BLASTX nr result

ID: Dioscorea21_contig00033076 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00033076
         (510 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278166.1| PREDICTED: pentatricopeptide repeat-containi...   125   4e-27
emb|CAN82226.1| hypothetical protein VITISV_011875 [Vitis vinifera]   125   4e-27
ref|XP_002303738.1| predicted protein [Populus trichocarpa] gi|2...   121   5e-26
ref|XP_004137884.1| PREDICTED: pentatricopeptide repeat-containi...   119   3e-25
ref|XP_002324235.1| predicted protein [Populus trichocarpa] gi|2...   108   5e-22

>ref|XP_002278166.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 662

 Score =  125 bits (314), Expect = 4e-27
 Identities = 57/86 (66%), Positives = 68/86 (79%)
 Frame = -3

Query: 508 DFSLHNVDQERGCIVDDHSEMIAIAFGLISTQKRITLRVTKNLPVCRNCHASAKMISKIV 329
           DFSLH+VD+ER C+   HSE++A +FGLISTQ   T+RVTKNL +C NCH SAK ISKIV
Sbjct: 577 DFSLHDVDEERECVPIGHSELLATSFGLISTQAGATIRVTKNLRMCGNCHDSAKAISKIV 636

Query: 328 NREILLKDPQRFHHFKNGSCSCKDIW 251
            REI++KDP  FHHFK+G CSC D W
Sbjct: 637 EREIIIKDPSCFHHFKDGFCSCGDFW 662


>emb|CAN82226.1| hypothetical protein VITISV_011875 [Vitis vinifera]
          Length = 734

 Score =  125 bits (314), Expect = 4e-27
 Identities = 57/86 (66%), Positives = 68/86 (79%)
 Frame = -3

Query: 508 DFSLHNVDQERGCIVDDHSEMIAIAFGLISTQKRITLRVTKNLPVCRNCHASAKMISKIV 329
           DFSLH+VD+ER C+   HSE++A +FGLISTQ   T+RVTKNL +C NCH SAK ISKIV
Sbjct: 649 DFSLHDVDEERECVPIGHSELLATSFGLISTQAGATIRVTKNLRMCGNCHDSAKAISKIV 708

Query: 328 NREILLKDPQRFHHFKNGSCSCKDIW 251
            REI++KDP  FHHFK+G CSC D W
Sbjct: 709 EREIIIKDPSCFHHFKDGFCSCGDFW 734


>ref|XP_002303738.1| predicted protein [Populus trichocarpa] gi|222841170|gb|EEE78717.1|
           predicted protein [Populus trichocarpa]
          Length = 663

 Score =  121 bits (304), Expect = 5e-26
 Identities = 53/85 (62%), Positives = 65/85 (76%)
 Frame = -3

Query: 505 FSLHNVDQERGCIVDDHSEMIAIAFGLISTQKRITLRVTKNLPVCRNCHASAKMISKIVN 326
           FS H VD ER CI   HSEM+A++FGLI TQ   T+R+TKNL +CR CH S K++SKIV 
Sbjct: 579 FSFHGVDAERECIQIGHSEMLALSFGLICTQPGATIRITKNLRMCRGCHDSTKLVSKIVE 638

Query: 325 REILLKDPQRFHHFKNGSCSCKDIW 251
           REI++KDP  FHHFK+G CSC+D W
Sbjct: 639 REIIIKDPNCFHHFKDGFCSCRDFW 663


>ref|XP_004137884.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 629

 Score =  119 bits (298), Expect = 3e-25
 Identities = 53/84 (63%), Positives = 69/84 (82%)
 Frame = -3

Query: 508 DFSLHNVDQERGCIVDDHSEMIAIAFGLISTQKRITLRVTKNLPVCRNCHASAKMISKIV 329
           DFSLH+VD+ER C+   HSE++AI+FGLIST+   T+R+TKNL VC +CH SAK ISK+V
Sbjct: 544 DFSLHDVDEERECVPIGHSELLAISFGLISTEAGRTIRITKNLRVCHSCHESAKFISKMV 603

Query: 328 NREILLKDPQRFHHFKNGSCSCKD 257
            REI++KDP  FHHFK+G CSC++
Sbjct: 604 GREIIVKDPYVFHHFKDGCCSCEN 627


>ref|XP_002324235.1| predicted protein [Populus trichocarpa] gi|222865669|gb|EEF02800.1|
           predicted protein [Populus trichocarpa]
          Length = 736

 Score =  108 bits (270), Expect = 5e-22
 Identities = 49/84 (58%), Positives = 66/84 (78%), Gaps = 1/84 (1%)
 Frame = -3

Query: 499 LHNVDQE-RGCIVDDHSEMIAIAFGLISTQKRITLRVTKNLPVCRNCHASAKMISKIVNR 323
           L+++D+E +  ++  HSE +AIAFGLIST+   T+R+ KNL VC NCH++ K+ISKI NR
Sbjct: 653 LYDMDEEWKEGVLSHHSEKLAIAFGLISTKPGTTIRIMKNLRVCGNCHSATKLISKIFNR 712

Query: 322 EILLKDPQRFHHFKNGSCSCKDIW 251
           EI+ +D  RFHHFK+GSCSCKD W
Sbjct: 713 EIIARDRNRFHHFKDGSCSCKDYW 736


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