BLASTX nr result

ID: Dioscorea21_contig00032768 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00032768
         (354 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABF94602.1| expressed protein [Oryza sativa Japonica Group] g...   158   4e-37
ref|NP_001168260.1| uncharacterized protein LOC100382024 [Zea ma...   155   4e-36
ref|XP_002468297.1| hypothetical protein SORBIDRAFT_01g043190 [S...   154   9e-36
ref|XP_003558514.1| PREDICTED: pentatricopeptide repeat-containi...   153   2e-35
ref|XP_004169658.1| PREDICTED: pentatricopeptide repeat-containi...   146   2e-33

>gb|ABF94602.1| expressed protein [Oryza sativa Japonica Group]
           gi|125585367|gb|EAZ26031.1| hypothetical protein
           OsJ_09884 [Oryza sativa Japonica Group]
          Length = 582

 Score =  158 bits (400), Expect = 4e-37
 Identities = 71/107 (66%), Positives = 86/107 (80%)
 Frame = -3

Query: 346 SYNHVIFTCEAARNPKVALQVYQRMIHNKCTPDLFTHLSLVRSCVWGSHWKEAEDILESV 167
           SYNHVI  CE AR PKVAL+VY+RM H  C+PD FTHLS++R+C+WGS W E EDILE V
Sbjct: 470 SYNHVIGACEVARMPKVALKVYRRMTHRGCSPDTFTHLSVIRACIWGSLWNEVEDILEEV 529

Query: 166 APNASIYNTIIHGLLLRGKTMMAKKWYDRMCEIGFKPDGKTRALMLQ 26
           AP++S+YNT+IHGL LRGK  +A+K Y +M  IG KPDGKTR+ MLQ
Sbjct: 530 APDSSVYNTVIHGLCLRGKIRLARKVYTKMRSIGLKPDGKTRSFMLQ 576


>ref|NP_001168260.1| uncharacterized protein LOC100382024 [Zea mays]
           gi|223947083|gb|ACN27625.1| unknown [Zea mays]
           gi|414865479|tpg|DAA44036.1| TPA: hypothetical protein
           ZEAMMB73_641935 [Zea mays]
          Length = 581

 Score =  155 bits (391), Expect = 4e-36
 Identities = 71/107 (66%), Positives = 85/107 (79%)
 Frame = -3

Query: 346 SYNHVIFTCEAARNPKVALQVYQRMIHNKCTPDLFTHLSLVRSCVWGSHWKEAEDILESV 167
           SYNHVI  CE A  PKVAL+VYQRMI+ +C+PD FTHLS++R+C+WGS W E EDILE V
Sbjct: 470 SYNHVIGACEVASKPKVALKVYQRMINQRCSPDTFTHLSVIRACIWGSLWTEVEDILEEV 529

Query: 166 APNASIYNTIIHGLLLRGKTMMAKKWYDRMCEIGFKPDGKTRALMLQ 26
           AP++SIYN +IHGL LRGKT +A K Y +M  +G  PDGKTRA MLQ
Sbjct: 530 APDSSIYNAVIHGLCLRGKTGLANKVYAKMRSMGLVPDGKTRAFMLQ 576


>ref|XP_002468297.1| hypothetical protein SORBIDRAFT_01g043190 [Sorghum bicolor]
           gi|241922151|gb|EER95295.1| hypothetical protein
           SORBIDRAFT_01g043190 [Sorghum bicolor]
          Length = 581

 Score =  154 bits (388), Expect = 9e-36
 Identities = 71/107 (66%), Positives = 84/107 (78%)
 Frame = -3

Query: 346 SYNHVIFTCEAARNPKVALQVYQRMIHNKCTPDLFTHLSLVRSCVWGSHWKEAEDILESV 167
           SYNHVI  CE A  PKVAL+VYQRMI+ +C+PD FTHLS++R+C+WGS W E EDILE V
Sbjct: 470 SYNHVIGACEFASEPKVALKVYQRMINRRCSPDTFTHLSVIRACIWGSLWTEVEDILEEV 529

Query: 166 APNASIYNTIIHGLLLRGKTMMAKKWYDRMCEIGFKPDGKTRALMLQ 26
           APN+SIYN +IHGL LRGK  +A + Y +M  IG  PDGKTRA MLQ
Sbjct: 530 APNSSIYNAVIHGLCLRGKIGLANRVYAKMRSIGLVPDGKTRAFMLQ 576


>ref|XP_003558514.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29290-like isoform 1 [Brachypodium distachyon]
           gi|357113449|ref|XP_003558515.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At3g29290-like isoform 2 [Brachypodium distachyon]
           gi|357113451|ref|XP_003558516.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At3g29290-like isoform 3 [Brachypodium distachyon]
          Length = 574

 Score =  153 bits (386), Expect = 2e-35
 Identities = 69/107 (64%), Positives = 84/107 (78%)
 Frame = -3

Query: 346 SYNHVIFTCEAARNPKVALQVYQRMIHNKCTPDLFTHLSLVRSCVWGSHWKEAEDILESV 167
           SYNHVI  CE A  PKVAL+VYQRM H +C+PD FTHLS++R+C+WGS W + EDILE V
Sbjct: 462 SYNHVIRACEVACEPKVALKVYQRMTHERCSPDTFTHLSVIRACIWGSLWNKVEDILEEV 521

Query: 166 APNASIYNTIIHGLLLRGKTMMAKKWYDRMCEIGFKPDGKTRALMLQ 26
            P++SIYNT+I GL LRGK  +A+K Y +M  IG KPDGKTR+ MLQ
Sbjct: 522 EPDSSIYNTVIQGLCLRGKIRLARKVYTKMRSIGLKPDGKTRSFMLQ 568


>ref|XP_004169658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29290-like [Cucumis sativus]
          Length = 600

 Score =  146 bits (368), Expect = 2e-33
 Identities = 68/117 (58%), Positives = 85/117 (72%)
 Frame = -3

Query: 352 TESYNHVIFTCEAARNPKVALQVYQRMIHNKCTPDLFTHLSLVRSCVWGSHWKEAEDILE 173
           T SYN V+  CE AR P++ALQVY+RM+H K TPD FTHLSL+R C+WGS W E E +L 
Sbjct: 465 TSSYNIVMTACEMARKPEIALQVYERMVHQKLTPDTFTHLSLIRCCIWGSLWDEVELLLN 524

Query: 172 SVAPNASIYNTIIHGLLLRGKTMMAKKWYDRMCEIGFKPDGKTRALMLQVYSNERAR 2
             AP+ S+YN +I G+ LRGK+ +AKK Y +M E G +PDGKTRALMLQ    + AR
Sbjct: 525 KSAPDVSVYNVVIQGMCLRGKSDLAKKLYTKMRENGIQPDGKTRALMLQNLPKDPAR 581


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