BLASTX nr result
ID: Dioscorea21_contig00033420
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00033420
(356 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat... 104 9e-21
ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containi... 102 3e-20
ref|XP_002277430.1| PREDICTED: pentatricopeptide repeat-containi... 101 6e-20
ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat... 101 7e-20
emb|CBI36131.3| unnamed protein product [Vitis vinifera] 100 9e-20
>ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1291
Score = 104 bits (259), Expect = 9e-21
Identities = 50/117 (42%), Positives = 75/117 (64%)
Frame = +1
Query: 4 ASLLSRRVPCPSTLLFNALIRGHSLFASPLETLDIFRQMQSHGLPPDHFSFPFALKCCAE 183
AS++ +P P + L+N +IRG + L +L+++ +M GL PD F+FPFALK CA
Sbjct: 771 ASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAG 830
Query: 184 LQFLPLGQSLHSQCLRFGLEKDVYVGSSLVNMYAKCGELLAAHHLFDAMLVRDISSW 354
L L G+ +H + G D++V ++LV+MYAKCG++ AA +FD M VRD+ SW
Sbjct: 831 LSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSW 887
Score = 72.4 bits (176), Expect = 4e-11
Identities = 38/114 (33%), Positives = 61/114 (53%)
Frame = +1
Query: 13 LSRRVPCPSTLLFNALIRGHSLFASPLETLDIFRQMQSHGLPPDHFSFPFALKCCAELQF 192
L +R+P + + AL+ G++ +++ +FR M S G+ PD + L +EL
Sbjct: 364 LFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGI 423
Query: 193 LPLGQSLHSQCLRFGLEKDVYVGSSLVNMYAKCGELLAAHHLFDAMLVRDISSW 354
LH +R G +V+VG+SL+ +Y+KCG L A LF M+VRD+ W
Sbjct: 424 FQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIW 477
Score = 65.9 bits (159), Expect = 3e-09
Identities = 39/111 (35%), Positives = 62/111 (55%), Gaps = 2/111 (1%)
Frame = +1
Query: 28 PCPSTLLFNALIRGHSLFASPLETLDIFRQMQ-SHGLPPDHFSFPFALKCCAELQFLPLG 204
P P+ L+N+ +R + ETL +F M + G PD+F+ P ALK CA L+ L LG
Sbjct: 63 PHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELG 122
Query: 205 QSLHSQCLRFG-LEKDVYVGSSLVNMYAKCGELLAAHHLFDAMLVRDISSW 354
+ +H + + D++VGS+LV +Y+KCG++ A +F+ D W
Sbjct: 123 KVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLW 173
Score = 63.5 bits (153), Expect = 2e-08
Identities = 36/117 (30%), Positives = 60/117 (51%)
Frame = +1
Query: 4 ASLLSRRVPCPSTLLFNALIRGHSLFASPLETLDIFRQMQSHGLPPDHFSFPFALKCCAE 183
A L+ ++ + + ++I G++ ETL F M+S G+ P+ S L C
Sbjct: 872 ARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGN 931
Query: 184 LQFLPLGQSLHSQCLRFGLEKDVYVGSSLVNMYAKCGELLAAHHLFDAMLVRDISSW 354
L L G+ HS ++ G E D+ V +++++MY+KCG L A LFD +D+ W
Sbjct: 932 LGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCW 988
>ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 648
Score = 102 bits (254), Expect = 3e-20
Identities = 50/117 (42%), Positives = 75/117 (64%)
Frame = +1
Query: 4 ASLLSRRVPCPSTLLFNALIRGHSLFASPLETLDIFRQMQSHGLPPDHFSFPFALKCCAE 183
A LL R+P + L+N LIRG++ + ++ QM +GL PD+F+FPF LK CA
Sbjct: 129 ARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAA 188
Query: 184 LQFLPLGQSLHSQCLRFGLEKDVYVGSSLVNMYAKCGELLAAHHLFDAMLVRDISSW 354
L + G+ +H ++ G EKDV+VG++L++MYAKCG + +A +FD +LVRD W
Sbjct: 189 LSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLW 245
Score = 58.2 bits (139), Expect = 7e-07
Identities = 33/104 (31%), Positives = 54/104 (51%)
Frame = +1
Query: 43 LLFNALIRGHSLFASPLETLDIFRQMQSHGLPPDHFSFPFALKCCAELQFLPLGQSLHSQ 222
+L+N+++ +S P L + +M GL P + A+ A+ LP G+ LH
Sbjct: 243 VLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGL 302
Query: 223 CLRFGLEKDVYVGSSLVNMYAKCGELLAAHHLFDAMLVRDISSW 354
R E V ++LV+MYAKCG + A +LF+ + V+ + SW
Sbjct: 303 SWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSW 346
>ref|XP_002277430.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 500
Score = 101 bits (252), Expect = 6e-20
Identities = 51/117 (43%), Positives = 71/117 (60%)
Frame = +1
Query: 4 ASLLSRRVPCPSTLLFNALIRGHSLFASPLETLDIFRQMQSHGLPPDHFSFPFALKCCAE 183
A LL + PST L+N + R ++ +PL L + R M HG PPD ++FPF LK C+
Sbjct: 41 ARLLFDAIHHPSTYLYNTMFRVYAASPTPLHALLLHRHMLRHGPPPDTYTFPFLLKACSA 100
Query: 184 LQFLPLGQSLHSQCLRFGLEKDVYVGSSLVNMYAKCGELLAAHHLFDAMLVRDISSW 354
L LP GQ LH Q L+FGL V+V +SL+++Y + +A +FD M RDI+SW
Sbjct: 101 LAHLPKGQELHCQALKFGLGGHVFVENSLIHLYGSNSGMDSARRVFDGMGYRDIASW 157
>ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 689
Score = 101 bits (251), Expect = 7e-20
Identities = 51/114 (44%), Positives = 73/114 (64%), Gaps = 3/114 (2%)
Frame = +1
Query: 22 RVPCPSTLLFNALIRG---HSLFASPLETLDIFRQMQSHGLPPDHFSFPFALKCCAELQF 192
R+ PS+LL+N++IR H L+ + +M GL D+F+ PF LK CA+L
Sbjct: 137 RIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSR 196
Query: 193 LPLGQSLHSQCLRFGLEKDVYVGSSLVNMYAKCGELLAAHHLFDAMLVRDISSW 354
+ +G+ +H Q LR GLE D YVG+SL++MY KCG + A LFD M+VRD++SW
Sbjct: 197 VCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASW 250
>emb|CBI36131.3| unnamed protein product [Vitis vinifera]
Length = 550
Score = 100 bits (250), Expect = 9e-20
Identities = 51/120 (42%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
Frame = +1
Query: 4 ASLLSRRVPCPSTLLFNALIRGHSLFASPLETLDIFRQMQSHGLPPDHFSFPFALKCCAE 183
A LL R+P + L+N LIRG++ + ++ QM +GL PD+F+FPF LK CA
Sbjct: 129 ARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAA 188
Query: 184 LQFLPLGQSLHSQCLRFGLEKDVYVGSSLVNMYAKCGELLAAHHLFDAMLVRD---ISSW 354
L + G+ +H ++ G EKDV+VG++L++MYAKCG + +A +FD +LVRD + SW
Sbjct: 189 LSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSW 248