BLASTX nr result

ID: Dioscorea21_contig00032422 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00032422
         (203 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284388.2| PREDICTED: DNA repair protein XRCC4 [Vitis v...   113   2e-23
emb|CBI26376.3| unnamed protein product [Vitis vinifera]              113   2e-23
ref|XP_002264931.1| PREDICTED: DNA repair protein XRCC4-like [Vi...   109   3e-22
ref|XP_004136882.1| PREDICTED: DNA repair protein XRCC4-like [Cu...   106   2e-21
ref|XP_002517008.1| DNA-repair protein XRCC4, putative [Ricinus ...   104   7e-21

>ref|XP_002284388.2| PREDICTED: DNA repair protein XRCC4 [Vitis vinifera]
          Length = 259

 Score =  113 bits (282), Expect = 2e-23
 Identities = 50/65 (76%), Positives = 55/65 (84%)
 Frame = -2

Query: 199 WFNSHFHLSITDGLHAWTCHATEAEVRLRAEQWDQPVSDYLALVERYLGVQQPGSCYAFE 20
           WF SHFHLSITDGLHAW C+A+E EVR RA QWDQPVSDY+AL ER+LG QQPGS Y F 
Sbjct: 27  WFPSHFHLSITDGLHAWLCNASEDEVRERAAQWDQPVSDYIALAERFLGFQQPGSVYGFS 86

Query: 19  DAGNG 5
           DAG+G
Sbjct: 87  DAGDG 91


>emb|CBI26376.3| unnamed protein product [Vitis vinifera]
          Length = 258

 Score =  113 bits (282), Expect = 2e-23
 Identities = 50/65 (76%), Positives = 55/65 (84%)
 Frame = -2

Query: 199 WFNSHFHLSITDGLHAWTCHATEAEVRLRAEQWDQPVSDYLALVERYLGVQQPGSCYAFE 20
           WF SHFHLSITDGLHAW C+A+E EVR RA QWDQPVSDY+AL ER+LG QQPGS Y F 
Sbjct: 27  WFPSHFHLSITDGLHAWLCNASEDEVRERAAQWDQPVSDYIALAERFLGFQQPGSVYGFS 86

Query: 19  DAGNG 5
           DAG+G
Sbjct: 87  DAGDG 91


>ref|XP_002264931.1| PREDICTED: DNA repair protein XRCC4-like [Vitis vinifera]
          Length = 166

 Score =  109 bits (272), Expect = 3e-22
 Identities = 48/65 (73%), Positives = 53/65 (81%)
 Frame = -2

Query: 199 WFNSHFHLSITDGLHAWTCHATEAEVRLRAEQWDQPVSDYLALVERYLGVQQPGSCYAFE 20
           WF SHFHLSITD LH W C+A+E EVR RA QWDQPVSDY+AL ER+LG QQPGS Y F 
Sbjct: 27  WFPSHFHLSITDSLHTWLCNASEDEVRERAAQWDQPVSDYIALAERFLGFQQPGSVYGFS 86

Query: 19  DAGNG 5
           DAG+G
Sbjct: 87  DAGDG 91


>ref|XP_004136882.1| PREDICTED: DNA repair protein XRCC4-like [Cucumis sativus]
           gi|449478860|ref|XP_004155437.1| PREDICTED: DNA repair
           protein XRCC4-like [Cucumis sativus]
          Length = 233

 Score =  106 bits (264), Expect = 2e-21
 Identities = 49/65 (75%), Positives = 51/65 (78%)
 Frame = -2

Query: 199 WFNSHFHLSITDGLHAWTCHATEAEVRLRAEQWDQPVSDYLALVERYLGVQQPGSCYAFE 20
           W +  F LSITDG HAWTCHATE EVRLRA QWDQ  SDY+AL ERYLG QQPGS Y F 
Sbjct: 31  WNHLRFDLSITDGFHAWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYDFA 90

Query: 19  DAGNG 5
           DAGNG
Sbjct: 91  DAGNG 95


>ref|XP_002517008.1| DNA-repair protein XRCC4, putative [Ricinus communis]
           gi|223543643|gb|EEF45171.1| DNA-repair protein XRCC4,
           putative [Ricinus communis]
          Length = 265

 Score =  104 bits (260), Expect = 7e-21
 Identities = 45/64 (70%), Positives = 53/64 (82%)
 Frame = -2

Query: 199 WFNSHFHLSITDGLHAWTCHATEAEVRLRAEQWDQPVSDYLALVERYLGVQQPGSCYAFE 20
           WF+SHFHLSITDGL+AW C+ATE +V+ RA QWDQPVS+Y+ L E YLG QQPGS Y F 
Sbjct: 32  WFDSHFHLSITDGLNAWVCNATEGQVKERAAQWDQPVSEYINLAEHYLGFQQPGSIYRFA 91

Query: 19  DAGN 8
           DAG+
Sbjct: 92  DAGD 95


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