EALLESLRIREWTYSKLIAIYLKKKYRSNQIFWNY 285
           EA +E  R R+WTY +LI IYL+K++RS  IFWNY
Sbjct: 394 EAFMEFKRQRKWTYRELIKIYLRKQHRSKHIFWNY 428


>gb|ABA18097.1| pentatricopeptide repeat protein [Olimarabidopsis pumila]
          Length = 424

 Score =  132 bits (331), Expect = 6e-29
 Identities = 59/93 (63%), Positives = 74/93 (79%)
 Frame = +1

Query: 7   VTPDLVTFGCIVDAYLDRRLGRNLSFALNKMDVESFPLISTDFMVFEVMGKGDFHSSSEA 186
           + PDLVTFGC+VDAY+DRRL RNL F  N+M+++  P++ TD +VFEV+GKGDFH SSEA
Sbjct: 332 IVPDLVTFGCVVDAYMDRRLARNLEFVYNRMNLDDSPVVLTDPLVFEVLGKGDFHLSSEA 391

Query: 187 LLESLRIREWTYSKLIAIYLKKKYRSNQIFWNY 285
           +LE     +WTY KLI +YLKKK R +QIFWNY
Sbjct: 392 VLEFSPREKWTYRKLIGVYLKKKLRRDQIFWNY 424


Top